Citrus Sinensis ID: 005991

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660------
Protein Sequence
MEDSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKVIYCFSFRANSHVIFIALIHNLCQLYSSKELFRSRCCYRTGRDSSVFCQEYVAGTAVELI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEcccccccccccEEEccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHcccEEEEEccccHHHHHHHHcccccEEEEEEEccccccccccccccccEEEEHHHHHHHcccccccccccccccEEEEEEcccccccccEEEccHHHHHHHHHHcccccccccccEEEEEcHHHHHHHHHHHHHHHHHccEEEEEccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccEEEEEEEccccccccccccccccEEEEccccccccccccHHHHHHHHccccccccccEEEEcccccEEEEcccccHHHcccccEEccHHHHHHHHccccccEEEEEEEccccEEEEEEEccHHHHHHHHHHccccccccHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHccccccccccccccccccccHccccccEEEcccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHccccccccEEEcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccEEEEEccccccHHHEEEEEEcccEEEEEEcHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHcccccccccccccccEEEEEEccccccccccEEEcHHHHHHHHHHHHHHcccccccEEEEHHHHHHHHHHHHHHHHHHHccEEEcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccEEEEccccccccccEEEccccccccccccccccccEEEEEEccccccccccccccccEEEEEcccEEEcccccHHHHHHHHcccccEcccccccEccccEEEEEEccccEEEEccccEEcHHHHHHHHcccccccEEEEEccccccEEEEEEEccHHHHHHHHHHccccccHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHEEEEEcc
Coil and Loop (DISEMBL)
MEDSSAQRRFKAVQRHLtstntdrcsqldynhttgcfvqsqgysvrlpeklqtgkwnvyrsarspltlvdrfpdhpeigtlhdNFIYAvenypdykylgtrvrvdgtvggyKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGlylinrpewlivdhacsaysyisvplydtlgpdaVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVggkdehlpslpstsgvKLISYLQLqsqgcsspqpfcppkpediaticytsgttgtpkgavlthgnlisnvAGFSLMVqfypsdiymsylpLAHIYERANQIVSVYYGVAVgfyqgdnlkLMDDLavlkptifpsvprlyNRIYAGITNAVKASGTLREKLFTAAYNSKkqaivsgqtpskmWDRLVFNKIRERLggrvrfmgsgasplspdVMDFLKVCFGcqvmegygmteTSCIISAidkgdnlsghvgspnpaceiklvdvpemnytsedqphprgeicvrgpivfqgyyknevqtrevidgdgwlhtgdiglwlpggrlkiiDRKKNIFKLaqgeyvapekIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKVIYCFSFRANSHVIFIALIHNLCQlysskelfrsrccyrtgrdssvfCQEYVAGTAVELI
Flexible Loop (DISEMBL)
MEDSSAQRRFKAVqrhltstntdrcsqldYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAaynskkqaivsgqtpskmwdRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYtsedqphprgeiCVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKVIYCFSFRANSHVIFIALIHNLCQLYSSKELFRSRCCYRTgrdssvfcqeyvagtaveli
Low Complexity Region (SEG)
MEDSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLgtrvrvdgtvggYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKVIYCFSFRANSHVIFIALIHNLCQLYSSKELFRSRCCYRTGRDSSVFCQEYVAGTAVELI
Disordered region (IsUnstruct)
***********************RCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSL**TSGVKLISYLQLQ***************EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVG**NPACEIKLVDVP*************GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKVIYCFSFRANSHVIFIALIHNLCQLYSSKELFRSRCCYRTGRDSSVFCQEYVAGTAV***
Disordered Region (DISOPRED)
*****************************************************GKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ**********PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKVIYCFSFRANSHVIFIALIHNLCQLYSSKELFRSRCCYRTGRDSSVFCQEYVAGTAVELI
Disordered Region (DISEMBL)
************VQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKVIYCFSFRANSHVIFIALIHNLCQLYSSKELFRSRCCYRTGRDSSVFCQEYVAGTAVELI
Disordered Region (DISPRO)
****************LTS*****CSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKVIYCFSFRANSHVIFIALIHNLCQLYSSKELFRSRCCYRTGRDSSVFCQEYVAGTAVELI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKVIYCFSFRANSHVIFIALIHNLCQLYSSKELFRSRCCYRTGRDSSVFCQEYVAGTAVELI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	666	2.2.26 [Sep-21-2011]
Q8LKS5	700	Long chain acyl-CoA synth	yes	no	0.905	0.861	0.754	0.0
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.893	0.848	0.75	0.0
Q9JID6	698	Long-chain-fatty-acid--Co	yes	no	0.845	0.806	0.424	1e-126
P33124	697	Long-chain-fatty-acid--Co	yes	no	0.740	0.707	0.468	1e-126
Q9UKU0	697	Long-chain-fatty-acid--Co	yes	no	0.741	0.708	0.469	1e-125
P33121	698	Long-chain-fatty-acid--Co	no	no	0.782	0.746	0.440	1e-125
Q91WC3	697	Long-chain-fatty-acid--Co	yes	no	0.741	0.708	0.457	1e-124
Q55DR6	667	Fatty acyl-CoA synthetase	yes	no	0.776	0.775	0.438	1e-123
Q9ULC5	683	Long-chain-fatty-acid--Co	no	no	0.771	0.752	0.442	1e-123
P41216	699	Long-chain-fatty-acid--Co	no	no	0.776	0.739	0.439	1e-122

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  986 bits (2549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/607 (75%), Positives = 528/607 (86%), Gaps = 4/607 (0%)

Query: 4   SSAQRRFKAVQRHL-TSTNTDRCSQLDYNHTTGC---FVQSQGYSVRLPEKLQTGKWNVY 59
           S  QRR + ++ H+ TS   D+ S L  N T      F +   YSV LPEKL TGKWNVY
Sbjct: 5   SPEQRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNVY 64

Query: 60  RSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEV 119
           RS RSP  LV RFPDHPEIGTLHDNF++AVE Y + KYLGTRVR DGT+G Y WMTYGE 
Sbjct: 65  RSKRSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEA 124

Query: 120 SAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY 179
           ++ R+ IGSGLLFHG+ +G  +GLY INRPEWL+VDHAC+AYS++SVPLYDTLGPDAVK+
Sbjct: 125 ASERQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKF 184

Query: 180 VVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL 239
           VVNHA ++AIFC+PQTLN LLSF++EIPS+ LIVVVGG DEHLPSLP  +GV ++SY +L
Sbjct: 185 VVNHANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKL 244

Query: 240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDI 299
            SQG SS  PF PPKPEDIATICYTSGTTGTPKG VLTHGNLI+NVAG S+  +F+PSD+
Sbjct: 245 LSQGRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSDV 304

Query: 300 YMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359
           Y+SYLPLAHIYERANQI+ VY GVAVGFYQGD  KLMDD AVL+PTIF SVPRLYNRIY 
Sbjct: 305 YISYLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYD 364

Query: 360 GITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSG 419
           GIT+AVK+SG ++++LF  AYNSKKQAI++G+TPS  WD+LVFNKI+E+LGGRVRFMGSG
Sbjct: 365 GITSAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSG 424

Query: 420 ASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDV 479
           ASPLSPDVMDFL++CFGC V EGYGMTETSC+ISA+D GDNLSGHVGSPNPACE+KLVDV
Sbjct: 425 ASPLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDV 484

Query: 480 PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
           PEMNYTS+DQP+PRGEICVRGPI+F+GYYK+E QTRE++DGDGWLHTGDIGLWLPGGRLK
Sbjct: 485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLK 544

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDW 599
           IIDRKKNIFKLAQGEY+APEKIENVY KC+FV QCFI+GDSFNS LVAIV+VDP+V+KDW
Sbjct: 545 IIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDW 604

Query: 600 AASQGIK 606
           AAS+GIK
Sbjct: 605 AASEGIK 611

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/596 (75%), Positives = 518/596 (86%), Gaps = 1/596 (0%)

Query: 11  KAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVD 70
            A+  HL  T++     L  N T G F    GYSV LPEKL TG WNVYRSA+SP  LV 
Sbjct: 17  NAIHSHLV-TSSRSSPLLRSNPTAGEFCLDNGYSVVLPEKLNTGSWNVYRSAKSPFKLVS 75

Query: 71  RFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGL 130
           RFPDHP+I TLHDNF +AV ++ DYKYLGTRVRVDGTVG YKWMTYGE   AR  +GSGL
Sbjct: 76  RFPDHPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGL 135

Query: 131 LFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIF 190
           + HG+  G  +G+Y INRPEWLIVDHACS+YSY+SVPLYDTLGPDAVK++VNHA ++AIF
Sbjct: 136 VHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIF 195

Query: 191 CIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPF 250
           C+ +TLN+LLS +SE+PSV L+VVVGG  E LPSLPS+SGVK++SY  L +QG S+PQ F
Sbjct: 196 CVAETLNSLLSCLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRF 255

Query: 251 CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY 310
            PPKP+D+ATICYTSGTTGTPKG VLTH NLI+NVAG S  V+F+ SD+Y+SYLPLAHIY
Sbjct: 256 FPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAGSSFSVKFFSSDVYISYLPLAHIY 315

Query: 311 ERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGT 370
           ERANQI++VY+GVAVGFYQGDN+KL+DDLA L+PT+F SVPRLYNRIYAGI NAVK SG 
Sbjct: 316 ERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSGG 375

Query: 371 LREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDF 430
           L+E+LF AAYN+KKQA+++G++ S +WDRLVFNKI++RLGGRVRFM SGASPLSP+VM+F
Sbjct: 376 LKERLFNAAYNAKKQALLNGKSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVMEF 435

Query: 431 LKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQP 490
           LKVCFG +V EGYGMTETSC+IS +D+GDNL+GHVGSPNPACE+KLVDVPEMNYTS DQP
Sbjct: 436 LKVCFGGRVTEGYGMTETSCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYTSADQP 495

Query: 491 HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 550
           HPRGEICVRGPI+F GYYK+E+QT+EVID DGWLHTGDIGLWLPGGRLKIIDRKKNIFKL
Sbjct: 496 HPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 555

Query: 551 AQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIK 606
           AQGEY+APEKIENVYAKCKFV QCFIYGDSFNS LVA+V+VDPDVLK WAAS+GIK
Sbjct: 556 AQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEGIK 611

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1

 Score =  454 bits (1167), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 254/599 (42%), Positives = 357/599 (59%), Gaps = 36/599 (6%)

Query: 75  HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHG 134
           + ++ TL+D F   ++   +   LG+R + D     Y+W++Y +V    + IGS LL  G
Sbjct: 86  YDDVRTLYDVFQRGIQVSNNGPCLGSR-KPDQP---YEWLSYKQVEDLSECIGSALLQKG 141

Query: 135 LQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC- 191
            Q      IG++  NRPEW+I++ AC AYS + VPLYDTLG DA+ Y+VN AE+  IF  
Sbjct: 142 FQASPDQFIGIFAQNRPEWVIIEQACFAYSMVVVPLYDTLGADAITYIVNKAELSVIFAD 201

Query: 192 IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQP 249
            P+    LL  +     P + +IVV+      L       GV++IS   ++  G ++ + 
Sbjct: 202 KPEKARILLESVENKLTPGLKIIVVMDSYGSELVEQGKKCGVEVISLKAMEGLGRANRRK 261

Query: 250 FCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ----FYPSDIYMSYLP 305
             PP+P+D+A IC+TSGTTG PKGA++TH N++S+ + F    +       SDI++S+LP
Sbjct: 262 PKPPEPDDLAVICFTSGTTGNPKGAMITHKNVVSDCSAFVKATEKALVLNASDIHISFLP 321

Query: 306 LAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
           LAH+YE+  Q V + +G  +GF+QGD   LMDDL  L+PTIFP VPRL NR++  I    
Sbjct: 322 LAHMYEQLLQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFPVVPRLLNRMFDRIF--A 379

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSK-MWDRLVFNKIRERLGGRVRFMGSGASPLS 424
           +A+ T++  L   A   K+  + SG   +  +WD+L+F+KI+  LGG+VR M +GA+P+S
Sbjct: 380 QANTTVKRWLLDFASKRKEAELRSGIIRNNSVWDKLIFHKIQSSLGGKVRLMVTGAAPVS 439

Query: 425 PDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNY 484
             V+ FL+   GCQ  EGYG TE +   S    GD  +GHVG+P P   IKLVDV EMNY
Sbjct: 440 ATVLTFLRAALGCQFYEGYGQTECTAGCSLSVPGDWTAGHVGAPMPCNFIKLVDVEEMNY 499

Query: 485 TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK 544
            +       GE+CV+GP VF+GY K+  +T E +D DGWLHTGDIG WLP G LKIIDRK
Sbjct: 500 MAA---MGEGEVCVKGPNVFKGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDRK 556

Query: 545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQG 604
           K+IFKLAQGEY+APEKIEN+Y + + V Q F++G+S  + L+AIV  D + L  WA  +G
Sbjct: 557 KHIFKLAQGEYIAPEKIENIYVRSEPVAQVFVHGESLQAFLIAIVVPDAESLASWARKRG 616

Query: 605 IKVIYCFSFRANSHVIFIALIHNLCQLYSSKELFRSRCCYRTGRDSSVFCQEYVAGTAV 663
                           F      LC+    K+        R G+DS +   E V G A+
Sbjct: 617 ----------------FEGSFEELCRNKDVKKAILEDMV-RIGKDSGLKSFEQVRGIAL 658

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate.

Cavia porcellus (taxid: 10141)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P33124|ACSL6_RAT Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1

 Score =  451 bits (1161), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/510 (46%), Positives = 331/510 (64%), Gaps = 17/510 (3%)

Query: 111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
           Y+W++Y EV+   + +GSGLL H  + G    IG++  NRPEW+I + AC  YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPL 177

Query: 169 YDTLGPDAVKYVVNHAEI-EAIFCIPQTLNTLLSFIS--EIPSVHLIVVVGGKDEHLPSL 225
           YDTLGP +++Y++N A+I   I   P     LL  +   E P + L++++   D+ L   
Sbjct: 178 YDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRER 237

Query: 226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
               GV + S   ++  G  + +   PP+P+D++ +C+TSGTTG PKGA+LTHGN++++ 
Sbjct: 238 GKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297

Query: 286 AGFSLMV--QFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
           +GF  +   Q+ P+  D++ SYLPLAH++ER  Q V   +G  VGF+QGD   L DD+  
Sbjct: 298 SGFLKVTESQWAPTCADVHFSYLPLAHMFERMVQSVVYCHGGRVGFFQGDIRLLSDDMKA 357

Query: 342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK-MWDRL 400
           L+PTIFP VPRL NR+Y  I +  +A  +L+  L   A   K+  + SG   +  +WD L
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFH--QADTSLKRWLLEFAAKRKQAEVRSGIIRNNSIWDEL 415

Query: 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
            FNKI+  LGG VR + +GA+P SP V+ FL+   GCQV EGYG TE +   +    GD 
Sbjct: 416 FFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDW 475

Query: 461 LSGHVGSPNPACEIKLVDVPEMNY-TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID 519
            SGHVG+P P   IKLVD  E+NY TS+ +    GEICV+GP VF+GY K+E +T+E +D
Sbjct: 476 TSGHVGAPLPCNHIKLVDAEELNYWTSKGE----GEICVKGPNVFKGYLKDEDRTKEALD 531

Query: 520 GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD 579
            DGWLHTGDIG WLP G LKIIDRKK+IFKLAQGEYVAPEKIEN+Y + + V Q +++GD
Sbjct: 532 SDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHGD 591

Query: 580 SFNSCLVAIVAVDPDVLKDWAASQGIKVIY 609
           S  + LV IV  DP+V+  WA  +GI+  Y
Sbjct: 592 SLKAFLVGIVVPDPEVMPCWAQKKGIEGNY 621

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9UKU0|ACSL6_HUMAN Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4

 Score =  450 bits (1158), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/509 (46%), Positives = 327/509 (64%), Gaps = 15/509 (2%)

Query: 111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
           Y+W++Y EV+   + +GSGLL H  +      IG++  NRPEW+IV+ AC  YS + VPL
Sbjct: 118 YQWLSYQEVADRAEFLGSGLLQHNCKACTDQFIGVFAQNRPEWIIVELACYTYSMVVVPL 177

Query: 169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFIS--EIPSVHLIVVVGGKDEHLPSL 225
           YDTLGP A++Y++N A+I  +    PQ    LL  +   E P + LI+++   +E L   
Sbjct: 178 YDTLGPGAIRYIINTADISTVIVDKPQKAVLLLEHVERKETPGLKLIILMDPFEEALKER 237

Query: 226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
               GV + S   ++  G  + Q   PP+P+D++ +C+TSGTTG PKGA+LTHGN++++ 
Sbjct: 238 GQKCGVVIKSMQAVEDCGQENHQAPVPPQPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297

Query: 286 AGFSLMVQ--FYP--SDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
           +GF  + +   +P   D+ +S+LPLAH++ER  Q V   +G  VGF+QGD   L DD+  
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357

Query: 342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS-KMWDRL 400
           L PTIFP VPRL NR+Y  I +  +A+  L+  L   A   K+  + SG   +  +WD L
Sbjct: 358 LCPTIFPVVPRLLNRMYDKIFS--QANTPLKRWLLEFAAKRKQAEVRSGIIRNDSIWDEL 415

Query: 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
            FNKI+  LGG VR + +GA+P SP V+ FL+   GCQV EGYG TE +   +    GD 
Sbjct: 416 FFNKIQASLGGCVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDW 475

Query: 461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
            SGHVG+P P   IKLVDV E+NY +       GEICVRGP VF+GY K+  +T+E +D 
Sbjct: 476 TSGHVGAPLPCNHIKLVDVEELNYWA---CKGEGEICVRGPNVFKGYLKDPDRTKEALDS 532

Query: 521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
           DGWLHTGDIG WLP G LKIIDRKK+IFKLAQGEYVAPEKIEN+Y + + V Q +++GDS
Sbjct: 533 DGWLHTGDIGKWLPAGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSQPVAQIYVHGDS 592

Query: 581 FNSCLVAIVAVDPDVLKDWAASQGIKVIY 609
             + LV IV  DP+V+  WA  +GI+  Y
Sbjct: 593 LKAFLVGIVVPDPEVMPSWAQKRGIEGTY 621

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1

 Score =  448 bits (1152), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/540 (44%), Positives = 338/540 (62%), Gaps = 19/540 (3%)

Query: 77  EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQ 136
           ++ TL++ F   ++   +   LG+R + D     Y+W++Y +V+   + IGS L+  G +
Sbjct: 88  DVTTLYEGFQRGIQVSNNGPCLGSR-KPDQP---YEWLSYKQVAELSECIGSALIQKGFK 143

Query: 137 KGVR--IGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC-IP 193
                 IG++  NRPEW+I++  C AYS + VPLYDTLG +A+ Y+VN AE+  +F   P
Sbjct: 144 TAPDQFIGIFAQNRPEWVIIEQGCFAYSMVIVPLYDTLGNEAITYIVNKAELSLVFVDKP 203

Query: 194 QTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFC 251
           +    LL  +    IP + +IVV+      L       GV++ S   ++  G ++ +   
Sbjct: 204 EKAKLLLEGVENKLIPGLKIIVVMDAYGSELVERGQRCGVEVTSMKAMEDLGRANRRKPK 263

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF----SLMVQFYPSDIYMSYLPLA 307
           PP PED+A IC+TSGTTG PKGA++TH N++S+ + F       V   P D  +S+LPLA
Sbjct: 264 PPAPEDLAVICFTSGTTGNPKGAMVTHRNIVSDCSAFVKATENTVNPCPDDTLISFLPLA 323

Query: 308 HIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKA 367
           H++ER  + V + +G  +GF+QGD   LMDDL VL+PT+FP VPRL NR++  I    +A
Sbjct: 324 HMFERVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTVFPVVPRLLNRMFDRIFG--QA 381

Query: 368 SGTLREKLFTAAYNSKKQAIVSGQTPSK-MWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
           + TL+  L   A   K+  + SG   +  +WDRL+F+K++  LGGRVR M +GA+P+S  
Sbjct: 382 NTTLKRWLLDFASKRKEAELRSGIIRNNSLWDRLIFHKVQSSLGGRVRLMVTGAAPVSAT 441

Query: 427 VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS 486
           V+ FL+   GCQ  EGYG TE +        GD  +GHVG+P P   IKLVDV EMNY +
Sbjct: 442 VLTFLRAALGCQFYEGYGQTECTAGCCLTMPGDWTAGHVGAPMPCNLIKLVDVEEMNYMA 501

Query: 487 EDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
            +     GE+CV+GP VFQGY K+  +T E +D DGWLHTGDIG WLP G LKIIDRKK+
Sbjct: 502 AEG---EGEVCVKGPNVFQGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKKH 558

Query: 547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIK 606
           IFKLAQGEY+APEKIEN+Y + + V Q F++G+S  + L+AIV  D + L  WA  +G +
Sbjct: 559 IFKLAQGEYIAPEKIENIYMRSEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGFE 618

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q91WC3|ACSL6_MOUSE Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1

 Score =  447 bits (1149), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/509 (45%), Positives = 325/509 (63%), Gaps = 15/509 (2%)

Query: 111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
           Y+W++Y EV+   + +GSGLL H  + G    +G++  NRPEW+I + AC  YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFVGVFAQNRPEWIIAELACYTYSMVVVPL 177

Query: 169 YDTLGPDAVKYVVNHAEI-EAIFCIPQTLNTLLSFIS--EIPSVHLIVVVGGKDEHLPSL 225
           YDTLGP ++ Y++N A+I   I   P     LL  +   E P + L++++   ++ L   
Sbjct: 178 YDTLGPGSISYIINTADICTVIVDKPHKATLLLEHVERKETPGLKLVILMEPFEDALRER 237

Query: 226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
               GV + S   ++  G  +     PP+P+D++ +C+TSGTTG PKGA+LTHGN++++ 
Sbjct: 238 GKKCGVDIKSMQAIEDCGRENHHAPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297

Query: 286 AGFSLMVQ--FYP--SDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
           +GF  + +   +P   D+ +S+LPLAH++ER  Q V   +G  VGF+QGD   L DD+  
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357

Query: 342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK-MWDRL 400
           L+PTIFP VPRL NR+Y  I +  +A  +L+  L   A   K+  + SG   +  +WD L
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFH--QADTSLKRWLLEFAAKRKQAEVRSGIIRNNSIWDEL 415

Query: 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
            FNKI+  LGG VR + +GA+P SP V+ FL+   GCQV EGYG TE +   +    GD 
Sbjct: 416 FFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDW 475

Query: 461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
            SGHVG+P P   IKLVD  E+NY +       GEICV+GP VF+GY K+E +T+E +D 
Sbjct: 476 TSGHVGAPLPCNHIKLVDAEELNYWT---CKGEGEICVKGPNVFKGYLKDEDRTKEALDS 532

Query: 521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
           DGWLHTGDIG WLP G LKIIDRKK+IFKLAQGEYVAPEKIEN+Y + + V Q +++GDS
Sbjct: 533 DGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHGDS 592

Query: 581 FNSCLVAIVAVDPDVLKDWAASQGIKVIY 609
             + LV IV  DP+V+  WA  +GI+  Y
Sbjct: 593 LKAFLVGIVVPDPEVMPSWAQKKGIEGTY 621

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1

 Score =  444 bits (1141), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/529 (43%), Positives = 324/529 (61%), Gaps = 12/529 (2%)

Query: 80  TLHDNFIYAVENYPDYKYLGTR-VRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKG 138
           TL+D  +Y +    D  +LG R +  DG  G YKW++Y +       IGS L+  GL KG
Sbjct: 55  TLYD--VYRINKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKG 112

Query: 139 VRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNT 198
            RIG++ INRPEW++ D A   +S + V LY TLG +A++YVVNH+EI  + C  + +  
Sbjct: 113 DRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEK 172

Query: 199 LLSFISEIPSVHLIVVVGGK---DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKP 255
           +LS    +P   +  +V         L        VKL      +  G  +P     P P
Sbjct: 173 ILS----MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSP 228

Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM-VQFYPSDIYMSYLPLAHIYERAN 314
           ED+ T+ YTSG+TG PKG +LTH N++S VAG +       P D++MSYLPLAH +ERA 
Sbjct: 229 EDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFSPAGVIPEDVHMSYLPLAHSFERAV 288

Query: 315 QIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREK 374
             +  Y G  +GF+ G   +L +D+ VL+PT     PR++ R++  +   V     L++ 
Sbjct: 289 VSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKF 348

Query: 375 LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC 434
           LF    NSK+ A+  G T + +WD+LVF+K ++RLGGRV+F+ SG++PL P + +FL+ C
Sbjct: 349 LFNWGLNSKQSALRLGST-TPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRAC 407

Query: 435 FGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRG 494
           F C V+ GYG++E     S     DN  GHVG P  ACE+KL+DVPEMNY S D+P PRG
Sbjct: 408 FCCPVVSGYGLSENVGGASVAYPEDNNVGHVGPPLSACEMKLIDVPEMNYFSTDKPCPRG 467

Query: 495 EICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGE 554
           E+C+RG  VF+GY+K+  +T+E +  DGW HTGDIG W   G L IIDRKKNIFKL+QGE
Sbjct: 468 EVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSIIDRKKNIFKLSQGE 527

Query: 555 YVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQ 603
           YVA E +E+V+ +  F  Q F+YGDS NS LV +V  D +V++   AS+
Sbjct: 528 YVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLFASK 576

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1

 Score =  443 bits (1140), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/531 (44%), Positives = 333/531 (62%), Gaps = 17/531 (3%)

Query: 111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
           Y+W++Y +VS   + +GS LL  G +      +G++  NRPEW+I + AC  YS ++VPL
Sbjct: 103 YRWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPL 162

Query: 169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSL 225
           YDTLGP+A+ ++VN A+I  + C  PQ    L+  + +   PS+ +I+++   D+ L   
Sbjct: 163 YDTLGPEAIVHIVNKADIAMVICDTPQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQR 222

Query: 226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
              SG++++S    ++ G    +   PP PED++ IC+TSGTTG PKGA++TH N++SN 
Sbjct: 223 GEKSGIEILSLYDAENLGKEHFRKPVPPSPEDLSVICFTSGTTGDPKGAMITHQNIVSNA 282

Query: 286 AGFSLMVQF----YPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
           A F   V+      P D+ +SYLPLAH++ER  Q V    G  VGF+QGD   L DD+  
Sbjct: 283 AAFLKCVEHAYEPTPDDVAISYLPLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKT 342

Query: 342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP-SKMWDRL 400
           LKPT+FP+VPRL NRIY  + N  K    L++ L   A +SK + +  G       WD+L
Sbjct: 343 LKPTLFPAVPRLLNRIYDKVQNEAKTP--LKKFLLKLAVSSKFKELQKGIIRHDSFWDKL 400

Query: 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
           +F KI++ LGGRVR + +GA+P+S  VM F +   GCQV E YG TE +   +    GD 
Sbjct: 401 IFAKIQDSLGGRVRVIVTGAAPMSTSVMTFFRAAMGCQVYEAYGQTECTGGCTFTLPGDW 460

Query: 461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
            SGHVG P     +KL DV +MNY + +     GE+C++G  VF+GY K+  +T+E +D 
Sbjct: 461 TSGHVGVPLACNYVKLEDVADMNYFTVNN---EGEVCIKGTNVFKGYLKDPEKTQEALDS 517

Query: 521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
           DGWLHTGDIG WLP G LKIIDRKKNIFKLAQGEY+APEKIEN+Y + + VLQ F++G+S
Sbjct: 518 DGWLHTGDIGRWLPNGTLKIIDRKKNIFKLAQGEYIAPEKIENIYNRSQPVLQIFVHGES 577

Query: 581 FNSCLVAIVAVDPDVLKDWAASQGIKVIYCFSFRANSHVIFIALIHNLCQL 631
             S LV +V  D DVL  +AA  G+K    F     + V+  A++ +L ++
Sbjct: 578 LRSSLVGVVVPDTDVLPSFAAKLGVK--GSFEELCQNQVVREAILEDLQKI 626

Acyl-CoA synthetases (ACSL) activate long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2

 Score =  440 bits (1131), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/548 (43%), Positives = 343/548 (62%), Gaps = 31/548 (5%)

Query: 75  HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHG 134
           + ++ T++D F   ++   +   LG+R         Y+W++Y EV+   + IGSGL+   
Sbjct: 87  YDDVRTMYDGFQRGIQVSNNGPCLGSR----KPNQPYEWISYKEVAELAECIGSGLI--- 139

Query: 135 LQKGVR------IGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEA 188
            QKG +      IGL+  NRPEW+IV+  C +YS + VPLYDTLG DA+ Y+VN AE+  
Sbjct: 140 -QKGFKPCSEQFIGLFSQNRPEWVIVEQGCFSYSMVVVPLYDTLGADAITYIVNKAELSV 198

Query: 189 IFC-IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCS 245
           IF   P+    LL  +     P + +IV++      L       GV++IS   L+  G  
Sbjct: 199 IFADKPEKAKLLLEGVENKLTPCLKIIVIMDSYGSDLVERGKKCGVEIISLKALEDLGRV 258

Query: 246 SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ--FYPS--DIYM 301
           +     PP+PED+A IC+TSGTTG PKGA++TH N+I++ +GF    +  F  S  D+ +
Sbjct: 259 NRVKPKPPEPEDLAIICFTSGTTGNPKGAMITHQNIINDCSGFIKATESAFIASTDDVLI 318

Query: 302 SYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGI 361
           S+LPLAH++E   + V + +G  +GF+QGD   LMDDL VL+PTIFP VPRL NR++  I
Sbjct: 319 SFLPLAHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRI 378

Query: 362 TNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK-MWDRLVFNKIRERLGGRVRFMGSGA 420
               +A+ +L+  L   A   K+  + SG   +  +WD+L+F+KI+  LGG+VR M +GA
Sbjct: 379 FG--QANTSLKRWLLDFASKRKEAELRSGIVRNNSLWDKLIFHKIQSSLGGKVRLMITGA 436

Query: 421 SPLSPDVMDFLKVCFGCQVMEGYGMTETS--CIISAIDKGDNLSGHVGSPNPACEIKLVD 478
           +P+S  V+ FL+   GCQ  EGYG TE +  C +S    GD  +GHVG+P P   +KLVD
Sbjct: 437 APVSATVLTFLRTALGCQFYEGYGQTECTAGCCLSL--PGDWTAGHVGAPMPCNYVKLVD 494

Query: 479 VPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRL 538
           V EMNY +       GE+CV+G  VF+GY K+  +T E +D DGWLHTGDIG WLP G L
Sbjct: 495 VEEMNYLAS---KGEGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLPNGTL 551

Query: 539 KIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKD 598
           KIIDRKK+IFKLAQGEY+APEKIEN+Y + + V Q F++G+S  + L+A+V  D + L  
Sbjct: 552 KIIDRKKHIFKLAQGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAVVVPDVESLPS 611

Query: 599 WAASQGIK 606
           WA  +G++
Sbjct: 612 WAQKRGLQ 619

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	666
224123160	695	predicted protein [Populus trichocarpa]	0.906	0.869	0.795	0.0
225432604	697	PREDICTED: long chain acyl-CoA synthetas	0.906	0.866	0.777	0.0
147863228	703	hypothetical protein VITISV_002313 [Viti	0.906	0.859	0.786	0.0
296088349	633	unnamed protein product [Vitis vinifera]	0.906	0.954	0.788	0.0
255552335	694	Acyl-CoA synthetase [Ricinus communis] g	0.909	0.873	0.768	0.0
297812959	699	long-chain acyl-CoA synthetase 7 [Arabid	0.905	0.862	0.757	0.0
83320527	690	ACS4 [Ricinus communis]	0.909	0.878	0.779	0.0
20805875	700	long chain acyl-CoA synthetase 7 [Arabid	0.905	0.861	0.754	0.0
22327099	700	long-chain acyl-CoA synthetase 7 [Arabid	0.905	0.861	0.754	0.0
356574400	698	PREDICTED: long chain acyl-CoA synthetas	0.902	0.861	0.737	0.0

>gi|224123160|ref|XP_002319009.1| predicted protein [Populus trichocarpa] gi|222857385|gb|EEE94932.1| predicted protein [Populus trichocarpa]

 Score = 1022 bits (2642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/605 (79%), Positives = 536/605 (88%), Gaps = 1/605 (0%)

Query: 3   DSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGC-FVQSQGYSVRLPEKLQTGKWNVYRS 61
           DS AQRR K++Q H+ S+ T   S L  N T+   FV  Q YSV LPEKLQTGKWNVYRS
Sbjct: 2   DSPAQRRLKSIQSHVLSSTTADQSDLQANLTSSSQFVHRQQYSVCLPEKLQTGKWNVYRS 61

Query: 62  ARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSA 121
           ARSP+ +V RF DHPEI TLHDNF++AV+ + DYKYLGTRV+ DG +G Y WMTYGE  A
Sbjct: 62  ARSPMKIVTRFHDHPEIETLHDNFVHAVKTFGDYKYLGTRVQADGMIGEYTWMTYGEAGA 121

Query: 122 ARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVV 181
           AR+ IGS L FHGLQKG  IGLY INRPEWLIVDHAC+AYSYISVPLYDTLGPDAVKYVV
Sbjct: 122 AREAIGSALRFHGLQKGACIGLYFINRPEWLIVDHACTAYSYISVPLYDTLGPDAVKYVV 181

Query: 182 NHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQS 241
           NHA+++AIFC+P+TLNTLLSFISEIPSV LIVVVGG DEHLPSLP  SGVKL SY +L S
Sbjct: 182 NHADVQAIFCVPETLNTLLSFISEIPSVRLIVVVGGVDEHLPSLPLASGVKLRSYTKLFS 241

Query: 242 QGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYM 301
           +G SS QPF PPKPED+ATICYTSGTTGTPKG VLTH NLIS+VAGF + ++F P+DIY+
Sbjct: 242 EGRSSLQPFIPPKPEDVATICYTSGTTGTPKGVVLTHNNLISSVAGFCMAIKFNPADIYI 301

Query: 302 SYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGI 361
           SYLPLAHIYER+NQIVSVYYGVAVGFYQGDNLKL+DDL+ L+PTI  SVPRLYNRIY GI
Sbjct: 302 SYLPLAHIYERSNQIVSVYYGVAVGFYQGDNLKLLDDLSALRPTILCSVPRLYNRIYDGI 361

Query: 362 TNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGAS 421
            NAVK+SG L+E+LF AAYNSKKQA++SG+ PS MWDRLVFNKI+E+LGGRVRFMGSGAS
Sbjct: 362 INAVKSSGVLKERLFRAAYNSKKQALMSGRNPSPMWDRLVFNKIKEKLGGRVRFMGSGAS 421

Query: 422 PLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPE 481
           PLSPDVMDFL+VCFGCQV+EGYGMTETSC+IS++D+GDNLSGHVGSPNPACEIKLVDVPE
Sbjct: 422 PLSPDVMDFLRVCFGCQVLEGYGMTETSCVISSVDQGDNLSGHVGSPNPACEIKLVDVPE 481

Query: 482 MNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII 541
           MNYTSEDQPHPRGEICVRGP +FQGYYK EVQ REVID DGWLHTGDIGLWLPGGRLKII
Sbjct: 482 MNYTSEDQPHPRGEICVRGPTIFQGYYKAEVQMREVIDDDGWLHTGDIGLWLPGGRLKII 541

Query: 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAA 601
           DRKKNIFKLAQGEY+APEK+ENVY KC+FV QCFIYGDSFNS LVA+VAV+PDVL+DWA 
Sbjct: 542 DRKKNIFKLAQGEYIAPEKVENVYTKCRFVSQCFIYGDSFNSSLVAVVAVEPDVLRDWAV 601

Query: 602 SQGIK 606
           S+GIK
Sbjct: 602 SEGIK 606

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432604|ref|XP_002277936.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Vitis vinifera] gi|297737021|emb|CBI26222.3| unnamed protein product [Vitis vinifera]

 Score = 1018 bits (2631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/606 (77%), Positives = 544/606 (89%), Gaps = 2/606 (0%)

Query: 3   DSSAQRRFKAVQRHLTSTNTD--RCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYR 60
           +S+ QRR  A+Q  L +T  D    SQL  N T G FV  QGYSV LPEKL+TGKWNVYR
Sbjct: 2   ESAPQRRLTAIQTQLIATAGDDRSHSQLLTNQTAGEFVSEQGYSVVLPEKLETGKWNVYR 61

Query: 61  SARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVS 120
           SA+SPL LV RFPDHPEIGTLHDNF+++VE + DYKYLGTR+RVDGTVG YKWMTYGE  
Sbjct: 62  SAQSPLRLVSRFPDHPEIGTLHDNFVHSVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAG 121

Query: 121 AARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYV 180
            AR  IGSGL+++G+ KG  +GLY INRPEWLIVDHACSA+SY+SVPLYDTLGPDAVKY+
Sbjct: 122 TARSAIGSGLIYYGIPKGSCVGLYFINRPEWLIVDHACSAFSYVSVPLYDTLGPDAVKYI 181

Query: 181 VNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQ 240
           VNHA ++AIFC+PQTLN+LLSF+SEIPSV LIVVVGG D+ +PSLPST+GV+++SY +L 
Sbjct: 182 VNHAVLQAIFCVPQTLNSLLSFLSEIPSVRLIVVVGGIDDQMPSLPSTTGVEVVSYSKLL 241

Query: 241 SQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIY 300
           +QG S PQPFCPPKP+D+ATICYTSGTTGTPKGAVL+HGNLI+NVAG +L V+FYPSD+Y
Sbjct: 242 NQGRSRPQPFCPPKPDDVATICYTSGTTGTPKGAVLSHGNLIANVAGATLSVKFYPSDVY 301

Query: 301 MSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
           +SYLPLAHIYERANQ+++ Y+GVAVGFYQGDNLKLMDD+A L+PTIF SVPRLYNRIYAG
Sbjct: 302 ISYLPLAHIYERANQVMTAYFGVAVGFYQGDNLKLMDDMAALRPTIFCSVPRLYNRIYAG 361

Query: 361 ITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGA 420
           ITNAVK SG LRE+LF AAYN+KK+AI+SG+ PS MWDRLVFNKI+E+LGGRVRFM SGA
Sbjct: 362 ITNAVKTSGVLRERLFNAAYNAKKRAILSGKNPSPMWDRLVFNKIKEKLGGRVRFMVSGA 421

Query: 421 SPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVP 480
           SPLSPDVM+FL++CFG ++ EGYGMTETSC+IS++D+ DNL+GHVGSPNPACE+KLVDVP
Sbjct: 422 SPLSPDVMEFLRICFGGRITEGYGMTETSCVISSMDESDNLTGHVGSPNPACEVKLVDVP 481

Query: 481 EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
           EMNYTSEDQP+PRGEICVRGPI+F GY+K+EVQTREVID DGWLHTGDIGLWLPGGRLKI
Sbjct: 482 EMNYTSEDQPYPRGEICVRGPILFLGYHKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKI 541

Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWA 600
           IDRKKNIFKLAQGEY+APEKIENVYAKCKFV QCF+YGDS NS LVAIV+VDPDVLK WA
Sbjct: 542 IDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSMNSSLVAIVSVDPDVLKAWA 601

Query: 601 ASQGIK 606
           AS+GI+
Sbjct: 602 ASEGIQ 607

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863228|emb|CAN82622.1| hypothetical protein VITISV_002313 [Vitis vinifera]

 Score = 1008 bits (2605), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/604 (78%), Positives = 526/604 (87%)

Query: 3   DSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSA 62
           +S+AQRR KA+Q HL        S +  + T   F  +QGYSV LPEKL TGKWNVYRS 
Sbjct: 2   ESTAQRRLKAIQGHLVPITHVLDSHVQTSTTASEFFHTQGYSVVLPEKLNTGKWNVYRSV 61

Query: 63  RSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAA 122
           RSPL L+ R P+HPEIGTLHDNF++A+E + DY YLGTRVR DGTVG YKWMTYGE    
Sbjct: 62  RSPLKLISRLPEHPEIGTLHDNFMHAIEAFKDYNYLGTRVRGDGTVGEYKWMTYGEAGTV 121

Query: 123 RKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVN 182
           R  IGSGL  HGL +G  IGLY INRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY+VN
Sbjct: 122 RLAIGSGLRHHGLLEGACIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYIVN 181

Query: 183 HAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ 242
           HA+++AIFC+P TLNTLLSF+SEIPSV L+VVVGG DEH+PSLPS S VKLIS+ +L SQ
Sbjct: 182 HADVQAIFCLPHTLNTLLSFLSEIPSVRLVVVVGGIDEHVPSLPSNSQVKLISFAKLLSQ 241

Query: 243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMS 302
           G S  QPFCPPKPEDIATICYTSGTTGTPKG +LTHGNLI+ +AG SL ++F PSDIY+S
Sbjct: 242 GHSDLQPFCPPKPEDIATICYTSGTTGTPKGVILTHGNLIATIAGASLTLKFCPSDIYIS 301

Query: 303 YLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGIT 362
           YLPLAHIYERANQ++  YYG AVGFYQGDNLKLMDDLA L+PTIF SVPRLYNRIY+GI 
Sbjct: 302 YLPLAHIYERANQVLLPYYGGAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYSGIM 361

Query: 363 NAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASP 422
           NAV+ SG LR+ LF AAYNSKKQ I+SG+ PS MWDRLVF+KI+  LGGRV FMGSGASP
Sbjct: 362 NAVQTSGVLRKTLFNAAYNSKKQVIISGRNPSPMWDRLVFSKIKGMLGGRVHFMGSGASP 421

Query: 423 LSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEM 482
           LSPDVMDFL+VCFGCQV+EGYGMTETSC+IS +DKGDNLSGHVGSPNPACEIKLVDVPEM
Sbjct: 422 LSPDVMDFLRVCFGCQVIEGYGMTETSCLISCMDKGDNLSGHVGSPNPACEIKLVDVPEM 481

Query: 483 NYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID 542
           NYTSEDQP+PRGEICVRGP++FQGYYK+EVQT+EVIDGDGWLHTGDIGLWLPGGRLKIID
Sbjct: 482 NYTSEDQPYPRGEICVRGPVLFQGYYKDEVQTKEVIDGDGWLHTGDIGLWLPGGRLKIID 541

Query: 543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAAS 602
           RKKNIFKLAQGEY+APEKIENVYAKCKFV QCFIYGDS NSCLVAIV+VDPDVLKDWA S
Sbjct: 542 RKKNIFKLAQGEYIAPEKIENVYAKCKFVSQCFIYGDSLNSCLVAIVSVDPDVLKDWATS 601

Query: 603 QGIK 606
           + IK
Sbjct: 602 EAIK 605

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088349|emb|CBI36794.3| unnamed protein product [Vitis vinifera]

 Score = 1006 bits (2602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/604 (78%), Positives = 526/604 (87%)

Query: 3   DSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSA 62
           +S+AQRR KA+Q HL        S +  + T   F  SQGYSV LPEKL TGKWNVYRS 
Sbjct: 2   ESTAQRRLKAIQGHLVPITHVLDSHVQTSTTASEFFHSQGYSVVLPEKLNTGKWNVYRSV 61

Query: 63  RSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAA 122
           RSPL L+ R P+HPEIGTLHDNF++A+E + DY YLGTRVR DGTVG YKWMTYGE    
Sbjct: 62  RSPLKLISRLPEHPEIGTLHDNFMHAIEAFKDYNYLGTRVRGDGTVGEYKWMTYGEAGTV 121

Query: 123 RKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVN 182
           R  IGSGL  HGL +G  IGLY INRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY+VN
Sbjct: 122 RLAIGSGLRHHGLLEGACIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYIVN 181

Query: 183 HAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ 242
           HA+++AIFC+P TLNTLLSF+SEIPSV L+VVVGG DEH+PSLPS S VKLIS+ +L SQ
Sbjct: 182 HADVQAIFCLPHTLNTLLSFLSEIPSVRLVVVVGGIDEHVPSLPSNSQVKLISFAKLLSQ 241

Query: 243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMS 302
           G S  QPFCPPKPEDIATICYTSGTTGTPKG +LTHGNLI+ +AG SL ++F PSDIY+S
Sbjct: 242 GHSDLQPFCPPKPEDIATICYTSGTTGTPKGVILTHGNLIATIAGASLTLKFCPSDIYIS 301

Query: 303 YLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGIT 362
           YLPLAHIYERANQ++  YYG AVGFYQGDNLKLMDDLA L+PTIF SVPRLYNRIY+GI 
Sbjct: 302 YLPLAHIYERANQVLLAYYGGAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYSGIM 361

Query: 363 NAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASP 422
           NAV+ SG LR+ LF AAYNSKKQ I+SG+ PS MWDRLVF+KI+  LGGRV FMGSGASP
Sbjct: 362 NAVQTSGVLRKTLFNAAYNSKKQVIISGRNPSPMWDRLVFSKIKGMLGGRVHFMGSGASP 421

Query: 423 LSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEM 482
           LSPDVMDFL+VCFGCQV+EGYGMTETSC+IS +DKGDNLSGHVGSPNPACEIKLVDVPEM
Sbjct: 422 LSPDVMDFLRVCFGCQVIEGYGMTETSCLISCMDKGDNLSGHVGSPNPACEIKLVDVPEM 481

Query: 483 NYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID 542
           NYTSEDQP+PRGEICVRGP++FQGYYK+EVQT+EVIDGDGWLHTGDIGLWLPGGRLKIID
Sbjct: 482 NYTSEDQPYPRGEICVRGPVLFQGYYKDEVQTKEVIDGDGWLHTGDIGLWLPGGRLKIID 541

Query: 543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAAS 602
           RKKNIFKLAQGEY+APEKIENVYAKCKFV QCFIYGDS NSCLVAIV+VDPDVLKDWA S
Sbjct: 542 RKKNIFKLAQGEYIAPEKIENVYAKCKFVSQCFIYGDSLNSCLVAIVSVDPDVLKDWATS 601

Query: 603 QGIK 606
           + IK
Sbjct: 602 EAIK 605

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552335|ref|XP_002517212.1| Acyl-CoA synthetase [Ricinus communis] gi|83320525|gb|ABC02881.1| ACS2 [Ricinus communis] gi|223543847|gb|EEF45375.1| Acyl-CoA synthetase [Ricinus communis]

 Score = 1003 bits (2594), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/606 (76%), Positives = 534/606 (88%)

Query: 1   MEDSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYR 60
           M+  SAQRR +A+  HL +      S L  N T G F   QGYSV LPEKLQTGKWNVYR
Sbjct: 1   MDMDSAQRRIQAIHGHLLAARDCSPSHLRLNPTAGEFFSEQGYSVVLPEKLQTGKWNVYR 60

Query: 61  SARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVS 120
           SARSPL LV RFPDHP+IGTLHDNF  +V+ + DYKYLGTR+RVDGTVG YKWMTYGE  
Sbjct: 61  SARSPLRLVSRFPDHPDIGTLHDNFARSVDTFRDYKYLGTRIRVDGTVGEYKWMTYGEAG 120

Query: 121 AARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYV 180
            AR  IGSGL+ HG+ KG  +GLY INRPEWLIVDHACSAYSYISVPLYDTLGPDAVK++
Sbjct: 121 TARTAIGSGLMHHGIPKGSSVGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKFI 180

Query: 181 VNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQ 240
           VNHA+++AIFC+PQTL  LLSF+SEI SV LIVVVGG D+ +PSLPS++GV++++Y +L 
Sbjct: 181 VNHADVQAIFCVPQTLTPLLSFLSEISSVRLIVVVGGMDDQMPSLPSSTGVQVVTYSKLL 240

Query: 241 SQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIY 300
           SQG S+ QPFCPPKPED+ATICYTSGTTGTPKGA LTHGNLI+NVAG +L  +FYPSDIY
Sbjct: 241 SQGHSNLQPFCPPKPEDVATICYTSGTTGTPKGAALTHGNLIANVAGATLATKFYPSDIY 300

Query: 301 MSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
           +SYLPLAHIYERANQ+++VYYGVAVGFYQGDNLKLMDD+A L+PTIF SVPRLYNRIYAG
Sbjct: 301 ISYLPLAHIYERANQVLTVYYGVAVGFYQGDNLKLMDDMAALRPTIFCSVPRLYNRIYAG 360

Query: 361 ITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGA 420
           ITNAVK SG LRE+LF AAYN+KKQAI++G++PS MWDRLVF+KI+ +LGGRVRF+ SGA
Sbjct: 361 ITNAVKTSGGLRERLFNAAYNAKKQAILNGRSPSPMWDRLVFDKIKAKLGGRVRFIASGA 420

Query: 421 SPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVP 480
           SPLSPDVM+FLK+CFG +V EGYGMTETSC+ISA+++GDNL+GHVGSPNPACEIKLVDVP
Sbjct: 421 SPLSPDVMEFLKICFGGRVSEGYGMTETSCVISAMEEGDNLTGHVGSPNPACEIKLVDVP 480

Query: 481 EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
           EM+YTS+DQP+PRGEICVRGPIVFQGY+K+E QTR+VID DGWLHTGDIGLWLP GRLKI
Sbjct: 481 EMSYTSDDQPYPRGEICVRGPIVFQGYHKDEAQTRDVIDEDGWLHTGDIGLWLPEGRLKI 540

Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWA 600
           IDRKKNIFKLAQGEY+APEKIENVYAKC+F+ QCF+YGDS NS LVAIVAVD D LK WA
Sbjct: 541 IDRKKNIFKLAQGEYIAPEKIENVYAKCRFIAQCFVYGDSLNSALVAIVAVDQDTLKAWA 600

Query: 601 ASQGIK 606
           AS+GIK
Sbjct: 601 ASEGIK 606

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812959|ref|XP_002874363.1| long-chain acyl-CoA synthetase 7 [Arabidopsis lyrata subsp. lyrata] gi|297320200|gb|EFH50622.1| long-chain acyl-CoA synthetase 7 [Arabidopsis lyrata subsp. lyrata]

 Score =  987 bits (2552), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/606 (75%), Positives = 525/606 (86%), Gaps = 3/606 (0%)

Query: 4   SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGC---FVQSQGYSVRLPEKLQTGKWNVYR 60
           S AQRR + ++ HL ++  D  S L  N T      F+   GYSV LPEK   GKWNVYR
Sbjct: 5   SPAQRRLETIRSHLYTSPADDQSSLFLNATASSASPFLNKDGYSVVLPEKPDNGKWNVYR 64

Query: 61  SARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVS 120
           SA+SP  LV RF DHPEIGTLHDNF+YAVE YP+ KYLGTRVR DGT+G Y WMTY E +
Sbjct: 65  SAKSPTKLVSRFQDHPEIGTLHDNFVYAVETYPENKYLGTRVRSDGTIGEYSWMTYAETA 124

Query: 121 AARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYV 180
           + R+ IGSGLLFHG+ +G  +GLY INRPEWL+VDHAC+AYS+ISVPLYDTLGPDAVK+V
Sbjct: 125 SERQAIGSGLLFHGINQGACVGLYFINRPEWLVVDHACAAYSFISVPLYDTLGPDAVKFV 184

Query: 181 VNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQ 240
           VNHA ++AIFC+PQTLN LLSF++EIPS+ LIVVVGG DEHLPSLP  SGV ++SY +L 
Sbjct: 185 VNHATLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPQGSGVNIVSYQKLL 244

Query: 241 SQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIY 300
           SQG S+  PF PPKPEDIATICYTSGTTGTPKG VLTHGNLI+NVAG S+  +F PSD Y
Sbjct: 245 SQGRSTLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFLPSDTY 304

Query: 301 MSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
           +SYLPLAHIYERANQI++VY GV VGFYQGD LKLMDD AVL+PTIF SVPRLYNRIY G
Sbjct: 305 ISYLPLAHIYERANQIMAVYGGVTVGFYQGDVLKLMDDFAVLRPTIFCSVPRLYNRIYDG 364

Query: 361 ITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGA 420
           IT+AVK+SG ++++LF  AYNSKKQAI++G+ PS  WD+LVFNKI+E+LGGRVRFMGSGA
Sbjct: 365 ITSAVKSSGVIKQRLFQVAYNSKKQAIINGRNPSAFWDKLVFNKIKEKLGGRVRFMGSGA 424

Query: 421 SPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVP 480
           SPLSPDVMDFL+VCFGC V EGYGMTETSC+ISA+D GDNLSGHVGSPNPACE+KLVDVP
Sbjct: 425 SPLSPDVMDFLRVCFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDVP 484

Query: 481 EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
           EMNYTS+DQP+PRGEICVRGPI+F+GYYK+E QTRE++DGDGWLHTGDIGLWLPGGRLKI
Sbjct: 485 EMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKI 544

Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWA 600
           IDRKKNIFKLAQGEY+APEKIENVY KC+FV QCFI+GDSFNS LVAIV+VDPDV+KDWA
Sbjct: 545 IDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPDVMKDWA 604

Query: 601 ASQGIK 606
           AS+GIK
Sbjct: 605 ASEGIK 610

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83320527|gb|ABC02882.1| ACS4 [Ricinus communis]

 Score =  987 bits (2551), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/607 (77%), Positives = 533/607 (87%), Gaps = 1/607 (0%)

Query: 1   MEDSSAQRRFKAVQRHL-TSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVY 59
           ME ++AQRR KA++ HL +ST  D  S L  N T   FV +Q YSV LPEKLQTGKWNVY
Sbjct: 1   MESTTAQRRLKAIRGHLISSTVDDHSSPLQANLTASEFVHNQTYSVVLPEKLQTGKWNVY 60

Query: 60  RSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEV 119
           RS RSPL LV RF DHPEI TLHDNF+ AVE + DYKYLGTR+R DGTVG Y WMTYGE 
Sbjct: 61  RSVRSPLKLVSRFHDHPEIATLHDNFVRAVETFQDYKYLGTRIRQDGTVGEYTWMTYGEA 120

Query: 120 SAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY 179
           + AR+ IGSGL +HG+QKG  +G++ +N+PEWLIVDHAC+AYSYISVPLYDTLGPDAVKY
Sbjct: 121 ATAREAIGSGLRYHGIQKGACVGIFFVNKPEWLIVDHACAAYSYISVPLYDTLGPDAVKY 180

Query: 180 VVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL 239
           VVNHA ++AIFC+P+T N LLSF++EIPSV LIVVVG  DE LPSLPST GVKLISY++L
Sbjct: 181 VVNHANVQAIFCVPETSNALLSFLAEIPSVQLIVVVGAVDEQLPSLPSTFGVKLISYMKL 240

Query: 240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDI 299
             +GCS+ QPF PPKPED+ATICYTSGTTGTPKG VLTHG+LI++VAGF L ++F PSDI
Sbjct: 241 LGEGCSNRQPFIPPKPEDVATICYTSGTTGTPKGVVLTHGSLIASVAGFCLAIKFNPSDI 300

Query: 300 YMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359
           Y+SYLPLAHIYER NQ+V VYYGVAVGFYQGDNLKLMDDLA L+PT+F SVPRLYNRIY 
Sbjct: 301 YISYLPLAHIYERTNQMVLVYYGVAVGFYQGDNLKLMDDLAALRPTLFCSVPRLYNRIYD 360

Query: 360 GITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSG 419
           GIT AVKASG LRE+LF AAYNSKKQAI+SG+ PS MWD+LVFNKIR +LGGRVRFMGSG
Sbjct: 361 GITKAVKASGVLRERLFRAAYNSKKQAIMSGRNPSPMWDKLVFNKIRGKLGGRVRFMGSG 420

Query: 420 ASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDV 479
           ASPLSPD+MDFL+VCFGCQV+EGYGMTETSC+IS +D GDNLSGHVGSPN ACEIKLVDV
Sbjct: 421 ASPLSPDIMDFLRVCFGCQVLEGYGMTETSCVISVMDLGDNLSGHVGSPNAACEIKLVDV 480

Query: 480 PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
           PEMNYT +DQP+PRGEICVRGP VF+GYYK+ VQTREV D DGW+HTGDIGLWLPGGRLK
Sbjct: 481 PEMNYTLDDQPYPRGEICVRGPTVFKGYYKDGVQTREVFDDDGWMHTGDIGLWLPGGRLK 540

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDW 599
           IIDRKKNIFKLAQGEY+APEKIENVY+KC+FV QCFIYGDSFNS LVA+VAVDPDVL+DW
Sbjct: 541 IIDRKKNIFKLAQGEYIAPEKIENVYSKCRFVSQCFIYGDSFNSFLVAVVAVDPDVLRDW 600

Query: 600 AASQGIK 606
           A S+GIK
Sbjct: 601 AVSEGIK 607

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20805875|gb|AAM28874.1|AF503757_1 long chain acyl-CoA synthetase 7 [Arabidopsis thaliana]

 Score =  986 bits (2549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/607 (75%), Positives = 528/607 (86%), Gaps = 4/607 (0%)

Query: 4   SSAQRRFKAVQRHL-TSTNTDRCSQLDYNHTTGC---FVQSQGYSVRLPEKLQTGKWNVY 59
           S  QRR + ++ H+ TS   D+ S L  N T      F +   YSV LPEKL TGKWNVY
Sbjct: 5   SPEQRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNVY 64

Query: 60  RSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEV 119
           RS RSP  LV RFPDHPEIGTLHDNF++AVE Y + KYLGTRVR DGT+G Y WMTYGE 
Sbjct: 65  RSKRSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEA 124

Query: 120 SAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY 179
           ++ R+ IGSGLLFHG+ +G  +GLY INRPEWL+VDHAC+AYS++SVPLYDTLGPDAVK+
Sbjct: 125 ASERQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKF 184

Query: 180 VVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL 239
           VVNHA ++AIFC+PQTLN LLSF++EIPS+ LIVVVGG DEHLPSLP  +GV ++SY +L
Sbjct: 185 VVNHANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKL 244

Query: 240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDI 299
            SQG SS  PF PPKPEDIATICYTSGTTGTPKG VLTHGNLI+NVAG S+  +F+PSD+
Sbjct: 245 LSQGRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSDV 304

Query: 300 YMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359
           Y+SYLPLAHIYERANQI+ VY GVAVGFYQGD  KLMDD AVL+PTIF SVPRLYNRIY 
Sbjct: 305 YISYLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYD 364

Query: 360 GITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSG 419
           GIT+AVK+SG ++++LF  AYNSKKQAI++G+TPS  WD+LVFNKI+E+LGGRVRFMGSG
Sbjct: 365 GITSAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSG 424

Query: 420 ASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDV 479
           ASPLSPDVMDFL++CFGC V EGYGMTETSC+ISA+D GDNLSGHVGSPNPACE+KLVDV
Sbjct: 425 ASPLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDV 484

Query: 480 PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
           PEMNYTS+DQP+PRGEICVRGPI+F+GYYK+E QTRE++DGDGWLHTGDIGLWLPGGRLK
Sbjct: 485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLK 544

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDW 599
           IIDRKKNIFKLAQGEY+APEKIENVY KC+FV QCFI+GDSFNS LVAIV+VDP+V+KDW
Sbjct: 545 IIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDW 604

Query: 600 AASQGIK 606
           AAS+GIK
Sbjct: 605 AASEGIK 611

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327099|ref|NP_198112.2| long-chain acyl-CoA synthetase 7 [Arabidopsis thaliana] gi|313471383|sp|Q8LKS5.2|LACS7_ARATH RecName: Full=Long chain acyl-CoA synthetase 7, peroxisomal gi|332006321|gb|AED93704.1| long-chain acyl-CoA synthetase 7 [Arabidopsis thaliana]

 Score =  986 bits (2549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/607 (75%), Positives = 528/607 (86%), Gaps = 4/607 (0%)

Query: 4   SSAQRRFKAVQRHL-TSTNTDRCSQLDYNHTTGC---FVQSQGYSVRLPEKLQTGKWNVY 59
           S  QRR + ++ H+ TS   D+ S L  N T      F +   YSV LPEKL TGKWNVY
Sbjct: 5   SPEQRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNVY 64

Query: 60  RSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEV 119
           RS RSP  LV RFPDHPEIGTLHDNF++AVE Y + KYLGTRVR DGT+G Y WMTYGE 
Sbjct: 65  RSKRSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEA 124

Query: 120 SAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY 179
           ++ R+ IGSGLLFHG+ +G  +GLY INRPEWL+VDHAC+AYS++SVPLYDTLGPDAVK+
Sbjct: 125 ASERQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKF 184

Query: 180 VVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL 239
           VVNHA ++AIFC+PQTLN LLSF++EIPS+ LIVVVGG DEHLPSLP  +GV ++SY +L
Sbjct: 185 VVNHANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKL 244

Query: 240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDI 299
            SQG SS  PF PPKPEDIATICYTSGTTGTPKG VLTHGNLI+NVAG S+  +F+PSD+
Sbjct: 245 LSQGRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSDV 304

Query: 300 YMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359
           Y+SYLPLAHIYERANQI+ VY GVAVGFYQGD  KLMDD AVL+PTIF SVPRLYNRIY 
Sbjct: 305 YISYLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYD 364

Query: 360 GITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSG 419
           GIT+AVK+SG ++++LF  AYNSKKQAI++G+TPS  WD+LVFNKI+E+LGGRVRFMGSG
Sbjct: 365 GITSAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSG 424

Query: 420 ASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDV 479
           ASPLSPDVMDFL++CFGC V EGYGMTETSC+ISA+D GDNLSGHVGSPNPACE+KLVDV
Sbjct: 425 ASPLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDV 484

Query: 480 PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
           PEMNYTS+DQP+PRGEICVRGPI+F+GYYK+E QTRE++DGDGWLHTGDIGLWLPGGRLK
Sbjct: 485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLK 544

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDW 599
           IIDRKKNIFKLAQGEY+APEKIENVY KC+FV QCFI+GDSFNS LVAIV+VDP+V+KDW
Sbjct: 545 IIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDW 604

Query: 600 AASQGIK 606
           AAS+GIK
Sbjct: 605 AASEGIK 611

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574400|ref|XP_003555336.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Glycine max]

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/603 (73%), Positives = 533/603 (88%), Gaps = 2/603 (0%)

Query: 5   SAQRRFKAVQRHLTSTNT--DRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSA 62
           +AQRR KA+  HLT+T T  D  S L+ N T G F   QGYSV LPEKLQTGKWNVYRS 
Sbjct: 6   AAQRRLKAIHAHLTATATADDSPSHLESNTTAGEFFSEQGYSVVLPEKLQTGKWNVYRSV 65

Query: 63  RSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAA 122
           RSPL LV +FP+HPEIGT+HDNF+ +V+ + DYKYLGTRVRVDGTVG YKWMTYGE   A
Sbjct: 66  RSPLQLVTKFPNHPEIGTMHDNFVRSVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTA 125

Query: 123 RKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVN 182
           R  IGSGL+++G+QKG  IGLY INRPEWLIVDHACSAYS++SVPLYDTLGPDAVKY+V+
Sbjct: 126 RSAIGSGLIYYGIQKGSSIGLYFINRPEWLIVDHACSAYSFVSVPLYDTLGPDAVKYIVS 185

Query: 183 HAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ 242
           HA ++ IFC+P+TLN LLS++S+IP+V LIVVVGG D+ +PS+PS++GV++I+Y +L +Q
Sbjct: 186 HAVVQVIFCVPETLNLLLSYLSDIPTVRLIVVVGGMDDQIPSVPSSTGVQVITYSKLLNQ 245

Query: 243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMS 302
           G S+ QPFCPPKP+DIATICYTSGTTGTPKGA+LTHGN I++VAG ++  +F PSD+Y+S
Sbjct: 246 GRSNLQPFCPPKPDDIATICYTSGTTGTPKGAILTHGNFIASVAGSTMDEKFGPSDVYIS 305

Query: 303 YLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGIT 362
           YLPLAHIYERANQ+++V++G+AVGFYQGD++KLMDD+A L+PT+F SVPRLYNRIYAGIT
Sbjct: 306 YLPLAHIYERANQVMTVHFGIAVGFYQGDSMKLMDDIAALRPTVFCSVPRLYNRIYAGIT 365

Query: 363 NAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASP 422
           NAVK SG L+E+LF AAYN+K+QA++ G+ PS MWDRLVFNKI+E+LGGRVRFM SGASP
Sbjct: 366 NAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRFMASGASP 425

Query: 423 LSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEM 482
           LSPD+M+FLK+CFGC+V EGYGMTE++C+IS ID+GD L GHVGSPN ACEIKLVDVPEM
Sbjct: 426 LSPDIMEFLKICFGCRVTEGYGMTESTCVISCIDEGDKLGGHVGSPNLACEIKLVDVPEM 485

Query: 483 NYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID 542
           NYTS+DQP+PRGEICVRGP+VF+GY+K+E QTR+VID DGWLHTGDIG WLPGGRLKIID
Sbjct: 486 NYTSDDQPNPRGEICVRGPLVFRGYHKDEAQTRDVIDEDGWLHTGDIGTWLPGGRLKIID 545

Query: 543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAAS 602
           RKKNIFKLAQGEY+APEKIENVYAKCKFV QCF+YGDS N+ LVA+V+VD D LK WAAS
Sbjct: 546 RKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNASLVAVVSVDHDNLKAWAAS 605

Query: 603 QGI 605
           +GI
Sbjct: 606 EGI 608

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	666
TAIR|locus:2143661	700	LACS7 "AT5G27600" [Arabidopsis	0.905	0.861	0.739	1.1e-254
TAIR|locus:2083013	701	LACS6 "AT3G05970" [Arabidopsis	0.903	0.858	0.728	9.3e-249
ZFIN|ZDB-GENE-050809-115	697	acsl1 "acyl-CoA synthetase lon	0.768	0.734	0.468	9.5e-121
UNIPROTKB|Q1LZF6	683	ACSL5 "Acyl-CoA synthetase lon	0.737	0.718	0.454	1.5e-119
UNIPROTKB|E2R463	698	ACSL5 "Uncharacterized protein	0.737	0.703	0.458	2.5e-119
UNIPROTKB|F1Q0U3	683	ACSL5 "Uncharacterized protein	0.737	0.718	0.458	2.5e-119
RGD|69403	697	Acsl6 "acyl-CoA synthetase lon	0.740	0.707	0.468	5.4e-118
ZFIN|ZDB-GENE-040801-88	729	zgc:101071 "zgc:101071" [Danio	0.741	0.677	0.448	1.4e-117
UNIPROTKB|G3V1S9	606	ACSL6 "Acyl-CoA synthetase lon	0.741	0.815	0.469	3e-117
UNIPROTKB|J3KPG3	708	ACSL6 "Long-chain-fatty-acid--	0.741	0.697	0.469	3e-117

TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)]

 Score = 2452 (868.2 bits), Expect = 1.1e-254, P = 1.1e-254
 Identities = 449/607 (73%), Positives = 518/607 (85%)

Query:     4 SSAQRRFKAVQRHL-TSTNTDRCSQLDYNHTTGC---FVQSQGYSVRLPEKLQTGKWNVY 59
             S  QRR + ++ H+ TS   D+ S L  N T      F +   YSV LPEKL TGKWNVY
Sbjct:     5 SPEQRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNVY 64

Query:    60 RSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLXXXXXXXXXXXXYKWMTYGEV 119
             RS RSP  LV RFPDHPEIGTLHDNF++AVE Y + KYL            Y WMTYGE 
Sbjct:    65 RSKRSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEA 124

Query:   120 SAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY 179
             ++ R+ IGSGLLFHG+ +G  +GLY INRPEWL+VDHAC+AYS++SVPLYDTLGPDAVK+
Sbjct:   125 ASERQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKF 184

Query:   180 VVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL 239
             VVNHA ++AIFC+PQTLN LLSF++EIPS+ LIVVVGG DEHLPSLP  +GV ++SY +L
Sbjct:   185 VVNHANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKL 244

Query:   240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDI 299
              SQG SS  PF PPKPEDIATICYTSGTTGTPKG VLTHGNLI+NVAG S+  +F+PSD+
Sbjct:   245 LSQGRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSDV 304

Query:   300 YMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359
             Y+SYLPLAHIYERANQI+ VY GVAVGFYQGD  KLMDD AVL+PTIF SVPRLYNRIY 
Sbjct:   305 YISYLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYD 364

Query:   360 GITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSG 419
             GIT+AVK+SG ++++LF  AYNSKKQAI++G+TPS  WD+LVFNKI+E+LGGRVRFMGSG
Sbjct:   365 GITSAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSG 424

Query:   420 ASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDV 479
             ASPLSPDVMDFL++CFGC V EGYGMTETSC+ISA+D GDNLSGHVGSPNPACE+KLVDV
Sbjct:   425 ASPLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDV 484

Query:   480 PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
             PEMNYTS+DQP+PRGEICVRGPI+F+GYYK+E QTRE++DGDGWLHTGDIGLWLPGGRLK
Sbjct:   485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLK 544

Query:   540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDW 599
             IIDRKKNIFKLAQGEY+APEKIENVY KC+FV QCFI+GDSFNS LVAIV+VDP+V+KDW
Sbjct:   545 IIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDW 604

Query:   600 AASQGIK 606
             AAS+GIK
Sbjct:   605 AASEGIK 611

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 2396 (848.5 bits), Expect = 9.3e-249, P = 9.3e-249
 Identities = 439/603 (72%), Positives = 513/603 (85%)

Query:     4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSAR 63
             ++A+RR  A+  HL  T++     L  N T G F    GYSV LPEKL TG WNVYRSA+
Sbjct:    10 AAARRRINAIHSHLV-TSSRSSPLLRSNPTAGEFCLDNGYSVVLPEKLNTGSWNVYRSAK 68

Query:    64 SPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLXXXXXXXXXXXXYKWMTYGEVSAAR 123
             SP  LV RFPDHP+I TLHDNF +AV ++ DYKYL            YKWMTYGE   AR
Sbjct:    69 SPFKLVSRFPDHPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTAR 128

Query:   124 KEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNH 183
               +GSGL+ HG+  G  +G+Y INRPEWLIVDHACS+YSY+SVPLYDTLGPDAVK++VNH
Sbjct:   129 TALGSGLVHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNH 188

Query:   184 AEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQG 243
             A ++AIFC+ +TLN+LLS +SE+PSV L+VVVGG  E LPSLPS+SGVK++SY  L +QG
Sbjct:   189 ATVQAIFCVAETLNSLLSCLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQG 248

Query:   244 CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSY 303
              S+PQ F PPKP+D+ATICYTSGTTGTPKG VLTH NLI+NVAG S  V+F+ SD+Y+SY
Sbjct:   249 RSNPQRFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAGSSFSVKFFSSDVYISY 308

Query:   304 LPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITN 363
             LPLAHIYERANQI++VY+GVAVGFYQGDN+KL+DDLA L+PT+F SVPRLYNRIYAGI N
Sbjct:   309 LPLAHIYERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIIN 368

Query:   364 AVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPL 423
             AVK SG L+E+LF AAYN+KKQA+++G++ S +WDRLVFNKI++RLGGRVRFM SGASPL
Sbjct:   369 AVKTSGGLKERLFNAAYNAKKQALLNGKSASPIWDRLVFNKIKDRLGGRVRFMTSGASPL 428

Query:   424 SPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMN 483
             SP+VM+FLKVCFG +V EGYGMTETSC+IS +D+GDNL+GHVGSPNPACE+KLVDVPEMN
Sbjct:   429 SPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMN 488

Query:   484 YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR 543
             YTS DQPHPRGEICVRGPI+F GYYK+E+QT+EVID DGWLHTGDIGLWLPGGRLKIIDR
Sbjct:   489 YTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDR 548

Query:   544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQ 603
             KKNIFKLAQGEY+APEKIENVYAKCKFV QCFIYGDSFNS LVA+V+VDPDVLK WAAS+
Sbjct:   549 KKNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASE 608

Query:   604 GIK 606
             GIK
Sbjct:   609 GIK 611

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

ZFIN|ZDB-GENE-050809-115 acsl1 "acyl-CoA synthetase long-chain family member 1" [Danio rerio (taxid:7955)]

 Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
 Identities = 249/532 (46%), Positives = 342/532 (64%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHG-LQKGVR-IGLYLINRPEWLIVDHACSAYSYISVPL 168
             YKW++Y EV+   +  GS LL  G  Q G + IG++  NRPEW I + AC  YS ++VPL
Sbjct:   118 YKWLSYKEVADRAEFAGSALLHRGHSQSGDKYIGIFAQNRPEWTISELACYTYSLVAVPL 177

Query:   169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFIS-EIPSVHLIVVVGGKDEHLPSLP 226
             YDTLG +A+ YV++ A I  I C I      +L  +S    SV  IV++   D  L +  
Sbjct:   178 YDTLGTEAISYVIDKASITTIICDIADKARLILDCVSGRKHSVTTIVIMESFDSELTAQA 237

Query:   227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA 286
                G+ +IS  +L++ G ++ +   PPKPED+A IC+TSGTTG PKGA+LTHGN++SN +
Sbjct:   238 QNCGIDIISLKELEAIGKANHKTPIPPKPEDLALICFTSGTTGNPKGAMLTHGNVVSNCS 297

Query:   287 GFSLMVQFY----PSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVL 342
              F  + + +     +DI++SYLPLAH++ER  + V + +G  +G++QGD   LMDDL  L
Sbjct:   298 AFIKITEVHCMLNQTDIHISYLPLAHMFERVVEGVLLCHGAKIGYFQGDIRLLMDDLKNL 357

Query:   343 KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT-PSKMWDRLV 401
             KPTIFP VPRL NR++  I    +A+  L+  L   A + K+  + SG      MWD+L+
Sbjct:   358 KPTIFPVVPRLLNRMFDKIFG--QANTPLKRWLLDFATSRKEAELKSGVVRKDSMWDKLI 415

Query:   402 FNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETS--CIISAIDKGD 459
             F+K++  LGGRVR M +GA+P+SP V+ FL+   GCQ  EGYG TE +  C +S    GD
Sbjct:   416 FSKVQASLGGRVRLMITGAAPVSPTVLTFLRAALGCQFYEGYGQTECTAGCTMSL--PGD 473

Query:   460 NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID 519
               +GHVG+P P   +KLVDV EMNY + +     GE+CV+GP VFQGY K+  QT   +D
Sbjct:   474 WTAGHVGAPLPCNFVKLVDVAEMNYFAANG---EGEVCVKGPNVFQGYLKDPEQTSGAVD 530

Query:   520 GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD 579
               GWLHTGDIG WLP G LKIIDRKK+IFKLAQGEY+APEKIEN+Y +   V Q F++GD
Sbjct:   531 KAGWLHTGDIGKWLPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYIRSDPVAQVFVHGD 590

Query:   580 SFNSCLVAIVAVDPDVLKDWAASQGIKVIYCFSFRANSHVIFIALIHNLCQL 631
             S  +CLV +V  DPD L  WA ++GI+    F+    S  +  A++ ++ QL
Sbjct:   591 SLQACLVGVVVPDPDFLPGWAKNRGIEG--SFNDLCKSKEVKNAILEDMIQL 640

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q1LZF6 ACSL5 "Acyl-CoA synthetase long-chain family member 5" [Bos taurus (taxid:9913)]

 Score = 1158 (412.7 bits), Expect = 1.5e-119, Sum P(2) = 1.5e-119
 Identities = 230/506 (45%), Positives = 324/506 (64%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
             Y+W++Y +VS   + +GS LL  G +      +G++  NRPEW+I + AC  YS ++VPL
Sbjct:   103 YRWLSYKQVSDRAEYLGSCLLHKGYKPSQESFVGIFAQNRPEWVISEFACYTYSMVAVPL 162

Query:   169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSL 225
             YDTLG +AV Y++N A+I  + C  PQ    L+S + +   P + L++++   ++ L   
Sbjct:   163 YDTLGAEAVIYIINKADIAMVICDTPQKALVLISNVEKGLTPGLKLVILMDPFEDDLKKR 222

Query:   226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                 GV+++S    ++ G  + +   PP PED++ IC+TSGTTG PKGA+LTH N++SN 
Sbjct:   223 GEKCGVEILSLFDAENLGKENFRKPVPPAPEDLSIICFTSGTTGDPKGAMLTHANIVSNA 282

Query:   286 AGFSLMVQ--FYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
             +GF   ++  F P+  D+ +SYLPLAH++ER  Q++   YG  VGF+QGD   L DD+  
Sbjct:   283 SGFLKCMEGVFEPNPEDVCISYLPLAHMFERIVQVIVFSYGAKVGFFQGDIRLLPDDMRT 342

Query:   342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP-SKMWDRL 400
             LKPT+FP+VPRL N++Y  + N  K    L++ L   A  SK + +  G      +WD+L
Sbjct:   343 LKPTLFPTVPRLLNKVYDKVQNEAKTP--LKKFLLNLAVASKFREVKRGIIRRDSLWDKL 400

Query:   401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
             +F KI+E LGG+VR + +GA+P+SP V+ FL+   GC V E YG TE +   +    GD 
Sbjct:   401 IFGKIQESLGGKVRLLITGAAPISPPVLTFLRAALGCLVFEAYGQTECTAGCTVTLPGDW 460

Query:   461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
              SGHVG P     +KL DVP+MNY + +     GEIC+RG  VF+GY K   +T+E +D 
Sbjct:   461 KSGHVGVPMACNHVKLEDVPDMNYFAVNN---EGEICIRGHNVFKGYLKEPEKTQETLDK 517

Query:   521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
             DGWLHTGDIG WLP G LK+IDRKKNIFKLAQGEY+APEKIE VY +   V Q F++G+S
Sbjct:   518 DGWLHTGDIGRWLPNGTLKVIDRKKNIFKLAQGEYIAPEKIETVYIRSSLVSQIFVHGES 577

Query:   581 FNSCLVAIVAVDPDVLKDWAASQGIK 606
               S LV +V  DPD L  +AA  G+K
Sbjct:   578 LQSFLVGVVVPDPDALPPFAAKIGVK 603

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E2R463 ACSL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1155 (411.6 bits), Expect = 2.5e-119, Sum P(2) = 2.5e-119
 Identities = 232/506 (45%), Positives = 323/506 (63%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHGLQKGV--RIGLYLINRPEWLIVDHACSAYSYISVPL 168
             YKW++Y +VS   + +GS LL  G +      +G++  NRPEW+I + AC  YS ++VPL
Sbjct:   120 YKWLSYRQVSDRAEYLGSCLLHKGYEPSSDQSVGIFAQNRPEWIISELACYTYSMVAVPL 179

Query:   169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSL 225
             YDTLG +A+ Y+VN A+I A+ C  PQ  +TL+  + +   P + +I+++   ++ L   
Sbjct:   180 YDTLGAEAIIYIVNKADIAAVICDTPQKASTLIENMEKGLTPGLKMIILMDPFEDDLKER 239

Query:   226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                 G++++S    +  G  + +   PP+PED++ IC+TSGTTG PKGA+LTH N+ISNV
Sbjct:   240 AEKCGIEILSLFDAEILGKENFRKPVPPRPEDLSIICFTSGTTGDPKGAMLTHQNIISNV 299

Query:   286 AGFSLMVQFY----PSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
             + F   +++     P D+ +SYLPLAH++ER  Q V    G  VGF+QGD   L +DL  
Sbjct:   300 SSFLKCMEYTFKPTPEDVTISYLPLAHMFERIVQAVIYSCGARVGFFQGDIRLLPEDLKT 359

Query:   342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP-SKMWDRL 400
             LKPT+FPSVPRL NRIY  + N  K    L++ L   A + K   +  G      +WD+L
Sbjct:   360 LKPTLFPSVPRLLNRIYDKVQNEAKTP--LKKFLLNLAISCKFNEVKKGIIRRDSIWDKL 417

Query:   401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
             +F KI+  LGGR+ F+ +GA+P+S  V+ FL+   GC V E YG TE +   +    GD 
Sbjct:   418 IFAKIQATLGGRINFVVTGAAPISSPVLMFLRAALGCPVFEAYGQTECTAGCTFTSPGDW 477

Query:   461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
              SGHVG P     +KL DVP+MNY S +     GEIC++G  VF+GY K+  +T+E +D 
Sbjct:   478 TSGHVGVPLACNHVKLEDVPDMNYFSVNN---EGEICIKGSNVFKGYLKDPEKTKEALDE 534

Query:   521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
             DGWLHTGDIG WLP G LKIIDRKKNIFKLAQGEY+APEKIEN+Y + + V Q F++GDS
Sbjct:   535 DGWLHTGDIGRWLPNGTLKIIDRKKNIFKLAQGEYIAPEKIENIYIRSRPVSQIFVHGDS 594

Query:   581 FNSCLVAIVAVDPDVLKDWAASQGIK 606
               S LV +V  DP+VL  + A  G+K
Sbjct:   595 LRSSLVGVVVPDPEVLPSFVAKLGVK 620

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1Q0U3 ACSL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1155 (411.6 bits), Expect = 2.5e-119, Sum P(2) = 2.5e-119
 Identities = 232/506 (45%), Positives = 323/506 (63%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHGLQKGV--RIGLYLINRPEWLIVDHACSAYSYISVPL 168
             YKW++Y +VS   + +GS LL  G +      +G++  NRPEW+I + AC  YS ++VPL
Sbjct:   103 YKWLSYRQVSDRAEYLGSCLLHKGYEPSSDQSVGIFAQNRPEWIISELACYTYSMVAVPL 162

Query:   169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSL 225
             YDTLG +A+ Y+VN A+I A+ C  PQ  +TL+  + +   P + +I+++   ++ L   
Sbjct:   163 YDTLGAEAIIYIVNKADIAAVICDTPQKASTLIENMEKGLTPGLKMIILMDPFEDDLKER 222

Query:   226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                 G++++S    +  G  + +   PP+PED++ IC+TSGTTG PKGA+LTH N+ISNV
Sbjct:   223 AEKCGIEILSLFDAEILGKENFRKPVPPRPEDLSIICFTSGTTGDPKGAMLTHQNIISNV 282

Query:   286 AGFSLMVQFY----PSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
             + F   +++     P D+ +SYLPLAH++ER  Q V    G  VGF+QGD   L +DL  
Sbjct:   283 SSFLKCMEYTFKPTPEDVTISYLPLAHMFERIVQAVIYSCGARVGFFQGDIRLLPEDLKT 342

Query:   342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP-SKMWDRL 400
             LKPT+FPSVPRL NRIY  + N  K    L++ L   A + K   +  G      +WD+L
Sbjct:   343 LKPTLFPSVPRLLNRIYDKVQNEAKTP--LKKFLLNLAISCKFNEVKKGIIRRDSIWDKL 400

Query:   401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
             +F KI+  LGGR+ F+ +GA+P+S  V+ FL+   GC V E YG TE +   +    GD 
Sbjct:   401 IFAKIQATLGGRINFVVTGAAPISSPVLMFLRAALGCPVFEAYGQTECTAGCTFTSPGDW 460

Query:   461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
              SGHVG P     +KL DVP+MNY S +     GEIC++G  VF+GY K+  +T+E +D 
Sbjct:   461 TSGHVGVPLACNHVKLEDVPDMNYFSVNN---EGEICIKGSNVFKGYLKDPEKTKEALDE 517

Query:   521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
             DGWLHTGDIG WLP G LKIIDRKKNIFKLAQGEY+APEKIEN+Y + + V Q F++GDS
Sbjct:   518 DGWLHTGDIGRWLPNGTLKIIDRKKNIFKLAQGEYIAPEKIENIYIRSRPVSQIFVHGDS 577

Query:   581 FNSCLVAIVAVDPDVLKDWAASQGIK 606
               S LV +V  DP+VL  + A  G+K
Sbjct:   578 LRSSLVGVVVPDPEVLPSFVAKLGVK 603

GO:0003824 "catalytic activity" evidence=IEA

RGD|69403 Acsl6 "acyl-CoA synthetase long-chain family member 6" [Rattus norvegicus (taxid:10116)]

 Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
 Identities = 239/510 (46%), Positives = 331/510 (64%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
             Y+W++Y EV+   + +GSGLL H  + G    IG++  NRPEW+I + AC  YS + VPL
Sbjct:   118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPL 177

Query:   169 YDTLGPDAVKYVVNHAEI-EAIFCIPQTLNTLLSFIS--EIPSVHLIVVVGGKDEHLPSL 225
             YDTLGP +++Y++N A+I   I   P     LL  +   E P + L++++   D+ L   
Sbjct:   178 YDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRER 237

Query:   226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                 GV + S   ++  G  + +   PP+P+D++ +C+TSGTTG PKGA+LTHGN++++ 
Sbjct:   238 GKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297

Query:   286 AGFSLMV--QFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
             +GF  +   Q+ P+  D++ SYLPLAH++ER  Q V   +G  VGF+QGD   L DD+  
Sbjct:   298 SGFLKVTESQWAPTCADVHFSYLPLAHMFERMVQSVVYCHGGRVGFFQGDIRLLSDDMKA 357

Query:   342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK-MWDRL 400
             L+PTIFP VPRL NR+Y  I +  +A  +L+  L   A   K+  + SG   +  +WD L
Sbjct:   358 LRPTIFPVVPRLLNRMYDKIFH--QADTSLKRWLLEFAAKRKQAEVRSGIIRNNSIWDEL 415

Query:   401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
              FNKI+  LGG VR + +GA+P SP V+ FL+   GCQV EGYG TE +   +    GD 
Sbjct:   416 FFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDW 475

Query:   461 LSGHVGSPNPACEIKLVDVPEMNY-TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID 519
              SGHVG+P P   IKLVD  E+NY TS+ +    GEICV+GP VF+GY K+E +T+E +D
Sbjct:   476 TSGHVGAPLPCNHIKLVDAEELNYWTSKGE----GEICVKGPNVFKGYLKDEDRTKEALD 531

Query:   520 GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD 579
              DGWLHTGDIG WLP G LKIIDRKK+IFKLAQGEYVAPEKIEN+Y + + V Q +++GD
Sbjct:   532 SDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHGD 591

Query:   580 SFNSCLVAIVAVDPDVLKDWAASQGIKVIY 609
             S  + LV IV  DP+V+  WA  +GI+  Y
Sbjct:   592 SLKAFLVGIVVPDPEVMPCWAQKKGIEGNY 621

GO:0001666 "response to hypoxia" evidence=IEP

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IGI;ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IGI

GO:0007405 "neuroblast proliferation" evidence=IEA;ISO

GO:0007584 "response to nutrient" evidence=IEP

GO:0008654 "phospholipid biosynthetic process" evidence=IMP

GO:0009629 "response to gravity" evidence=IEP

GO:0010747 "positive regulation of plasma membrane long-chain fatty acid transport" evidence=IMP

GO:0010867 "positive regulation of triglyceride biosynthetic process" evidence=IGI

GO:0010976 "positive regulation of neuron projection development" evidence=IMP

GO:0015908 "fatty acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0032869 "cellular response to insulin stimulus" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO;IDA

GO:0048545 "response to steroid hormone stimulus" evidence=IEP

GO:0048666 "neuron development" evidence=IEP

ZFIN|ZDB-GENE-040801-88 zgc:101071 "zgc:101071" [Danio rerio (taxid:7955)]

 Score = 1158 (412.7 bits), Expect = 1.4e-117, P = 1.4e-117
 Identities = 228/508 (44%), Positives = 325/508 (63%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHGLQKG--VRIGLYLINRPEWLIVDHACSAYSYISVPL 168
             Y+W++Y EV    + +GS  L  G  K     IG++  NRPEW I + AC  YS ISVPL
Sbjct:   118 YEWLSYSEVIERAEHLGSAFLHKGHSKSGDPYIGIFSQNRPEWTIAELACYTYSLISVPL 177

Query:   169 YDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFIS-EIPSVHLIVVVGGKDEHLPSLP 226
             YDTLG +A+ Y+++   I  + C +P+    LL  +S    SV  ++++   D  L S  
Sbjct:   178 YDTLGTEAISYILDKTCISTVVCDVPEKAGLLLECVSGRQHSVKTLILMADVDADLQSRA 237

Query:   227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA 286
                G++++S    ++ G +  +   PP+P+D+A IC+TSGTTG PKGA+LTH N++SN++
Sbjct:   238 QQCGIQIMSLTDAENMGKTHRRQPEPPQPDDLAVICFTSGTTGNPKGAMLTHRNIVSNIS 297

Query:   287 GFSLMVQ----FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVL 342
              F  +          D ++SYLPLAH++ER  Q V + +G  +G++QGD   LMDDL  L
Sbjct:   298 AFIHVTNSTCPLSSRDSHISYLPLAHMFERVVQGVVLLHGARIGYFQGDIRVLMDDLIAL 357

Query:   343 KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG-QTPSKMWDRLV 401
             KPTIFP VPRL NR++  I    +A+  L+ +L   A+  K+  + SG      +WD+++
Sbjct:   358 KPTIFPVVPRLLNRMFDKIYG--QANTPLKRRLLEFAFRRKEAEMKSGIMRRDSIWDKII 415

Query:   402 FNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNL 461
             F K++  +GG VR M +GA+P+S  V+ FL+   GCQ  EGYG TE +   +    GD  
Sbjct:   416 FKKVQASVGGCVRMMVTGAAPISEPVLTFLRAALGCQFYEGYGQTECTAGSTTTLPGDWT 475

Query:   462 SGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGD 521
             +GHVG+P P  +IKLVDV EMNY + +     GE+CVRGP  F+GY K+  +T+E +D +
Sbjct:   476 AGHVGAPLPCNDIKLVDVAEMNYYAANG---EGEVCVRGPNAFKGYLKDPEKTKEALDEE 532

Query:   522 GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF 581
             GW+HTGDIG WLP G LKI+DRKK+IFKLAQGEY+APEKIEN+Y + + V+Q F++GDS 
Sbjct:   533 GWVHTGDIGRWLPNGSLKIVDRKKHIFKLAQGEYIAPEKIENIYIRSEAVVQAFVHGDSL 592

Query:   582 NSCLVAIVAVDPDVLKDWAASQGIKVIY 609
              +CLVAI+  DPD L  WA  +GI+  Y
Sbjct:   593 QACLVAIIVPDPDFLPGWAKKRGIEGTY 620

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|G3V1S9 ACSL6 "Acyl-CoA synthetase long-chain family member 6, isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
 Identities = 239/509 (46%), Positives = 327/509 (64%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
             Y+W++Y EV+   + +GSGLL H  +      IG++  NRPEW+IV+ AC  YS + VPL
Sbjct:    27 YQWLSYQEVADRAEFLGSGLLQHNCKACTDQFIGVFAQNRPEWIIVELACYTYSMVVVPL 86

Query:   169 YDTLGPDAVKYVVNHAEIEAIFCI-PQTLNTLLSFIS--EIPSVHLIVVVGGKDEHLPSL 225
             YDTLGP A++Y++N A+I  +    PQ    LL  +   E P + LI+++   +E L   
Sbjct:    87 YDTLGPGAIRYIINTADISTVIVDKPQKAVLLLEHVERKETPGLKLIILMDPFEEALKER 146

Query:   226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                 GV + S   ++  G  + Q   PP+P+D++ +C+TSGTTG PKGA+LTHGN++++ 
Sbjct:   147 GQKCGVVIKSMQAVEDCGQENHQAPVPPQPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 206

Query:   286 AGFSLMVQ--FYP--SDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
             +GF  + +   +P   D+ +S+LPLAH++ER  Q V   +G  VGF+QGD   L DD+  
Sbjct:   207 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 266

Query:   342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS-KMWDRL 400
             L PTIFP VPRL NR+Y  I +  +A+  L+  L   A   K+  + SG   +  +WD L
Sbjct:   267 LCPTIFPVVPRLLNRMYDKIFS--QANTPLKRWLLEFAAKRKQAEVRSGIIRNDSIWDEL 324

Query:   401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
              FNKI+  LGG VR + +GA+P SP V+ FL+   GCQV EGYG TE +   +    GD 
Sbjct:   325 FFNKIQASLGGCVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDW 384

Query:   461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
              SGHVG+P P   IKLVDV E+NY +       GEICVRGP VF+GY K+  +T+E +D 
Sbjct:   385 TSGHVGAPLPCNHIKLVDVEELNYWA---CKGEGEICVRGPNVFKGYLKDPDRTKEALDS 441

Query:   521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
             DGWLHTGDIG WLP G LKIIDRKK+IFKLAQGEYVAPEKIEN+Y + + V Q +++GDS
Sbjct:   442 DGWLHTGDIGKWLPAGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSQPVAQIYVHGDS 501

Query:   581 FNSCLVAIVAVDPDVLKDWAASQGIKVIY 609
               + LV IV  DP+V+  WA  +GI+  Y
Sbjct:   502 LKAFLVGIVVPDPEVMPSWAQKRGIEGTY 530

GO:0001666 "response to hypoxia" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IEA

GO:0007405 "neuroblast proliferation" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0009629 "response to gravity" evidence=IEA

GO:0010747 "positive regulation of plasma membrane long-chain fatty acid transport" evidence=IEA

GO:0010867 "positive regulation of triglyceride biosynthetic process" evidence=IEA

GO:0010976 "positive regulation of neuron projection development" evidence=IEA

GO:0015908 "fatty acid transport" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0048545 "response to steroid hormone stimulus" evidence=IEA

GO:0048666 "neuron development" evidence=IEA

UNIPROTKB|J3KPG3 ACSL6 "Long-chain-fatty-acid--CoA ligase 6" [Homo sapiens (taxid:9606)]

 Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
 Identities = 239/509 (46%), Positives = 327/509 (64%)

Query:   111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVR--IGLYLINRPEWLIVDHACSAYSYISVPL 168
             Y+W++Y EV+   + +GSGLL H  +      IG++  NRPEW+IV+ AC  YS + VPL
Sbjct:   129 YQWLSYQEVADRAEFLGSGLLQHNCKACTDQFIGVFAQNRPEWIIVELACYTYSMVVVPL 188

Query:   169 YDTLGPDAVKYVVNHAEIEAIFCI-PQTLNTLLSFIS--EIPSVHLIVVVGGKDEHLPSL 225
             YDTLGP A++Y++N A+I  +    PQ    LL  +   E P + LI+++   +E L   
Sbjct:   189 YDTLGPGAIRYIINTADISTVIVDKPQKAVLLLEHVERKETPGLKLIILMDPFEEALKER 248

Query:   226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                 GV + S   ++  G  + Q   PP+P+D++ +C+TSGTTG PKGA+LTHGN++++ 
Sbjct:   249 GQKCGVVIKSMQAVEDCGQENHQAPVPPQPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 308

Query:   286 AGFSLMVQ--FYP--SDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAV 341
             +GF  + +   +P   D+ +S+LPLAH++ER  Q V   +G  VGF+QGD   L DD+  
Sbjct:   309 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 368

Query:   342 LKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS-KMWDRL 400
             L PTIFP VPRL NR+Y  I +  +A+  L+  L   A   K+  + SG   +  +WD L
Sbjct:   369 LCPTIFPVVPRLLNRMYDKIFS--QANTPLKRWLLEFAAKRKQAEVRSGIIRNDSIWDEL 426

Query:   401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
              FNKI+  LGG VR + +GA+P SP V+ FL+   GCQV EGYG TE +   +    GD 
Sbjct:   427 FFNKIQASLGGCVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDW 486

Query:   461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
              SGHVG+P P   IKLVDV E+NY +       GEICVRGP VF+GY K+  +T+E +D 
Sbjct:   487 TSGHVGAPLPCNHIKLVDVEELNYWA---CKGEGEICVRGPNVFKGYLKDPDRTKEALDS 543

Query:   521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS 580
             DGWLHTGDIG WLP G LKIIDRKK+IFKLAQGEYVAPEKIEN+Y + + V Q +++GDS
Sbjct:   544 DGWLHTGDIGKWLPAGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSQPVAQIYVHGDS 603

Query:   581 FNSCLVAIVAVDPDVLKDWAASQGIKVIY 609
               + LV IV  DP+V+  WA  +GI+  Y
Sbjct:   604 LKAFLVGIVVPDPEVMPSWAQKRGIEGTY 632

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LKS5	LACS7_ARATH	6, ., 2, ., 1, ., 3	0.7545	0.9054	0.8614	yes	no
Q9JID6	ACSL1_CAVPO	6, ., 2, ., 1, ., 3	0.4240	0.8453	0.8065	yes	no
Q8LPS1	LACS6_ARATH	6, ., 2, ., 1, ., 3	0.75	0.8933	0.8487	no	no
Q9P7D7	LCF2_SCHPO	6, ., 2, ., 1, ., 3	0.3131	0.8303	0.8026	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.976
3rd Layer	6.2.1.3	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	666
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	1e-163
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-160
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-152
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	1e-140
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-139
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-131
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-113
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	1e-99
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	7e-99
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-88
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-68
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	4e-68
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	6e-66
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	1e-59
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	8e-54
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	2e-53
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-52
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	5e-48
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	2e-46
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	3e-46
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	4e-43
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-41
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	7e-41
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	7e-41
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-39
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	2e-39
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-38
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	3e-38
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-37
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	7e-37
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-35
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-34
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	7e-34
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	2e-33
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-32
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	2e-32
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-32
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	1e-31
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	3e-31
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	8e-31
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	1e-30
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-30
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-30
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	9e-29
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-28
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-28
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	4e-28
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	7e-28
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	7e-28
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	1e-27
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	3e-27
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	5e-27
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	3e-26
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	4e-26
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	5e-26
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	1e-25
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	3e-25
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	2e-24
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	2e-24
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	3e-24
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	6e-24
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	8e-24
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	8e-24
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-23
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	1e-22
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	1e-22
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-22
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	4e-22
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	5e-22
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	8e-22
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	2e-21
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-21
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	4e-21
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-20
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	7e-20
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-19
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	6e-19
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	1e-18
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-18
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	2e-18
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	4e-18
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	7e-18
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-17
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	3e-17
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	5e-17
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	8e-17
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-16
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-16
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-16
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	3e-16
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	9e-16
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	1e-15
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	2e-15
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	3e-15
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	5e-15
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	5e-15
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	9e-15
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	1e-14
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-14
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-14
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	3e-14
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	8e-14
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	1e-13
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	3e-13
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	4e-13
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	7e-13
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	1e-12
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-12
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-12
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	3e-12
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	8e-12
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	1e-11
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	1e-11
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-11
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	3e-11
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	3e-11
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	5e-11
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	5e-11
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	9e-11
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	1e-10
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	1e-10
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	2e-10
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	2e-10
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	2e-10
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-10
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	4e-10
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	6e-10
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-09
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	2e-09
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-09
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	3e-09
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	4e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	6e-09
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	7e-09
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	8e-09
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	9e-09
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	1e-08
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-08
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	2e-08
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-08
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	3e-08
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	3e-08
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	6e-08
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	6e-08
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	7e-08
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	7e-08
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	1e-07
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-07
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-07
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	2e-07
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	4e-07
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	4e-07
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	4e-07
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	7e-07
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	2e-06
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-06
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	4e-06
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-06
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	4e-06
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	4e-06
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	5e-06
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	6e-06
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	9e-06
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	1e-05
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-05
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-05
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	1e-05
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	1e-05
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	1e-05
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	1e-05
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-05
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	3e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	3e-05
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	3e-05
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	4e-05
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	4e-05
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	4e-05
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	6e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-04
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-04
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	2e-04
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	2e-04
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	2e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-04
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	3e-04
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	3e-04
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	3e-04
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-04
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	5e-04
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	6e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	6e-04
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	0.001
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	0.001
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.001
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	0.001
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	0.001
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	0.002
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	0.003
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	0.003
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	0.004
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	0.004
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	0.004

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 1188 bits (3075), Expect = 0.0
 Identities = 463/570 (81%), Positives = 517/570 (90%)

Query: 37  FVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYK 96
           FV  QGYSV LPEKLQTGKWNVYRSARSPL LV RFPDHPEIGTLHDNF+YAVE + DYK
Sbjct: 2   FVHEQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYK 61

Query: 97  YLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156
           YLGTR+RVDGTVG YKWMTYGE   AR  IGSGL+ HG+ KG  +GLY INRPEWLIVDH
Sbjct: 62  YLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDH 121

Query: 157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVG 216
           ACSAYSY+SVPLYDTLGPDAVK++VNHAE+ AIFC+PQTLNTLLS +SEIPSV LIVVVG
Sbjct: 122 ACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVG 181

Query: 217 GKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVL 276
           G DE LPSLPS +GV++++Y +L +QG SSPQPF PPKPED+ATICYTSGTTGTPKG VL
Sbjct: 182 GADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVL 241

Query: 277 THGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLM 336
           THGNLI+NVAG SL  +FYPSD+++SYLPLAHIYER NQIV ++YGVAVGFYQGDNLKLM
Sbjct: 242 THGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLM 301

Query: 337 DDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM 396
           DDLA L+PTIF SVPRLYNRIY GITNAVK SG L+E+LF AAYN+KKQA+ +G+ PS M
Sbjct: 302 DDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPM 361

Query: 397 WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAID 456
           WDRLVFNKI+ +LGGRVRFM SGASPLSPDVM+FL++CFG +V+EGYGMTETSC+IS +D
Sbjct: 362 WDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMD 421

Query: 457 KGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTRE 516
           +GDNLSGHVGSPNPACE+KLVDVPEMNYTSEDQP+PRGEICVRGPI+F+GYYK+EVQTRE
Sbjct: 422 EGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTRE 481

Query: 517 VIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
           VID DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY+APEKIENVYAKCKFV QCF+
Sbjct: 482 VIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFV 541

Query: 577 YGDSFNSCLVAIVAVDPDVLKDWAASQGIK 606
           YGDS NS LVA+V VDP+VLK WAAS+GIK
Sbjct: 542 YGDSLNSSLVAVVVVDPEVLKAWAASEGIK 571

Length = 651

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  708 bits (1830), Expect = 0.0
 Identities = 253/501 (50%), Positives = 318/501 (63%), Gaps = 41/501 (8%)

Query: 109 GGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPL 168
           G Y+W++Y EV      IGSGL   GL+ G +IG++  NRPEW+I + AC + S + VPL
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPST 228
           YDTLG +A++Y++N  EI  +FC                                     
Sbjct: 61  YDTLGEEAIEYILNETEISIVFC------------------------------------- 83

Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
             VK+ S+ +L+  G  +  P  PPKPED+ATI YTSGTTG PKG +LTHGN+++ VAG 
Sbjct: 84  DAVKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGI 143

Query: 289 SLMV--QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTI 346
           + +V     P+D+Y+SYLPLAHI+ER  + V +Y G  +G+Y GD   L  D+  LKPT+
Sbjct: 144 NKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKELKPTV 203

Query: 347 FPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ-TPSKMWDRLVFNKI 405
           F  VPR+ +RIY GI   V A G L+  LF  AYN K  A+  G    S +WD+LVF KI
Sbjct: 204 FVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKLVFKKI 263

Query: 406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV 465
           +  LGGRVR M SG +PLSPD  +FL+V  GC V++GYG+TET    +  D GD  +GHV
Sbjct: 264 KAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGHV 323

Query: 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLH 525
           G P P CEIKLVDVPEM Y ++D P PRGEIC+RGP VF+GYYKN  +T E  D DGW H
Sbjct: 324 GPPLPCCEIKLVDVPEMGYFAKDDP-PRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFH 382

Query: 526 TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCL 585
           TGDIG WLP G LKIIDRKKN+FKL+QGEYVA EK+EN+Y     V Q  +YGDS  S L
Sbjct: 383 TGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLKSFL 442

Query: 586 VAIVAVDPDVLKDWAASQGIK 606
           VAIV  D DVL+ WAA  G  
Sbjct: 443 VAIVVPDEDVLEKWAAENGGG 463

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  483 bits (1244), Expect = e-163
 Identities = 247/561 (44%), Positives = 320/561 (57%), Gaps = 19/561 (3%)

Query: 58  VYRSARSPLTLVDRFPD-HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTY 116
           VYR+  S       FP    +I T  D F  +VE YPD K LG R  VDG VG Y W TY
Sbjct: 24  VYRNLLSK----KGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTY 79

Query: 117 GEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDA 176
            EV     +IGS L   G + G R+G+Y  N P+W++   AC+A+S I VPLYDTLGP A
Sbjct: 80  KEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGA 139

Query: 177 VKYVVNHAEIEAIFCIPQTLNTLLSF-ISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235
           V Y+V+HAEI+ +F   + +  LL         +  IV      E      S  GVK  S
Sbjct: 140 VDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYS 199

Query: 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL-MVQF 294
           ++     G  +P    PPKP DI TI YTSGT+G PKG VLTH  + + V G  L M QF
Sbjct: 200 WIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQF 259

Query: 295 ----YPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSV 350
                  D+Y+S+LPLAHI +R  +      G +VG+Y GD   L DDL  LKPT+   V
Sbjct: 260 EDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGV 319

Query: 351 PRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG---QTPSKMWDRLVFNKIRE 407
           PR++ RI+ GI  A++     R  +F A Y  K   +  G   +  S M D L F K++ 
Sbjct: 320 PRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKA 379

Query: 408 RLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS--GHV 465
           +LGGR+R + SG +PLS ++ +FL+V     V++GYG+TET    + +   D +   G V
Sbjct: 380 KLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET-LGPTTLGFPDEMCMLGTV 438

Query: 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLH 525
           G+P    E++L +VPEM Y    +P PRGEICVRG  +F GYYKN   T EV+  DGW H
Sbjct: 439 GAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGYYKNPELTEEVMK-DGWFH 496

Query: 526 TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCL 585
           TGDIG  LP G LKIIDRKKN+ KL+QGEYVA E +ENVY +   V   ++YGDSF S L
Sbjct: 497 TGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSML 556

Query: 586 VAIVAVDPDVLKDWAASQGIK 606
           VA+V  + +    WA   G  
Sbjct: 557 VAVVVPNEENTNKWAKDNGFT 577

Length = 660

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  474 bits (1221), Expect = e-160
 Identities = 194/533 (36%), Positives = 285/533 (53%), Gaps = 35/533 (6%)

Query: 85  FIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLY 144
               V++ PD   L  +       GG++ +TY E+    + + SGLL  G+  G R+ ++
Sbjct: 22  LAERVKDRPDGVALMYKEL-----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIF 76

Query: 145 LINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC-IPQTLNTLLSFI 203
             NRPEW I D A  A   +SVP+Y T  P+ + Y++N +E + IF    + L+ +L  +
Sbjct: 77  AANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVL 136

Query: 204 SEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI-SYLQLQSQGCSSPQPFC---PPKPEDIA 259
            + P V  ++V+   D    ++ + + V  +     +      S        PPKP+D+A
Sbjct: 137 EDCPKVVDLIVI--IDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLA 194

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY-PSDIYMSYLPLAHIYERANQIVS 318
           TI YTSGTTGTPKG +LTH NL++ VAG   ++    P D  +S+LPLAHI+ERA +   
Sbjct: 195 TIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGL 254

Query: 319 VYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTA 378
             YG     ++ D   L++DL  ++PT+   VPR++ ++Y GI   V  +  +R KLF  
Sbjct: 255 ALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRW 314

Query: 379 AYNSKKQ----AIVSGQTPSKM--WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK 432
           A     +    A++ G   S +   DRLVF KIR+ LGGR+R+  SG +PLSP+++ F +
Sbjct: 315 ALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR 374

Query: 433 VCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP 492
              G  ++EGYG+TETS ++S       + G VG P P  E+K+ D              
Sbjct: 375 SL-GIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD-------------- 419

Query: 493 RGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQ 552
            GEI VRGP V +GYYKN   T E    DGW  TGD+G     G L I  RKK + KL+ 
Sbjct: 420 DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSN 479

Query: 553 GEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGI 605
           G+ +APE IE+  AK   + Q  + GD     LVA++  D D L+ WA S   
Sbjct: 480 GKNIAPEPIESKLAKSPLIEQICVVGDD-KKFLVALIVPDFDALEKWAESLNK 531

Length = 613

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  456 bits (1174), Expect = e-152
 Identities = 241/560 (43%), Positives = 324/560 (57%), Gaps = 26/560 (4%)

Query: 58  VYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYG 117
           VYRS  +   L+D  P   +I +    F  AV+ YP+ + LG R   D  VG Y W+TY 
Sbjct: 25  VYRSIYAKDGLLD-LPA--DIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYK 81

Query: 118 EVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAV 177
           EV  A   IGS +   G+  G R G+Y  N PEW+I   AC++     VPLYDTLG +AV
Sbjct: 82  EVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAV 141

Query: 178 KYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHL--IVVVGGKDEHLPSLPSTSGVKLIS 235
           ++++NHAE+   F     ++++LS + +  S +L  IV  G             GV   S
Sbjct: 142 EFIINHAEVSIAFVQESKISSILSCLPKCSS-NLKTIVSFGDVSSEQKEEAEELGVSCFS 200

Query: 236 ---YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
              +  + S  C  P    P +  DI TI YTSGTTG PKG +LT+  +I+ V     ++
Sbjct: 201 WEEFSLMGSLDCELP----PKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLL 256

Query: 293 QFY-----PSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIF 347
           +         D Y SYLPLAH+Y++  +   +  G ++GF+QGD   LM+D+  LKPTIF
Sbjct: 257 KVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIF 316

Query: 348 PSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG---QTPSKMWDRLVFNK 404
             VPR+Y+RIY GI   + + G LR+KLF  AYN K   +  G   +  S   DRLVF+K
Sbjct: 317 CGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDK 376

Query: 405 IRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS-- 462
           I+E LGGRVR + SGA+PL   V +FL+V     + +GYG+TE SC        +  S  
Sbjct: 377 IKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTE-SCGGCFTSIANVFSMV 435

Query: 463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG 522
           G VG P    E +L  VPEM Y +     PRGEIC+RG  +F GY+K +  T EV+  DG
Sbjct: 436 GTVGVPMTTIEARLESVPEMGYDALSDV-PRGEICLRGNTLFSGYHKRQDLTEEVLI-DG 493

Query: 523 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN 582
           W HTGDIG W P G +KIIDRKKNIFKL+QGEYVA E +EN Y++C  +   ++YG+SF 
Sbjct: 494 WFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFE 553

Query: 583 SCLVAIVAVDPDVLKDWAAS 602
           S LVA+V  D   L+DWAA+
Sbjct: 554 SFLVAVVVPDRQALEDWAAN 573

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  425 bits (1093), Expect = e-140
 Identities = 230/563 (40%), Positives = 333/563 (59%), Gaps = 25/563 (4%)

Query: 58  VYRSARSPLTLVDRFPDHPE-IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTY 116
           VYRS  +     D FP+  E + +  D F  +VE YP+   LG R  VDG  G Y W TY
Sbjct: 27  VYRSIFAK----DGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTY 82

Query: 117 GEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDA 176
            EV     ++G+ L   G++   + G+Y  N PEW+I   AC+A+    VPLYDTLG  A
Sbjct: 83  QEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGA 142

Query: 177 VKYVVNHAEIEAIFC----IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232
           V+++++H+E+  +F     I +   T  +    + +V   V  GG          T G+ 
Sbjct: 143 VEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTV---VSFGGVSREQKEEAETFGLV 199

Query: 233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF---- 288
           + ++ +    G          K  DI TI YTSGTTG PKG ++++ ++++ +AG     
Sbjct: 200 IYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLL 259

Query: 289 -SLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIF 347
            S        D+Y+SYLPLAHI++R  +   + +G A+GF++GD   L++DL  LKPTIF
Sbjct: 260 KSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIF 319

Query: 348 PSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT---PSKMWDRLVFNK 404
            +VPR+ +R+Y+G+   +   G L++ +F +A++ K   +  GQ+    S + D+LVFNK
Sbjct: 320 CAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNK 379

Query: 405 IRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS-- 462
           +++ LGG VR + SGA+PL+  V  FL+V   C V++GYG+TE SC  + +   D L   
Sbjct: 380 VKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTE-SCAGTFVSLPDELDML 438

Query: 463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG 522
           G VG P P  +I+L  VPEM Y +     PRGEIC+RG  +F GYYK E  T+EV+  DG
Sbjct: 439 GTVGPPVPNVDIRLESVPEMEYDALAST-PRGEICIRGKTLFSGYYKREDLTKEVLI-DG 496

Query: 523 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN 582
           WLHTGD+G W P G +KIIDRKKNIFKL+QGEYVA E IEN+Y + + V   ++YG+SF 
Sbjct: 497 WLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFE 556

Query: 583 SCLVAIVAVDPDVLKDWAASQGI 605
           S LVAI   +  +L+ WAA  G+
Sbjct: 557 SFLVAIANPNQQILERWAAENGV 579

Length = 666

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  414 bits (1066), Expect = e-139
 Identities = 164/499 (32%), Positives = 245/499 (49%), Gaps = 106/499 (21%)

Query: 109 GGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPL 168
           G ++ +T+ E++   + + +GL+  G++ G R+ +   NRPEW+I D A  A   + VP+
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60

Query: 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPST 228
           Y T  P+ V Y++N                                              
Sbjct: 61  YPTSSPEEVAYILND--------------------------------------------- 75

Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
           SG +++               F   KP+D+AT+ YTSGTTG PKG +LTH NL++  A  
Sbjct: 76  SGARVV---------------FVEDKPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAAL 120

Query: 289 SLMVQFYPSDIYMSYLPLAHIYE-RANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIF 347
             ++   P D  +S+LPLAH++E R  + + +  G  V F +     L++DL  ++PT+F
Sbjct: 121 LEVIPLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAESPE-TLLEDLREVRPTVF 179

Query: 348 PSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRE 407
            +VPR++ +IYAGI   V A+G L+ KLF  A                            
Sbjct: 180 FAVPRVWEKIYAGIEAKVAAAGPLKRKLFRWA---------------------------- 211

Query: 408 RLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGS 467
             GGR+RF  SG +PL P+V++F +   G  ++EGYG+TETS + +    GD   G VG 
Sbjct: 212 LGGGRLRFAVSGGAPLPPEVLEFFRA-LGIPILEGYGLTETSGVATVNRPGDIRIGTVGK 270

Query: 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG 527
           P P  E+++ +               GEI VRGP V +GYYKN   T E +D DGWLHTG
Sbjct: 271 PLPGVEVRIAED--------------GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTG 316

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVA 587
           DIG     G L I DRKK++   A G+ +AP+ IEN      ++ Q  + GD     L A
Sbjct: 317 DIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVGDD-RPYLTA 375

Query: 588 IVAVDPDVLKDWAASQGIK 606
           ++ +DP+ L+ WA   G+ 
Sbjct: 376 LIVLDPEALEKWAEQHGLP 394

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  402 bits (1036), Expect = e-131
 Identities = 211/565 (37%), Positives = 304/565 (53%), Gaps = 42/565 (7%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRV--------DG------TVGGYKWMTYGEVSAARKE 125
           TL   F  + + Y D + LGTR  +        DG       +G Y+W+TYG+V      
Sbjct: 59  TLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCN 118

Query: 126 IGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAE 185
             SGL+  G  K  R+ ++   R EWLI    C   +   V +Y +LG +A+ + +N  E
Sbjct: 119 FASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETE 178

Query: 186 IEAIFCIPQTLNTLLSFISEIPSV-HLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGC 244
           +  + C  + L  L+   S++ +V  +I +     +   SL  +S   + S+ +++  G 
Sbjct: 179 VTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGK 238

Query: 245 SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV-QFYPSDIYMSY 303
            +P     P P DIA I YTSG+TG PKG ++THGN+++ VAG   +V +   +D+Y++Y
Sbjct: 239 ENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAY 298

Query: 304 LPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMD-----------DLAVLKPTIFPSVPR 352
           LPLAHI E A + V    G A+G+  G  L L D           D + LKPT+  +VP 
Sbjct: 299 LPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPA 356

Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ-----TPSKM-WDRLVFNKIR 406
           + +R+  G+   V A G L +KLF  AY  ++ A + G         K+ WD LVF KIR
Sbjct: 357 ILDRVRDGVRKKVDAKGGLAKKLFDIAYK-RRLAAIEGSWFGAWGLEKLLWDALVFKKIR 415

Query: 407 ERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS-GHV 465
             LGGR+RFM SG +PLS D   F+ +C G  + +GYG+TET C  +   + D+ S G V
Sbjct: 416 AVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTET-CAGATFSEWDDTSVGRV 474

Query: 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREV--IDGDG- 522
           G P P C +KLV   E  Y   D+P PRGEI + GP V  GY+KN+ +T EV  +D  G 
Sbjct: 475 GPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGM 534

Query: 523 -WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF 581
            W +TGDIG + P G L+IIDRKK+I KL  GEYV+  K+E   +   +V    ++ D F
Sbjct: 535 RWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPF 594

Query: 582 NSCLVAIVAVDPDVLKDWAASQGIK 606
           +S  VA+V      L+ WA   GI 
Sbjct: 595 HSYCVALVVPSQQALEKWAKKAGID 619

Length = 696

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  355 bits (912), Expect = e-113
 Identities = 175/484 (36%), Positives = 250/484 (51%), Gaps = 40/484 (8%)

Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           +++TY E+       G GL   GL KG  + +Y   R EWL   +   + S ++  +Y  
Sbjct: 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYAN 179

Query: 172 LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPS---T 228
           LG DA+ Y +   E +AI C  + +  LL  +      +  ++      +L SLP+   T
Sbjct: 180 LGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTII------YLDSLPASVDT 233

Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPE---DIATICYTSGTTGTPKGAVLTHGNLISNV 285
            G +L+++  + ++G S+        PE   D+A I YTSGTTG PKG + THG+L + +
Sbjct: 234 EGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGI 293

Query: 286 AGFS-----LMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMD--- 337
                    L+      + Y SYLPLAHI E     + +  G  +GF  G    L D   
Sbjct: 294 LALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDTFA 351

Query: 338 ----DLAVLKPTIFPSVPRLYNRIYAGITNAVKAS----GTLREKLFTAAYNSKKQAIVS 389
               DL   +P     VPR    I+  I  AV+A     G+L+ ++F  AY S+ +A+  
Sbjct: 352 RPHGDLTEFRPVFLIGVPR----IFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKE 407

Query: 390 GQ-TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTET 448
           G+ TP   W+  VF+  R  LGGRVR M SG  PLS    +F+ V FG  V++G+G+TET
Sbjct: 408 GKDTP--YWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFGM-VIQGWGLTET 464

Query: 449 SCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYY 508
            C       GD     VG      E+KL+D  E  +T  D P PRGEI +RGP +F+GYY
Sbjct: 465 VCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHT--DTPEPRGEILLRGPFLFKGYY 522

Query: 509 KNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKC 568
           K E  TREV+D DGW HTGD+G     G L+II R K + K   GEY+A E +E +Y + 
Sbjct: 523 KQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQN 582

Query: 569 KFVL 572
           + V+
Sbjct: 583 ELVV 586

Length = 700

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  314 bits (806), Expect = 1e-99
 Identities = 164/497 (32%), Positives = 231/497 (46%), Gaps = 77/497 (15%)

Query: 109 GGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPL 168
           G +   T+ +V+   + I + L   GL+ G RI +   N  EW+I D A     ++SVPL
Sbjct: 2   GQWHEYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPL 61

Query: 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEH---LPSL 225
           Y TL  + ++YV+ H++ +A+F                        VG  D+       +
Sbjct: 62  YPTLTAETIRYVLEHSDAKALF------------------------VGKLDDWDAMKAGV 97

Query: 226 PSTSGVKLISYLQLQ------SQGCSSPQPFCP---PKPEDIATICYTSGTTGTPKGAVL 276
           P      ++                ++ +P      P+PED+ATI YTSGTTG PKG +L
Sbjct: 98  PEGLPTIILFPYSTLKDHYKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVML 157

Query: 277 THGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQG-DNLK 334
           + G       G   ++   P+D  +SYLPLAHI ER   +  S+Y G  V F +  D   
Sbjct: 158 SFGAFAFAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESLD--T 215

Query: 335 LMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS 394
              DL   +PT+F SVPRL+ +   GI    K        L        K  I+S     
Sbjct: 216 FAADLQRARPTVFFSVPRLWTKFQQGILA--KLPPEKLNLLL-------KIPILS----- 261

Query: 395 KMWDRLVFNKIRERLG-GRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIIS 453
                LV  KI + LG  + R  GSGA+P+ P ++ + +   G  + EGYGMTE     S
Sbjct: 262 ----SLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRK-LGLPICEGYGMTEN-FAYS 315

Query: 454 AIDK-GDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEV 512
            ++  GD   G VG P P  E+K+         SED     GEI +R P +  GYYK+  
Sbjct: 316 TLNYPGDRRIGTVGKPIPGVELKI---------SED-----GEILIRSPGLMSGYYKDPE 361

Query: 513 QTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVL 572
           +T E    DGWLHTGD G     G LKI  R K +FK ++G+YVAP  IEN+ +    V 
Sbjct: 362 KTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVE 421

Query: 573 QCFIYGDSFNSCLVAIV 589
           Q  + G       VA+V
Sbjct: 422 QVCVVGSGLPQP-VALV 437

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  308 bits (792), Expect = 7e-99
 Identities = 118/470 (25%), Positives = 186/470 (39%), Gaps = 66/470 (14%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY E+      + + L   G+  G R+ + L N PEW++   A        VPL  +L  
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
           + + Y++  +E + +    + L  LL  + ++  +  +++VG             G  L 
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVG-----------DDGEGLD 109

Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF 294
                   G S+  P  P  P+D+A I YTSGTTG PKG +LTH NL++  AG +     
Sbjct: 110 LLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL 169

Query: 295 YPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLK---LMDDLAVLKPTIFPSVP 351
            P D  +  LPL            +  G  +       L    L+D +   K T+   VP
Sbjct: 170 TPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVP 229

Query: 352 RLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGG 411
            L   +                                                 +    
Sbjct: 230 TLLRLLLKAPEEK------------------------------------------KYDLS 247

Query: 412 RVRFMGSGASPLSPDVMD-FLKVCFGCQVMEGYGMTETS--CIISAIDKGDNLSGHVGSP 468
            +R + SG  PL P+++    +   G  ++ GYG TET+     +     +   G +G P
Sbjct: 248 SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRP 307

Query: 469 NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL--HT 526
            P  E+K++D           P   GE+C+RGP V +GY  +   T E    DGW    T
Sbjct: 308 LPGVEVKVLD----EEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRT 363

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
           GD+G W   G L+I+ RK +  K+  GE + P +IE V  +   V +  +
Sbjct: 364 GDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  286 bits (733), Expect = 1e-88
 Identities = 149/539 (27%), Positives = 232/539 (43%), Gaps = 81/539 (15%)

Query: 71  RFPDHPEIGTLHDNFIYAVENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIG 127
           R        TL      A    PD     +LG   R          +TY E+      + 
Sbjct: 3   RLMRMTAELTLASLLERAARRNPDRPALIFLGRGGR----------LTYRELDRRANRLA 52

Query: 128 SGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIE 187
           + L   G++ G R+ + L N PE+LI   A      ++VPL   L P  + Y++N A  +
Sbjct: 53  AALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAK 112

Query: 188 AIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSP 247
            +    +    L +    +P V ++++VG  D+ LP          I+   L ++G    
Sbjct: 113 VLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLP----------ITLEALAAEGPGPD 162

Query: 248 QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY--PSDIYMSYLP 305
               P  P+D+A + YTSGTTG PKG VLTH NL++N AG +  +     P D+ +S+LP
Sbjct: 163 ADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLP 222

Query: 306 LAHIYE-RANQIVSVYYGVAVGFYQG---DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGI 361
           L HI+      +  +  G  +        D  +++  +   K T+   VP     +   +
Sbjct: 223 LFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLREL---L 279

Query: 362 TNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGAS 421
            N                                        K  + L   +R + SG +
Sbjct: 280 DNP--------------------------------------EKDDDDLSSSLRLVLSGGA 301

Query: 422 PLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISA--IDKGDNLSGHVGSPNPACEIKLVD 478
           PL P++++  +  FG   ++EGYG+TETS +++    D      G VG P P  E+++VD
Sbjct: 302 PLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVD 361

Query: 479 VPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRL 538
                   E  P   GEI VRGP V +GY+     T E  D DGWL TGD+G     G L
Sbjct: 362 PD----GGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYL 417

Query: 539 KIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDPD 594
            I+ R K++     GE + PE+IE V A+   V +  + G   + +   +VA+V + P 
Sbjct: 418 YIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPG 475

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  231 bits (592), Expect = 1e-68
 Identities = 137/511 (26%), Positives = 205/511 (40%), Gaps = 128/511 (25%)

Query: 81  LHDNFIYAVENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQK 137
           L D    A   +PD     + G            + +TY E+        + L   G++K
Sbjct: 1   LADLLERAARRFPDRPALTFFG------------RKLTYAELDELSDRFAAYLQQLGVKK 48

Query: 138 GVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN 197
           G R+ L L N P++ I          + VP+     P  +++ +N +  + +        
Sbjct: 49  GDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVA----- 103

Query: 198 TLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPED 257
                                               IS+    + G +         P+D
Sbjct: 104 ------------------------------------ISFEDALASG-APLPLPVELSPDD 126

Query: 258 IATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF--YPSDIYMSYLPLAHIYERANQ 315
           +A + YT GTTG PKGA+LTH NL++NV   +  V+      D +++ LPL HI+     
Sbjct: 127 LAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTALPLFHIF---GL 183

Query: 316 IVSVYYGVAVGFYQGDNLKLM---DDLAVLK------PTIFPSVPRLYNRIYAGITNAVK 366
            V     + +G   G    L+     + VLK       TIFP VP LYN +         
Sbjct: 184 TV----NMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNAL--------- 230

Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
               L    F       K+   S                       +R   SG +PL  +
Sbjct: 231 ----LNHPEF-------KKYDFS----------------------SLRLCISGGAPLPVE 257

Query: 427 VMD-FLKVCFGCQVMEGYGMTETSCIISA--IDKGDNLSGHVGSPNPACEIKLVDVPEMN 483
           V + F +   G  ++EGYG+TETS + +   +D G+   G +G P P  E+K+VD  E  
Sbjct: 258 VAERFEEK-TGAPLVEGYGLTETSPVTTVNPLD-GERKPGSIGLPLPGTEVKIVD-DE-- 312

Query: 484 YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR 543
             +E  P   GE+ VRGP V +GY+    +T EV+  DGWL TGDIG     G   I+DR
Sbjct: 313 -GNELPPGEVGELVVRGPQVMKGYWNRPEETAEVLT-DGWLRTGDIGYMDEDGYFYIVDR 370

Query: 544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQC 574
           KK++  +  G  V P +IE V      VL+ 
Sbjct: 371 KKDMI-IVGGFNVYPREIEEVLYSHPAVLEA 400

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  233 bits (595), Expect = 4e-68
 Identities = 147/496 (29%), Positives = 220/496 (44%), Gaps = 47/496 (9%)

Query: 109 GGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPL 168
            G+  +TY +   A ++     L  GL++   +G+   N PEW I          I+V +
Sbjct: 4   DGWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGI 63

Query: 169 YDTLGPDAVKYVVNHAEIEAIFCIPQT-LNTLLSFISEIPSVHLIVVVGGK-DEHLPSLP 226
           Y T  P+A +YV   +E   +       L  +L+   ++P +  I+       E  P   
Sbjct: 64  YTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEP--- 120

Query: 227 STSGVKLISYLQLQSQGCSSP-----QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNL 281
                 L S+ +    G S P           KP    T+ YTSGTTG PKG +L+H N+
Sbjct: 121 -----NLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNI 175

Query: 282 ISNVAGFSLMVQFYP--SDIYMSYLPLAHIYERANQIVSVYYGVAVG----FYQGDNLK- 334
                     +       +  +SYLPL+HI   A QI+ ++  ++VG    F Q D LK 
Sbjct: 176 TWTAKAAVKHMDLRTVGQESVVSYLPLSHI---AAQILDIWLPISVGGCVYFAQPDALKG 232

Query: 335 -LMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA------YNSKKQAI 387
            L+  L  ++PT F  VPR++ +I   +      S  L+ K+ + A       N K    
Sbjct: 233 TLVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGG 292

Query: 388 VSGQTPSKMW-DRLVFNKIRERLG-GRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGM 445
            S          +LVF K+R+ LG  R +   +GA+P+S + ++F  +     +ME YGM
Sbjct: 293 ESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFF-LSLNIPIMELYGM 351

Query: 446 TETS-CIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVF 504
           +ETS     +  +   L    G   P CE K+ + P+ +          GEIC+ G  VF
Sbjct: 352 SETSGPHTVSNPQNYRL-LSCGKALPGCETKIHN-PDAD--------GIGEICIWGRHVF 401

Query: 505 QGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN- 563
            GY   E +T E ID DGWLH+GD+G     G L I  R K +   A GE V P  IE  
Sbjct: 402 MGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIEEA 461

Query: 564 VYAKCKFVLQCFIYGD 579
           V  +   +    + GD
Sbjct: 462 VKKELPIISNAMLVGD 477

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  225 bits (576), Expect = 6e-66
 Identities = 129/528 (24%), Positives = 219/528 (41%), Gaps = 94/528 (17%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T+     +    +PD + +           G +  TY E+      + + L   G++KG 
Sbjct: 7   TIGRILRHGARKHPDKEAV--------YFDGRRT-TYAELDERVNRLANALRALGVKKGD 57

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
           R+ ++  N  E+L    A      +  P+   L P+ + Y++N AE   +    + +  L
Sbjct: 58  RVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLL 117

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
            + + ++P+V  ++V G          +    ++  Y +L     S    F      D A
Sbjct: 118 AAILPQLPTVRTVIVEGDGPA------APLAPEVGEYEEL-LAAASDTFDFPDIDENDAA 170

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSV 319
            + YTSGTTG PKG VL+H NL  +       ++    D+Y+  +P+ H++      +++
Sbjct: 171 AMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLAL 230

Query: 320 YYG---VAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLF 376
             G   V    +  +NL   D +   + T F +VP ++  +             L+    
Sbjct: 231 MAGAKQVIPRRFDPENLL--DLIETERVTFFFAVPTIWQML-------------LKAPR- 274

Query: 377 TAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVM-DFLKVCF 435
                              +     F+ +R  +         G + L P ++ +F +  F
Sbjct: 275 ----------------AYFVD----FSSLRLVI--------YGGAALPPALLREFKEK-F 305

Query: 436 GCQVMEGYGMTETSCIISAIDKGDNLSGH------VGSPNPACEIKLVDVPEMNYTSEDQ 489
           G  +++GYGMTETS ++S +   D L G        G P P  E ++VD  + +    + 
Sbjct: 306 GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGD----EL 360

Query: 490 PHPR---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
           P      GEI VRGP + QGY+     T E IDG GWLHTGD+G     G L I DR K+
Sbjct: 361 PPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDG-GWLHTGDVGYIDEDGYLYITDRIKD 419

Query: 547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPD 594
           +     GE + P ++E+       V +            VA++ V PD
Sbjct: 420 VIISG-GENIYPRELEDALYGHPAVAE------------VAVIGV-PD 453

Length = 521

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  202 bits (517), Expect = 1e-59
 Identities = 102/364 (28%), Positives = 156/364 (42%), Gaps = 66/364 (18%)

Query: 257 DIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI 316
           D A I YTSGTTG PKG VL+H NL++N    +  +     D+ +S LPL H+    + +
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60

Query: 317 VS-VYYGVAVGFYQGDN--LKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
           +  +  G  V  Y+G    L  ++ +   + T+   VP LY+ +                
Sbjct: 61  LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL---------------- 104

Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
                A   +   + S                       +R + SG  PLSP++++  + 
Sbjct: 105 ---AKAAEDRGYDLSS-----------------------LRLLISGGEPLSPELLERFEE 138

Query: 434 CFGCQVMEGYGMTETSCIISAI-DKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP 492
             G  ++EGYG+TETS + S   D      G VG P P  E+++VD        E +P P
Sbjct: 139 RPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRVVDE-------EGKPLP 191

Query: 493 ---RGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK 549
               GE+ VRGP V +GY+ N  +T      DGW  TGD+G     G L I  R K++ K
Sbjct: 192 PGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRSKDLIK 251

Query: 550 LAQGEYVAPEKIENVYAKCKFVLQCFIYG--DSFNSCLVAIVAV-------DPDVLKDWA 600
           +  GE V P ++E+V  +   V +  + G  D      +    V         + LK   
Sbjct: 252 VG-GENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALAEELKAHL 310

Query: 601 ASQG 604
             + 
Sbjct: 311 RERL 314

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  192 bits (490), Expect = 8e-54
 Identities = 118/472 (25%), Positives = 191/472 (40%), Gaps = 90/472 (19%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TY E++A  +   + L   G+ KG R+ ++  N P W+I          + VPL     
Sbjct: 31  LTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT 90

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
            D   Y++   + +A+F +   L    S  + +P++  +V+                 K+
Sbjct: 91  ADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICE------TEEDDPHTEKM 144

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
            ++    + G    +      P+D+A I +TSGTTG PKGA+LTH  L+SN A ++  + 
Sbjct: 145 KTFTDFLAAG-DPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203

Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLM-----------DDLAVL 342
               D Y++  P  H++           G   G     N  LM           D   V 
Sbjct: 204 LTEGDRYLAANPFFHVF-----------GYKAGV----NAPLMRGATILPLPVFDPDEVF 248

Query: 343 ------KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM 396
                 + T+ P  P +YN +                                 Q P + 
Sbjct: 249 RLIETERITVLPGPPTMYNSLL--------------------------------QHPDRS 276

Query: 397 WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETS---CII 452
            + L            +R   +GA+ +   +++  +   G   V+ GYG++E S      
Sbjct: 277 AEDL----------SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFN 326

Query: 453 SAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEV 512
              D    ++G +G+     E K+V+        E      GE+ VRGP V +GYY +  
Sbjct: 327 RLDDDRKTVAGTIGTAIAGVENKIVN----ELGEEVPVGEVGELLVRGPNVMKGYYDDPE 382

Query: 513 QTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
            T   ID DGWLHTGD+G     G L I+DRKK++F +  G  V P ++E V
Sbjct: 383 ATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMF-IVGGFNVYPAEVEEV 433

Length = 513

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  191 bits (487), Expect = 2e-53
 Identities = 132/507 (26%), Positives = 202/507 (39%), Gaps = 94/507 (18%)

Query: 72  FPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL 131
            P      +L    +     + D   L     +D   G  + +TY E+    + + +GL 
Sbjct: 1   IPKDL---SLDSASLLFASEFGDRPAL-----IDAATG--RALTYAELERLVRRLAAGLA 50

Query: 132 FHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC 191
             G +KG  + L   N  E+ +V  A  +   +         P  +   V  +  +    
Sbjct: 51  ARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAIT 110

Query: 192 IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFC 251
             +    L S      ++  +V++   D+              +   L       P P  
Sbjct: 111 TSELAEKLASL-----ALEPVVLLDSADDGS-----------AAIDDLLFADEPEP-PVV 153

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV--QFYPSDIYMSYLPLAHI 309
             K +D+A + Y+SGTTG  KG +LTH NLI+NVA         F   D+ +  LP+ HI
Sbjct: 154 VIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHI 213

Query: 310 YERANQIVSVYYG--------VAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGI 361
           Y     +  +           V +  +  D  K +  +   K T  P VP     I   +
Sbjct: 214 Y----GLTVILLALLRLGATVVVMPRF--DLEKFLAAIEKYKVTHLPVVPP----IVLAL 263

Query: 362 TNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGAS 421
                                 K  IV                 +  L   ++ +GSGA+
Sbjct: 264 V---------------------KHPIVD----------------KYDLS-SLKQIGSGAA 285

Query: 422 PLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAID--KGDNLSGHVGSPNPACEIKLVD 478
           PL  ++ +  +  F G ++ +GYGMTE+S + +     + D   G VG   P  E K+VD
Sbjct: 286 PLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVD 345

Query: 479 VPEMNYTSEDQPH-PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGR 537
            PE   T E  P    GE+ VRGP V +GY  N   T E ID DGWLHTGD+G +   G 
Sbjct: 346 -PE---TGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGY 401

Query: 538 LKIIDRKKNIFKLAQGEYVAPEKIENV 564
           L I+DR K + K  +G  VAP ++E +
Sbjct: 402 LFIVDRLKELIKY-KGFQVAPAELEAL 427

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  184 bits (470), Expect = 1e-52
 Identities = 96/319 (30%), Positives = 141/319 (44%), Gaps = 59/319 (18%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY-ERA 313
           P+D A I YTSGTTG PKGA+LTH N+++N    +  +     D  +  +PL H++    
Sbjct: 1   PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60

Query: 314 NQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASG 369
             + S+  G  +     F  G  L+L++     + T    VP ++  +            
Sbjct: 61  GVLASLTAGATLVLMEKFDPGAALRLIERE---RITALHGVPTMFIAL------------ 105

Query: 370 TLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD 429
            L    F                 S                  +R   SG +P+ P+++ 
Sbjct: 106 -LEHPDFDKF-----------DLSS------------------LRTGISGGAPVPPELVR 135

Query: 430 FLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGH---VGSPNPACEIKLVDVPEMNYT 485
            ++  F   ++  GYGMTETS + +     D        VG P P  E+K+VD P+    
Sbjct: 136 RIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVD-PD---G 191

Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
            E  P   GEICVRG  V +GYY +   T E ID DGWLHTGD+G     G L+I+ R K
Sbjct: 192 GEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDEDGYLRIVGRIK 251

Query: 546 NIFKLAQGEYVAPEKIENV 564
           ++     GE + P +IE  
Sbjct: 252 DMIIRG-GENIYPAEIEEA 269

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  174 bits (443), Expect = 5e-48
 Identities = 104/357 (29%), Positives = 152/357 (42%), Gaps = 55/357 (15%)

Query: 257 DIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI 316
           D A I YTSGTTG PKG VLTHGNL +N        ++  SD+ +  LPL H++   N +
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNAL 148

Query: 317 -VSVYYGVAVGFYQGDNLKLMDDLAVLKP-TIFPSVPRLYNRIYAGITNAVKASGTLREK 374
              ++ G +V F    + +  D L +L   T+F  VP +Y R+               E 
Sbjct: 149 HCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEH-----------YEF 197

Query: 375 LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC 434
              AA                +                 R   SG++ L   V++  +  
Sbjct: 198 DDAAA-----------AAARNL-----------------RLFVSGSAALPVPVLERWEER 229

Query: 435 FGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRG 494
            G  ++E YGMTET   +S    G+   G VG P P  E+++VD       +  +    G
Sbjct: 230 TGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEV---G 286

Query: 495 EICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK-NIFKLAQG 553
           EI VRGP VF  Y+     T E    DGW  TGD+G+    G  +I+ RK  +I K   G
Sbjct: 287 EIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSG-G 345

Query: 554 EYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIV------AVDPDVLKDWAA 601
             V+  +IE    +   V +  + G     +   +VA+V      A+    L+ WA 
Sbjct: 346 YKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAELRAWAR 402

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  171 bits (436), Expect = 2e-46
 Identities = 117/442 (26%), Positives = 183/442 (41%), Gaps = 68/442 (15%)

Query: 136 QKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT 195
           ++G  IG+ L +     + + A      + V L  T G + ++     A I+ +      
Sbjct: 29  KEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQAGIKTVI----- 83

Query: 196 LNTLLSFISEIPSVHLIVVVGGKD----EHLPSLPSTSGV-KLISYLQLQSQGCSSPQPF 250
             T  +F+ ++    L+V++ G      E L      S   KL ++L  +          
Sbjct: 84  --TSRAFLEKLKLEGLVVLLEGVRIVYLEDL--RAKISKADKLKAFLAAKLPPALLRLFL 139

Query: 251 CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY 310
              KP+D A I +TSG+ G PKG VL+H NL++N+   + ++     D+ +  LPL H +
Sbjct: 140 AGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAF 199

Query: 311 ERANQIVSVYYGVAVGFYQGDNLKLMDDLAVL---KPTIFPSVPRLYNRIYAGITNAVKA 367
                      G+ V       L L+  L V+    P     +  L   I        KA
Sbjct: 200 -----------GLTVTLL----LPLLTGLRVVYYPNPLDAKKIAEL---IRD-----YKA 236

Query: 368 SGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDV 427
           +       F   Y             ++      F+ +R         + +GA  L    
Sbjct: 237 TILCGTPTFLRGY-------------ARNAHPEDFSSLR--------LVVAGAEKLPEAT 275

Query: 428 MDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSE 487
            +  +  FG +++EGYG TE S +IS      N  G VG P P  E+++V       T E
Sbjct: 276 RELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIEVRIVSPE----THE 331

Query: 488 DQPHPR-GEICVRGPIVFQGYYKNEVQTREV-IDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
           + P    G + VRGP V  GY  NE +T EV + GDGW  TGDIG     G L I+ R K
Sbjct: 332 ELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLK 391

Query: 546 NIFKLAQGEYVAPEKIENVYAK 567
              K+  GE V+   +E + ++
Sbjct: 392 RFAKIG-GEMVSLTAVEELLSE 412

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  174 bits (444), Expect = 3e-46
 Identities = 104/348 (29%), Positives = 175/348 (50%), Gaps = 10/348 (2%)

Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS--LMVQFYPSDIYMSYLPLAHIYE 311
            P+ I +I YTSGT+G PKG +L++ NL + V       + + Y    ++SYLP++HIYE
Sbjct: 302 DPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYE 361

Query: 312 RANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTL 371
           R    +S   G  +  +  D      D+   K  I   VP+++NRIY  I   +     L
Sbjct: 362 RVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPL 421

Query: 372 REKLFTAAYNSKKQAIVSGQTPSKMWDRL--VFNKIRERLGGRVRFMGSGASPLSPDVMD 429
           +  L     + +K    +    SK  + +  + +KI++++   +  + +G   LSP + +
Sbjct: 422 KRFLVKKILSLRKS--NNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAE 479

Query: 430 FLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSP-NPACEIKLVDVPEMNYTSED 488
            L V       +GYG+TET+  I      DN +  +G P +P  + K+       Y + D
Sbjct: 480 ELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWE--TYKATD 537

Query: 489 QPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIF 548
              P+GE+ ++   +F GY+  + QT+     DG+  TGDI      G L  +DR K + 
Sbjct: 538 TL-PKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLV 596

Query: 549 KLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVL 596
           KL+QGEY+  + + N+Y++  F+  C +YGD      +AI++VD  +L
Sbjct: 597 KLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLL 644

Length = 746

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  160 bits (408), Expect = 4e-43
 Identities = 110/495 (22%), Positives = 174/495 (35%), Gaps = 136/495 (27%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TYGE+  A   + + L   G++ G  +   L N  E+++V  AC+    +  P+     
Sbjct: 2   LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
              + +++  A    +F +P                       G D              
Sbjct: 62  ERELGFILRQARARVLF-VPD-------------------EFRGFD-------------- 87

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
             Y  +               P+D+A + YTSGTTG PKG + TH  L++ V  +   + 
Sbjct: 88  --YAAM---------------PDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLG 130

Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDD------LAVL---KP 344
             P D+ +   PLAHI           YG+ +    G  + L D       L ++     
Sbjct: 131 LTPDDVVLMPSPLAHI-------TGFLYGLELPLLLGATVVLQDRWDPARALELIREHGV 183

Query: 345 TIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNK 404
           T             A +  A  A+G     L                             
Sbjct: 184 TFTMGATPFL----ADLLAAADAAGPDLPSL----------------------------- 210

Query: 405 IRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK--GDNLS 462
                    R    G +P+  ++        G +V+  YGMTE   +         D  +
Sbjct: 211 ---------RVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDDPDDKRA 261

Query: 463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVID 519
              G P P  E+++VD        +    P    GE+ VRGP +F GY        E   
Sbjct: 262 ATDGRPVPGVEVRIVD-------DDGNDVPPGEEGELQVRGPQLFLGYLDPP-DNTEAFT 313

Query: 520 GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD 579
            DGW  TGD+G     G L+I  RKK+I  +  GE ++  +IE++  +   V +      
Sbjct: 314 DDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRHPAVAE------ 366

Query: 580 SFNSCLVAIVAVDPD 594
                 VA+VA+ PD
Sbjct: 367 ------VAVVAM-PD 374

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  154 bits (391), Expect = 1e-41
 Identities = 102/345 (29%), Positives = 150/345 (43%), Gaps = 77/345 (22%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
           P+D A I +TSGTTG PKG  LTH NL+++    +   +  PSD  ++ +PL HI+    
Sbjct: 1   PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIH---G 57

Query: 315 QIVSVYY-----GVAV---GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
            IVS+       G  V    F      K  DD+A  + T + +VP ++            
Sbjct: 58  LIVSLLATLLAGGSVVCPPKF---SASKFWDDIAKYRVTWYSAVPTIH------------ 102

Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
                             Q ++    P+         K   RL    RF+ S ++PL P 
Sbjct: 103 ------------------QILLKTAKPNPG-------KPPPRL----RFIRSASAPLPPA 133

Query: 427 VMDFLKVCFGCQVMEGYGMTETSCIISA--IDKGDNLSGHVGSPNPACEIKLVDVPEMNY 484
           V+D L+  FG  V+E YGMTE +  I++  +       G VG P    E+ ++D      
Sbjct: 134 VLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPAG-VEVAILD------ 186

Query: 485 TSEDQPHP---RGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII 541
             + +P P    GEI +RGP V  GY  N    RE    DGW  TGD+G     G L + 
Sbjct: 187 -DDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANRE-AFRDGWFRTGDLGYLDEDGYLFLT 244

Query: 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQ--CF-----IYGD 579
            R K +     GE ++P ++E V  +   V +   F     +YG+
Sbjct: 245 GRIKELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGE 288

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  156 bits (396), Expect = 7e-41
 Identities = 128/514 (24%), Positives = 201/514 (39%), Gaps = 95/514 (18%)

Query: 87  YAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLI 146
           +A   + D       +      G     TY +     + + + L   G++ G R+     
Sbjct: 4   HAARYFGD-----REIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAW 58

Query: 147 NRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI-SE 205
           N    L +  A      +   L   L P+ + Y++NHAE + IF +      LL  I   
Sbjct: 59  NTHRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIF-VDDDFLPLLEAIAPR 117

Query: 206 IPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPED-IATICYT 264
           +P+V  +VV    D    SLP      + +Y +L  +   SP+   P   E+  A +CYT
Sbjct: 118 LPTVKAVVVYDDADMPETSLP-----NVYAYEELLEEE--SPEYEWPELDENTAAGLCYT 170

Query: 265 SGTTGTPKGAVLTHGNL------ISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS 318
           SGTTG PKG V +H +L       +      L      SD  +  +P+ H     N    
Sbjct: 171 SGTTGNPKGVVYSHRSLVLHTLASALPDSLGLS----ESDTVLPVVPMFH----VNAWGL 222

Query: 319 VYYGVAVG---FYQGDNLKLMDDLAVL----KPTIFPSVPRLYNRIYAGITNAVKASGTL 371
            Y    VG      G  L     L  L    K T+   VP     I+ G+ N ++A+G  
Sbjct: 223 PYAATMVGAKLVLPGRYLDP-ASLLDLIEEEKVTVSAGVPT----IWLGLLNYLEANG-- 275

Query: 372 REKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL 431
                                     D     +           +  G S L   +++ L
Sbjct: 276 -------------------------KDLSSLRR-----------VVVGGSALPRSLIEKL 299

Query: 432 KVCFGCQVMEGYGMTETSCIISA-----------IDKGDNLSGHVGSPNPACEIKLVDVP 480
           +   G +V+  +GMTETS + +             ++   L    G P P  E+++VD  
Sbjct: 300 EE-RGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVD-D 357

Query: 481 EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
           E N    D     GE+ VRGP V   YYK+  +T E+   DGW  TGD+ +    G ++I
Sbjct: 358 EGNELPWDGKTV-GELVVRGPWVTGSYYKDPEKTEEL-TRDGWFRTGDVAVIDEDGYIQI 415

Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQC 574
            DR K++ K + GE+++  ++EN       V + 
Sbjct: 416 TDRAKDVIK-SGGEWISSVELENALMAHPAVAEA 448

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  154 bits (391), Expect = 7e-41
 Identities = 92/465 (19%), Positives = 162/465 (34%), Gaps = 91/465 (19%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           T+ ++      +   L   G++ G R+ L   N  E +++ HAC         L   L  
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
           +     +   +++ +      L     F ++  S+  I                    L 
Sbjct: 61  NERTNQLEDLDVQLLLT-DSLL-EEKDFQAD--SLDRI-----------EAAGRYETSLS 105

Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF 294
           +   +                + IAT+ +TSGTTG PK    T  N  ++  G    + F
Sbjct: 106 ASFNM----------------DQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGF 149

Query: 295 YPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLY 354
              D ++  LPL HI   +     +  G  +      N +L++ +A  + T    VP   
Sbjct: 150 TEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN-QLLEMIANERVTHISLVPTQL 208

Query: 355 NRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR 414
           NR+        +       +                                  LGG   
Sbjct: 209 NRL------LDEGGHNENLRKI-------------------------------LLGG--- 228

Query: 415 FMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTET-SCIISAIDKGDNLSGHVGSPNPACE 473
                 S +   +++     +G  +   YGMTET S + +A  +  +    VG P    E
Sbjct: 229 ------SAIPAPLIE-EAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGRE 281

Query: 474 IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWL 533
           IK+           D     GEI V+G  + +GY     +     +  GW +TGDIG   
Sbjct: 282 IKI---------KVDNKEGHGEIMVKGANLMKGYLYQG-ELTPAFEQQGWFNTGDIGELD 331

Query: 534 PGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
             G L ++ R+ ++  ++ GE + PE+IE V  +   + +  +  
Sbjct: 332 GEGFLYVLGRRDDLI-ISGGENIYPEEIETVLYQHPGIQEAVVVP 375

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  151 bits (384), Expect = 2e-39
 Identities = 62/153 (40%), Positives = 86/153 (56%), Gaps = 5/153 (3%)

Query: 413 VRFMGSGASPLSPDVMDFLKVCFG-CQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPA 471
           +R + SGA+PLS ++ + L+  F    + +GYGMTET    +    GD   G VG   P 
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPN 324

Query: 472 CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGL 531
            E K+VD         ++   RGE+CV+GP + +GY  N   T+E ID DGWLHTGDIG 
Sbjct: 325 VEAKIVDEDGGKSLGPNE---RGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGY 381

Query: 532 WLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           +   G   I+DRKK + K  +G  V P ++E V
Sbjct: 382 FDEDGNFYIVDRKKELIKY-KGYQVPPAELEAV 413

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  152 bits (387), Expect = 2e-39
 Identities = 109/371 (29%), Positives = 162/371 (43%), Gaps = 78/371 (21%)

Query: 253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSD-IYMSYLPLAHIY 310
           P P+D+A I YTSGTTG PKGA LTH NL +N A G + +          ++ LP+ H Y
Sbjct: 216 PTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAY 275

Query: 311 ERANQIVSVYYGVAVGFYQGDNLKLMDD------LAVLK---PTIFPSVPRLYNRIYAGI 361
                   +   + +    G  L L+        L  +K   PT  P VP LY +I    
Sbjct: 276 -------GLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEA- 327

Query: 362 TNAVKASGTLREKLFTAAYNSKKQAI-VSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGA 420
                               ++++ + +SG                      VR   SGA
Sbjct: 328 --------------------AEERGVDLSG----------------------VRNAFSGA 345

Query: 421 SPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNL-SGHVGSPNPACEIKLVDV 479
             L    ++  +   G  ++EGYG+TETS II      D+   G+VG P P  E+++VD 
Sbjct: 346 MALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD- 404

Query: 480 PEMNYTSEDQPH-PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRL 538
           PE     E  P    GE+ VRGP VF+GY+    +T +    DGW  TGD+ +    G +
Sbjct: 405 PED--PDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFL-DGWFRTGDVVVMEEDGFI 461

Query: 539 KIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG----DSFNSCLVAIV----- 589
           +I+DR K +  +  G  V P ++E V  +   V    + G    D     + A+V     
Sbjct: 462 RIVDRIKELI-ITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGA 520

Query: 590 AVDPDVLKDWA 600
           A+DP+ L+ + 
Sbjct: 521 ALDPEGLRAYC 531

Length = 573

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  146 bits (372), Expect = 2e-38
 Identities = 103/366 (28%), Positives = 150/366 (40%), Gaps = 75/366 (20%)

Query: 257 DIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI 316
           D A I YTSGTTG PKG +LTH  L+      + ++   P D+ ++ LPL HI     Q 
Sbjct: 82  DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHI---NAQA 138

Query: 317 VSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIY---AGITNAVKASGTLRE 373
            SVY  + VG        L     VL P    S  R ++++    A + N + A      
Sbjct: 139 YSVYAALLVG------ATL-----VLLPRFSAS--RFWDQVRKHGATVFNLLGAMA---- 181

Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
                       AI+  Q PS   DR             +RF+     PL   +    + 
Sbjct: 182 ------------AILMKQPPS-PDDR----------DHPLRFVFGA--PLPAAIWPAFEE 216

Query: 434 CFGCQVMEGYGMTETS-CIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP 492
            FG +++EGYGMTET   II+  D      G  G P P  E+++VD        + +  P
Sbjct: 217 RFGVKLVEGYGMTETGVPIIAPGDPA--PPGSCGRPRPGVEVRIVD-------EDGREVP 267

Query: 493 ---RGEICVR---GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
               GE+ VR      +F+GYY     T +     GW HTGD G     G L  +DRKK+
Sbjct: 268 PGEVGELVVRPRRPWAMFKGYYGMPEATAKAWRN-GWFHTGDRGRRDEDGFLYFVDRKKD 326

Query: 547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG--DSFNSCLVAIVAV-------DPDVLK 597
             +  +GE ++  ++E        V +  +           V  V V       DP+ L 
Sbjct: 327 AIR-RRGENISSYEVEAAILAHPAVAEAAVVAVPSELGEDEVKAVVVLRPGETLDPEALL 385

Query: 598 DWAASQ 603
           ++   +
Sbjct: 386 EFCRDR 391

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  149 bits (377), Expect = 3e-38
 Identities = 138/504 (27%), Positives = 218/504 (43%), Gaps = 105/504 (20%)

Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISV---PL 168
           K +TYGE+    + + + L   GL KG R+ + + N  ++ +   A     Y+ V   PL
Sbjct: 47  KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPL 106

Query: 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIV--------------- 213
           Y    P  +++ +  +  EAI  +     T+   +++    H++V               
Sbjct: 107 YT---PRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVN 163

Query: 214 -VVGGKDEHLP--SLPSTSGVKLISYLQLQSQGCSSPQPFCPPK--PEDIATICYTSGTT 268
            VV    + +P  SLP       + +    ++G    Q F P K  P+D+A + YT GTT
Sbjct: 164 FVVRRVKKMVPAWSLPGH-----VRFNDALAEGAR--QTFKPVKLGPDDVAFLQYTGGTT 216

Query: 269 GTPKGAVLTHGNLISNVAGFSLMVQ----FYPSD---IYMSYLPLAHIYERANQIVSVYY 321
           G  KGA L H N+++NV      +Q      P      ++  LPL HI+      V    
Sbjct: 217 GVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALT---VCGLL 273

Query: 322 GVAVGFYQGDNL---------KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLR 372
           G+  G   G N+           + +L   +  IFP+V  LYN                 
Sbjct: 274 GMRTG---GRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYN----------------- 313

Query: 373 EKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK 432
                A  N+              +D+L F+K+    GG       G +   P    +L+
Sbjct: 314 -----ALLNNPD------------FDKLDFSKLIVANGG-------GMAVQRPVAERWLE 349

Query: 433 VCFGCQVMEGYGMTETSCIISA--IDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQP 490
           +  GC + EGYG++ETS + +   +D     SG +G P P+ E+ + D  + N     +P
Sbjct: 350 MT-GCPITEGYGLSETSPVATCNPVD-ATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEP 406

Query: 491 HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 550
              GEIC+RGP V  GY+    +T +V+  DG+  TGD+G+    G  KI+DRKK++  L
Sbjct: 407 ---GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMI-L 462

Query: 551 AQGEYVAPEKIENVYAKCKFVLQC 574
             G  V P +IE V A    VL+ 
Sbjct: 463 VSGFNVYPNEIEEVVASHPGVLEV 486

Length = 557

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  144 bits (366), Expect = 1e-37
 Identities = 90/350 (25%), Positives = 139/350 (39%), Gaps = 60/350 (17%)

Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ 315
           +D+A I YTSGTTG PKG + TH  +++  A  +      P  + +++LPL H+      
Sbjct: 84  DDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHVAG---- 139

Query: 316 IVSVYYGVAVGFYQGDNLKLM---DDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLR 372
              +   +    Y G  L L+   D  A  +     ++ R     Y              
Sbjct: 140 ---MQGSMNAPIYTGATLVLLTRWDREAAAR-----AIER-----YRV------------ 174

Query: 373 EKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK 432
               T   N     +     P             +     ++ +G G + L P V + LK
Sbjct: 175 ----THWTNIVTMVVDLLAHPR----------FADYDLSSLKVVGGGGAALPPAVAERLK 220

Query: 433 VCFGCQVMEGYGMTETSCIISAIDKGDNL-SGHVGSPNPACEIKLVDVPEMNYTSEDQPH 491
              G    EGYG+TET    +  +  D      +G P    + +++D PE   T E+ P 
Sbjct: 221 ALTGLLYEEGYGLTET-HTCTHFNPPDRPKPQCLGIPVFGTDARVID-PE---TGEELPP 275

Query: 492 PR-GEICVRGPIVFQGYYKNEVQTREV---IDGDGWLHTGDIGLWLPGGRLKIIDRKKNI 547
              GEI VRGP VF+GY+     T E    +DG  +  TGD+G     G    +DR K +
Sbjct: 276 GEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRM 335

Query: 548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDPD 594
                G  V P ++E +  +   VL+  + G         + A V + PD
Sbjct: 336 IN-VSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPD 384

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  145 bits (367), Expect = 7e-37
 Identities = 125/517 (24%), Positives = 189/517 (36%), Gaps = 100/517 (19%)

Query: 69  VDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGS 128
           V RFPD   +   H                  R             T+ +++ A   +  
Sbjct: 28  VARFPDREALVVRH---------------QALR------------YTWRQLADAVDRLAR 60

Query: 129 GLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEA 188
           GLL  G+Q G R+G++  N  EWL+   A +    I V +        ++Y +  + +  
Sbjct: 61  GLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRW 120

Query: 189 IFCIP-----QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSL--------PSTSGVKLIS 235
           + C            L   +   P +          E LP L            G     
Sbjct: 121 VICADAFKTSDYHAMLQELL---PGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWH 177

Query: 236 YLQLQSQGCSSPQPFCPP---KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
            LQ + +  S             +D   I YTSGTTG PKGA L+H N+++N    +  +
Sbjct: 178 ELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL 237

Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVG---FYQGDNLKLMDDLAVLKPTIFPS 349
                D     +PL H +     +++    + VG    Y  +     D LA L+      
Sbjct: 238 GLTEHDRLCVPVPLYHCF---GMVLANLGCMTVGACLVYPNEAF---DPLATLQ------ 285

Query: 350 VPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERL 409
                                + E+  TA Y      I     P     R  F+    R 
Sbjct: 286 --------------------AVEEERCTALYGVPTMFIAELDHP----QRGNFDLSSLRT 321

Query: 410 GGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGH---V 465
           G     M    +P   +VM  +       +V   YGMTETS +       D+L      V
Sbjct: 322 G----IMA--GAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETV 375

Query: 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLH 525
           G   P  E+K+VD P+       +    GE+C RG  V +GY+ N   T E ID DGW+H
Sbjct: 376 GRTQPHLEVKVVD-PDGATVPRGE---IGELCTRGYSVMKGYWNNPEATAESIDEDGWMH 431

Query: 526 TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
           TGD+      G ++I+ R K++  +  GE + P +IE
Sbjct: 432 TGDLATMDEQGYVRIVGRSKDMI-IRGGENIYPREIE 467

Length = 558

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  141 bits (356), Expect = 2e-35
 Identities = 123/493 (24%), Positives = 199/493 (40%), Gaps = 74/493 (15%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
            T+ E+      +   L   G+  G R+ + ++NR E++    A +    I+VP+   L 
Sbjct: 43  TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEI-PSVHLIVVVGGKDEHLPSLPSTSGVK 232
           P  + ++V+      +      L  + + + +I P +  +VV GG         S   V 
Sbjct: 103 PPEIAFLVSDCGAHVVVTEA-ALAPVATAVRDIVPLLSTVVVAGG--------SSDDSV- 152

Query: 233 LISYLQLQSQGCSSPQPFCPPKPEDI-ATICYTSGTTGTPKGAVLTHGNLISN-VAGFSL 290
            + Y  L ++   +  P     P D  A I YTSGTTG PKGAVLTH NL    +     
Sbjct: 153 -LGYEDLLAEAGPAHAPV--DIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRT 209

Query: 291 MVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFY---QGDNLKLMDDLAVLKPTIF 347
                 SD+    +PL HI    + +  +  G     Y     D  +L+D L   K T  
Sbjct: 210 NGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGI 269

Query: 348 PSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRE 407
             VP                              ++ QA+ + Q              R 
Sbjct: 270 FLVP------------------------------AQWQAVCAEQQA------------RP 287

Query: 408 RLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGDNLS--GH 464
           R    +R +  GA+P S  ++  +   F   Q++  +G TE S +   +   D +   G 
Sbjct: 288 R-DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGS 346

Query: 465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL 524
           VG   P    ++VD   MN   +      GEI  R P +  GY+ N   T E   G GW 
Sbjct: 347 VGKVIPTVAARVVD-ENMN---DVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAG-GWF 401

Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSF 581
           H+GD+      G + ++DRKK++  ++ GE +   ++ENV A    +++  + G   + +
Sbjct: 402 HSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEVENVLASHPDIVEVAVIGRADEKW 460

Query: 582 NSCLVAIVAVDPD 594
               VA+ AV  D
Sbjct: 461 GEVPVAVAAVRND 473

Length = 542

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  138 bits (350), Expect = 1e-34
 Identities = 100/486 (20%), Positives = 164/486 (33%), Gaps = 106/486 (21%)

Query: 105 DGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYI 164
           DG  G ++ +TYG++      + + L   G  KG R+ +Y+ N PE +I   A +    I
Sbjct: 32  DGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAI 91

Query: 165 SVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPS---VHLIVVVGGKDEH 221
              +   L  +AV   +     + +     T            +   +  +VVV      
Sbjct: 92  PAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLW 151

Query: 222 LPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNL 281
                  +  K                 F P   +D   + YTSGTTG PKG V +HG  
Sbjct: 152 YDEAVEKASEKF---------------EFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGY 196

Query: 282 ISNVAGFSLM--------VQFYPSDI-------YMSYLPLAH-----IYERANQIVSVYY 321
           +      +            +  SD        Y  + PLA      +Y+          
Sbjct: 197 LVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGR-------- 248

Query: 322 GVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYN 381
                FY  +   L + L   K TIF + P    R+           G       +    
Sbjct: 249 ----PFYSPER--LWEALEKYKVTIFGTSPTFLRRL--------MKLGLGEPYDLS---- 290

Query: 382 SKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVME 441
                                          +R +GS   PL+P+  ++     G  +++
Sbjct: 291 ------------------------------SLRVLGSAGEPLNPEAFEWFYSALGVWILD 320

Query: 442 GYGMTET-SCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG 500
            YG TET    I+        +G  G P P   ++ VD  E N      P   GE+ VR 
Sbjct: 321 IYGQTETGMGFIAGRP--PVKNGSSGLPLPGYAVRRVD-DEGN----PVPPGVGELVVRL 373

Query: 501 --PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAP 558
             P +   Y+ +  + +E   G  +   GD       G   +  R  ++ K++ G+ + P
Sbjct: 374 PWPGMALTYWNDPERYKEAYFGRWYRT-GDWAERDEDGYFWLHGRSDDVIKVS-GKRIGP 431

Query: 559 EKIENV 564
            +IE+V
Sbjct: 432 LEIESV 437

Length = 528

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  135 bits (341), Expect = 7e-34
 Identities = 116/463 (25%), Positives = 183/463 (39%), Gaps = 87/463 (18%)

Query: 110 GYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLY 169
             K +T+ E+  A   +   L   G++KG R+ L + N  E ++V HA      ++V L 
Sbjct: 24  EEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLN 83

Query: 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
             L  + + + ++ AE++ +            F +++                       
Sbjct: 84  TRLSREELLWQLDDAEVKCLITDD-------DFEAKL----------------------I 114

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS 289
               + + +L +      +       +++ATI YTSGTTG PKG + T+GN   +  G +
Sbjct: 115 PGISVKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSA 174

Query: 290 LMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQG-DNLKLMDDLAVLKPTIFP 348
           L +     D +++ +P+ HI   +  + SV YG+ V   +  D  K+   L     TI  
Sbjct: 175 LNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIIS 234

Query: 349 SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER 408
            V  +  R              L E+L    Y S                          
Sbjct: 235 VVSTMLQR--------------LLERLGEGTYPSS------------------------- 255

Query: 409 LGGRVRFMGSGASPLSPDVMDFLKVC--FGCQVMEGYGMTETSCIISAIDKGDNLS--GH 464
                R M  G  P    +   L+ C   G  V + YGMTET+  I  +   D L+  G 
Sbjct: 256 ----FRCMLLGGGPAPKPL---LEQCKEKGIPVYQSYGMTETASQIVTLSPEDALTKLGS 308

Query: 465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL 524
            G P   CE+K+             P   GEI V+GP V +GY   E  TRE    DGW 
Sbjct: 309 AGKPLFPCELKIEK-----DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQ-DGWF 362

Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAK 567
            TGDIG     G L ++DR+ ++  ++ GE + P +IE V   
Sbjct: 363 KTGDIGYLDEEGFLYVLDRRSDLI-ISGGENIYPAEIEEVLLS 404

Length = 483

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  134 bits (340), Expect = 2e-33
 Identities = 137/567 (24%), Positives = 207/567 (36%), Gaps = 140/567 (24%)

Query: 60  RSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEV 119
               +PL+ ++R                A + YPD     T V V G     ++ TY E 
Sbjct: 1   YVPLTPLSFLER----------------AAKVYPDR----TAV-VYGDR---RY-TYRET 35

Query: 120 SAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY 179
               + + S L   G+ KG  + +   N P  L           + VPL   L  D + +
Sbjct: 36  YDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAF 95

Query: 180 VVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL 239
           ++NH+E + +F   + L+     ++ + +  +I             P+    +   Y  L
Sbjct: 96  ILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEII-----VISPAAEDSEEGDYEDL 150

Query: 240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDI 299
            + G   P P  P    D  ++ YTSGTTG PKG V TH     N  G  +        +
Sbjct: 151 LAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDRPV 210

Query: 300 YMSYLPLAHIYERANQIVSVYYGVAVGFYQGDN-----------LKLMDDLAVLKPTIFP 348
           Y+  LP+ H     N     +   AVG   G +             L++   V   T   
Sbjct: 211 YLWTLPMFH----CNGWCFPWAITAVG---GTHVCLRKVDAPAIYDLIEKHKV---THLC 260

Query: 349 SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER 408
             P + N     + NA +A                 + + +G  P       V  K+ E 
Sbjct: 261 GAPTVLN----MLANAPEADK--------LPLPRPVRVMTAGAPPPPA----VIKKM-EE 303

Query: 409 LGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISA---IDKGDNLS--- 462
           LG  V                         V   YG+TET   I+      + D L    
Sbjct: 304 LGFEV-----------------------THV---YGLTETYGPITVCEWKPEWDALPAEE 337

Query: 463 ----------GHVGSPNPACEIKLVDVPEMNYTSEDQPHPR-----GEICVRGPIVFQGY 507
                      +VG      E+ +VD PE       +  PR     GEI +RG  V +GY
Sbjct: 338 RARLKARQGVRYVG----LEEVDVVD-PETM-----KDVPRDGKTIGEIVMRGNTVMKGY 387

Query: 508 YKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAK 567
           YKN   T E   G GW H+GD+ +  P G ++I DR K+I  ++ GE ++  ++E V  K
Sbjct: 388 YKNPEATEEAFAG-GWFHSGDLAVVHPDGYIEIKDRSKDII-ISGGENISSIEVEGVLYK 445

Query: 568 CKFVLQCFIYGDSFNSCLVAIVAVDPD 594
              VL+             A+VA  PD
Sbjct: 446 HPAVLEA------------AVVAR-PD 459

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  131 bits (332), Expect = 2e-32
 Identities = 123/520 (23%), Positives = 204/520 (39%), Gaps = 108/520 (20%)

Query: 80  TLHDNFIYAVENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH--G 134
           +L  N   +   YPD     + G  +            +Y E+     E  +G L    G
Sbjct: 11  SLFHNLEVSARRYPDKTAIVFYGRAI------------SYREL-LEEAERLAGYLQQECG 57

Query: 135 LQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ 194
           ++KG R+ LY+ N P+++I  +A    + + VP+      + + + V  +         +
Sbjct: 58  VRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSE 117

Query: 195 TLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQ--SQGCSSP----- 247
               +   +  +   H+IV      ++   LP+   + + ++L+ +   Q  +       
Sbjct: 118 LAPKVAPAVGNLRLRHVIVA-----QYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAW 172

Query: 248 -----QPFCPPK----PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSD 298
                    PP     P+D+A + YTSGTTG PKG + TH  +++N  G  L     P  
Sbjct: 173 KEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPES 232

Query: 299 IYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIY 358
           + ++ LPL H       +  + + +    Y G  + LM              PR ++R  
Sbjct: 233 VVLAVLPLFH-------VTGMVHSMNAPIYAGATVVLM--------------PR-WDREA 270

Query: 359 AGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGS 418
           A              +L       + +       P+ + D L    + ER    +R++G 
Sbjct: 271 AA-------------RLI-----ERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGG 312

Query: 419 GASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKL-- 476
           G + +   V + LK   G   +EGYG+TET   ++          H    NP    KL  
Sbjct: 313 GGAAMPEAVAERLKELTGLDYVEGYGLTET---MAQT--------HS---NPPDRPKLQC 358

Query: 477 VDVPEMNY--------TSEDQPHPR-GEICVRGPIVFQGYYKNEVQTREV---IDGDGWL 524
           + +P            T E+ P    GEI V GP VF+GY+     T E    IDG  + 
Sbjct: 359 LGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFF 418

Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
            TGD+G     G   I DR K +   A G  V P ++EN+
Sbjct: 419 RTGDLGRMDEEGYFFITDRLKRMIN-ASGFKVWPAEVENL 457

Length = 546

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  131 bits (332), Expect = 2e-32
 Identities = 134/511 (26%), Positives = 212/511 (41%), Gaps = 113/511 (22%)

Query: 81  LHDNFIYAVENYPDYKYLGTRV-RVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           LHD   Y  E   ++     R   +DG  G  +  TY +V    + + +GL   G+++G 
Sbjct: 25  LHD---YCFERLSEFS---DRPCLIDGATG--RVYTYADVELLSRRVAAGLHKLGIRQGD 76

Query: 140 RIGLYLINRPEWLIVDHACS---AYSYISVPLYDTLGPDAVKYVVNHAEIE--AIFCIPQ 194
            + L L N PE+++     S   A +  + P Y              AEI   A     +
Sbjct: 77  VVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTP------------AEIAKQAKASGAK 124

Query: 195 TLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS---------YLQLQSQGCS 245
            + T   ++                + L  L    GV +++         +    +Q   
Sbjct: 125 LIITQSCYV----------------DKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADE 168

Query: 246 SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA----GFSLMVQFYPSDIYM 301
           +  P     P+D+  + Y+SGTTG PKG +LTH  L+++VA    G +  + F+  D+ +
Sbjct: 169 NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVIL 228

Query: 302 SYLPLAHIYERANQIV--SVYYGVAVGFYQG-DNLKLMDDLAVLKPTIFPSVPRLYNRIY 358
             LP+ HIY   N ++   +  G A+      +   L++ +   K TI P VP       
Sbjct: 229 CVLPMFHIYS-LNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVP------- 280

Query: 359 AGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGS 418
                                       IV     S + ++   + IR         + S
Sbjct: 281 ---------------------------PIVLAIAKSPVVEKYDLSSIR--------MVLS 305

Query: 419 GASPLSPDVMDFLKVCFGCQVM-EGYGMTETSCIIS-----AIDKGDNLSGHVGSPNPAC 472
           GA+PL  ++ D  +      V+ +GYGMTE   +++     A +     SG  G+     
Sbjct: 306 GAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNA 365

Query: 473 EIKLVDVPEMNYTSEDQPHPR-GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGL 531
           E+K+VD PE   T    P  + GEIC+RGP + +GY  +   T   ID DGWLHTGDIG 
Sbjct: 366 ELKIVD-PE---TGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGY 421

Query: 532 WLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
                 L I+DR K + K  +G  VAP ++E
Sbjct: 422 IDDDDELFIVDRLKELIKY-KGFQVAPAELE 451

Length = 537

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  127 bits (322), Expect = 3e-32
 Identities = 70/217 (32%), Positives = 103/217 (47%), Gaps = 19/217 (8%)

Query: 412 RVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS--GHVGSPN 469
            +R +  GA+P+  ++   +   FG   ++GYGMTET    + +   D L   G VG P 
Sbjct: 116 SLRLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPV 175

Query: 470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDI 529
           P  E+++VD  +     E  P   GEI VRGP V  GY+     T E +  DGWLHTGD+
Sbjct: 176 PGVEVRIVD-EDGR---ELPPGEVGEIVVRGPAVMAGYWNRPEATAEAL-RDGWLHTGDL 230

Query: 530 GLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLV 586
           G     G L I+DRKK++     GE + P ++ENV      V    + G   + +   +V
Sbjct: 231 GYLDEDGYLYIVDRKKDMIISG-GENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVV 289

Query: 587 AIV------AVDPDVLKDWAASQ--GIKVIYCFSFRA 615
           A+V       +D + L  +   +  G KV     F  
Sbjct: 290 AVVVLRPGATLDAEELIAFCRERLAGYKVPKSVEFVD 326

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  129 bits (327), Expect = 1e-31
 Identities = 136/517 (26%), Positives = 215/517 (41%), Gaps = 89/517 (17%)

Query: 112 KWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDHA--CSAYSYISV-P 167
           K +TY E     ++  + LL    L+KG R+ L + N  ++ I       +  + ++V P
Sbjct: 49  KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNP 108

Query: 168 LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPS--- 224
           LY    P  +K+ +  +    +  I     T+   I++ P   +I    G     P    
Sbjct: 109 LYT---PRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAAL 165

Query: 225 -----------LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKG 273
                      +P       I + +  + G     P    +P+DIA + YT GTTG  KG
Sbjct: 166 VNFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKG 225

Query: 274 AVLTHGNLISNVAGFSLMVQFYPS-----DIYMSYLPLAHIYE-RANQIVSVYYGVAVGF 327
           A+LTH NL++N+      +          ++ ++ LPL HI+   AN +V +  G     
Sbjct: 226 AMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHL 285

Query: 328 YQG--DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ 385
                D    + +L   + T F  V  L+N    G+ N                      
Sbjct: 286 ISNPRDMPGFVKELKKTRFTAFTGVNTLFN----GLLN---------------------- 319

Query: 386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGM 445
                 TP   +D++ F+ ++  LGG +    S        V +  K   G  ++E YG+
Sbjct: 320 ------TPG--FDQIDFSSLKMTLGGGMAVQRS--------VAERWKQVTGLTLVEAYGL 363

Query: 446 TETS--CIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEI---CVRG 500
           TETS    I+ +   +  +G +G P P+ +  + D               GEI   C++G
Sbjct: 364 TETSPAACINPLTLKEY-NGSIGLPIPSTDACIKD-------DAGTVLAIGEIGELCIKG 415

Query: 501 PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEK 560
           P V +GY+K   +T +V+D DGWLHTGDI      G + I+DRKK++  L  G  V P +
Sbjct: 416 PQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMI-LVSGFNVYPNE 474

Query: 561 IENVYAKCKFVLQCFIYG----DSFNSCLVAIVAVDP 593
           IE+V A    VL+    G     S     V IV  DP
Sbjct: 475 IEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDP 511

Length = 560

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  124 bits (314), Expect = 3e-31
 Identities = 84/308 (27%), Positives = 129/308 (41%), Gaps = 56/308 (18%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
           P+D+A   +T GTTG PK A  +H N ++N    +L+    P D+ ++ LPL H+     
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHV---GG 57

Query: 315 QIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREK 374
            IV+    +A G            + +  P+ F + P +    +  I    + +      
Sbjct: 58  AIVTGLAPLARG----------ATVVLPTPSGFRN-PAVVANFW-KIVERYRVT------ 99

Query: 375 LFTA---AYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL 431
           L +A      +  Q  +     S +                 R+  +GA+PL  +V    
Sbjct: 100 LLSAVPTVLAALLQVPLGDADISSL-----------------RYALTGAAPLPVEVARRF 142

Query: 432 KVCFGCQVMEGYGMTETSCIISAID--KGDNLSGHVGSPNPACEIKLVDV-PEMNYTSED 488
           +   G  V+EGYGMTE +  +SAI+   G    G VG   P   +++  +        + 
Sbjct: 143 EAVTGVPVVEGYGMTEGTG-VSAINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDC 201

Query: 489 QPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIG-------LWLPGGRLK-- 539
            P   G + +RGP VF G Y N+         DGWL+TGD+G       LWL  GR K  
Sbjct: 202 APGEVGVLAIRGPNVFPG-YLNDAHNAGARLEDGWLNTGDLGRIDADGYLWL-TGRAKDL 259

Query: 540 IIDRKKNI 547
           II    NI
Sbjct: 260 IIRGGHNI 267

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  127 bits (320), Expect = 8e-31
 Identities = 119/503 (23%), Positives = 201/503 (39%), Gaps = 85/503 (16%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           +L D +       PD   +     VD    G  + TY  +  A   + + LL  G++ G 
Sbjct: 24  SLADYWQQTARAMPDKIAV-----VDNH--GASY-TYSALDHAASRLANWLLAKGIEPGD 75

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNT- 198
           R+   L    E+ I+  AC     +SVPL  +     + +V+N  + +  F       T 
Sbjct: 76  RVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTR 135

Query: 199 ----LLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS-YLQLQSQGCSSPQPFCPP 253
               +L   +++P +  IV V   D+  P+  S S  ++I+ Y  L +            
Sbjct: 136 PVDLILPLQNQLPQLQQIVGV---DKLAPATSSLSLSQIIADYEPLTT--------AITT 184

Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA 313
             +++A + +TSGT G PKG +LTH N++++   +   +     D++M   PL H     
Sbjct: 185 HGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH----- 239

Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
                     A GF  G          V  P +  +   L +     I         L  
Sbjct: 240 ----------ATGFLHG----------VTAPFLIGARSVLLD-----IFTPDACLALL-- 272

Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRV---RFMGSGASPLSPDVMDF 430
                    ++   + G TP  ++D L  N + ++    +   RF   G + +   V   
Sbjct: 273 -------EQQRCTCMLGATPF-IYDLL--NLLEKQ-PADLSALRFFLCGGTTIPKKV--- 318

Query: 431 LKVCF--GCQVMEGYGMTETSCIISAIDKGDNLSGHV---GSPNPACEIKLVDVPEMNYT 485
            + C   G +++  YG TE S   + ++  D LS  +   G      EIK+VD       
Sbjct: 319 ARECQQRGIKLLSVYGSTE-SSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD----EAR 373

Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
               P   GE   RGP VF GY      T   +D +GW ++GD+      G +KI  RKK
Sbjct: 374 KTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKK 433

Query: 546 NIFKLAQGEYVAPEKIENVYAKC 568
           +I  +  GE ++  ++E++  + 
Sbjct: 434 DII-VRGGENISSREVEDILLQH 455

Length = 547

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  125 bits (316), Expect = 1e-30
 Identities = 111/481 (23%), Positives = 189/481 (39%), Gaps = 92/481 (19%)

Query: 108 VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVP 167
             G +W TY E+ A    + + L   G   G R+ +   N    + +  AC+    I VP
Sbjct: 18  ALGRRW-TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVP 76

Query: 168 LYDTLGPDAVKYVVNHAEIEAIF--CIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSL 225
           L   L           +E++A+     P+                  +++G  D+ + + 
Sbjct: 77  LNWRLSA---------SELDALLQDAEPR------------------LLLG--DDAVAAG 107

Query: 226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
             T    L +++   S     P       PE ++ I +TSGT+G PKG +L+  NL    
Sbjct: 108 -RTDVEDLAAFIA--SADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTA 164

Query: 286 AGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVY-YG----VAVGFYQGDNLKLMDDLA 340
             F ++ +      ++   P+ HI      +  V   G    V+ GF     L  + D A
Sbjct: 165 HNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPA 224

Query: 341 VLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL 400
            L  T +  VP++     A             +  F AA      A+ +G          
Sbjct: 225 -LGITHYFCVPQMAQAFRA-------------QPGFDAAALRHLTALFTG---------- 260

Query: 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIIS-AIDKG- 458
                             GA   + D++ +L    G  +++G+GM+E   +   ++D   
Sbjct: 261 ------------------GAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDV 300

Query: 459 -DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREV 517
               +G  G P P  + ++VD    +  ++      GE+ +RGP +  GY++    T   
Sbjct: 301 IRAKAGAAGIPTPTVQTRVVD----DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARA 356

Query: 518 IDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY 577
             GDGW  TGDI      G   ++DRKK++F ++ GE V P +IE V A    + +C + 
Sbjct: 357 FTGDGWFRTGDIARRDADGFFWVVDRKKDMF-ISGGENVYPAEIEAVLADHPGIRECAVV 415

Query: 578 G 578
           G
Sbjct: 416 G 416

Length = 488

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  125 bits (316), Expect = 2e-30
 Identities = 117/501 (23%), Positives = 185/501 (36%), Gaps = 92/501 (18%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TYGE+       G+ L   G+++  R+ L L++ PE+            + VP+   L P
Sbjct: 32  TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91

Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPS---LPSTSGV 231
           D  +Y +N +    +    +    L   + + P +  ++VVGG      S   L +T+  
Sbjct: 92  DDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYAQLIATAAE 151

Query: 232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM 291
           +L +                    +D+A   Y+SG+TG PKG V  H +++     ++  
Sbjct: 152 ELEA---------------AATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKN 196

Query: 292 V-QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDD-------LAVL- 342
           V      D+  S   L   Y   N    +Y+ ++VG      + LM +        A + 
Sbjct: 197 VLGITEDDVVFSAAKLFFAYGLGN---GLYFPLSVG---ATTV-LMPERPTPDAVFATIE 249

Query: 343 --KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL 400
             KPT+F  VP LY  +                                          L
Sbjct: 250 RYKPTVFFGVPTLYAAM------------------------------------------L 267

Query: 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN 460
              +  ER    +R   S    L  ++    K  FG ++++G G TE   I  +   G  
Sbjct: 268 AAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGAV 327

Query: 461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEI---CVRGPIVFQGYYKNEVQTREV 517
             G  G P P  E+KLVD        + +    GEI    VRG     GY+    +TRE 
Sbjct: 328 KYGTSGKPVPGYEVKLVD-------EDGEEVADGEIGELWVRGDSSAAGYWNRREKTRET 380

Query: 518 IDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY 577
             G  W  TGD       G      R  ++ K   G +V+P ++E+   +   VL+  + 
Sbjct: 381 FVG-EWTRTGDKYYRDEDGYYWYCGRSDDMLK-VSGIWVSPFEVEDALLQHPAVLEAAVV 438

Query: 578 GDSFNSCLVAIVAVDPDVLKD 598
           G      L    A    VLKD
Sbjct: 439 GAEDEDGLTKPKAF--VVLKD 457

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  124 bits (314), Expect = 3e-30
 Identities = 121/491 (24%), Positives = 189/491 (38%), Gaps = 130/491 (26%)

Query: 107 TVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISV 166
           T  G ++ TYG++ AA   + + L+  G++ G R+ + +   PE L +  A      + +
Sbjct: 23  TPDGLRY-TYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFL 81

Query: 167 PLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLP 226
           PL        + Y +  AE                     P++  +V        L  + 
Sbjct: 82  PLNTAYTLAELDYFIGDAE---------------------PAL--VVCDPANFAWLSKIA 118

Query: 227 STSGVKLI---------SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLT 277
           + +G   +         S L+  +          P   +D+A I YTSGTTG  KGA+L+
Sbjct: 119 AAAGAPHVETLDADGTGSLLEAAA-AAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLS 177

Query: 278 HGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLM- 336
           HGNL+SN        +F P D+ +  LP+ H +               G +   N+ L+ 
Sbjct: 178 HGNLLSNALTLVDYWRFTPDDVLIHALPIFHTH---------------GLFVATNVALLA 222

Query: 337 ----------DDLAVLK----PTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNS 382
                     D  AVL      T+   VP  Y R+             L+E   T    +
Sbjct: 223 GASMIFLPKFDPDAVLALMPRATVMMGVPTFYTRL-------------LQEPRLTREAAA 269

Query: 383 KKQAIVSGQTPSKMWDRLV---FNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQV 439
             +  +SG  P      L+     + +ER G  +                          
Sbjct: 270 HMRLFISGSAP------LLAETHREFQERTGHAI-------------------------- 297

Query: 440 MEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEIC-- 497
           +E YGMTET+   S    G+  +G VG P P   +++ D PE          P GEI   
Sbjct: 298 LERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTD-PE-----TGAELPPGEIGMI 351

Query: 498 -VRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYV 556
            V+GP VF+GY++   +T E    DG+  TGD+G     G + I+ R K++  +  G Y 
Sbjct: 352 EVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDL--IISGGY- 408

Query: 557 APEKIENVYAK 567
                 NVY K
Sbjct: 409 ------NVYPK 413

Length = 504

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  121 bits (304), Expect = 9e-29
 Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 5/157 (3%)

Query: 418 SGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLV 477
           SG   L     +  K   GC + EGYGMTETS ++S         G +G P P+   K++
Sbjct: 333 SGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVI 392

Query: 478 DVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGR 537
           D  + N     +    GE+CV+GP V +GY++    T E++D DGWL TGDI L    G 
Sbjct: 393 D-DDGNELPLGEV---GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGY 448

Query: 538 LKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQC 574
           ++I+DRKK++  L  G  V P ++E+V A    VLQC
Sbjct: 449 MRIVDRKKDMI-LVSGFNVYPNELEDVLAALPGVLQC 484

Length = 562

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  120 bits (302), Expect = 1e-28
 Identities = 142/533 (26%), Positives = 213/533 (39%), Gaps = 114/533 (21%)

Query: 58  VYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYG 117
           ++RS R P   V      P+  TL D  +   E Y D      +V     V G K +TYG
Sbjct: 14  IFRS-RYPSVPV------PDKLTLPDFVLQDAELYAD------KVAFVEAVTG-KAVTYG 59

Query: 118 EVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAV 177
           EV    +     L   GL+KG  + + L N  E+ IV     A   +      T     +
Sbjct: 60  EVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEI 119

Query: 178 KYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKD--------EHLPSLPSTS 229
           K     A  + I  +    N       ++  + L V+V G++        + L      +
Sbjct: 120 KKQAEAAGAKLI--VTNDTN-----YGKVKGLGLPVIVLGEEKIEGAVNWKELLEAADRA 172

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAG-- 287
           G    +   LQ+  C+ P               ++SGTTG  KG +LTH NL++N+    
Sbjct: 173 GDTSDNEEILQTDLCALP---------------FSSGTTGISKGVMLTHRNLVANLCSSL 217

Query: 288 FSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYG--------VAVGFYQGDNLKLMDDL 339
           FS+  +     + +  +P  HIY     I  +           V +  +  +    ++ L
Sbjct: 218 FSVGPEMIGQVVTLGLIPFFHIY----GITGICCATLRNKGKVVVMSRF--ELRTFLNAL 271

Query: 340 AVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR 399
              + +  P VP +   I   + N +     L  KL       K QAI++   P      
Sbjct: 272 ITQEVSFAPIVPPI---ILNLVKNPIVEEFDL-SKL-------KLQAIMTAAAP------ 314

Query: 400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG 458
                                  L+P+++   +  F G QV E YG+TE SCI   +  G
Sbjct: 315 -----------------------LAPELLTAFEAKFPGVQVQEAYGLTEHSCI--TLTHG 349

Query: 459 DNLSGH-------VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNE 511
           D   GH       VG   P  E+K +D        ++ P   GE+CVR   V QGYY N+
Sbjct: 350 DPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTP---GELCVRSQCVMQGYYNNK 406

Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
            +T   ID DGWLHTGDIG     G + I+DR K + K  +G  VAP ++E +
Sbjct: 407 EETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAI 458

Length = 546

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score =  119 bits (301), Expect = 1e-28
 Identities = 113/431 (26%), Positives = 166/431 (38%), Gaps = 118/431 (27%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH----IY 310
           P+DIA I ++SG+TG PKG +LTH NL++N+       +    D+++S++PL H    I 
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTHDMGLI- 163

Query: 311 ERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLY----NRIYAGITNAVK 366
                +     G+        N  LM         +F   P L+    ++  A I     
Sbjct: 164 --GFHLTPTALGI--------NQYLMP------TRLFIRRPLLWLDKASQHRATIL---- 203

Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWD----RLVFNKIRERLGGRVRFMGSGASP 422
           +S     K     + ++K            WD    RL+FN               GA P
Sbjct: 204 SSPNFGYKYLLKHFKTEKI---------IDWDLSSVRLIFN---------------GAEP 239

Query: 423 LSPDVM-DFLKVCFGCQVME-----GYGMTETSCIIS----------------------- 453
           +S D+  +FL+      +        YG+ E +  +S                       
Sbjct: 240 ISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVK 299

Query: 454 --AIDKGDNLSG---HVGSPNPACEIKLVD-----VPEMNYTSEDQPHPRGEICVRGPIV 503
              ID  ++ +     VGSP   CEI++VD     +P+            G I ++G  V
Sbjct: 300 IIEIDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVLPDRTI---------GHIQIKGDNV 350

Query: 504 FQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN-IFKLAQGEYVAPEKIE 562
             GYY N   T++ I  DGWL TGD+G  L  GRL I  R K+ I    Q  Y  P  IE
Sbjct: 351 TSGYYNNPEATKKSITPDGWLKTGDLGF-LRNGRLVITGRAKDIIIVNGQNYY--PHDIE 407

Query: 563 NVYAK---CKF--VLQCFIYGDSFNSCLVAIVAVDPDVLKDWA-ASQGIK--VIYCFSFR 614
            V  +    K   V  C +Y +   S  V I       L D+   +  IK  V       
Sbjct: 408 RVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQSLDDFTPLALKIKRHVNKKMGLN 467

Query: 615 ANSHVIFIALI 625
            + HVI +  I
Sbjct: 468 ID-HVIPVRSI 477

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  119 bits (299), Expect = 4e-28
 Identities = 106/334 (31%), Positives = 150/334 (44%), Gaps = 71/334 (21%)

Query: 251 CPPKP----EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF------YPS--D 298
             PKP    +D+A I Y+SGTTG  KG VLTH NLI+ V    L V+F      YP   +
Sbjct: 189 FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMV---ELFVRFEASQYEYPGSDN 245

Query: 299 IYMSYLPLAHIYERANQIV---SVYYGVAV--GFYQGDNLKLMDDLAVLKPTIFPSVPRL 353
           +Y++ LP+ HIY  +  +V   S+   + V   F   D +K++D   V   T FP VP  
Sbjct: 246 VYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKV---THFPVVPP- 301

Query: 354 YNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRV 413
              I   +T   K               S KQ                            
Sbjct: 302 ---ILMALTKKAKGVCGE-------VLKSLKQ---------------------------- 323

Query: 414 RFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH--VGSPNP 470
             +  GA+PLS   + DF++       ++GYGMTE++ + +     + LS +  VG   P
Sbjct: 324 --VSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAP 381

Query: 471 ACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIG 530
             + K+VD    +      P   GE+ ++GP V +GY  N   T+  ID DGWL TGDI 
Sbjct: 382 NMQAKVVD---WSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIA 438

Query: 531 LWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
            +   G L I+DR K I K  +G  +AP  +E V
Sbjct: 439 YFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAV 471

Length = 560

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  117 bits (294), Expect = 7e-28
 Identities = 91/328 (27%), Positives = 128/328 (39%), Gaps = 76/328 (23%)

Query: 253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER 312
           P P+  A I YTSGTTG PKG VL+   + +++   +   Q+   D+ +  LPL H++  
Sbjct: 125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVH-- 182

Query: 313 ANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIY-------AGITNAV 365
                    G+ +G              VL P       R+ NR              A+
Sbjct: 183 ---------GLVLG--------------VLGPL------RIGNRFVHTGRPTPEAYAQAL 213

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
              GTL    F                P+ +W R+  +    R     R + SG++ L  
Sbjct: 214 SEGGTL---YFG--------------VPT-VWSRIAADPEAARALRGARLLVSGSAALPV 255

Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485
            V D L    G + +E YGMTET   +S    G+   G VG P    E +LVD       
Sbjct: 256 PVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDE-----D 310

Query: 486 SEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID 542
               PH     GE+ VRGP +F GY      T      DGW  TGD+ +  P G  +I+ 
Sbjct: 311 GGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVG 370

Query: 543 R------KKNIFKLAQGEYVAPEKIENV 564
           R      K   +++  GE      IE  
Sbjct: 371 RESTDLIKSGGYRIGAGE------IETA 392

Length = 471

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score =  118 bits (297), Expect = 7e-28
 Identities = 122/480 (25%), Positives = 194/480 (40%), Gaps = 89/480 (18%)

Query: 134 GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIP 193
           G+    R+G  + N  E L V  A +    +  PL   L  D + +++NHAE E I   P
Sbjct: 60  GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADP 119

Query: 194 QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPP 253
           +    L   + E P V  +V +G  D    +     G+K+ SY  L   G S+   + P 
Sbjct: 120 RLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD-GRSTVYDW-PE 177

Query: 254 KPEDI-ATICYTSGTTGTPKGAVLTHGNL----ISNVAGFSLMVQFYPSDIYMSYLPLAH 308
             E   A ICY++GTTG PKG V +H +L    +S     SL V    S  ++  +P+ H
Sbjct: 178 LDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGES--FLCCVPIYH 235

Query: 309 IYERANQIVSVYYGVAV-GFYQGDNLKLMDDLAVLKPTIFP----SVPRLYNRIYAGITN 363
           +         + +GV +  F  G             P +FP    S P L   I   +  
Sbjct: 236 V---------LSWGVPLAAFMSG------------TPLVFPGPDLSAPTLAKIIATAMPR 274

Query: 364 AVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPL 423
                 TL  +L    +  K         P +M  + ++                G S +
Sbjct: 275 VAHGVPTLWIQLMV--HYLKN-------PPERMSLQEIY---------------VGGSAV 310

Query: 424 SPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV--------GSPNPACEIK 475
            P ++   +  +G  V+  +GMTETS + +       +SG          G    + E +
Sbjct: 311 PPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYR 370

Query: 476 LVDVPE-MNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQT----------REVIDG---- 520
           +V+  + M  T  ++    GEI VRG  V   YY +  +            +V D     
Sbjct: 371 IVNDGQVMESTDRNE----GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRF 426

Query: 521 --DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
             DGWL TGD+G     G L I DR +++ + + GE++   ++EN       V++C + G
Sbjct: 427 TADGWLRTGDVGSVTRDGFLTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEVVECAVIG 485

Length = 576

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  117 bits (295), Expect = 1e-27
 Identities = 128/535 (23%), Positives = 213/535 (39%), Gaps = 102/535 (19%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T++D+    V + PD K   T VR+    G  +  TY E++A    +  GL   G+ +G 
Sbjct: 25  TINDDLDACVASCPD-KTAVTAVRLGT--GAPRRFTYRELAALVDRVAVGLARLGVGRGD 81

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---- 195
            +   L N  E+ ++  ACS    +  PL        + +++ HAE   +  +P+T    
Sbjct: 82  VVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAE-SKVLVVPKTFRGF 140

Query: 196 -----LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPF 250
                   L     E+P++  +VVVGG           S   L+     + Q   +P   
Sbjct: 141 DHAAMARRLR---PELPALRHVVVVGGDGA-------DSFEALLITPAWE-QEPDAPAIL 189

Query: 251 CP--PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH 308
               P P+D+  + YTSGTTG PKG + T   L++N+  ++  +     D+ +   P+AH
Sbjct: 190 ARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAH 249

Query: 309 IYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKAS 368
                            GF  G  + +M     L  T           +   I +  +A+
Sbjct: 250 Q---------------TGFMYGLMMPVM-----LGATA----------VLQDIWDPARAA 279

Query: 369 GTLREK--LFTAAYNSKKQAIVSGQTP--SKMWDRLVFNKIRERLGGRVRFMGSGASPLS 424
             +R +   FT A            TP  + +       +    +     F+ +GA P+ 
Sbjct: 280 ELIRTEGVTFTMA-----------STPFLTDLTR--AVKESGRPVSSLRTFLCAGA-PIP 325

Query: 425 PDVMDFLKVCFGCQVMEGYGMTETSC--IISAIDKGDNLSGHVGSPNPACEIKLVDVPEM 482
             +++  +   G +++  +GMTE     +    D  +  S   G P P  E+++VD    
Sbjct: 326 GALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD---- 381

Query: 483 NYTSEDQPHPRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
              ++  P P G+I    VRG   F GY K         D DGW  TGD+      G ++
Sbjct: 382 ---ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT--DADGWFDTGDLARIDADGYIR 436

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPD 594
           I  R K++  +  GE +   +IE +  +   + Q            VAIVA  PD
Sbjct: 437 ISGRSKDVI-IRGGENIPVVEIEALLYRHPAIAQ------------VAIVAY-PD 477

Length = 547

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  114 bits (287), Expect = 3e-27
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 24/175 (13%)

Query: 439 VMEGYGMTETSCIISAIDKGDNL--SGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEI 496
           +   YGMTET+  ++ +   D L   G VG P P  E+++V+  +            GEI
Sbjct: 216 LYPTYGMTETASQVATLKPDDFLAKLGSVGKPLPGRELRIVNPQD------------GEI 263

Query: 497 CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYV 556
            VRGP +F GY      T  + D DGW HTGD+G     G L ++ R+ ++  ++ GE +
Sbjct: 264 LVRGPSLFLGYLPQGGLTPPL-DEDGWFHTGDLGYLDAEGYLYVLGRRDDLI-ISGGENI 321

Query: 557 APEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIV-----AVDPDVLKDWAASQ 603
            PE+IE V  +   V +  + G   D +    VA V      V  + L+ + A +
Sbjct: 322 YPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDPVSVEELQAFLADK 376

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score =  115 bits (291), Expect = 5e-27
 Identities = 98/460 (21%), Positives = 167/460 (36%), Gaps = 119/460 (25%)

Query: 109 GGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI-----VDHACSAYS- 162
           G ++ +TY E     + I   LL  GL            RP  +I     ++HA  A + 
Sbjct: 21  GEWRRVTYAEALRQVRAIAQALLDLGLSAE---------RP-LMILSGNSIEHALLALAA 70

Query: 163 -YISVPL------YDTLGPD--AVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIV 213
            Y  VP+      Y  L  D   ++++ +     A+F   +        ++ +    + V
Sbjct: 71  MYAGVPVAPVSPAYSLLSKDFAKLRHIFDLLTPGAVFA--EDGAAFARALAALGLAGVPV 128

Query: 214 VVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKG 273
           V        P++   +       L       +    F    P+ +A   +TSG+TG PK 
Sbjct: 129 VAVRGAPGGPAIAFAA-------LLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKA 181

Query: 274 AVLTHGNLISNVAGFSLMVQFYPSD--IYMSYLPLAHIYERANQIV--SVYYG------- 322
            + TH  L +N A  +    F   +  + + +LP  H +   N      +Y G       
Sbjct: 182 VINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFG-GNHNFNMVLYNGGTLYIDD 240

Query: 323 ---VAVGFYQG-DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTA 378
              V   F +   NL+       + PT++ +VP+ +  +     +A++    LR + F  
Sbjct: 241 GKPVPGLFEETLRNLRE------VSPTVYFNVPKGFEML----VDALERDAALRRRFF-- 288

Query: 379 AYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL-----KV 433
                                            R+R +    + L  DV D L     + 
Sbjct: 289 --------------------------------KRLRLLFYAGAALPQDVWDRLQALAVRT 316

Query: 434 CFGCQV--MEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPH 491
             G ++    G G TET+   + +    + SG +G P P  E+KLV              
Sbjct: 317 T-GERIPMTSGLGATETAPTATFVHWPTDRSGVIGLPAPGTELKLV-------------- 361

Query: 492 PRG---EICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGD 528
           P G   E+ V+GP V  GY+++   T E  D +G+   GD
Sbjct: 362 PNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGD 401

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score =  113 bits (286), Expect = 3e-26
 Identities = 112/520 (21%), Positives = 184/520 (35%), Gaps = 156/520 (30%)

Query: 63  RSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAA 122
           RS   L     D+P    L D  ++  +  PD  +L  R    G  GG++ +TY E    
Sbjct: 29  RSAEPL----GDYPR--RLTDRLVHWAQEAPDRVFLAER----GADGGWRRLTYAEALER 78

Query: 123 RKEIGSGLLFHGLQKGVRIGLYLINRPEWLI-----VDHA----------------CSAY 161
            + I   LL  GL            RP  +I     ++HA                  AY
Sbjct: 79  VRAIAQALLDRGLSAE---------RP-LMILSGNSIEHALLALAAMYAGVPYAPVSPAY 128

Query: 162 SYISVPL------YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVV 215
           S +S          + L P  V +  + A                  ++ +    + VV 
Sbjct: 129 SLVSQDFGKLRHVLELLTPGLV-FADDGAAFARA-------------LAAVVPADVEVVA 174

Query: 216 GGKDEHLPSLPSTSGVKLISYLQLQSQGCSS--PQPFCPPKPEDIATICYTSGTTGTPKG 273
                      +  G     +  L +   ++          P+ IA   +TSG+TG PK 
Sbjct: 175 VR--------GAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKA 226

Query: 274 AVLTHGNLISNVAGFSLMVQFYPSD-----IYMSYLPLAHIYERANQIV--SVYYG---- 322
            + TH  L +N     ++ Q +P       + + +LP  H +   N  +   +Y G    
Sbjct: 227 VINTHRMLCANQQ---MLAQTFPFLAEEPPVLVDWLPWNHTFG-GNHNLGIVLYNGGTLY 282

Query: 323 ------VAVGFYQG-DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKL 375
                    GF +   NL+ +       PT++ +VP+ +      +  A++    LR + 
Sbjct: 283 IDDGKPTPGGFDETLRNLREI------SPTVYFNVPKGW----EMLVPALERDAALRRRF 332

Query: 376 FTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL---- 431
           F                                   R++ +    + LS DV D L    
Sbjct: 333 F----------------------------------SRLKLLFYAGAALSQDVWDRLDRVA 358

Query: 432 -KVCFGCQV--MEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSED 488
              C G ++  M G GMTET+   +      + +G++G P P CE+KLV V         
Sbjct: 359 EATC-GERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPV-------GG 410

Query: 489 QPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGD 528
               + E+ V+GP V  GY++    T E  D +G+  +GD
Sbjct: 411 ----KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGD 446

Length = 614

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  109 bits (275), Expect = 4e-26
 Identities = 82/378 (21%), Positives = 131/378 (34%), Gaps = 87/378 (23%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
            +D+A I YTSG+TG PKG +L+H NL +     +  ++    D  ++ LP +  Y   +
Sbjct: 1   DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYG-LS 59

Query: 315 QIVSVYYGVAVGFYQGDNLKLM----------DDLAVLKPTIFPSVPRLYNRIYAGITNA 364
           Q+++        F  G  L L             LA  + T F  VP  +          
Sbjct: 60  QLLTA-------FRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTW---------- 102

Query: 365 VKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLS 424
                    +L                              RE     +R++ +    L 
Sbjct: 103 --------AQLLRLD-----------------------PLAREDFP-SLRYLTNAGGALP 130

Query: 425 PDVMDFLKVCF-GCQVMEGYGMTE-TSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEM 482
              +  L+  F   ++   YG+TE         ++ D     +G   P  E+ +VD    
Sbjct: 131 AKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIGKAIPNVELWVVD---- 186

Query: 483 NYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVID-----GDGWLHTGDIGLWLP 534
               +         GE+  RG  V +GY+ +   T E +      G+  L+TGD+     
Sbjct: 187 ---EDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDE 243

Query: 535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAV--- 591
            G L  + RK ++ K   G  V+P +IE V      V +  + G        AIVAV   
Sbjct: 244 EGYLYFVGRKDDMIKTR-GYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVS 302

Query: 592 ------DPDVLKDWAASQ 603
                 D   L       
Sbjct: 303 ADGESLDEKELLKHCRKH 320

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  112 bits (281), Expect = 5e-26
 Identities = 124/470 (26%), Positives = 206/470 (43%), Gaps = 77/470 (16%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYIS-----VPL 168
           +TY E+ A  +   + LL  G  K   + LYL N P     DH  + +  +      V L
Sbjct: 47  ITYTELEAMAETAAAALLRAGYGKDASVALYLGNTP-----DHPINFFGALKAGARVVHL 101

Query: 169 YDTLGPDAVKYVVNH--AEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHL---- 222
               G  A+ + ++   A +     +   L   L F+ +     LIV    +D++     
Sbjct: 102 SPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVC---EDDNWGKVG 158

Query: 223 -PSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNL 281
            P  P  +  ++++Y     +G ++P  +    P+D+A + YT GTTG PKGA+LTHGNL
Sbjct: 159 TPQAPIPADPRIVTYADF-VKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNL 217

Query: 282 ISNVAGFSL---MVQFYPSDIY--MSYLPLAHIYERANQIV-SVYYGVAVGFYQG-DNLK 334
            S V+ + +     +    D+   +  LPL HIY     ++ S+  G  +  +Q  D   
Sbjct: 218 TSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAA 277

Query: 335 LMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS 394
           +  D+   + T+FP VP ++                                I     PS
Sbjct: 278 VFRDIEEKRATVFPGVPTMW--------------------------------IALANDPS 305

Query: 395 KMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTET-SCIIS 453
                     + +R    +  +GSG +PL  +V +F +   G ++  G+GMTET S    
Sbjct: 306 ----------LEKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTG 355

Query: 454 AIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR-GEICVRGPIVFQGYYKNEV 512
              +G +  G +G   P  E+   DV  ++  ++  P    GE+ +RGP V +GY+    
Sbjct: 356 HPPEGPDKPGSIGLMLPGIEL---DVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPE 412

Query: 513 QTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
           ++ E   GD +L TGDIG     G   ++DRKK++  ++ G  V P+ IE
Sbjct: 413 ESAEAFVGDRFL-TGDIGYMDTDGYFFLVDRKKDMI-ISGGFNVYPQMIE 460

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score =  113 bits (284), Expect = 1e-25
 Identities = 112/467 (23%), Positives = 181/467 (38%), Gaps = 92/467 (19%)

Query: 114  MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
            +TY ++      +    L      G  +G+ L N     +   A  +   +   +  + G
Sbjct: 659  LTYRKL-LTGAFVLGRKLKKNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAG 717

Query: 174  PDAVKYVVNHAEIEAIFC----IPQT----LNTLLSFISEIPSVHLIVVVGGKDEHLPSL 225
               +      A+++ +      I +     L   L F      + +I        +L  +
Sbjct: 718  IANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEF-----GIRII--------YLEDV 764

Query: 226  PSTSGV--KLISYLQLQSQGCSSPQ-PFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLI 282
             +  G+  K+   L         P   FC   P+D A I +TSG+ GTPKG VL+H NL+
Sbjct: 765  RAQIGLADKIKGLLAG-----RFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLL 819

Query: 283  SNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVL 342
            +N A  +  + F P D   + LP+ H            +G+  G        ++  L+ +
Sbjct: 820  ANRAQVAARIDFSPEDKVFNALPVFH-----------SFGLTGGL-------VLPLLSGV 861

Query: 343  KPTIFPS------VPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM 396
            K  ++PS      +P L   IY   TNA    GT     F   Y             ++ 
Sbjct: 862  KVFLYPSPLHYRIIPEL---IYD--TNATILFGT---DTFLNGY-------------ARY 900

Query: 397  WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAID 456
                 F          +R++ +GA  +  +        FG +++EGYG+TET+ +I+   
Sbjct: 901  AHPYDFR--------SLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNT 952

Query: 457  KGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTRE 516
               N +G VG   P  E +L  VP ++          G + VRGP V  GY + E     
Sbjct: 953  PMHNKAGTVGRLLPGIEYRLEPVPGID--------EGGRLFVRGPNVMLGYLRAENPGVL 1004

Query: 517  VIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
                DGW  TGDI      G + I  R K   K+A GE ++   +E 
Sbjct: 1005 EPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAVEE 1050

Length = 1140

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score =  110 bits (275), Expect = 3e-25
 Identities = 120/523 (22%), Positives = 200/523 (38%), Gaps = 97/523 (18%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T++D+F  AV N PD   L T  R     G  +  +Y E+      I  GL   G+ +G 
Sbjct: 23  TINDHFDAAVANCPDKPAL-TAYRDGH--GAVRRFSYRELDCRVDRIAVGLARLGVGRGD 79

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN-- 197
            +   L NR E+  +  AC+    +  PL        + +++NHA+   +F +P      
Sbjct: 80  VVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHAD-SKVFVVPSVFRGF 138

Query: 198 ----TLLSFISEIPSVHLIVVVGGK-----DEHLPSLPSTSGVKLISYLQLQSQGCSSPQ 248
                     S++P++  +VV+ G      D  L +          + L           
Sbjct: 139 DHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAAAILAGPR------- 191

Query: 249 PFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH 308
               P P+D+  + YTSGTTG PKG + T   L SN+  ++  ++    D+ +   P+AH
Sbjct: 192 ----PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAH 247

Query: 309 IYERANQIVSVYYGVAVGFYQGDNLKLM-DDLAVLKPTIFPSVPRLYNRIYAGITNAVKA 367
                            GF  G  + L+ +  AVL+                 I N  +A
Sbjct: 248 Q---------------TGFMYGLMMPLILNATAVLQD----------------IWNPARA 276

Query: 368 SGTLREKLFT-----AAYNSKKQAIV--SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGA 420
           +  +RE   T       + +     V  SG     ++                 F+ +GA
Sbjct: 277 AELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFT----------------FLCAGA 320

Query: 421 SPLSPDVMDFLKVCFGCQVMEGYGMTETSCI-ISAIDKGDNLSGHV-GSPNPACEIKLVD 478
            P+   +++      G  ++  +GMTE   + ++  D     +    G P P  E+K++D
Sbjct: 321 -PIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID 379

Query: 479 VPEMNYTSEDQPHPRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG 535
                  +      +GE     VRG   F GY K         D +GW  TGD+      
Sbjct: 380 -------ANGAKLSQGETGRLLVRGCSNFGGYLKRP--HLNSTDAEGWFDTGDLAFQDAE 430

Query: 536 GRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
           G ++I  R K++  +  GE +   +IEN+  +   V Q  I  
Sbjct: 431 GYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVAIVA 472

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score =  106 bits (266), Expect = 2e-24
 Identities = 79/319 (24%), Positives = 119/319 (37%), Gaps = 62/319 (19%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLI---SNVAGFSLMVQFYPSDIYMSYLPLAHIYE 311
            +DIA   YTSGTTG PKG +  H + +      A   L +Q  P D   S   L   Y 
Sbjct: 90  ADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQ--PGDRIFSSSKLFFAYG 147

Query: 312 RANQIVSVYYGVAVG----FYQG--DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
             N   S+ + +  G       G      ++D LA  +PT+   VP LY  +        
Sbjct: 148 LGN---SLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRAL-------- 196

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
                                + SG   +              L   VR   S    L  
Sbjct: 197 ---------------------LESGAGSA-------------PLFRSVRLCVSAGEALPA 222

Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485
            + +      G ++++G G TE   I  +   G    G  G P P  E +LVD       
Sbjct: 223 GLAERWAEATGIEILDGIGSTEVLHIFISNRPGAARPGTTGRPVPGYEARLVD-ESGREV 281

Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
                   G++ VRGP +  GY+    +T+  +  DGWL TGD       G  +   R  
Sbjct: 282 PAGTV---GDLWVRGPSLAPGYWNLPEKTQRTL-RDGWLRTGDRFSRDADGWYRYQGRAD 337

Query: 546 NIFKLAQGEYVAPEKIENV 564
           ++ K++ G++V+P ++E  
Sbjct: 338 DMIKVS-GQWVSPLEVEAA 355

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score =  107 bits (268), Expect = 2e-24
 Identities = 98/397 (24%), Positives = 146/397 (36%), Gaps = 99/397 (24%)

Query: 203 ISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL---QLQSQGCSSPQPFCPPKPEDIA 259
              +PS+   V +        S  S+  + L S+L    L+ +   + +      P+D  
Sbjct: 123 NDRLPSLMWQVFLE-------SPSSSVFIFLNSFLTTEMLKQRALGTTELDYAWAPDDAV 175

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSV 319
            IC+TSGTTG PKG  ++H  LI        +V +   D+Y+   PL HI      + S 
Sbjct: 176 LICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHI----GGLSSA 231

Query: 320 YYGVAVG--------FYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTL 371
              + VG        F     L+ +    V   T   +VP                   +
Sbjct: 232 LAMLMVGACHVLLPKFDAKAALQAIKQHNV---TSMITVP-----------------AMM 271

Query: 372 REKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL 431
            +             ++S    S  W   VF  +R+ L G           LS  ++   
Sbjct: 272 AD-------------LISLTRKSMTWK--VFPSVRKILNG--------GGSLSSRLLPDA 308

Query: 432 KVCFGC-QVMEGYGMTET-----------------SCIISAIDKGDNLSGH------VGS 467
           K  F   ++   YGMTE                     +  +++  + S H      VG 
Sbjct: 309 KKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGK 368

Query: 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG 527
           P P  E+K+           D+    G I  RGP V  GY+    +T  V+  DGWL TG
Sbjct: 369 PAPHVELKI---------GLDESSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTG 419

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           DIG     G L +I R  +  K   GE V PE++E V
Sbjct: 420 DIGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAV 455

Length = 563

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  107 bits (267), Expect = 3e-24
 Identities = 95/324 (29%), Positives = 151/324 (46%), Gaps = 63/324 (19%)

Query: 251 CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM-VQFY-----PSDIYMSYL 304
           C P+  D+A + YT GTTG PKG +LTH NL+SN    +LM VQ+        ++ +  L
Sbjct: 202 CDPE-NDLALLQYTGGTTGFPKGVMLTHKNLVSN----TLMGVQWLYNCKEGEEVVLGVL 256

Query: 305 PLAHIY-ERANQIVSVYYGVAVGFYQGDNLKLM-DDLAVLKPTIFPSVPRLYNRIYAGIT 362
           P  H+Y   A   +S+  G  +      ++K++ + +   K T+FP  P +Y        
Sbjct: 257 PFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYI------- 309

Query: 363 NAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASP 422
            A+  S  L+E   ++                                  +R   SG++P
Sbjct: 310 -ALLNSPLLKEYDISS----------------------------------IRACISGSAP 334

Query: 423 LSPDVMDFLKVCFGCQVMEGYGMTETSCII-SAIDKGDNLSGHVGSPNPACEIKLVDVPE 481
           L  +V +  +   G +++EGYG+TE+S +  S       + G +G P P  E  ++ +  
Sbjct: 335 LPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLE- 393

Query: 482 MNYTSED-QPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
              T E   P   GEI V+GP + +GY+    +T  V+  DGWLHTGD+G     G   +
Sbjct: 394 ---TGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQ-DGWLHTGDVGYMDEDGFFYV 449

Query: 541 IDRKKNIFKLAQGEYVAPEKIENV 564
            DRKK++  +A G  V P ++E V
Sbjct: 450 KDRKKDMI-VASGFNVYPREVEEV 472

Length = 563

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  105 bits (264), Expect = 6e-24
 Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 22/208 (10%)

Query: 412 RVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH-VGSP-N 469
            +R +  G +PLSP++   ++   GC + + +GM E     + +D   ++     G P +
Sbjct: 256 SLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRPIS 315

Query: 470 PACEIKLVDVPEMNYTSEDQPHPRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHT 526
           PA EI++VD        + +P P GE+     RGP   +GYY+           DG+  T
Sbjct: 316 PADEIRIVDD-------QGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRT 368

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVL--QCFIYGDSF--- 581
           GD+      G  +++ R K+      GE ++PE+IEN+      V         D     
Sbjct: 369 GDLVRIDADGYYRVVGRIKDQINRG-GEKISPEEIENLLLSHPAVADAAVVGMPDEVLGE 427

Query: 582 NSCLVAI----VAVDPDVLKDWAASQGI 605
             C   +     A     L+ +   QG+
Sbjct: 428 RICAFVVPRGGAAPTLAELRAFLREQGL 455

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  104 bits (261), Expect = 8e-24
 Identities = 84/339 (24%), Positives = 134/339 (39%), Gaps = 69/339 (20%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPS--DIYMSYLPLAHIYER 312
            +D A + YTSGTTG PKGA+  H  L+ ++ G  L  +  P   D++ +    A I   
Sbjct: 87  SDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVFWTPADWAWIGGL 146

Query: 313 ANQIV-SVYYGVAV------GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
            + ++ ++Y+GV V       F       LM    V    + P+  ++  R+ +      
Sbjct: 147 LDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMRRVGS------ 200

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
                                          +D             R+R + SG   L  
Sbjct: 201 ---------------------------ERARYDL------------RLRAVASGGESLGE 221

Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIIS-AIDKGDNLSGHVGSPNPACEIKLVDVPEMNY 484
           +++++ +   G  V E YG TE + ++      G    G +G P P  E+ +VD      
Sbjct: 222 ELLEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGHEVAVVD------ 275

Query: 485 TSEDQPHP---RGEICVR--GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
               +P P    GEI V+   P++F GY+ N   T     GD WL TGD+G     G L 
Sbjct: 276 -DAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGD-WLLTGDLGRRDADGYLW 333

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
              R  ++ K + G  + P +IE    K   VL+  + G
Sbjct: 334 FKGRADDVIKSS-GYRIGPAEIEECLLKHPAVLEAAVVG 371

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  105 bits (265), Expect = 8e-24
 Identities = 103/456 (22%), Positives = 167/456 (36%), Gaps = 90/456 (19%)

Query: 131 LFH--GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEA 188
           L H  G+  G  +   L N PE         A   I+ P+   L P+ +  ++  A  + 
Sbjct: 74  LLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKV 132

Query: 189 IFCI---PQT--LNTLLSFISEIPSVHLIVVVGG-------KDEHLPSLPSTSGVKLISY 236
           +  +   P T     +   ++ +P +  +V V         K   +P +   +  +++ +
Sbjct: 133 LVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDF 192

Query: 237 LQLQSQGCSSPQPFC--PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF 294
               +      + F   P  P+D+A   +T GTTG PK A  THGN ++N    +L++  
Sbjct: 193 DAELA-RQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGL 251

Query: 295 YPSDIYMSYLPLAHIYERANQIV-------SVYYGVAVGFYQGDNLKLMDDL----AVLK 343
            P D     LPL H+       +        V      G Y+G    ++ +        +
Sbjct: 252 GPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQG-YRGPG--VIANFWKIVERYR 308

Query: 344 PTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFN 403
                 VP +Y  +     +    S             S + A+  G  P  +    VF 
Sbjct: 309 INFLSGVPTVYAALLQVPVDGHDIS-------------SLRYAL-CGAAPLPV---EVFR 351

Query: 404 KIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISA--IDKGDNL 461
           +     G R+                           EGYG+TE +C+ S    D G+  
Sbjct: 352 RFEAATGVRIV--------------------------EGYGLTEATCVSSVNPPD-GERR 384

Query: 462 SGHVGSPNPACEIKLVDV-PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG 520
            G VG   P   +++V +     Y  +      G +C+ GP VF GY       + +   
Sbjct: 385 IGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYL-EAAHNKGLWLE 443

Query: 521 DGWLHTGDIG-------LWLPGGRLK--IIDRKKNI 547
           DGWL+TGD+G        WL  GR K  II    NI
Sbjct: 444 DGWLNTGDLGRIDADGYFWLT-GRAKDLIIRGGHNI 478

Length = 632

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  103 bits (259), Expect = 2e-23
 Identities = 83/366 (22%), Positives = 124/366 (33%), Gaps = 85/366 (23%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
           P+D+A I +TSG+TG PKG  ++H NL S +            D++ +  P        +
Sbjct: 96  PDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEGDVFSNQAPF-------S 148

Query: 315 QIVSV---YYGVAVG--------FYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITN 363
             +SV   +  +A G            D L L + L     T++ SVP            
Sbjct: 149 FDLSVFDLFPALASGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVPSF---------- 198

Query: 364 AVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPL 423
              AS  L  +                  PS    R               F G     L
Sbjct: 199 ---ASLLLLSRELN-----------PESLPSL---RTFL------------FCGE---VL 226

Query: 424 SPDVMDFLKVCF-GCQVMEGYGMTETSCIISAID-----KGDNLSGHVGSPNPACEIKLV 477
              +   L+  F   +++  YG TE +  ++A +        N    +G P P     ++
Sbjct: 227 PKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRALIL 286

Query: 478 DVPEMNYTSEDQ----PHPRGEICVRGPIVFQGYYKNEVQTREV---IDGDGWLHTGDIG 530
           D        ED     P   GE+ + GP V  GY  N  +T +     +G  W  TGD+ 
Sbjct: 287 D--------EDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLV 338

Query: 531 LWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI---YGDSFNSCLVA 587
                G L  + RK    KL  G  +  E+IE        V +  +           LVA
Sbjct: 339 YLEDDGLLVYLGRKDFQIKL-HGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVA 397

Query: 588 IVAVDP 593
            V    
Sbjct: 398 FVVGKE 403

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  102 bits (255), Expect = 1e-22
 Identities = 56/134 (41%), Positives = 77/134 (57%), Gaps = 11/134 (8%)

Query: 436 GCQVMEGYGMTETSCIISAIDKGDNLSGHVGS---PNPACEIKLVDVPEMNYTSEDQPHP 492
           G  ++EGYG+TE S ++S      +L  + GS   P P+ EIKLVD  + N     +P  
Sbjct: 350 GQYLLEGYGLTECSPLVSVNPY--DLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEP-- 404

Query: 493 RGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQ 552
            GE+ V+GP V  GY++    T EVI  DGWL TGDI +    G L+I+DRKK++  L  
Sbjct: 405 -GELWVKGPQVMLGYWQRPEATDEVIK-DGWLATGDIAVMDEEGFLRIVDRKKDMI-LVS 461

Query: 553 GEYVAPEKIENVYA 566
           G  V P +IE+V  
Sbjct: 462 GFNVYPNEIEDVVM 475

Length = 560

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score =  100 bits (252), Expect = 1e-22
 Identities = 88/352 (25%), Positives = 130/352 (36%), Gaps = 89/352 (25%)

Query: 258 IATIC---YTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
           I       YTSGTTG PK A+++H   +   A F  +    P D+    LPL H    +N
Sbjct: 80  IVDPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYH----SN 135

Query: 315 QIVSVYYGVAVGFYQGDNLKL---------MDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
              ++  G +     G +L L           D+     T F  V  L            
Sbjct: 136 ---ALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGEL------------ 180

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
                 R  L                 P K  DR   + +R+ +G  +R          P
Sbjct: 181 -----CRYLL---------------NQPEKPDDRD--HPLRKIIGNGLR----------P 208

Query: 426 DVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDV----- 479
           D+ D  K  FG  +++E YG TE    +  I+   N  G VG   P   I +V       
Sbjct: 209 DIWDEFKERFGVPRIVEFYGSTE--GNVGFINL-FNKPGAVG-RLPPAAIAVVKYDVETE 264

Query: 480 -PEMNYTSEDQPHPRGE-------ICVRGPIVFQGYYKNEVQTREVI-----DGDGWLHT 526
            P  +        P GE       I  R P  F GY  +E   ++++      GD + +T
Sbjct: 265 EPIRDANGFCIKVPPGEVGLLLGEITDRNP--FDGYTDDEATEKKILRDVFKKGDAYFNT 322

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
           GD+      G    +DR  + F+  +GE V+  ++E V AK   V +  +YG
Sbjct: 323 GDLVRRDGFGYFYFVDRLGDTFRW-KGENVSTTEVEEVLAKHPGVEEANVYG 373

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 99.6 bits (249), Expect = 2e-22
 Identities = 88/393 (22%), Positives = 145/393 (36%), Gaps = 67/393 (17%)

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
           L+FI E     L++        L  L     +     L       + P P  P  P+D+A
Sbjct: 64  LAFILEDAGARLLLTDSALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPSGPDDLA 123

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSV 319
            + YTSG+TG PKG V+TH +L++ +A  +      P D  + +  L+            
Sbjct: 124 YVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSF----------- 172

Query: 320 YYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKL-FTA 378
                             D +V    IF +       + AG T  V      R+     A
Sbjct: 173 ------------------DASVE--EIFGA-------LLAGATLVVPPEDEERDDAALLA 205

Query: 379 AYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD-FLKVCFGC 437
           A  ++    V   TPS +   L            +R +  G   L+P ++D +     G 
Sbjct: 206 ALIAEHPVTVLNLTPS-LLALLA--AALPPALASLRLVILGGEALTPALVDRWRARGPGA 262

Query: 438 QVMEGYGMTETSC-----IISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP 492
           +++  YG TET+      ++   D        +G P     + ++D        + +P P
Sbjct: 263 RLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLD-------DDLRPVP 315

Query: 493 R---GEICVRGPIVFQGYYKNEVQTREVI--------DGDGWLHTGDIGLWLPGGRLKII 541
               GE+ + GP V +GY      T E          DG     TGD+  +LP G L+ +
Sbjct: 316 VGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFL 375

Query: 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQC 574
            R  +  K+ +G  +   +IE    +   V + 
Sbjct: 376 GRIDDQVKI-RGYRIELGEIEAALLRHPGVREA 407

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score =   99 bits (249), Expect = 4e-22
 Identities = 114/482 (23%), Positives = 185/482 (38%), Gaps = 77/482 (15%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           ++Y +++    ++   L   GL  G R+ L + +  E+++   A S    + VPL D   
Sbjct: 44  ISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPAL 102

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
           P A +  V      A   +                  L V VGG         S   V L
Sbjct: 103 PIA-EQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLS---VHL 158

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
            +  +      S+P+   P    D A I +T GTTG PK    TH N+ S+V       +
Sbjct: 159 DAATEPTPA-TSTPEGLRP----DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYR 213

Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYG------VAVGFYQGDNLKLMDDLAVLKPTIF 347
             P D  ++ +PL H +     +++           A G +        DD+  +  T +
Sbjct: 214 LSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTF--WDDIKAVGATWY 271

Query: 348 PSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRE 407
            +VP ++ +I             L E+  T     K  A+                    
Sbjct: 272 TAVPTIH-QI-------------LLERAATEPSGRKPAAL-------------------- 297

Query: 408 RLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTE-----TSCIISAIDKGDNLS 462
                 RF+ S ++PL+ +    L+  F   V+  +GMTE     T+  I  I + +N  
Sbjct: 298 ------RFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPV 351

Query: 463 GHVG--SPNPACEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREV 517
              G    +   +I++V        S+  P P    GE+ +RG  V +GY  +   T   
Sbjct: 352 VSTGLVGRSTGAQIRIVG-------SDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAAN 404

Query: 518 IDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY 577
              DGWL TGD+G     G L I  R K +     GE ++PE++E V A    V++  ++
Sbjct: 405 FT-DGWLRTGDLGSLSAAGDLSIRGRIKELINRG-GEKISPERVEGVLASHPNVMEAAVF 462

Query: 578 GD 579
           G 
Sbjct: 463 GV 464

Length = 534

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  100 bits (250), Expect = 5e-22
 Identities = 55/145 (37%), Positives = 82/145 (56%), Gaps = 8/145 (5%)

Query: 436 GCQVMEGYGMTETSCIISAIDKGDNLS--GHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
           GC ++EGYG+TETS + S    G  L+  G VG P P   +K++D    +  +E     R
Sbjct: 358 GCTIVEGYGLTETSPVASTNPYG-ELARLGTVGIPVPGTALKVID----DDGNELPLGER 412

Query: 494 GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG 553
           GE+C++GP V +GY++    T E +D +GW  TGDI +  P G ++I+DRKK++  +  G
Sbjct: 413 GELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLI-IVSG 471

Query: 554 EYVAPEKIENVYAKCKFVLQCFIYG 578
             V P +IE+V      V  C   G
Sbjct: 472 FNVYPNEIEDVVMAHPKVANCAAIG 496

Length = 562

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 99.4 bits (248), Expect = 8e-22
 Identities = 124/517 (23%), Positives = 180/517 (34%), Gaps = 121/517 (23%)

Query: 89  VENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR 148
            E YPD       +   GT       TY E + A       L   G+++G R+ L   NR
Sbjct: 31  AERYPD----RPLLVFGGT-----RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNR 81

Query: 149 PEWLIVDHACSAYSYISVP---------LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
            E+L V   C+    I+VP         L   L     + +V  A + A       L   
Sbjct: 82  IEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLA------ALEAA 135

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
                 +P+V L+      D    S+   +G        L      +P P    +P D A
Sbjct: 136 DPGDLPLPAVWLL------DAP-ASVSVPAGWSTAPLPPL-----DAPAPAAAVQPGDTA 183

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY-------------PSDIYMSYLPL 306
            I YTSGTTG  KG    H              QFY               D+  + LPL
Sbjct: 184 AILYTSGTTGPSKGVCCPHA-------------QFYWWGRNSAEDLEIGADDVLYTTLPL 230

Query: 307 AHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
            H                  F+Q     L     VL+P    S          G   AV+
Sbjct: 231 FHTNALN------------AFFQA---LLAGATYVLEPRFSAS----------GFWPAVR 265

Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
             G     L  A  +     I+  Q   +           +R   RVR       P    
Sbjct: 266 RHGATVTYLLGAMVS-----ILLSQPARE----------SDR-AHRVRVALGPGVP--AA 307

Query: 427 VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS 486
           +    +  FG  +++GYG TET+ +I A+  G    G +G   P  E ++VD        
Sbjct: 308 LHAAFRERFGVDLLDGYGSTETNFVI-AVTHGSQRPGSMGRLAPGFEARVVD-------E 359

Query: 487 EDQPHPR---GEICVRG--PIVF-QGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
            DQ  P    GE+ +R   P  F  GY+    +T E    + W HTGD  +    G  + 
Sbjct: 360 HDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWR-NLWFHTGDRVVRDADGWFRF 418

Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY 577
           +DR K+  +  +GE ++  ++E V      V    ++
Sbjct: 419 VDRIKDAIR-RRGENISSFEVEQVLLSHPAVAAAAVF 454

Length = 542

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 111/509 (21%), Positives = 198/509 (38%), Gaps = 82/509 (16%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TY  +S     + SGL   GL +G R+ +YL  R E +      +    + VP+   L 
Sbjct: 26  LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
            + V +++    +  +    + L+ L   +     +  +++VG         P   G + 
Sbjct: 86  AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
            S+ +L + G     P  P    D+A I YTSG+TG PKG VL+H NL++     +  ++
Sbjct: 143 ASWPKLLALG--DADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLE 200

Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRL 353
             P D  ++ LPL+  Y   NQ+ +        FY G  + L D L          +PR 
Sbjct: 201 NRPDDRLLAVLPLSFDYGF-NQLTT-------AFYVGATVVLHDYL----------LPR- 241

Query: 354 YNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRV 413
                  +  A++     +  +   A             P  +W +L      E     +
Sbjct: 242 ------DVLKALE-----KHGITGLA----------AVPP--LWAQLAQLDWPESAAPSL 278

Query: 414 RFMGSGASPLSPDVMDFLKVCFG-CQVMEGYGMTE----TSCIISAIDKGDNLSGHVGSP 468
           R++ +    +    +  L+      ++   YG+TE    T      +D+       +G  
Sbjct: 279 RYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRR---PDSIGKA 335

Query: 469 NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQT----REVIDGDGWL 524
            P  E+ ++        SE  P   GE+  RG +V  GY+ +  +T    R +    G L
Sbjct: 336 IPNAEVLVLR----EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGEL 391

Query: 525 HTGDIGLWLPG--------GRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
           H  ++ +W  G        G L  + R+  + K + G  V+P ++E V      V +   
Sbjct: 392 HLPELAVW-SGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPTEVEEVAYATGLVAEAVA 449

Query: 577 YG---DSFNSCLVAIV------AVDPDVL 596
           +G    +    +V +V       +D   L
Sbjct: 450 FGVPDPTLGQAIVLVVTPPGGEELDRAAL 478

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 98.1 bits (244), Expect = 2e-21
 Identities = 95/507 (18%), Positives = 158/507 (31%), Gaps = 99/507 (19%)

Query: 70  DRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSG 129
                 P   T+H  F       PD   L         V G + +TY E+ A    +   
Sbjct: 218 ALAAPIPLRLTIHLLFEEQAATTPDAVAL---------VRGGQQLTYAELDARANRLARL 268

Query: 130 LLFHGLQKGVRIGLYLINRPEWLI----VDHACSAYSYISVPLYDTLGPDAVKYVVNHAE 185
           L+  G+  G  + +      E ++    V  A +AY    VPL      + + Y++  + 
Sbjct: 269 LISLGVGPGETVAILADRSLELVVALLAVLKAGAAY----VPLDPLYPAERLAYILEDSR 324

Query: 186 IEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCS 245
              +         L      +P + L   +    +  P   +                  
Sbjct: 325 PTLLLTQAH----LRVDDVGLPGLALDDALSEIPDTDPIPQAL----------------- 363

Query: 246 SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLP 305
                     + +A I YTSG+TG PKG  + H  L + +            D  ++   
Sbjct: 364 --------LGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALAS 415

Query: 306 LAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRI-YAGIT-- 362
           L+          SV + +     +G  L L   L  + P        L   +   GIT  
Sbjct: 416 LSF-------DASV-FEIFGALLEGARLVLAPALLQVDPA------ALLELLEAQGITVL 461

Query: 363 NAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASP 422
             V     L  +L   A      A+           R +        GG        A P
Sbjct: 462 LLV----PLLLRLLLLA------ALAPDLISPCERLRQLL------SGGE-------ALP 498

Query: 423 LSPDVMDFLKVCFGCQVMEGYGMTETSCIISA--IDKGDNLSGHVGSPNPACEIKLVDVP 480
           L+             +++  YG TE +    +  I         +G P    ++ ++D  
Sbjct: 499 LALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-- 556

Query: 481 EMNYTSEDQPHP---RGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGR 537
                   +P P    GE+ + G  +  GY      T E         TGD+   L  G 
Sbjct: 557 -----QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGA 611

Query: 538 LKIIDRKKNIFKLAQGEYVAPEKIENV 564
           L+ + RK +  K+ +G  +   +IE  
Sbjct: 612 LEYLGRKDSQVKI-RGFRIELGEIEAA 637

Length = 642

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 97.2 bits (243), Expect = 4e-21
 Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 13/128 (10%)

Query: 442 GYGMTETSCII--SAIDKGDNLS---GHVGSPNPACEIKLVDVPEMNYTSEDQPH-PRGE 495
            YGMTETS +   +  D  D L      VG   P  E+K+VD PE   T E  P   +GE
Sbjct: 347 AYGMTETSPVSTQTRTD--DPLEKRVTTVGRALPHLEVKIVD-PE---TGETVPRGEQGE 400

Query: 496 ICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY 555
           +C RG  V +GY+ +  +T E ID DGW+HTGD+ +    G + I+ R K++  +  GE 
Sbjct: 401 LCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI-IRGGEN 459

Query: 556 VAPEKIEN 563
           + P +IE 
Sbjct: 460 IYPREIEE 467

Length = 559

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 94.2 bits (234), Expect = 3e-20
 Identities = 106/489 (21%), Positives = 192/489 (39%), Gaps = 79/489 (16%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           ++Y E      +    L   G+ +G  + L + N   +L +  A S    + +P+   L 
Sbjct: 28  ISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLA 87

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
            D V Y++  A  + +    +       F + +      +V+   D    +         
Sbjct: 88  ADEVAYILGDAGAKLLLVDEE-------FDAIVALETPKIVI---DAAAQADSRRLA--- 134

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
                   QG     P     P D+  + YTSGTT  PKG + ++GNL        + + 
Sbjct: 135 --------QGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALG 186

Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRL 353
              S+  +   PL H+   A  +     G+AV  + G  L++  +       +  ++ R 
Sbjct: 187 LTASERLLVVGPLYHV--GAFDLP----GIAV-LWVGGTLRIHREFD--PEAVLAAIER- 236

Query: 354 YNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRV 413
            +R+       V  S                  +++        DR   + +   +GG  
Sbjct: 237 -HRLTCAWMAPVMLS-----------------RVLTVPDR----DRFDLDSLAWCIGG-- 272

Query: 414 RFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS--GHVGSPNPA 471
                G       + DF +V    + ++ YG+TET    + ++ G  +   G  G     
Sbjct: 273 -----GEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAH 327

Query: 472 CEIKLVDVPEMNYTSED----QPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG 527
            EI++ D               P+ +GEIC+RGP V +GY+K+  +T E   GD W  +G
Sbjct: 328 VEIRIAD--------GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGD-WFRSG 378

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSC 584
           D+G     G L + DRKK++  ++ GE +A  ++E V  +   V +  + G   D +   
Sbjct: 379 DVGYLDEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGER 437

Query: 585 LVAIVAVDP 593
           + A+V ++P
Sbjct: 438 ITAVVVLNP 446

Length = 497

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 92.7 bits (231), Expect = 7e-20
 Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 24/207 (11%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +T+ ++      +  GL   GL++G  + L   N  E+  V   C A   I      +  
Sbjct: 11  LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPS----LPSTS 229
           PD + + +  ++ + IFC P  L+ +     E+  V  I+V+    + +      L    
Sbjct: 71  PDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIEDLLEPRL 130

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS 289
           G +              P P      +D A + Y+SGTTG PKG +L+H N+I+N    S
Sbjct: 131 GAEDEFR----------PTPL-IDGKDDTAALLYSSGTTGLPKGVMLSHKNIIAN---LS 176

Query: 290 LMVQFY------PSDIYMSYLPLAHIY 310
            +           +D+ +++LP  H Y
Sbjct: 177 QVQDTLKGNPDSSNDVVLTFLPFYHAY 203

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 91.8 bits (228), Expect = 2e-19
 Identities = 104/455 (22%), Positives = 172/455 (37%), Gaps = 68/455 (14%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           ++YGE+ A  + +G+ L   G+++  R+ L +++  ++ I          + V L   L 
Sbjct: 31  LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
            D   Y++  +    +F   + L  + + + + P +   VVVG         P    V+L
Sbjct: 91  ADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGR--------PEAGEVQL 142

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLI---SNVAGFSL 290
              L  +S+    P        +D A   Y+SG+TG PKG V TH N        A  +L
Sbjct: 143 AELLATESEQ-FKPAATQA---DDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198

Query: 291 MVQFYPSDIYMSYLPLAHIYERANQI---VSVYYGVAVGFYQGDNLKLMDDLAVLKPTIF 347
            ++    D+  S   L   Y   N +   +SV     +   +     + D L   +PTIF
Sbjct: 199 GIR--EDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIF 256

Query: 348 PSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRE 407
             VP L    YA +                                           +  
Sbjct: 257 YGVPTL----YAAMLAD--------------------------------------PNLPA 274

Query: 408 RLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGS 467
               R+R   S    L  +V    +  FG  +++G G TE   I  +   GD   G  G 
Sbjct: 275 EDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGK 334

Query: 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG 527
           P P   ++LV        +  +P   GE+ + GP     Y+ N  +TR+   G  W  +G
Sbjct: 335 PVPGYRLRLVG-DGGQDVAAGEP---GELLISGPSSATMYWNNRAKTRDTFQG-EWTRSG 389

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
           D  +    G      R  ++ K++ G YV+P +IE
Sbjct: 390 DKYVRNDDGSYTYAGRTDDMLKVS-GIYVSPFEIE 423

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 90.0 bits (224), Expect = 6e-19
 Identities = 59/198 (29%), Positives = 90/198 (45%), Gaps = 39/198 (19%)

Query: 419 GASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV------GSPNPA 471
           GASP+SP  + + ++  FG    + YG TE   +I+ + K D+           G P P 
Sbjct: 289 GASPMSPVRLAEAIER-FGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPG 347

Query: 472 CEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGD 528
             + L+D        + +   +   GEICVRGP+V  GY+    +T E    DGWLHTGD
Sbjct: 348 LRVALLD-------EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFR-DGWLHTGD 399

Query: 529 IGLWLPGGRLKIIDRKK--------NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG-- 578
           +      G   I+DRKK        N+F         P ++E+V A+   V Q  + G  
Sbjct: 400 VAREDEDGFYYIVDRKKDMIVTGGFNVF---------PREVEDVLAEHPAVAQVAVIGVP 450

Query: 579 -DSFNSCLVAIVAVDPDV 595
            + +   + A+V + P  
Sbjct: 451 DEKWGEAVTAVVVLRPGA 468

Length = 524

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 89.3 bits (222), Expect = 1e-18
 Identities = 101/396 (25%), Positives = 157/396 (39%), Gaps = 100/396 (25%)

Query: 213 VVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPK 272
           VVVG        +    G+++++   L +     P        +D+A +  TSG+TG+PK
Sbjct: 112 VVVGEPFLAAAPVLEEKGIRVLTVADLLAADPIDPVETGE---DDLALMQLTSGSTGSPK 168

Query: 273 GAVLTHGNLISNVAGFSLMVQFYP-SDIYMSYLPLAH----IYERANQIVSVYYGVAVGF 327
              +THGNL +N     +  +F   +D+ +S+LPL H    +       V +Y+G     
Sbjct: 169 AVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMV---GFLTVPMYFGA---- 221

Query: 328 YQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAI 387
                     +L  + P  F   P L+  +   I+   K  GT+     TAA N    A+
Sbjct: 222 ----------ELVKVTPMDFLRDPLLWAEL---IS---KYRGTM-----TAAPNF-AYAL 259

Query: 388 VS----GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVM-DFLKVC--FGCQ-- 438
           ++     Q     +D    + +R        F  +GA P+ P  + D L     FG +  
Sbjct: 260 LARRLRRQAKPGAFD---LSSLR--------FALNGAEPIDPADVEDLLDAGARFGLRPE 308

Query: 439 -VMEGYGMTETSCIISAIDKGDNL--------------------SGHV------GSPNPA 471
            ++  YGM E +  +S    G  L                     G+       G P P 
Sbjct: 309 AILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPG 368

Query: 472 CEIKLVDVPEMNYTSED---QPHPR--GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHT 526
            E+++VD        ED    P PR  G I +RG  V  GY   +       D DGWL T
Sbjct: 369 LEVRVVD--------EDGQVLP-PRGVGVIELRGESVTPGYLTMD-GFIPAQDADGWLDT 418

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
           GD+G     G + +  R K++  +A G  + P  IE
Sbjct: 419 GDLGYLTEEGEVVVCGRVKDVIIMA-GRNIYPTDIE 453

Length = 545

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 88.3 bits (220), Expect = 2e-18
 Identities = 80/373 (21%), Positives = 138/373 (36%), Gaps = 72/373 (19%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
           P+D+A + YTSG+TG PKG ++ H  L++ +A           D  + +   +       
Sbjct: 92  PDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSF------ 145

Query: 315 QIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREK 374
                                  D +V    IFP        + +G T  +     LR+ 
Sbjct: 146 -----------------------DASVW--EIFPP-------LLSGATLVLAPPEVLRDP 173

Query: 375 LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD-FLKV 433
              A    + +  V    PS +   L+       L   +R +  G   L  +++  + ++
Sbjct: 174 EALAELLREHRITVLHLVPS-LLRALLDALEPAALPS-LRLVIVGGEALPAELVRRWREL 231

Query: 434 CFGCQVMEGYGMTETSCIISA--IDKGDNLSGHV--GSPNPACEIKLVDVPEMNYTSEDQ 489
             G +++  YG TET+  ++   +D  D   G V  G P     + ++D        + +
Sbjct: 232 FPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVLD-------EDLR 284

Query: 490 PHPR---GEICVRGPIVFQGYYKNEVQTRE-------VIDGDGWLHTGDIGLWLPGGRLK 539
           P P    GE+ + G  V +GY      T E          G+    TGD+  WLP G L+
Sbjct: 285 PVPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLE 344

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQC--FIYGDSF-NSCLVA-IVA----- 590
            + R  +  K+  G  +   +IE        V +       D      LVA +V      
Sbjct: 345 FLGRADDQVKIR-GYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAE 403

Query: 591 VDPDVLKDWAASQ 603
           +D   L+ + A +
Sbjct: 404 LDAAELRAFLAER 416

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 89.1 bits (221), Expect = 2e-18
 Identities = 101/466 (21%), Positives = 170/466 (36%), Gaps = 71/466 (15%)

Query: 108 VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVP 167
           + G +  +Y E+      + +GL   G+++G    + L N  E+ IV  A        V 
Sbjct: 43  ICGNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVL 102

Query: 168 LYDTLGPDAVKYVVNHAEIEAIFCIPQ----TLNTLL-SFISEIPSVHLIVVVGGKDEHL 222
              +     +    +  E               +       S++P++  I+V G   E  
Sbjct: 103 ALFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPTLRNIIVAGQTGEA- 161

Query: 223 PSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLI 282
                         L L  +  + P  F P K +++A    + G+TGTPK    TH +  
Sbjct: 162 -------------ELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYY 208

Query: 283 SNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVL 342
            +V     +        Y+  LP AH Y  ++       G    FY G  + L  D +  
Sbjct: 209 YSVRRSVEICWLTQQTRYLCALPAAHNYPLSSP------GALGVFYAGGCVVLAPDPSPT 262

Query: 343 KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVF 402
               FP + R    + A +  AV         L+  A +  +  + S             
Sbjct: 263 --DCFPLIERHKVTVTALVPPAVA--------LWMQAASKSRADLSS------------- 299

Query: 403 NKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS 462
                     ++ +  G +  S      +   FGCQ+ + +GM E     + +D    + 
Sbjct: 300 ----------LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEII 349

Query: 463 GHV-GSP-NPACEIKLVDVPEMNYTSEDQPHPRGE---ICVRGPIVFQGYYKNEVQTREV 517
               G P +P  E+++VD           P   GE   +  RGP  F+GYYK        
Sbjct: 350 FTTQGRPMSPDDEVRVVD-------DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAA 402

Query: 518 IDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
            D +G+ +TGD+    P G + ++ R K+      GE +A E+IEN
Sbjct: 403 FDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRG-GEKIAAEEIEN 447

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 87.4 bits (217), Expect = 4e-18
 Identities = 87/391 (22%), Positives = 147/391 (37%), Gaps = 77/391 (19%)

Query: 244 CSSPQPFCP-PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMS 302
            + P  F   PK +D A I +TSG+TG PKG V TH    + +     +      D  ++
Sbjct: 72  EAEPDAFIGIPKADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLA 131

Query: 303 YLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGIT 362
             P   ++           G A+G            +  + P + P+ P           
Sbjct: 132 AFPPFALF-----------GPALG------------VTTVIPAMDPTAP--------AAL 160

Query: 363 NAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLG---GRVRFMGSG 419
           +  K +  +RE   +  + S          P+ +   +   +  E  G     +R + S 
Sbjct: 161 DPAKLAQAIREIGASCVFGS----------PA-LLKNVA--RYCEENGIQLPSLRRVLSA 207

Query: 420 ASPLSPDVM----DFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH----------- 464
            +P+ PD++      L      ++   YG TE +  +++I+  + L+             
Sbjct: 208 GAPVPPDLLRRFVANLMP--EAEIHTPYGATE-ALPVASIEGREVLAESAEPPEAGAGVC 264

Query: 465 VGSPNPACE---IKLVDVP--EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTR--EV 517
           VG P P  +   I + D P    +   E  P   GEI V GP V + YY     T+  ++
Sbjct: 265 VGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKI 324

Query: 518 IDGDGWLH-TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
            DG+   H  GD+G +   GRL    RK +  + A G  +    +E V+ +   V +  +
Sbjct: 325 SDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGG-TLFTVPVEQVFNRHPGVRRSAL 383

Query: 577 YG--DSFNSCLVAIVAVDPDVLKDWAASQGI 605
            G         V +V   P VL      +G 
Sbjct: 384 VGVGKPGTQAPVLVVEPMPPVLDRRKRLEGR 414

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 87.5 bits (217), Expect = 7e-18
 Identities = 118/450 (26%), Positives = 180/450 (40%), Gaps = 85/450 (18%)

Query: 136 QKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT 195
            +G RIGL L N      V    S    I   +  T G   +   +  AEI+ IF   Q 
Sbjct: 253 VEGERIGLMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQF 312

Query: 196 LNT--LLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPP 253
           L+   L     ++  V  + +   KD+       T+  KL  +  L              
Sbjct: 313 LDKGKLWHLPEQLTQVRWVYLEDLKDD------VTTADKLWIFAHL----LMPRLAQVKQ 362

Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA 313
           +PED A I +TSG+ G PKG V +H +L++NV     +  F P+D +MS LPL H     
Sbjct: 363 QPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHS---- 418

Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPS------VPRL-YNRIYAGITNAVK 366
                  +G+ VG +      L+    V    ++PS      VP L Y+R      N   
Sbjct: 419 -------FGLTVGLFT----PLLTGAEVF---LYPSPLHYRIVPELVYDR------NCTV 458

Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
             GT     F   Y             ++  +   F ++R        ++ +GA  L   
Sbjct: 459 LFGT---STFLGNY-------------ARFANPYDFARLR--------YVVAGAEKLQES 494

Query: 427 VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS 486
                +  FG +++EGYG+TE + ++S         G VG   P  + +L+ VP +    
Sbjct: 495 TKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGI---- 550

Query: 487 EDQPHPRGEICVRGPIVFQGY------YKNEVQTREVIDGD---GWLHTGDIGLWLPGGR 537
                  G + ++GP +  GY         EV T E   G+   GW  TGDI  +   G 
Sbjct: 551 ----EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGF 606

Query: 538 LKIIDRKKNIFKLAQGEYVAPEKIENVYAK 567
           ++I  R K   K+A GE V+ E +E +   
Sbjct: 607 VQIQGRAKRFAKIA-GEMVSLEMVEQLALG 635

Length = 718

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 86.0 bits (214), Expect = 1e-17
 Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 44/230 (19%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T+          YPD + L   V  D    G +W TY E +     +  GLL  G++KG 
Sbjct: 17  TIGQLLDRTAARYPDREAL---VYRDQ---GLRW-TYREFNEEVDALAKGLLALGIEKGD 69

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISV---PLYDTLGPDAVKYVVNHAEIEAIFCIP--- 193
           R+G++  N PEW++   A +    I V   P Y       ++Y +N +  +A+       
Sbjct: 70  RVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL---SELEYALNQSGCKALIAADGFK 126

Query: 194 -----QTLNTLLSFI----------SEIPSVHLIVVVGGKDEHLPSLPSTSGVKL----I 234
                  L  L   +          + +P +  ++ +G  DE  P + +   +      +
Sbjct: 127 DSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLG--DEKHPGMLNFDELLALGRAV 184

Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISN 284
              +L ++  +         P+D   I YTSGTTG PKGA LTH N+++N
Sbjct: 185 DDAELAARQATL-------DPDDPINIQYTSGTTGFPKGATLTHRNILNN 227

Length = 559

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 85.2 bits (211), Expect = 3e-17
 Identities = 108/511 (21%), Positives = 184/511 (36%), Gaps = 139/511 (27%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           T+G++     +  +     G+ KG  + L L  R E+     A      I++P    L  
Sbjct: 49  TFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTA 108

Query: 175 DAVKYVVNHAEIEAIFC-----IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
             + Y +  A I+ I C     +P+ ++       E  S  L+V+VG             
Sbjct: 109 KDIVYRIEAAGIKMIVCIGEDGVPEHIDE---AAPECGSPTLLVLVGDPVPE-------- 157

Query: 230 GVKLISYLQLQSQGCSSPQPFCPP-------KPEDIATICYTSGTTGTPKGAVLTHGNLI 282
               I +     +   +  P             +DI  + +TSGTTG PK  ++ H +  
Sbjct: 158 --GWIDF----DKEIENASPDFERPTGNDATCNDDILLVYFTSGTTGMPK--MVEHDHT- 208

Query: 283 SNVAGFSLMVQFYPSDIYMSYLPLAHI----YERANQIVSVYY----------------- 321
                                 PL HI    Y +  +   ++                  
Sbjct: 209 ---------------------YPLGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGKLYG 247

Query: 322 ----GVAVGFYQGDNL---KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREK 374
               G AV  Y  D      L++ +     T F + P +Y R              ++E 
Sbjct: 248 QWIAGAAVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIY-RFL------------IKED 294

Query: 375 LFTAAYNSKKQAIVSGQ--TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK 432
           L     +S +    +G+   P       VFN  +E+ G                      
Sbjct: 295 LSKYDLSSLRYCTTAGEPLNPE------VFNTFKEKTG---------------------- 326

Query: 433 VCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP 492
                ++MEG+G TET+  I+     +   G +G P+P  +I ++D P+       +   
Sbjct: 327 ----IKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIID-PD---GKSCEVGE 378

Query: 493 RGEICVR----GPI-VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNI 547
            GEI +R     P+ +F GYY++  +T EV   DG+ HTGD       G L  + R  ++
Sbjct: 379 EGEIVIRTSDGKPLGLFMGYYRDPERTAEVWH-DGYYHTGDTAWMDEDGYLWFVGRADDL 437

Query: 548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
            K + G  + P ++E+   +   VL+C + G
Sbjct: 438 IKSS-GYRIGPFEVESALIQHPAVLECAVTG 467

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 83.8 bits (208), Expect = 5e-17
 Identities = 67/300 (22%), Positives = 111/300 (37%), Gaps = 60/300 (20%)

Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA 313
            P+D A + YTSG+TG PKG V+TH N+ + +     ++   P D               
Sbjct: 97  SPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDR-------------- 142

Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
                V    ++ F          D+++L   IF +       + AG T  +       E
Sbjct: 143 -----VLQFASIAF----------DVSIL--EIFTT-------LLAGGTLVIPPEELRLE 178

Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
            L  A + ++ +  V+  TPS      +   +       +R +  G       ++D    
Sbjct: 179 DL--AEFLNRLRVTVAHLTPS------LLALLDPEDVPSLRTLILGGEACPQALVDRWSK 230

Query: 434 CFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
               +++  YG TE +   +A         ++G P P     ++D               
Sbjct: 231 P--RRLLNTYGPTEATVTATASRLTPGKPVNIGRPLPNYTCWVLDPDLEPLVPIGAV--- 285

Query: 494 GEICVRGPIVFQGYYKNEVQTREV-IDGDGWL--------HTGDIGLWLPGGRLKIIDRK 544
           GE+C+ GP V +GY      T E  I    WL         TGD+  +L  G L+ + RK
Sbjct: 286 GELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRK 345

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 83.0 bits (206), Expect = 8e-17
 Identities = 85/389 (21%), Positives = 133/389 (34%), Gaps = 111/389 (28%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMS------------ 302
           P+D+A + YTSG+TG PKG  ++H  L++ +   +       SD  ++            
Sbjct: 92  PDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLAVTTISFDISVLE 151

Query: 303 -YLPL---AHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIY 358
             LPL   A +   + + V             D  +L   +A  + TI            
Sbjct: 152 LLLPLLSGATVVIASAETVR------------DPERLARLIADERITIM----------- 188

Query: 359 AGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFN---KIRERLGGRVRF 415
                                     QA     TP+  W R++     + RE L      
Sbjct: 189 --------------------------QA-----TPA-TW-RMLLAAGWRGRESLT----- 210

Query: 416 MGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV--GSPNPACE 473
              G   L  D+ + L    G ++   YG TET  I S   +     G V  G P    +
Sbjct: 211 ALCGGEALPRDLAERLLST-GAELWNMYGPTET-TIWSTCARVTAADGPVTIGRPIANTQ 268

Query: 474 IKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVI-------DGDGW 523
           + ++D        + QP P    GE+ + G  V +GY      T E          G   
Sbjct: 269 VYVLD-------EDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRL 321

Query: 524 LHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF-- 581
             TGD+  W P GRL+ + R  +  K+ +G  +   +IE        V    +       
Sbjct: 322 YRTGDLVRWRPDGRLEYLGRADDQVKI-RGFRIELGEIEAALRAHPGVADAVVVVREEGP 380

Query: 582 -NSCLVAIV------AVDPDVLKDWAASQ 603
            +  LVA V      A D + L+    + 
Sbjct: 381 GDQRLVAYVVPKAGAAPDAEALRAALRAT 409

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 83.1 bits (206), Expect = 1e-16
 Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 9/200 (4%)

Query: 109 GGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPL 168
           G   W TY E+ AA   + + LL  GL+KG R+     N   + ++  AC+    + VP+
Sbjct: 33  GDRSW-TYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPV 91

Query: 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPST 228
              L  + + Y+++H+   A    P    T  + ++ +P   LI+        +      
Sbjct: 92  NFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLIL------SLVLGGREA 145

Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
            G   + +      G S  +P      +D+A I YTSGT   PKGA+LTH  LI+     
Sbjct: 146 PG-GWLDFADWAEAG-SVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSC 203

Query: 289 SLMVQFYPSDIYMSYLPLAH 308
            +       DI +  LPL H
Sbjct: 204 IVAGDMSADDIPLHALPLYH 223

Length = 523

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 82.4 bits (204), Expect = 1e-16
 Identities = 67/329 (20%), Positives = 127/329 (38%), Gaps = 51/329 (15%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
            +D A + +TSGTTG PK  + TH   + ++   +  +   P D+               
Sbjct: 80  ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDL--------------- 124

Query: 315 QIVSVYYGVA-VGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
                ++ +A  G+ +G    L     +          R          +A +    L  
Sbjct: 125 -----HWTIADPGWAKGAWSSLFAPWLLGAAVFVYHGRRF---------DAERTLELL-- 168

Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
                    ++  + +   P   +  L+   +       +R + S   PL+P+V+D+ + 
Sbjct: 169 ---------ERYGVTTFCAPPTAYRMLLQQDLSSYDFSHLRHVVSAGEPLNPEVIDWWRA 219

Query: 434 CFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
             G  + +GYG TET  +++     +   G +G P P   + ++D  E N     +    
Sbjct: 220 ATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGYRVAIID-DEGNELPPGEE--- 275

Query: 494 GEICV----RGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK 549
           G+I V    R P +F+GY K+  +T   I    W  TGD  +    G    + R  ++ K
Sbjct: 276 GDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTGDRAIKDEDGYFWFVGRADDVIK 334

Query: 550 LAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
            + G  + P ++E+   +   V +  + G
Sbjct: 335 -SSGYRIGPFEVESALIEHPAVAEAAVVG 362

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 83.4 bits (207), Expect = 2e-16
 Identities = 58/166 (34%), Positives = 80/166 (48%), Gaps = 23/166 (13%)

Query: 413  VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIIS-----AIDKGD-----NLS 462
            +R + +GA  L P+V D  +  FG +++EGYG TETS + S      +         +  
Sbjct: 900  LRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKE 959

Query: 463  GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGE---ICVRGPIVFQGYYKNEVQTREVI- 518
            G VG P P   +++VD PE  +    +  P GE   I + GP V +GY  +  +T EVI 
Sbjct: 960  GSVGMPLPGVAVRIVD-PE-TF----EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIK 1013

Query: 519  --DGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
              DG GW  TGD G     G L I DR     K+  GE V    +E
Sbjct: 1014 DIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVE 1058

Length = 1146

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 81.4 bits (201), Expect = 3e-16
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 15/171 (8%)

Query: 413 VRFMGSGASPLSPDVMDFLK---VCFGCQVMEGYGMTETSCIISAIDKGD--NLSGHVGS 467
           VR+  +G +P   ++M         FG    +G+GMTETS  +  + + D     G +G 
Sbjct: 266 VRWFYNGGAPCPEELMREFIDRGFLFG----QGFGMTETSPTVFMLSEEDARRKVGSIGK 321

Query: 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG 527
           P   C+ +L+D       ++ +    GE+ +RGP V + Y+     T E I  DGWL TG
Sbjct: 322 PVLFCDYELID----ENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQ-DGWLCTG 376

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
           D+      G + I+ RKK +  ++ GE + P ++E V  K   V +  + G
Sbjct: 377 DLARVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEVAVVG 426

Length = 496

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 80.5 bits (199), Expect = 9e-16
 Identities = 108/513 (21%), Positives = 183/513 (35%), Gaps = 134/513 (26%)

Query: 93  PDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWL 152
           PD  +L  R   +   G ++ +TYGE   A   +   LL  GL  G  + +   N  E  
Sbjct: 63  PDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIE-- 117

Query: 153 IVDHACSAYSYISV--------PLYDTLGPD--AVKYVVNHAEIEAIFCIPQTLNTLLSF 202
              HA    + +          P Y  +  D   +K++ +  +   +F       +   F
Sbjct: 118 ---HALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVF-----AQSGAPF 169

Query: 203 ISEIPSVHL----IVVVGGKDEHLPSL--------PSTSGVKLISYLQLQSQGCSSPQPF 250
              + ++ L    +V V G  E + S+        P T+ V   +   +           
Sbjct: 170 ARALAALDLLDVTVVHVTGPGEGIASIAFADLAATPPTAAVAA-AIAAIT---------- 218

Query: 251 CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSD---IYMSYLPLA 307
               P+ +A   +TSG+TG PK  + T   + +N+A    +    P     + + ++P  
Sbjct: 219 ----PDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWN 274

Query: 308 HIYERANQIVSVYYGVAVGF----YQGDNLKLMD-------------DLAVLKPTIFPSV 350
           H             G    F    + G  L + D             +L  + PT++ +V
Sbjct: 275 HTM-----------GGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNV 323

Query: 351 PRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS--GQT-PSKMWDRLVFNKIRE 407
           P      YA +  A++    LR   F      K   +++  G T    +++R+    +R 
Sbjct: 324 PA----GYAMLAEAMEKDDALRRSFF------KNLRLMAYGGATLSDDLYERMQALAVRT 373

Query: 408 RLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGS 467
             G R+ F                          GYG TET+   +         G +G 
Sbjct: 374 -TGHRIPFY------------------------TGYGATETAPTTTGTHWDTERVGLIGL 408

Query: 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG 527
           P P  E+KL  V +           + E+ V+GP V  GY+K+   T    D +G+   G
Sbjct: 409 PLPGVELKLAPVGD-----------KYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLG 457

Query: 528 DIGLWL----PGGRLKIIDRKKNIFKLAQGEYV 556
           D   ++    P   L    R    FKL+ G +V
Sbjct: 458 DAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWV 490

Length = 624

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 80.3 bits (199), Expect = 1e-15
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 26/199 (13%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TY E+    + I + L   G   G R+ L      +++     C     I+VP      
Sbjct: 24  LTYAELDRRARAIAARLQALGAP-GDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRR 82

Query: 174 P----DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
                  +  ++  A   A+      L  L + ++   ++ L+++          L + +
Sbjct: 83  LGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIA------ADDLAALA 136

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS 289
                          +  +P  PP P+DIA + YTSG+TG PKG ++THGNL++N+   +
Sbjct: 137 A--------------ADWRP-PPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIA 181

Query: 290 LMVQFYPSDIYMSYLPLAH 308
                 P D+ +S+LPL H
Sbjct: 182 RAFGLDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 78.8 bits (195), Expect = 2e-15
 Identities = 51/138 (36%), Positives = 69/138 (50%), Gaps = 26/138 (18%)

Query: 442 GYGMTE---TSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICV 498
           GYG+TE   T C   A    D L+G VGSP P  E+KLVD               GEI +
Sbjct: 270 GYGLTEMASTVCAKRA----DGLAG-VGSPLPGREVKLVD---------------GEIWL 309

Query: 499 RGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAP 558
           RG  +  GY++   Q   +++ +GW  T D G W   G L I+ R  N+F  + GE + P
Sbjct: 310 RGASLALGYWRQG-QLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQP 366

Query: 559 EKIENVYAKCKFVLQCFI 576
           E+IE V  +   V Q F+
Sbjct: 367 EEIERVINQHPLVQQVFV 384

Length = 458

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 78.3 bits (193), Expect = 3e-15
 Identities = 70/322 (21%), Positives = 121/322 (37%), Gaps = 62/322 (19%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
            +D+    YTSGTTG PKG  +    L +          FY    YM Y     I  R +
Sbjct: 87  DDDLFAQMYTSGTTGLPKGVPVPLNALAA----------FYA---YMRY----AIDLRDD 129

Query: 315 QIVSVYYGVA-VGFYQGDNLKLMDDLAVLKPTIF----PSVPRLYNRIYA-GITNAVKAS 368
               V++ +A  G+  G    +   LA+   T+F     +    Y+ +   G+TN   + 
Sbjct: 130 ---DVFWNIADPGWAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSP 186

Query: 369 GTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVM 428
              R              +++                  R+  ++R   S   PL+P+V+
Sbjct: 187 TAYR-------------MLMAAGAD-----------AAARIKLKLRVASSAGEPLNPEVV 222

Query: 429 DFLKVCFGCQVMEGYGMTETSCII--SAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS 486
            + +   G  + + YG TET   +        +  +G +G P P   I ++D  +     
Sbjct: 223 RWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLD-DDGQ--- 278

Query: 487 EDQPHPRGEICVR----GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID 542
                  G++ +       + F GY+ +  +T E+I G  W  TGD+      G    I 
Sbjct: 279 PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAG-RWYVTGDLVERDEDGYFWFIG 337

Query: 543 RKKNIFKLAQGEYVAPEKIENV 564
           R  ++   A G  + P  +E+ 
Sbjct: 338 RADDVIISA-GYRIGPFDVESA 358

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 78.1 bits (193), Expect = 5e-15
 Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 24/233 (10%)

Query: 79  GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKG 138
            TL +    A E+ P      T +  DG     ++ +Y E+    + I +GL   GL+ G
Sbjct: 10  RTLEEALQRAAEHAPGRG--ITYIDADG---SEEFQSYAELLEEAERILAGLRALGLKPG 64

Query: 139 VRIGLYLINRPEWLIVDH-ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN 197
             + +  + R E  +    AC    ++ VP+   + P    Y   +A +  +  I + L 
Sbjct: 65  DSV-ILQLERNEDFVTAFWACVLGGFVPVPV--AVPPT---YDEPNAAVAKLRNIWELLG 118

Query: 198 TLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQS-QGCSSPQPFCPPKPE 256
           + +  +++   V            L  L + +G++ +  L ++  +      P  P +P+
Sbjct: 119 SPV-ILTDAALV----------AALAGLRTRAGLEALRVLAIEELRSAPPDAPLHPARPD 167

Query: 257 DIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI 309
           D A +  TSG+TG PK  VLTH N+++  AG   +  F P D+ ++++PL H+
Sbjct: 168 DPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVSLNWMPLDHV 220

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 77.9 bits (192), Expect = 5e-15
 Identities = 103/443 (23%), Positives = 174/443 (39%), Gaps = 76/443 (17%)

Query: 134 GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIP 193
           GLQ+G R+ + L   PEW +V+ AC     + +P    L    + Y +  ++ + I    
Sbjct: 63  GLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYRLQASKAKCIVTSD 122

Query: 194 QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQS--QGCSSPQPFC 251
           +    + S  SE PS+   ++V        S  S  G     +L  +   +  S+     
Sbjct: 123 ELAPAVDSIASECPSLKTKLLV--------SEHSRDG-----WLNFKELLKEASTEHTCV 169

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNL-ISNVAGFSLMVQFYPSDIYMSYLPLAHIY 310
             K ++   I +TSGTTG PK A  +H +L +         +   PSDI  +      I 
Sbjct: 170 KTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIK 229

Query: 311 ERANQIVSVYYGVAVGFY----QGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
                + S +   A  F     + D   ++  L+    T F S P +Y  +         
Sbjct: 230 AAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLV-------- 281

Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
                            +Q + S +  S                  +R   +G  PL+P+
Sbjct: 282 -----------------QQDLTSYKFKS------------------LRHCVTGGEPLNPE 306

Query: 427 VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNL-SGHVGSPNPACEIKLVDVPEMNYT 485
           V++  K   G  + EGYG TET  +I A  KG  +  G +G  +P  +++++D    N  
Sbjct: 307 VLEQWKAQTGLDLYEGYGQTETG-LICANFKGMKIKPGSMGKASPPYDVQIIDD-NGNVL 364

Query: 486 SEDQPHPRGEICVR-GPI----VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
               P   G+I +R  P     +F  Y  N  +T   I GD ++ TGD G+    G    
Sbjct: 365 P---PGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGIMDEDGYFWF 420

Query: 541 IDRKKNIFKLAQGEYVAPEKIEN 563
           + R  ++   + G  + P ++E+
Sbjct: 421 VGRADDVI-NSSGYRIGPFEVES 442

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 77.4 bits (191), Expect = 9e-15
 Identities = 49/136 (36%), Positives = 65/136 (47%), Gaps = 15/136 (11%)

Query: 436 GCQVMEG-YGMTET-SC--IISAIDKGD-NLSGH---VGSPNPACEIKLVDVPEMNYTSE 487
           G  + E  +GMTET +C    +     D +L      VG P P  E K+ D      T E
Sbjct: 352 GSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFE----TGE 407

Query: 488 DQP-HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
             P    GEI VR P + +GY+     T E +  DGWLHTGDIG     G L  + R+K 
Sbjct: 408 LLPLGAEGEIVVRTPSLLKGYWNKPEATAEALR-DGWLHTGDIGKIDEQGFLHYLGRRKE 466

Query: 547 IFKLAQGEYVAPEKIE 562
           + K+  G  V P ++E
Sbjct: 467 MLKV-NGMSVFPSEVE 481

Length = 567

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 76.6 bits (189), Expect = 1e-14
 Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 23/143 (16%)

Query: 435 FGCQVMEGYGMTETSCIISAIDKGDNLSGH-----VGSPNPACEIKLVDVPEMNYTSEDQ 489
           FG +++  YGMTET  I+  I  GD          +G P    E ++ D         ++
Sbjct: 311 FGVRLLTSYGMTET--IVGII--GDRPGDKRRWPSIGRPGFCYEAEIRDD-------HNR 359

Query: 490 PHPR---GEICVRG---PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR 543
           P P    GEIC++G     +F+ YY +   T +V++ DGWLHTGD G     G    +DR
Sbjct: 360 PLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDR 419

Query: 544 KKNIFKLAQGEYVAPEKIENVYA 566
           + N+ K   GE V+  ++EN+ A
Sbjct: 420 RCNMIKRG-GENVSCVELENIIA 441

Length = 517

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 76.1 bits (187), Expect = 2e-14
 Identities = 47/203 (23%), Positives = 78/203 (38%), Gaps = 23/203 (11%)

Query: 108 VGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDHACSAYSYISV 166
           +   + MTY ++     ++ + L++   ++KG RI +   N  E++++  A +    I+V
Sbjct: 22  ITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81

Query: 167 PLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLP 226
           PL   L  + + + +  +    +F      N  LS         +I +            
Sbjct: 82  PLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITS---------- 131

Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA 286
                       L+         F          ICYTSGTTG PKGAVLT  N+  N  
Sbjct: 132 ------------LKEIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNAL 179

Query: 287 GFSLMVQFYPSDIYMSYLPLAHI 309
             +  +     D  +  LPL HI
Sbjct: 180 NNTFAIDLTMHDRSIVLLPLFHI 202

Length = 496

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 75.3 bits (186), Expect = 3e-14
 Identities = 55/201 (27%), Positives = 73/201 (36%), Gaps = 60/201 (29%)

Query: 411 GRVRFMGSGASPLSPDVMD-----FLKVCFGCQVME-GYGMTETSCIISA---------- 454
              R   +GA P+  D ++     F    F  +     YG+ E +  +S           
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAERFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVVL 329

Query: 455 -IDKGDNLSGHV----------------GSPNPACEIKLVDVPEMNYTSEDQPHPR-GEI 496
            +D+     G                  G P P  E+++VD PE   T    P    GEI
Sbjct: 330 RVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVD-PE---TRRPLPDGEVGEI 385

Query: 497 CVRGPIVFQGYYKNEVQTREV------IDGDGWLHTGDIGLWLPG-----GRLK--IIDR 543
            VRGP V  GY+     T E        D  GWL TGD+G    G     GRLK  II R
Sbjct: 386 WVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLHDGELYVTGRLKDLIIIR 445

Query: 544 KKNIFKLAQGEYVAPEKIENV 564
            +N +         P+ IE  
Sbjct: 446 GRNHY---------PQDIEAT 457

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 75.4 bits (186), Expect = 3e-14
 Identities = 51/159 (32%), Positives = 71/159 (44%), Gaps = 26/159 (16%)

Query: 406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTET---SCIISAIDKGDNLS 462
           R  +   V  M +GA+P    V+  ++   G  +   YG+TET   + + +   + D L 
Sbjct: 292 RAGIDHPVHAMVAGAAP-PAAVIAKMEE-IGFDLTHVYGLTETYGPATVCAWQPEWDALP 349

Query: 463 --------GHVGSPNPACE-IKLVDVPEMNYTSEDQPHPR-----GEICVRGPIVFQGYY 508
                      G   P  E + ++D   M      QP P      GEI  RG IV +GY 
Sbjct: 350 LDERAQLKARQGVRYPLQEGVTVLDPDTM------QPVPADGETIGEIMFRGNIVMKGYL 403

Query: 509 KNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNI 547
           KN   T E   G GW HTGD+ +  P G +KI DR K+I
Sbjct: 404 KNPKATEEAFAG-GWFHTGDLAVLHPDGYIKIKDRSKDI 441

Length = 545

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 74.2 bits (183), Expect = 8e-14
 Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 53/191 (27%)

Query: 402 FNKIRERLG---------GRVRFMGSGASPLSPDV-MDFLKVC--FGC--QVME-GYGMT 446
           F  + + L            +R++ +    +       FL++   +G     +   +GM+
Sbjct: 271 FALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMS 330

Query: 447 ET-SCIISA--IDKGDNLSGH------------------------VGSPNPACEIKLVDV 479
           ET S +  +     G +  G                         +G P P   I++VD 
Sbjct: 331 ETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD- 389

Query: 480 PEMNYTSEDQPHPRGEIC---VRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGG 536
                  +    P GE+    VRGP V  GYY+N     E    DGW  TGD+G +L  G
Sbjct: 390 ------EDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLG-FLHDG 442

Query: 537 RLKIIDRKKNI 547
           RL I  R+K++
Sbjct: 443 RLTITGREKDM 453

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 73.7 bits (181), Expect = 1e-13
 Identities = 94/385 (24%), Positives = 147/385 (38%), Gaps = 87/385 (22%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNV-AGFSLMVQFYP--SDIYMSYLPLAHIYE 311
           PED+A I +TSGT   PKG  LTH NL++N  A       F P   D+ MS+LP  H Y 
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKF---FSPKEDDVMMSFLPPFHAYG 238

Query: 312 -RANQIVSVYYGVAVGF-----YQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
             +  +  +  GV V F     Y    ++++D+    K T   S P  ++ I   +  A 
Sbjct: 239 FNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDE---AKVTFLGSTPVFFDYI---LKTAK 292

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVF-NKIRERLGGRVRFMGSGASPLS 424
           K    L          S +  ++ G           F + + +            A    
Sbjct: 293 KQESCL---------PSLRFVVIGGD---------AFKDSLYQ-----------EALKTF 323

Query: 425 PDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGSPNPACEIKLVDVPEMN 483
           P +          Q+ +GYG TE S +I+            VG P    ++ +V      
Sbjct: 324 PHI----------QLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIV------ 367

Query: 484 YTSEDQ--PHPRGE---ICVRGPIVFQGYYKNEVQTREV-IDGDGWLHTGDIGLWLPGGR 537
             SE+   P   GE   +  RG  +F GY   +     V + G+ W  TGD+G     G 
Sbjct: 368 --SEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGE 425

Query: 538 LKIIDRKKNIFKLAQGEYVAPEKIENVYAK---------CKFVLQCFIYGDSFNSCLVAI 588
           L +  R     K+   E V+ E +E++  +            ++ C + G+    CL   
Sbjct: 426 LFLKGRLSRFVKIG-AEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTT 484

Query: 589 VAVD----PDVLKDWAASQGIKVIY 609
                    D+LK+   S  +K+ Y
Sbjct: 485 FPTSISEVNDILKNSKTSSILKISY 509

Length = 539

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 72.5 bits (178), Expect = 3e-13
 Identities = 86/491 (17%), Positives = 159/491 (32%), Gaps = 91/491 (18%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           ++  E+ A    + + L   G+++G R+ ++L N  EW+++  AC+      +       
Sbjct: 36  LSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVI------- 88

Query: 174 PDAVKYVVNHAEIEAIFCIPQT-------------LNTLLSFI--SEIPSVHLIVVVGGK 218
             AV       E+  I    +                 +L+ +    +P +  I VV   
Sbjct: 89  --AVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDA 146

Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYT-SGTTGTPK----- 272
            +  P+    + V+L +                     D   + +T SGTT  PK     
Sbjct: 147 ADATPAPAPGARVQLFA----LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHR 202

Query: 273 -GAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGD 331
              +L H   I+   G+       P  + ++ LP   ++         +  +      G 
Sbjct: 203 QATLLRHARAIARAYGYD------PGAVLLAALPFCGVFG--------FSTLLGALAGGA 248

Query: 332 NLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ 391
            L            +F +           +T+    +  +  ++          A     
Sbjct: 249 PLVCEP--------VFDAARTARALRRHRVTHTF-GNDEMLRRIL-------DTAGERAD 292

Query: 392 TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCI 451
            PS             RL G   F       L+           G      YG +E   +
Sbjct: 293 FPSA------------RLFGFASFAP-ALGELAALARARGVPLTGL-----YGSSEVQAL 334

Query: 452 ISAIDKGDNLSGHV---GSP-NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGY 507
           ++     D +S  +   G P +P   ++  D  +     + +    GEI +R P + +GY
Sbjct: 335 VALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGES---GEIEIRAPSLMRGY 391

Query: 508 YKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAK 567
             N   T   +  DG+  TGD+G     G+     R  +  +L  G  V P +IE+    
Sbjct: 392 LDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLG-GFLVNPAEIEHALEA 450

Query: 568 CKFVLQCFIYG 578
              V    + G
Sbjct: 451 LPGVAAAQVVG 461

Length = 540

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 71.9 bits (177), Expect = 4e-13
 Identities = 124/535 (23%), Positives = 208/535 (38%), Gaps = 99/535 (18%)

Query: 86  IYAVENYPDYKYLGTRVRV---DGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIG 142
            +A    PD      R  +    GT      +TY E+      +  GLL  G++ G  + 
Sbjct: 56  AHAARRAPD------RAALIDERGT------LTYAELDEQSNALARGLLALGVRAGDGVA 103

Query: 143 LYLINRPEWLIVDHACSAYSYISVPLYDT-LGPDAVKYVVNHAEIEAIFCIPQTLNTLLS 201
           +   N     ++    +      + L +T      +  V     ++A+         LLS
Sbjct: 104 VLARNH-RGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALV-YDDEFTDLLS 161

Query: 202 FI-SEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIAT 260
            +  ++  +         DE     PS S  + +    L +   ++P P  PPKP  I  
Sbjct: 162 ALPPDLGRLRAWGGNPDDDE-----PSGSTDETLD--DLIAGSSTAPLP-KPPKPGGI-- 211

Query: 261 ICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVY 320
           +  TSGTTGTPKGA     + ++ +AG    V F   +  +   P+ H    A+  +++ 
Sbjct: 212 VILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMA 271

Query: 321 YGVAVGFYQG-DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA 379
            G  V   +  D    ++D+A  K T    VP + +RI       +     +  K  T+ 
Sbjct: 272 LGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRI-------LDLGPEVLAKYDTS- 323

Query: 380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQV 439
             S K   VSG                              S LSP++       FG  +
Sbjct: 324 --SLKIIFVSG------------------------------SALSPELATRALEAFGPVL 351

Query: 440 MEGYGMTETSCIISAIDKGDNLS---GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGE- 495
              YG TE +   + I   ++L+   G VG P     +K++D             PRG  
Sbjct: 352 YNLYGSTEVA--FATIATPEDLAEAPGTVGRPPKGVTVKILD-------ENGNEVPRGVV 402

Query: 496 --ICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG 553
             I V     F+GY   + + +++I  DG L +GD+G +   G L +  R  ++  ++ G
Sbjct: 403 GRIFVGNGFPFEGY--TDGRDKQII--DGLLSSGDVGYFDEDGLLFVDGRDDDMI-VSGG 457

Query: 554 EYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIV------AVDPDVLKDW 599
           E V P ++E++ A    V++  + G   + F   L A V      A+D D +KD+
Sbjct: 458 ENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDY 512

Length = 549

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 69.8 bits (172), Expect = 7e-13
 Identities = 26/54 (48%), Positives = 32/54 (59%)

Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI 309
           +D A I YTSGTTG PKG +LTH NL++N       V   P D+Y+   PL H 
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHA 54

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 70.8 bits (173), Expect = 1e-12
 Identities = 99/442 (22%), Positives = 172/442 (38%), Gaps = 99/442 (22%)

Query: 167 PLYDTLGPDAVKYVVNHAEIEAIFC------IPQTLNTLLSFISEIPSVHLIVVVGGKDE 220
           P+   L   ++  ++ HA+ + +F       + + +  LLS      ++ +I +      
Sbjct: 93  PINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFI------ 146

Query: 221 HLPSLPSTSGVKLISYLQLQSQGCSSP----QPFCPPKPEDIATICYTSGTTGTPKGAVL 276
           H    P     + + Y  L  +G  +P    + F      D  ++ YTSGTT  PKG V+
Sbjct: 147 HEIDFPKRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVI 206

Query: 277 THG----NLISNVAGFSLMVQFYPSDIYMSYLPLAH---------IYERANQIVSVYYGV 323
           +H     + +S + G+ +     P  +Y+  LP+ H            R    V + +  
Sbjct: 207 SHRGAYLSTLSAIIGWEMGT--CP--VYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVT 262

Query: 324 AVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSK 383
           A   Y+  N+++ +       T    VP ++N +  G              L  +  +  
Sbjct: 263 APEIYK--NIEMHN------VTHMCCVPTVFNILLKG------------NSLDLSPRSGP 302

Query: 384 KQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGY 443
              +  G  P          K  +RLG                           QVM  Y
Sbjct: 303 VHVLTGGSPPPA-----ALVKKVQRLG--------------------------FQVMHAY 331

Query: 444 GMTETSCII---SAIDKGDNLSGH----VGSPNPACEIKLVDVPEMNYTSEDQPHPR--- 493
           G+TE +  +      D+ + L  +    + +      + L DV   N     +  PR   
Sbjct: 332 GLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKN-KETQESVPRDGK 390

Query: 494 --GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA 551
             GEI ++G  + +GY KN   T E     GWL+TGD+G+  P G ++I DR K+I  ++
Sbjct: 391 TMGEIVIKGSSIMKGYLKNPKATSEAFK-HGWLNTGDVGVIHPDGHVEIKDRSKDII-IS 448

Query: 552 QGEYVAPEKIENVYAKCKFVLQ 573
            GE ++  ++ENV  K   VL+
Sbjct: 449 GGENISSVEVENVLYKYPKVLE 470

Length = 579

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 69.6 bits (171), Expect = 2e-12
 Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 31/192 (16%)

Query: 414 RFMGSGASPLSPDVM---DFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNP 470
           RF+  G + +SP ++     L    G  V EGYG++E + ++S    G +  G VG P P
Sbjct: 240 RFVAVGGARVSPSLLQRARAL----GLPVYEGYGLSECASVVSLNTPGADRPGSVGKPLP 295

Query: 471 ACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIG 530
             ++ +         + D     GEI VRG  +  GY      T      D W  TGD+G
Sbjct: 296 HVQVSI---------AND-----GEILVRGS-LMLGYLGEPPAT------DDWWATGDLG 334

Query: 531 LWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS--FNSCLVAI 588
                G L I  RKKN+   + G  V+PE +E+   +   + Q  ++GD+  F   L+  
Sbjct: 335 HLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVVFGDAQPFLVALIVP 394

Query: 589 VA-VDPDVLKDW 599
              +  D L+  
Sbjct: 395 APNISDDQLEAA 406

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 69.3 bits (170), Expect = 3e-12
 Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 16/224 (7%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY E+        + L   G+  G R+ ++L N P++ IV         + VP+      
Sbjct: 60  TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119

Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLP------ST 228
             + Y +N A  E +  + Q    +    +E    H+IV      + LP+ P      S 
Sbjct: 120 HELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVT--SLADVLPAEPTLPLPDSL 177

Query: 229 SGVKL-----ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS 283
              +L     I  L    + C++P P  PP  + +A + YT GTTG PKG   T  +++ 
Sbjct: 178 RAPRLAAAGAIDLLPAL-RACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVY 236

Query: 284 NVAGFSLM-VQFYPSDIYMSYLPLAHIY-ERANQIVSVYYGVAV 325
             A    + V      +++S+LP   I  E    +  ++ G  +
Sbjct: 237 TAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATL 280

Length = 567

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 69.1 bits (170), Expect = 3e-12
 Identities = 48/213 (22%), Positives = 79/213 (37%), Gaps = 43/213 (20%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
            + D F    +  PD        RV   V G + +TY E+      +   L+  GL  G 
Sbjct: 4   NIADLFEAVADAVPD--------RV-ALVCGDRRLTYAELEERANRLAHYLIAQGLGPGD 54

Query: 140 RIGLYLINRPEWLIVDHACSA---------YSYISVPLYDTLGPDAVKYVVNHAEIEAIF 190
            +G+Y  NR E++                 Y Y+          D ++Y+++ ++  A+ 
Sbjct: 55  HVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV---------EDELRYLLDDSDAVALV 105

Query: 191 ---CIPQTLNTLLSFISEIPSVHLIVVVG-GKDEHLPSLPSTSGVKLISYLQLQSQGCSS 246
                   +  +L     +P +  +VVV  G    L        V    Y    + G S 
Sbjct: 106 YEREFAPRVAEVL---PRLPKLRTLVVVEDGSGNDLLP----GAV---DYEDALAAG-SP 154

Query: 247 PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHG 279
            + F    P+D+  + YT GTTG PKG +    
Sbjct: 155 ERDFGERSPDDLYLL-YTGGTTGMPKGVMWRQE 186

Length = 533

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 67.8 bits (166), Expect = 8e-12
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 15/184 (8%)

Query: 131 LFH--GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEA 188
           LF+  G++KG ++ L+L N PE++      +    I VP+   L  +   +++ +++   
Sbjct: 53  LFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASL 112

Query: 189 IFCIPQTLNTLLSFISEIP-SVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSP 247
           +    Q          E    +  I +         +LP+  GV   S+ QL++Q  ++ 
Sbjct: 113 LVTSAQFYPMYRQIQQEDATPLRHICLTR------VALPADDGV--SSFTQLKAQQPATL 164

Query: 248 QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF--SLMVQFYPSDIYMSYLP 305
               P   +D A I +TSGTT  PKG V+TH NL    AG+  +        D+Y++ +P
Sbjct: 165 CYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLR--FAGYYSAWQCALRDDDVYLTVMP 222

Query: 306 LAHI 309
             HI
Sbjct: 223 AFHI 226

Length = 517

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 67.4 bits (165), Expect = 1e-11
 Identities = 58/198 (29%), Positives = 90/198 (45%), Gaps = 17/198 (8%)

Query: 414 RFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS--GHVGSPNPA 471
           R +   A+P   DV   +   +G  + E YG TE+  +  A    D LS  G VG   P 
Sbjct: 274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFA-TSEDALSHPGTVGKAAPG 332

Query: 472 CEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGD 528
            E++ VD        + +P P+   GEI  R        Y N+ + R  ID  G++ +GD
Sbjct: 333 AELRFVD-------EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGD 385

Query: 529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG--DS-FNSCL 585
           +G     G L + DRK+++  ++ G  + P +IE V      V  C ++G  D+ F   L
Sbjct: 386 VGYLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEAL 444

Query: 586 VAIVAVDPDVLKDWAASQ 603
           +A+V   P    D A  +
Sbjct: 445 MAVVEPQPGATLDEADIR 462

Length = 509

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 67.0 bits (164), Expect = 1e-11
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 18/179 (10%)

Query: 393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCII 452
           P  +W   +   +  +   R+R   S   PL+P+V++ +K  +G  + +GYG TET+ +I
Sbjct: 182 PPTVWRMFIQQDL-AQYDVRLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMI 240

Query: 453 SAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP--RGEICVR---GPI-VFQG 506
                     G +G P P   + L+D        E +  P   GEI +     PI +  G
Sbjct: 241 GNSPGQKVKPGSMGRPLPGYRVVLLD-------DEGKEIPVTEGEIALDLGDRPIGLMLG 293

Query: 507 YYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY-VAPEKIENV 564
           Y  +  +T     G G+  TGD       G L  + R  ++FK    +Y ++P ++E+ 
Sbjct: 294 YMGDPEKTAAAFRG-GYYRTGDKAYRDEDGYLWFVGRADDVFK--SSDYRISPFEVESA 349

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 66.1 bits (162), Expect = 2e-11
 Identities = 44/183 (24%), Positives = 67/183 (36%), Gaps = 37/183 (20%)

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
           RI L L N  +W+I D AC     + +P+         ++++N A  + +        + 
Sbjct: 26  RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLLISDDPDAASA 85

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
           L          L + +          PS + V+L                     P   A
Sbjct: 86  LHTPFATLGEDLYIAL---------RPSANPVEL---------------------PAGTA 115

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDI--YMSYLPLAHIYERANQIV 317
            I YTSG+TG PKG  L+    +  VA  SL       +   ++  LPLA + E    I 
Sbjct: 116 KITYTSGSTGQPKGVCLSAAA-LETVAQ-SLAEAIAILEPERHLCLLPLATLLE---NIA 170

Query: 318 SVY 320
            VY
Sbjct: 171 GVY 173

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 65.3 bits (160), Expect = 3e-11
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI 309
           +  ATI +TSG+TG PK  V T GN +++  G +  +   P D ++  LPL H+
Sbjct: 77  DRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHV 130

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 66.4 bits (162), Expect = 3e-11
 Identities = 106/515 (20%), Positives = 207/515 (40%), Gaps = 60/515 (11%)

Query: 108 VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVP 167
            G  +W+TYG V A  +E+GSGLL  G++ G  IG+        +I++ AC+ Y + ++P
Sbjct: 452 SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLP 511

Query: 168 LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVV---GGKDEHLPS 224
           L        ++ +++  +I+ +F    ++  +L+      S  L  VV      DE   +
Sbjct: 512 LVGK--GSTMRTLIDEHKIKVVFADRNSVAAILT----CRSRKLETVVYTHSFYDEDDHA 565

Query: 225 LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKG---AVL--THG 279
           +     + LI Y  ++ +G   P P             Y    T +  G   AV+  TH 
Sbjct: 566 VARDLNITLIPYEFVEQKGRLCPVPL-KEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHA 624

Query: 280 NL---ISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLM 336
           ++   IS +    ++   +   + + + P A ++ R   +    +G AV      +L+  
Sbjct: 625 DVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVATVDAAHLQ-- 682

Query: 337 DDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM 396
                 +PTI  + P L++     ++ A +    +   LF  A+  + + I   +  S +
Sbjct: 683 RAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSSL 742

Query: 397 WDRLVFNKIRERLGGRVR--FMGSGASPLSPDVMDFLKVCFGCQVME-GYGMTETSCIIS 453
              + F   +E LGG V    +       S  +++ + VC+   + E  +  +E      
Sbjct: 743 LRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLEHISVCYVPCLREVFFLPSEGVF--- 799

Query: 454 AIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQ 513
            +D         G+P P+ ++ L           D+P     I   G +V     K E +
Sbjct: 800 CVD---------GTPAPSLQVDLEPF--------DEPSDGAGI---GQLVLA--KKGEPR 837

Query: 514 TREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQ 573
               I             W     L+++     I      EYV   ++E ++++ ++V  
Sbjct: 838 RTLPI----------AAQWKRDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVND 887

Query: 574 CFIYGDSFNSCLVAIVAVDPDVLK-DWAASQGIKV 607
            F+Y D     ++AIV+ + D ++ +W  S  +  
Sbjct: 888 IFLYADPSRP-IIAIVSPNRDTVEFEWRQSHCMGE 921

Length = 1452

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 65.7 bits (161), Expect = 5e-11
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH 308
             KP+D ATI ++SG+ G PKG +L+H N++SN+   S +      D+ +S LP  H
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834

Length = 1146

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 65.3 bits (159), Expect = 5e-11
 Identities = 107/504 (21%), Positives = 185/504 (36%), Gaps = 115/504 (22%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TY E+ A  + + + L   G++   R+ +   N      VD        I++     LG
Sbjct: 29  LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNS-----VDAV------IALLALHRLG 77

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
             AV  ++N          P  +  L+    E+ +  + V     D    S      + L
Sbjct: 78  --AVPALMNPR------LKPAEIAELIKR-GEMTAAVIAVDAQVMDAIFQSGSGVRVLAL 128

Query: 234 ISYLQLQSQGCSSPQPFCPP-KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
              + L     + P    PP +PE  A + YTSGTTG PKGAV+      S V   S   
Sbjct: 129 GDLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQA 188

Query: 293 --QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVG-------------FYQGDNLKLMD 337
             +    ++ +  +PL H        V  ++ V V              F   D LKL++
Sbjct: 189 GLRHGRHNVVLGLMPLYH--------VIGFFAVLVAALALDGTYVVVEEFDPADALKLIE 240

Query: 338 DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM- 396
              V                      ++ A+ T  + L  A          +   P K+ 
Sbjct: 241 QERV---------------------TSLFATPTHLDALAAA----------AEGAPLKLD 269

Query: 397 -WDRLVFNKIRERLGGRVRFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISA 454
             + + F               +GA+   PD V++ +      + +  YG TE    +++
Sbjct: 270 SLEHVTF---------------AGAT--MPDAVLERVNQHLPGEKVNIYGTTEA---MNS 309

Query: 455 IDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGE----ICVRGPIVFQGYYKN 510
           +   D  +G    P    E+++V +      S D+  P GE    +       F GY   
Sbjct: 310 LYMRDPRTGTEMRPGFFSEVRIVRIGG----SPDEALPNGEEGELVVAAADATFTGYLNQ 365

Query: 511 EVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKF 570
              T E +  DGW  T D+ +  P G ++I+ R  ++  ++ GE + P ++E V  +   
Sbjct: 366 PQATAEKLQ-DGWYRTSDVAVVDPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAPG 423

Query: 571 VLQCFI-------YGDSFNSCLVA 587
           V +  +       +G S  +C+V 
Sbjct: 424 VTEVVVIGLPDERWGQSVTACVVP 447

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 64.5 bits (158), Expect = 9e-11
 Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 39/200 (19%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISV-------- 166
           TY E+     +  + L   G++KG R+ +++   PE            Y ++        
Sbjct: 75  TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPEL-----------YFALLGALKNGA 123

Query: 167 ---PLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI--SEIPSVHLIVVVGGKDEH 221
              PL++    +AV+  +  +E + +     T   LL      ++PS+  +++VG   E 
Sbjct: 124 IVGPLFEAFMEEAVRDRLEDSEAKVLI----TTPALLERKPADDLPSLKHVLLVGEDVEE 179

Query: 222 LPSLPSTSGVKLISYLQLQSQGCSSPQPFCPP-KPEDIATICYTSGTTGTPKGAVLTHGN 280
            P          + +  L  Q  +S +        ED A + YTSG+TG PKG +  H  
Sbjct: 180 GP--------GTLDFNALMEQ--ASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNA 229

Query: 281 LISNVAGFSLMVQFYPSDIY 300
           ++ +      ++  +  D+Y
Sbjct: 230 MLQHYQTGKYVLDLHEDDVY 249

Length = 570

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 64.4 bits (157), Expect = 1e-10
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 23/144 (15%)

Query: 435 FGCQVMEGYGMTETSCI--ISAIDKG-DNLSGHV--------GSPNPACEIKLVDVPEMN 483
            G +V   +GMTE S +  ++A+      L G          G P    E+K+ D     
Sbjct: 317 MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDD---- 372

Query: 484 YTSEDQPH---PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
              ++ P      G + VRGP V   YY+ +    E++D DG+  TGD+      G ++I
Sbjct: 373 -AGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAYGYMRI 428

Query: 541 IDRKKNIFKLAQGEYVAPEKIENV 564
            DR K++ K + GE+++   +EN+
Sbjct: 429 TDRSKDVIK-SGGEWISSIDLENL 451

Length = 542

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 64.1 bits (157), Expect = 1e-10
 Identities = 123/621 (19%), Positives = 190/621 (30%), Gaps = 233/621 (37%)

Query: 47  LPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDG 106
           LP  L+  K     +  S  +L D F +             A   +PD       +  + 
Sbjct: 18  LPGILRGLKRTALITPDSKRSLGDVFEE-------------AAARHPD----RPALLFED 60

Query: 107 TVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE----WL---------- 152
                  ++Y E++A            G+ KG  + L + NRPE    WL          
Sbjct: 61  QS-----ISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVA 115

Query: 153 -----------------------IVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAI 189
                                  IV           V  ++    D  +           
Sbjct: 116 LLNTQQRGAVLAHSLNLVDAKHLIVGEEL-------VEAFEEARADLARPPRLWVAGGDT 168

Query: 190 FCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQP 249
              P+    L +  +  P+               +  S SGV                  
Sbjct: 169 LDDPEGYEDLAAAAAGAPT--------------TNPASRSGVTA---------------- 198

Query: 250 FCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI 309
                 +D A   YTSGTTG PK AV++H   +  + GF  +++  P D+    LPL   
Sbjct: 199 ------KDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPL--- 249

Query: 310 YERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASG 369
                     Y+                       T+  S               + A  
Sbjct: 250 ----------YHNTGG-------------------TVAWSS-------------VLAAGA 267

Query: 370 T--LREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI--------------------RE 407
           T  LR K F+A               S+ WD +   +                      +
Sbjct: 268 TLALRRK-FSA---------------SRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTD 311

Query: 408 RLGGRVRFM-GSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGHV 465
           R   R+R M G+G   L PD+ D  +  FG  +++E Y  +E    +  I+   N  G V
Sbjct: 312 R-DHRLRLMIGNG---LRPDIWDEFQQRFGIPRILEFYAASE--GNVGFINV-FNFDGTV 364

Query: 466 G-SP-NPACEIKLVDVPEMNYTSED---------QPHPRGE-------ICVRGPIVFQGY 507
           G  P   A    +V   + +  + +              GE       I  RGP  F GY
Sbjct: 365 GRVPLWLAHPYAIV---KYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGP--FDGY 419

Query: 508 YKNEVQTREVI------DGDGWLHTGD----IGLWLPGGRLKIIDRKKNIFKLAQGEYVA 557
              E  + + I       GD W +TGD     G     G  + +DR  + F+  +GE VA
Sbjct: 420 TDPE-ASEKKILRDVFKKGDAWFNTGDLMRDDGF----GHAQFVDRLGDTFRW-KGENVA 473

Query: 558 PEKIENVYAKCKFVLQCFIYG 578
             ++EN  +    V +  +YG
Sbjct: 474 TTEVENALSGFPGVEEAVVYG 494

Length = 600

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 414 RFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV-GSP-NPA 471
           R +  G + LS  +   +    GCQ+ + +GM E     + +D    +  H  G P +P 
Sbjct: 308 RLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPD 367

Query: 472 CEIKLVDVPEMNYTSEDQPHPRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGD 528
            E+++VD       ++  P   GE+     RGP   +GYY+         D DG+  +GD
Sbjct: 368 DEVRVVD-------ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGD 420

Query: 529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
           +    P G L +  R K+      GE +A E++EN
Sbjct: 421 LVRRDPDGYLVVEGRVKDQINRG-GEKIAAEEVEN 454

Length = 542

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 26/212 (12%)

Query: 396 MWDRL--VFNKIRERLGGR-VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCII 452
           M+DR+  +  ++R R  GR +RF  +  S + PDV+      FG  +   Y  TE   I 
Sbjct: 294 MFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMI- 352

Query: 453 SAIDKGDNLSGH---VGSPNPACEIKLVDVPEMNYTSEDQPHPRGE---ICVRGPIVFQG 506
            A     +L       G P    EI+++D        + +  P GE   I VR    F G
Sbjct: 353 -ATATPADLRAAPDTAGRPAEGTEIRILD-------QDFREVPTGEVGTIFVRNDTQFDG 404

Query: 507 YYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYA 566
           Y      T++  DG  ++ +GD+G     GRL ++ R   +  ++ GE V P ++E   A
Sbjct: 405 YTSG--STKDFHDG--FMASGDVGYLDENGRLFVVGRDDEMI-VSGGENVYPIEVEKTLA 459

Query: 567 KCKFVLQCFIYG---DSFNSCLVAIVAVDPDV 595
               V +  + G   + +   L A V + P  
Sbjct: 460 THPDVAEAAVIGVDDEQYGQRLAAFVVLKPGA 491

Length = 537

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 81/332 (24%), Positives = 135/332 (40%), Gaps = 63/332 (18%)

Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV-QFYPSDIYMSYLPLAHIYER 312
             +D+A I +TSGTTG PKG +  H ++++    F   V Q  P D+++   PLA  +  
Sbjct: 145 AADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGL 204

Query: 313 ANQIV-SVYYGV-AVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGT 370
              ++  + +G  AV   Q     L+  +   + TI  + P  Y      +   VKA   
Sbjct: 205 GGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYR----AMLIKVKAFDI 260

Query: 371 LREKLFTAAYNSKKQAIVSGQT-PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD 429
                     +S ++ + +G+T P+K+W         ER G +                 
Sbjct: 261 ----------SSLRKCVSAGETLPAKVWQDW-----YERTGLK----------------- 288

Query: 430 FLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQ 489
                    +++G G TE   I  + ++ +   G  G P P  E ++VD        +  
Sbjct: 289 ---------IIDGIGATEMLHIFISANEENAKPGATGKPVPGYEARIVD-------DQGN 332

Query: 490 PHPRGE---ICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
             PRGE   + VRGP   + Y  +E Q   V   DGW  TGDI      G    + R  +
Sbjct: 333 EVPRGEAGRLAVRGPTGCR-YLDDERQQEYV--RDGWNVTGDIFRQDEDGYFHYVARSDD 389

Query: 547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
           +  ++ G  +A  ++E+       V +C + G
Sbjct: 390 MI-VSAGYNIAAPEVEDALLTHPDVAECAVIG 420

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 49/176 (27%), Positives = 64/176 (36%), Gaps = 48/176 (27%)

Query: 414 RFMGSGASPLSPDVMDFLKVCFGCQ------VMEGYGMTETSCIISAIDKG--------- 458
           R  G GA  + PDV+      F          M  YG+ E +  +S    G         
Sbjct: 302 RVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVD 361

Query: 459 -DNLSGH------------------VGSPNPACEIKLVDVPEMNYTSEDQPHPR-GEICV 498
            D L                      G   P  EI++ +           P    G ICV
Sbjct: 362 RDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNE-----AGMPLPERVVGHICV 416

Query: 499 RGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG-----GRLK--IIDRKKNI 547
           RGP +  GY+++E     V+  DGWL TGD+G  L G     GR K  II   +NI
Sbjct: 417 RGPSLMSGYFRDEESQD-VLAADGWLDTGDLGYLLDGYLYITGRAKDLIIINGRNI 471

Length = 579

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 62.5 bits (152), Expect = 4e-10
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 17/74 (22%)

Query: 248 QPFCP--PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYP--------- 296
           QP     P+ +D+A + YT GTTG  KGA+LTH NL++N      M+Q            
Sbjct: 197 QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVAN------MLQCRALMGSNLNEG 250

Query: 297 SDIYMSYLPLAHIY 310
            +I ++ LPL HIY
Sbjct: 251 CEILIAPLPLYHIY 264

Length = 562

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 61.9 bits (151), Expect = 6e-10
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 27/141 (19%)

Query: 435 FGCQVMEGYGMTETSCIISAIDKGDNLSGHV----GSP-NPACEIKLVDVPEMNYTSEDQ 489
            GCQ+ + +GM E     + +D  D     +    G P +P  E+ + D       ++  
Sbjct: 324 LGCQLQQVFGMAEGLVNYTRLDDSDE---RIFTTQGRPMSPDDEVWVAD-------ADGN 373

Query: 490 PHPRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
           P P+GE+     RGP  F+GYYK+        D +G+  +GD+    P G + ++ R+K+
Sbjct: 374 PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKD 433

Query: 547 IFKLAQ----GEYVAPEKIEN 563
                Q    GE +A E+IEN
Sbjct: 434 -----QINRGGEKIAAEEIEN 449

Length = 536

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 59.9 bits (146), Expect = 2e-09
 Identities = 51/229 (22%), Positives = 76/229 (33%), Gaps = 53/229 (23%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           TL D        +PD      R  V   V G + +TY E+ AA   + +GLL  G+  G 
Sbjct: 16  TLGDLLAANAARHPD------RTAV---VDGPRRLTYRELDAAVDRLAAGLLALGIGPGD 66

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
           R+ + L N  E++I+  A      I V                  EI             
Sbjct: 67  RVLVQLPNVAEFVILYFALFKLGAIPVLALPAHR---------AHEIGH----------- 106

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
             F  +  +   I+     D                Y  L  +         P    D+A
Sbjct: 107 --FARQSEAKAYII----ADRF----------SGFDYAALARELLEE----LP----DVA 142

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH 308
               + GTTG PK    TH + + +    +      P  +Y++ LP AH
Sbjct: 143 LFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAH 191

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 60.5 bits (146), Expect = 2e-09
 Identities = 65/355 (18%), Positives = 113/355 (31%), Gaps = 67/355 (18%)

Query: 228 TSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAG 287
               K         +                  + YT+GTTG PKG V +H  L+ +   
Sbjct: 125 VMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLA 184

Query: 288 FSLMVQFY--PSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQGDNLKLM-DDLAVLK 343
            SL+        D+ +  +P+ H+         ++     V      +   + +      
Sbjct: 185 ASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEG 244

Query: 344 PTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFN 403
            T    VP ++  + A    +                                       
Sbjct: 245 VTFTAGVPTVWLAL-ADYLESTGHRLK--------------------------TL----- 272

Query: 404 KIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTE-----TSCI------I 452
                     R +  G++   P  +       G +V +GYG+TE                
Sbjct: 273 ---------RRLVVGGSAA--PRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLES 321

Query: 453 SAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICV---RGPIVFQGYYK 509
            + ++   L    G P P   +++ D           P     +     +GP +  GYY 
Sbjct: 322 LSEEEKLTLKAKTGLPIPLVRLRVADEEGRPV-----PKDGKALGEVQLKGPWITGGYYG 376

Query: 510 NEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           NE  TR  +  DG+  TGDI +W   G ++I DR K++ K   GE+++   +EN 
Sbjct: 377 NEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENA 430

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 103 RVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS 162
           RV+G +  Y   TY +     K++   L   G++ G R+G    N    L   +  S   
Sbjct: 32  RVEGDIHRY---TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSG 88

Query: 163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVGGKDEH 221
            +   +   L P+ + Y+VNHAE +       T   L+  ++ + P+V   V +     H
Sbjct: 89  AVCHTINPRLFPEQIAYIVNHAE-DRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAA-H 146

Query: 222 LPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIAT-ICYTSGTTGTPKGAVLTH 278
           LP+        L+ Y  L   G        P   E+ A+ +CYTSGTTG PKGA+ +H
Sbjct: 147 LPA----GSTPLLCYETLV--GAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSH 198

Length = 539

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 59.6 bits (145), Expect = 3e-09
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLW 532
           E ++VD  + N  +  +    GEI  R P +  GY+ +  +T E   G GW H+GD+G+ 
Sbjct: 351 ETRVVD-DDGNDVAPGEV---GEIVHRSPQLMLGYWDDPEKTAEAFRG-GWFHSGDLGVM 405

Query: 533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
              G + ++DRKK++ K   GE VA  ++E  
Sbjct: 406 DEEGYITVVDRKKDMIKTG-GENVASREVEEA 436

Length = 523

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 58.9 bits (143), Expect = 4e-09
 Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 487 EDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
           E  P   GEICV GP VF GYY N     +    DGW  TGD+G     G L I  R  +
Sbjct: 360 ELPPGETGEICVIGPAVFAGYYNNPEANAKAFR-DGWFRTGDLGHLDARGFLYITGRASD 418

Query: 547 IFKLAQGEYVAPEKIE 562
           ++ ++ G  V P +IE
Sbjct: 419 MY-ISGGSNVYPREIE 433

Length = 528

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 58.5 bits (142), Expect = 6e-09
 Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 26/202 (12%)

Query: 114 MTYGEVSAARKEIGSGL-LFH--GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYD 170
           +TYG+       I   +  F   GL  G  + L  +NRPE L+   A          L+ 
Sbjct: 38  LTYGQ---LADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHP 94

Query: 171 TLGPDAVKYVVNHAEIEAIFCIPQT-LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
               D   YV+  A I  +   P   +   L+ ++ +PS+  ++ +G         P   
Sbjct: 95  LGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLG---------PVPD 145

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPK-PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
           GV L++       G   P P      P DIA + YT GTTG PKG + TH ++ +     
Sbjct: 146 GVDLLA--AAAKFG---PAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQ-- 198

Query: 289 SLMVQF-YPSDI-YMSYLPLAH 308
             + ++ +P+D  ++   PL+H
Sbjct: 199 IQLAEWEWPADPRFLMCTPLSH 220

Length = 524

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 58.2 bits (141), Expect = 7e-09
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 24/160 (15%)

Query: 419 GASPLSPDVMDFLKVCFGCQVMEGYGMTE-----TSCIISA--IDKGDNLSGHV----GS 467
           G S   P ++   +  +G +V+  +GMTE     T C +         +    +    G 
Sbjct: 301 GGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGR 360

Query: 468 PNPACEIKLVDVPEMNYTSEDQPH---PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL 524
                ++K+V          + P      G++ VRGP V   Y++ +         DGW 
Sbjct: 361 VIYGVDMKIVGD-----DGRELPWDGKAFGDLQVRGPWVIDRYFRGDASPLV----DGWF 411

Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
            TGD+      G ++I DR K++ K + GE+++   IENV
Sbjct: 412 PTGDVATIDADGFMQITDRSKDVIK-SGGEWISSIDIENV 450

Length = 539

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 57.9 bits (141), Expect = 8e-09
 Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 36/173 (20%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI----VDHACSAYSYISVPLY 169
           +TY E++     +   L   G+  G  + L L   PE ++    +  A +AY    VPL 
Sbjct: 13  LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAY----VPL- 67

Query: 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
           D   P                         L+F+ E     +++     DE L  L    
Sbjct: 68  DPAYPAER----------------------LAFMLEDSGARVLLT----DESLAPLARAD 101

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLI 282
            + L+     +     +  P      +D+A + YTSG+TG PKG  + H  ++
Sbjct: 102 QLPLVILE-EELDAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 58.3 bits (141), Expect = 9e-09
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 494 GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG 553
           GEI +RG +V +GY KN     E     GW H+GD+G+  P G ++I DR K+I  ++ G
Sbjct: 403 GEIVMRGNMVMKGYLKNPKANEEAFAN-GWFHSGDLGVKHPDGYIEIKDRSKDII-ISGG 460

Query: 554 EYVAPEKIENV 564
           E ++  ++ENV
Sbjct: 461 ENISSLEVENV 471

Length = 567

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 29/207 (14%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISV-PLYDTLG 173
           TY ++     ++   L   G++ G R+         W    H  + Y  + +  +  T+ 
Sbjct: 41  TYAQIHDRALKVSQALDRDGIKLGDRVATI-----AWNTWRHLEAWYGIMGIGAICHTVN 95

Query: 174 P----DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
           P    + + +++NHAE   +      +  L     ++PSV   VV+         +P T+
Sbjct: 96  PRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAH----MPQTT 151

Query: 230 GVKLISYLQL--QSQGCSSPQPFCPPKPEDIAT-ICYTSGTTGTPKGAVLTHGN-----L 281
               ++Y +   ++ G  + + F     E+ A  +CYTSGTTG PKG + +H +     L
Sbjct: 152 LKNAVAYEEWIAEADGDFAWKTF----DENTAAGMCYTSGTTGDPKGVLYSHRSNVLHAL 207

Query: 282 ISNVAGFSLMVQFYPSDIYMSYLPLAH 308
           ++N            +D  +  +PL H
Sbjct: 208 MANNGDALGTSA---ADTMLPVVPLFH 231

Length = 542

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.2 bits (139), Expect = 2e-08
 Identities = 52/213 (24%), Positives = 80/213 (37%), Gaps = 31/213 (14%)

Query: 105 DGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYI 164
            G V     +TYGE+ A    +  GL   GL++G  + + L N PE+  V  A       
Sbjct: 8   SGEV-----VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLY 62

Query: 165 SVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPS--VHLIVVVGGKDEHL 222
             P+   L    + Y+V+ +  + +       +T     +E+P+    L+VV G      
Sbjct: 63  YTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFR 122

Query: 223 PSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDI-ATICYTSGTTGTPKGAV--LTHG 279
                        Y +  +      QP  P   E   A + Y+SGTTG PKG    L   
Sbjct: 123 S------------YEEALAA-----QPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGL 165

Query: 280 ----NLISNVAGFSLMVQFYPSDIYMSYLPLAH 308
                    +A     +   P  +Y+S  PL H
Sbjct: 166 DPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYH 198

Length = 502

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 40/171 (23%), Positives = 63/171 (36%), Gaps = 29/171 (16%)

Query: 443 YGMTETSCIISAIDKGDNLSG--HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG 500
           YGMTET+  I+ +   D L+G    G   P  +I +              +  G I ++ 
Sbjct: 261 YGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP------------ANQTGNITIQA 308

Query: 501 PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEK 560
             +  GYY        ++D  G   T D+G     G L I+ R      +  GE V P +
Sbjct: 309 QSLALGYYPQ------ILDSQGIFETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPAE 361

Query: 561 IENVYAKCKFVLQCFIYG--DS-FNSCLVAIV-----AVDPDVLKDWAASQ 603
           +E        V    + G  D  +   + AI      ++  + LK     Q
Sbjct: 362 VEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKTAIKDQ 412

Length = 452

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 6/59 (10%)

Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVA----GFSLMVQFYPSDIYMSYLPLAH 308
           +P+DIA + YTSG+T  PKG  ++HGNL++N      GF + +   P D+ +S+LPL H
Sbjct: 164 QPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLN--PDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 56.8 bits (137), Expect = 3e-08
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 12/97 (12%)

Query: 225 LPSTSGVKLISYLQLQSQGC-SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS 283
           +P+    + + + Q   QG   S +P  P   +DIA + YT GTTG  KGA+LTHGNL++
Sbjct: 176 VPAYHLPQAVPFKQALRQGRGLSLKPV-PVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVA 234

Query: 284 NVAG-FSLMVQFYP---------SDIYMSYLPLAHIY 310
           N+    + + Q  P          ++ ++ LPL HIY
Sbjct: 235 NMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIY 271

Length = 562

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 56.4 bits (137), Expect = 3e-08
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 23/160 (14%)

Query: 418 SGASPLSPDVMDFLKVCF--GCQVMEGYGMTETSCIISAI----------DKGDNLSGH- 464
           S  +P+   V++  +       +++  YG TE +  IS+I             DN +G  
Sbjct: 295 SAGAPVPIAVIERFRAMLPPDAEILTPYGATE-ALPISSIESREILFATRAATDNGAGIC 353

Query: 465 VGSPNPACEIKLVDVPE--MNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTRE--V 517
           VG P    E++++ + +  +    +         GEI V GP+V + YY     TR   +
Sbjct: 354 VGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKI 413

Query: 518 IDGDG--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY 555
            DG G  W   GD+G     GRL    RK +  + A G  
Sbjct: 414 PDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTL 453

Length = 552

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 55.4 bits (134), Expect = 6e-08
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 105 DGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYI 164
           DG+V  +   TY E++     + SGL   GL KG R+G+Y+   PE ++   A +    I
Sbjct: 2   DGSVRTW---TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58

Query: 165 SVPLYDTLGPDAVKYVVNHAEIEAIFC 191
           +VP++   GPDAV   +  AE + +  
Sbjct: 59  AVPIFSGFGPDAVATRLQDAEAKVLIT 85

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 55.9 bits (135), Expect = 6e-08
 Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 32/198 (16%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI----VDHACSAYSYISVPLY 169
           ++Y E++     +   L+  G+   V +G+ +    E ++    V  A  AY    VPL 
Sbjct: 538 LSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAY----VPLD 593

Query: 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
                D + Y+++ + +  +      L              L V  G     L SL    
Sbjct: 594 PEYPQDRLAYMLDDSGVRLLLTQSHLLA------------QLPVPAG-----LRSLC--- 633

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS 289
               +        G S   P     P+++A + YTSG+TG PKG  ++HG L + V   +
Sbjct: 634 ----LDEPADLLCGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIA 689

Query: 290 LMVQFYPSDIYMSYLPLA 307
             +Q    D  +     A
Sbjct: 690 ERLQLAADDSMLMVSTFA 707

Length = 3956

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 55.9 bits (135), Expect = 7e-08
 Identities = 48/204 (23%), Positives = 81/204 (39%), Gaps = 36/204 (17%)

Query: 110  GYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE----WLIVDHACSAYSYIS 165
            G + +TYGE++     +   L+  G+   V +G+ +    E     L +  A  AY    
Sbjct: 1596 GEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAY---- 1651

Query: 166  VPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSL 225
            VPL      + + Y++  + IE           LL   S +                  L
Sbjct: 1652 VPLDPEYPRERLAYMIEDSGIE-----------LLLTQSHL---------------QARL 1685

Query: 226  PSTSGVKLISYLQLQS--QGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS 283
            P   G++ +   Q     +G S   P     P+++A + YTSG+TG PKGA   HG L++
Sbjct: 1686 PLPDGLRSLVLDQEDDWLEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVN 1745

Query: 284  NVAGFSLMVQFYPSDIYMSYLPLA 307
             +       Q   +D+ + +   A
Sbjct: 1746 RLCATQEAYQLSAADVVLQFTSFA 1769

Length = 3956

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 55.1 bits (133), Expect = 7e-08
 Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 30/130 (23%)

Query: 416 MGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIK 475
            G+  +P   D+  F +  FGC V++G+G TE    I+     D   G +G   P   + 
Sbjct: 273 YGNEGAP--GDIARFARR-FGCVVVDGFGSTEGGVAITRTP--DTPPGALGPLPPG--VA 325

Query: 476 LVDVPEMNYTSEDQPHPRGEIC----------------VRGPIVFQGYYKNEVQTREVID 519
           +VD P+          P  E                    GP  F+GYY +     E + 
Sbjct: 326 IVD-PDTG-----TECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR 379

Query: 520 GDGWLHTGDI 529
             G   +GD+
Sbjct: 380 -GGVYWSGDL 388

Length = 529

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 54.5 bits (132), Expect = 1e-07
 Identities = 55/218 (25%), Positives = 85/218 (38%), Gaps = 54/218 (24%)

Query: 111 YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLY- 169
           Y  +++ E+ A    I  GL   G+ +G+R    L+  P               S+  + 
Sbjct: 39  YDELSFAELDARSDAIAHGLNAAGIGRGMRA--VLMVTP---------------SLEFFA 81

Query: 170 ---------------DT-LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI--SEIPSVHL 211
                          D  +G   +K  +  A+ +A   IP     L   +     PSV  
Sbjct: 82  LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIP--KAHLARRLFGWGKPSVRR 139

Query: 212 IVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTP 271
           +V VGG+           G  L + L+  +    +P P     P+D+A I +TSG+TGTP
Sbjct: 140 LVTVGGR-------LLWGGTTLATLLRDGAA---APFPMADLAPDDMAAILFTSGSTGTP 189

Query: 272 KGAVLTHGNLISNVAGFSLMVQFY---PSDIYMSYLPL 306
           KG V THG      A    + + Y   P +I +   PL
Sbjct: 190 KGVVYTHGMF---EAQIEALREDYGIEPGEIDLPTFPL 224

Length = 552

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 54.1 bits (131), Expect = 1e-07
 Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 26/190 (13%)

Query: 431 LKVCF-GCQVMEGYGMTETS--CIISAIDKGDNLSGHV--GSPNPACEIKLVDVPEMNYT 485
           L+    G +++   G TE S   I   ID  D     +  G P P  +  ++D       
Sbjct: 263 LRALAPGARLVSLGGATEASIWSIYYPIDDVDPDWRSIPYGKPLPNQKFYVLD-----ED 317

Query: 486 SEDQPH--PRGEICVRGPIVFQGYYKNEVQTRE--VIDGDG--WLHTGDIGLWLPGGRLK 539
             D P   P GE+ + G  V  GY+ +   T E  +    G     TGD+G + P G ++
Sbjct: 318 GRDCPDWVP-GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIE 376

Query: 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQ--CFIYGDSFNSCLVAIV------AV 591
            + R  +  K+ +G  V   +IE   A+   V +    + GD     L A V      AV
Sbjct: 377 FLGRADHQVKI-RGYRVELGEIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAV 435

Query: 592 DPDVLKDWAA 601
           D  VL+   A
Sbjct: 436 DAAVLRAALA 445

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 249 PFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM-VQFYPSDIYMSYLPLA 307
               P P+DIA + Y+SG+T  P+G ++TH  L++N+   S   ++  P D  +S+LP  
Sbjct: 169 ALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFY 228

Query: 308 H 308
           H
Sbjct: 229 H 229

Length = 579

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 53.7 bits (130), Expect = 2e-07
 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 36/185 (19%)

Query: 443 YGMTETSCIISAI-------DKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGE 495
           YG TE +  +++I       D+   L   +G   P   + ++D  E     + +    GE
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQYKRLP--IGYAKPDSPLLIID-EEGTKLPDGEQ---GE 346

Query: 496 ICVRGPIVFQGYYKNEVQTREV---IDGDGWLHTGDIG-----LWLPGGRLKIIDRKKNI 547
           I + GP V +GY  N  +T E     DG    HTGD G     L    GR   ID     
Sbjct: 347 IVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLEDGLLFYQGR---ID----- 398

Query: 548 F--KLAQGEYVAPEKIENVYAKCKFVLQCF---IYGDSFNSCLVA-IVAVDPDVLKDWAA 601
           F  KL  G  +  E+IE    +  +V          D     L+A +V  + D  +++  
Sbjct: 399 FQIKLN-GYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFEL 457

Query: 602 SQGIK 606
           ++ IK
Sbjct: 458 TKAIK 462

Length = 503

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 5/61 (8%)

Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNV----AGFSLMVQFYPSDIYMSYLPLAHI 309
            PED+A + YT GTTG  KGA+LTH N+++N+    A +  ++     ++ ++ LPL HI
Sbjct: 204 VPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLH-PGKELVVTALPLYHI 262

Query: 310 Y 310
           +
Sbjct: 263 F 263

Length = 560

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 5/157 (3%)

Query: 411 GRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNL-SGHVGSPN 469
             +R + S   PL+P+V+ + +   G  + + +  TET  I+ A   G  +  G +G P 
Sbjct: 207 SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPL 266

Query: 470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVIDGDGWLHTG 527
           P  E  +++      T    P   GE+ ++   P +F+GY  NE +       DGW  TG
Sbjct: 267 PGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSF-VDGWYLTG 325

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           D+      G    + R  ++ K A G  V P ++E+ 
Sbjct: 326 DLAYRDEDGYFWFVGRADDVIKTA-GHLVGPFEVESA 361

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 16/128 (12%)

Query: 412 RVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPA 471
           RV F G+ ASP   D+ +F +  FGCQV +GYG +E + I+          G +G   P 
Sbjct: 268 RVAF-GNEASP--RDIAEFSRR-FGCQVEDGYGSSEGAVIVVREP--GTPPGSIGRGAPG 321

Query: 472 CEIKLVDVPEMNYTSEDQPHPR--------GEICVR-GPIVFQGYYKNEVQTREVIDGDG 522
             I   +       +    H          GE+    G   F+GYY N   T E +   G
Sbjct: 322 VAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMR-HG 380

Query: 523 WLHTGDIG 530
              +GD+ 
Sbjct: 381 MYWSGDLA 388

Length = 540

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 52.1 bits (125), Expect = 7e-07
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 247 PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF-YPSDIYMSYLP 305
                PP     A +  T+G+TGTP+ A+L+ G ++SN+ G +  V     +D+  S+LP
Sbjct: 143 SASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLP 202

Query: 306 LAH 308
           L H
Sbjct: 203 LYH 205

Length = 525

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 59/265 (22%), Positives = 98/265 (36%), Gaps = 69/265 (26%)

Query: 64  SPLTLVDR----FPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEV 119
           +PL+ ++R    +PD P +       I+           G R R           T+ E 
Sbjct: 19  TPLSFLERAAEVYPDRPAV-------IH-----------GDRRR-----------TWAET 49

Query: 120 SAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVP--------LYDT 171
            A  + + S L   G+ +G  + + L N P  +             VP        L   
Sbjct: 50  YARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFG--------VPMAGAVLNTLNTR 101

Query: 172 LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV 231
           L   ++ +++ H E + +    +        ++ +P    +V+    D   P  P    +
Sbjct: 102 LDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVI----DVDDPEYPGGRFI 157

Query: 232 KLISYLQLQSQGCSSPQPFCPPKPED----IATICYTSGTTGTPKGAVLTH-G---NLIS 283
             + Y    + G   P  F    P D    IA + YTSGTTG PKG V  H G   N +S
Sbjct: 158 GALDYEAFLASG--DP-DFAWTLPADEWDAIA-LNYTSGTTGNPKGVVYHHRGAYLNALS 213

Query: 284 NVAGFSLMVQFYPSDIYMSYLPLAH 308
           N+  + +        +Y+  LP+ H
Sbjct: 214 NILAWGMP----KHPVYLWTLPMFH 234

Length = 545

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 51.5 bits (123), Expect = 2e-06
 Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 35/199 (17%)

Query: 114  MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE----WLIVDHACSAYSYISVPLY 169
            +TY E++     +   L+  G+   V +G+ +    E     L V  A  AY    VPL 
Sbjct: 4577 LTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAY----VPL- 4631

Query: 170  DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
                           + E     P+     L+++ E     L++    +   L  LP   
Sbjct: 4632 ---------------DPE----YPRER---LAYMMEDSGAALLLT---QSHLLQRLPIPD 4666

Query: 230  GVKLISYLQLQS-QGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
            G+  ++  + +  +G  +  P     P+++A + YTSG+TG PKG  ++HG+L++++   
Sbjct: 4667 GLASLALDRDEDWEGFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHAT 4726

Query: 289  SLMVQFYPSDIYMSYLPLA 307
                +  P D  + ++  +
Sbjct: 4727 GERYELTPDDRVLQFMSFS 4745

Length = 5163

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 23/81 (28%), Positives = 36/81 (44%)

Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
            G    S L                +P+ +AT+  TSG+TG PK AV T    +++  G 
Sbjct: 108 EGENTFSALTSLHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGV 167

Query: 289 SLMVQFYPSDIYMSYLPLAHI 309
             ++ F   D ++  LPL H+
Sbjct: 168 LSLMPFTAQDSWLLSLPLFHV 188

Length = 458

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 50.0 bits (119), Expect = 4e-06
 Identities = 92/503 (18%), Positives = 164/503 (32%), Gaps = 109/503 (21%)

Query: 74   DHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH 133
            ++P    +H  F   VE  PD   L           G + ++Y E++     +   L+  
Sbjct: 3052 EYPLERGVHRLFEEQVERTPDAVAL---------AFGEQRLSYAELNRRANRLAHRLIER 3102

Query: 134  GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIP 193
            G+   V +G+ +    E ++   A        VPL      + + Y++  +  +      
Sbjct: 3103 GVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQ------ 3156

Query: 194  QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPP 253
                 LLS                   HL  LP   GV+++  L    +  +   P    
Sbjct: 3157 ----LLLS-----------------QSHL-RLPLAQGVQVLD-LDRGDENYAEANPAIRT 3193

Query: 254  KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA 313
             PE++A + YTSG+TG PKG  + H  L +++                            
Sbjct: 3194 MPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCW-------------------------- 3227

Query: 314  NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFP---SVPRLYNRIYAGITNAVKASGT 370
                                 L     VL+ T F     V  L+  + +G    +     
Sbjct: 3228 ---------------MQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVLAGPED 3272

Query: 371  LREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDF 430
             R+        + +   V    PS M  +    +        ++ +  G   L  D+   
Sbjct: 3273 WRDPALLVELINSEGVDVLHAYPS-ML-QAFLEEEDAHRCTSLKRIVCGGEALPADLQQ- 3329

Query: 431  LKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH--VGSPNPACEIKLVDVPEMNYTSED 488
             +V  G  +   YG TE +  ++     +       +G P       ++D          
Sbjct: 3330 -QVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILD-------GSL 3381

Query: 489  QPHPRG---EICVRGPIVFQGYYKNEVQTRE------VIDGDGWLHTGDIGLWLPGGRLK 539
            +P P G   E+ + G  + +GY+     T E       + G+    TGD+  +   G ++
Sbjct: 3382 EPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIE 3441

Query: 540  IIDR-----KKNIFKLAQGEYVA 557
             I R     K   F++  GE  A
Sbjct: 3442 YIGRVDHQVKIRGFRIELGEIEA 3464

Length = 5163

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 45/217 (20%), Positives = 75/217 (34%), Gaps = 46/217 (21%)

Query: 110 GYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLY 169
              W T+ E++    ++ +     G + G  + L++ NR E++ +    +     +  + 
Sbjct: 1   DRHW-TFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALIN 59

Query: 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
             L  +++ + +  ++ +A   I   L+ LL+  S  P                  PS  
Sbjct: 60  SNLRLESLLHCITVSKAKA--LIFNLLDPLLTQSSTEP------------------PSQD 99

Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS 289
            V                         D     YTSGTTG PK AV+ H       AG  
Sbjct: 100 DVNF----------------------RDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAY 137

Query: 290 LMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVG 326
                 P D+    LPL   Y  A  I+ V   +  G
Sbjct: 138 YAFGMRPEDVVYDCLPL---YHSAGGIMGVGQALLHG 171

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 46/202 (22%), Positives = 76/202 (37%), Gaps = 24/202 (11%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC--SAYSYISVPLYDTL 172
           TY E+      +       GL++G  + +++ N   +L V  A   S   Y  V  +  L
Sbjct: 26  TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH--L 83

Query: 173 GPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232
            P    Y+V+ +   A+      L+   + + + P V   +V+ G  E    L    G  
Sbjct: 84  TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGE----LEGFVGY- 138

Query: 233 LISYLQLQSQGCSSPQPFCPPKPEDIAT-ICYTSGTTGTPKG--AVLTHGNLISNVAGFS 289
                        +  P  P   E + T + Y+SGTTG PKG    L      + +   +
Sbjct: 139 ---------AEAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTA 189

Query: 290 L---MVQFYPSDIYMSYLPLAH 308
               +  F    +Y+S  PL H
Sbjct: 190 FLQRLWGFRSDMVYLSPAPLYH 211

Length = 511

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 49.1 bits (118), Expect = 5e-06
 Identities = 42/203 (20%), Positives = 73/203 (35%), Gaps = 52/203 (25%)

Query: 89  VENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYL 145
            +  PD   Y YLG +            +TYG++      + + +    L     I ++ 
Sbjct: 12  AQTQPDFPAYDYLGEK------------LTYGQLKEDSDALAAFIDSLKLPDKSPIIVFG 59

Query: 146 INRPEWLIVDHAC--SAYSYISVPLYDTLGP-DAVKYVVNHAEIEAIFCIPQTLNTLLSF 202
              PE L        + ++YI V   D   P + ++ ++  A+   I             
Sbjct: 60  HMSPEMLATFLGAVKAGHAYIPV---DVSSPAERIEMIIEVAKPSLIIAT---------- 106

Query: 203 ISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGC--SSPQPFCPPKPEDIAT 260
             E+P                      G+ +I+  +L+      +        K +D   
Sbjct: 107 -EELP------------------LEILGIPVITLDELKDIFATGNPYDFDHAVKGDDNYY 147

Query: 261 ICYTSGTTGTPKGAVLTHGNLIS 283
           I +TSGTTG PKG  ++H NL+S
Sbjct: 148 IIFTSGTTGKPKGVQISHDNLVS 170

Length = 503

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 48.7 bits (117), Expect = 6e-06
 Identities = 21/82 (25%), Positives = 41/82 (50%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY E++     + +GLL  G++ G R+ L L N PE+L    A +    ++VP+   L  
Sbjct: 5   TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64

Query: 175 DAVKYVVNHAEIEAIFCIPQTL 196
           + + ++++H+    I      +
Sbjct: 65  EELAHILDHSGARLIVVDTAAI 86

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 48.1 bits (115), Expect = 9e-06
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           T+ E+        + L   G+ +G R+ + L   PE   V   C     + +P    LGP
Sbjct: 2   TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61

Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFIS 204
             ++Y +  A   AI         LL F S
Sbjct: 62  KDIRYRLERAGARAIVTSADDP-ALLYFTS 90

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 42/213 (19%), Positives = 75/213 (35%), Gaps = 27/213 (12%)

Query: 108 VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISV- 166
           + G + ++Y E+      + +GL   G++ G  + + L N  E+ I   A        V 
Sbjct: 48  IDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVL 107

Query: 167 --PLYDTLGPD-------AVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGG 217
             P +             A   +V  A   + F        L++   + P++  ++V G 
Sbjct: 108 ALPSHRASELGAFASQIEAALLIV--ARQHSGFDYRPFARELVA---KHPTLRHVIVAGE 162

Query: 218 KDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLT 277
            +                   L         P  P    ++A    + GTTGTPK    T
Sbjct: 163 AEHPSVLE-----------AALCHPA-GLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRT 210

Query: 278 HGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY 310
           H +   +V   + +  F    +Y+  LP AH +
Sbjct: 211 HNDYYYSVRASAEICGFDQQTVYLCALPAAHNF 243

Length = 542

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 28/199 (14%)

Query: 113 WMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTL 172
           W  +   SAAR       L     +   +G+ L N PE+ ++  A +    + V L  T 
Sbjct: 31  WREHIRGSAARAAALRARL--DPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPTR 88

Query: 173 GPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232
              A+   + HA+ + +             ++E     L+  +      +        V 
Sbjct: 89  RGAALARDIAHADCQLV-------------LTESAHAELLDGLDPGVRVI-------NVD 128

Query: 233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
             ++    +    +  PF    P+D+  + +TSGT+G PK    TH  + S  AG  L  
Sbjct: 129 SPAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVAS--AGVMLAQ 186

Query: 293 QF--YPSDI-YMSYLPLAH 308
           +F   P D+ Y+S +PL H
Sbjct: 187 RFGLGPDDVCYVS-MPLFH 204

Length = 529

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLI 282
              P+D+A + +TSG+TG PKG ++TH   +
Sbjct: 122 RVDPDDLAYVIFTSGSTGEPKGVMITHRAAV 152

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 47/182 (25%), Positives = 73/182 (40%), Gaps = 31/182 (17%)

Query: 411 GRVRFMGSGASPLSPDVMD-FLKVC--FGCQ---VMEGYGMTETSCIISA---------- 454
           G +R   +G  P+  D  + F      FG         YG+ E++C ++           
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331

Query: 455 ---IDKGDNLSGH--VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYK 509
               D G     H  +G+P P  E+++         +       GEI +RG  +  GY  
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRISPGDG---AAGVAGREIGEIEIRGASMMSGYLG 388

Query: 510 NEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCK 569
                   ID D W  TGD+G  + GG L +  R K +  +A G  + P +IE V A+ +
Sbjct: 389 QAP-----IDPDDWFPTGDLGYLVDGG-LVVCGRAKELITVA-GRNIFPTEIERVAAQVR 441

Query: 570 FV 571
            V
Sbjct: 442 GV 443

Length = 525

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
            + LP       +  + Y    +       P    +P   A I +TSG+TG PKG ++  
Sbjct: 563 ADQLPRFADVPDLTSLCYNAPLAP--QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQ 620

Length = 1296

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 47/196 (23%)

Query: 92  YPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW 151
              Y+Y G              +TY ++      + + +    L K   I +Y    P  
Sbjct: 16  TIAYRYQGQE------------LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHM 63

Query: 152 LIVDHAC--SAYSYISVPLYDTLGP-DAVKYVVNHAEIEAIFCI-PQTLNTLLSFISEIP 207
           L+       S ++YI V   DT  P + ++ ++  A  E +      +++ + + I  + 
Sbjct: 64  LVAFLGSIKSGHAYIPV---DTSIPSERIEMIIEAAGPELVIHTAELSIDAVGTQIITLS 120

Query: 208 SVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGT 267
           ++        +    P             +                K +D   I YTSG+
Sbjct: 121 ALEQA-----ETSGGP-------------VSFDH----------AVKGDDNYYIIYTSGS 152

Query: 268 TGTPKGAVLTHGNLIS 283
           TG PKG  ++H NL+S
Sbjct: 153 TGNPKGVQISHDNLVS 168

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 10/153 (6%)

Query: 441 EGYGMTETSCIISAIDKGDNLSGH-VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVR 499
           E YG +E S + + +D+      + VG P    ++++ +        E Q    G + V+
Sbjct: 284 EFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAG----EEVQKGEIGTVYVK 339

Query: 500 GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPE 559
            P  F GY          ++ DGW+   D+G     G + I+ R+KN+  L  G  + PE
Sbjct: 340 SPQFFMGY-IIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI-LFGGINIFPE 397

Query: 560 KIENVYAKCKFVLQCFIYG--DSF-NSCLVAIV 589
           +IE+V  +   V +  + G  DS+     VAI+
Sbjct: 398 EIESVLHEHPAVDEIVVIGVPDSYWGEKPVAII 430

Length = 487

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 25/132 (18%)

Query: 413 VRFMGSGAS-PLSPDVMDFLKVCFGCQVMEGYGMTETSCI----------ISAIDKGDNL 461
           +R +G G S  ++ DV  F++   G +  + YG++ET C           I  I+     
Sbjct: 288 LRLVGYGGSRAIAADVR-FIEAT-GVRTAQVYGLSETGCTALCLPTDDGSIVKIE----- 340

Query: 462 SGHVGSPNPACEIKLVDV----PEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREV 517
           +G VG P P  ++ L       P             G + ++ P    GY+ N  +T EV
Sbjct: 341 AGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASF--GTLWIKSPANMLGYWNNPERTAEV 398

Query: 518 IDGDGWLHTGDI 529
           +  DGW++TGD+
Sbjct: 399 L-IDGWVNTGDL 409

Length = 540

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 47.6 bits (114), Expect = 2e-05
 Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 21/192 (10%)

Query: 416 MGSGASPLSPDVMD-FLKVCFGCQVMEGYGMTET-SCIISAIDKGDNLSGHVGSP--NPA 471
           + SG +  SP V +  L++     + +  G +ET       + KG   + H G P     
Sbjct: 301 IASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG---AVHTGGPRFTIG 357

Query: 472 CEIKLVDVPEMNYTSEDQP--HPRGEICVRGPIVFQGYYKNEVQTRE---VIDGDGWLHT 526
               ++D       +  +P     G I  RG I   GYYK+  +T E    IDG  +   
Sbjct: 358 PRTVVLDED----GNPVEPGSGEIGWIARRGHIP-LGYYKDPEKTAETFPTIDGVRYAIP 412

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNS 583
           GD       G + ++ R         GE V PE++E        V    + G   + +  
Sbjct: 413 GDRARVEADGTITLLGRGSVCINTG-GEKVFPEEVEEALKAHPDVADALVVGVPDERWGQ 471

Query: 584 CLVAIVAVDPDV 595
            +VA+V +    
Sbjct: 472 EVVAVVQLREGA 483

Length = 533

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 48.0 bits (114), Expect = 2e-05
 Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 38/179 (21%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI----VDHACSAYSYISVPLY 169
           + Y E++     +   L+  G+   V +G+ +    E ++    +  A  AY    VPL 
Sbjct: 537 LDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAY----VPLD 592

Query: 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHL-PSLPST 228
                + + Y++  + ++           LLS                   HL   LP  
Sbjct: 593 PEYPAERLAYMLEDSGVQ----------LLLS-----------------QSHLGRKLPLA 625

Query: 229 SGVKLISYLQ--LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
           +GV+++   +     +G S   P     PE++A + YTSG+TG PKGA   H  L + +
Sbjct: 626 AGVQVLDLDRPAAWLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRL 684

Length = 5163

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 17/32 (53%), Positives = 18/32 (56%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVA 286
            +D A I YTSGTTG PKG V TH       A
Sbjct: 99  KDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAA 130

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 13/80 (16%)

Query: 237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY- 295
           L L S   S  +P   P     A + YTSG+T TP G +++H N+I+N     LM  ++ 
Sbjct: 144 LDLDSPRGSDARPRDLP---STAYLQYTSGSTRTPAGVMVSHRNVIANFE--QLMSDYFG 198

Query: 296 ------PSDIYM-SYLPLAH 308
                 P D  + S+LP  H
Sbjct: 199 DTGGVPPPDTTVVSWLPFYH 218

Length = 578

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 50/195 (25%), Positives = 76/195 (38%), Gaps = 32/195 (16%)

Query: 412 RVRFM-GSGASPLSPDVMDFLKVCFGCQVM-EGYGMTETSCIISAIDKGDNLSGHVGSPN 469
           +VR   G+G   L PD+ +  +  F    + E Y  TE     +  + G   +G +G   
Sbjct: 203 KVRVAYGNG---LRPDIWERFRERFNVPEIGEFYAATEGVFAFTNHNVGPFTAGAIGFSG 259

Query: 470 PACEIKLVD--VPEMNYTSEDQP--HPRGEICVRGPI----------------VFQGYYK 509
                 L +           D P   P+   CVR P+                +FQGY K
Sbjct: 260 LIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVRFKNRELFQGYLK 319

Query: 510 NEVQT-----REVID-GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
           NE  T     R+V   GD W  TGD+      GR   +DR  + F+  + E V+  ++ +
Sbjct: 320 NEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRW-KSENVSTGEVAD 378

Query: 564 VYAKCKFVLQCFIYG 578
           V      V +  +YG
Sbjct: 379 VLGAIPSVAEANVYG 393

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 46.0 bits (110), Expect = 4e-05
 Identities = 51/200 (25%), Positives = 79/200 (39%), Gaps = 29/200 (14%)

Query: 423 LSPD-VMDFLKVCFGCQVMEGYGMTETSCIISA--IDKGDNLSGHV--GSPNPACEIKLV 477
           LSP  V   L  C G +++ GYG TE +   +   I + D  +  +  G P P   + ++
Sbjct: 252 LSPAHVRRVLAACPGLRLINGYGPTENTTFSTCHVITRLDEAADSIPIGRPIPNTTVYIL 311

Query: 478 DVPEMNYTSEDQPHP---RGEICVRGPIVFQGYYKNEVQTREV------IDGDGWLHTGD 528
           D        E QP P    GE+ V G  +  GY      T E         G+    TGD
Sbjct: 312 D-------EEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGD 364

Query: 529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSC---L 585
           +  W P G ++ + R     K+ +G  +   +IE    +   V +  +      +    L
Sbjct: 365 LARWRPDGNIEFLGRIDRQVKI-RGFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRL 423

Query: 586 VAIV----AVDPDVLKDWAA 601
           VA V    A+D   L+   A
Sbjct: 424 VAYVVARGALDAAELRAHLA 443

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 46.4 bits (111), Expect = 4e-05
 Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 249 PFCPPKP---EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY-PSDIY 300
           P+C P+P   ED   I YTSG+TG PKG V T G  +   A     V    P D+Y
Sbjct: 215 PYCEPEPMDAEDPLFILYTSGSTGKPKGVVHTTGGYLVYAATTFKYVFDIHPDDVY 270

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 9/157 (5%)

Query: 412 RVRFMGSGASPLSPDVMD-FLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNP 470
            +R + S  +  SP+V    L++     +++  G +ET    S++ +    S   G    
Sbjct: 136 SLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGASA-TGKFEL 194

Query: 471 ACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTRE---VIDGDGWLHTG 527
             +  ++D  + +          G I   G +   GYYK+  +T +    IDG  +   G
Sbjct: 195 GPDTVVLD-EDGSEVPPGSGEV-GWIARGGRVP-LGYYKDPEKTAKTFREIDGVRYAVPG 251

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           D       G + ++ R         GE V PE++E  
Sbjct: 252 DFARVEADGTITLLGRGSVCINTG-GEKVFPEEVEEA 287

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 253 PKPEDIATICYTSGTTGTPKGAVLTHGNLIS 283
           P  +D+A +  TSGTTGTPKGA+LT   L +
Sbjct: 32  PIDDDVALVVATSGTTGTPKGAMLTAAALTA 62

Length = 358

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 8/111 (7%)

Query: 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKN-EVQTREVIDGDG-- 522
           G   P   + +VD   +    +++    GEI   GP +  GY++N E   +  ++ DG  
Sbjct: 373 GRSQPGHAVLIVDPQSLEVLGDNRV---GEIWASGPSIAHGYWRNPEASAKTFVEHDGRT 429

Query: 523 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQ 573
           WL TGD+G +L  G L +  R K++  + +G  + P+ IE    +   V++
Sbjct: 430 WLRTGDLG-FLRDGELFVTGRLKDML-IVRGHNLYPQDIEKTVEREVEVVR 478

Length = 4334

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIY 300
           PED A + +TSGTTG PKG +  H  ++++ A    ++   P D+Y
Sbjct: 88  PEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY 133

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 37/195 (18%), Positives = 57/195 (29%), Gaps = 63/195 (32%)

Query: 115 TYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           TY E           L     +Q G  + +   N  E++ +  A  +             
Sbjct: 7   TYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWS------------- 53

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
                          I  +P  +N  LS     P +H +                SG K 
Sbjct: 54  ---------------IGAVPAFINYNLS---GDPLIHCL--------------KISGAKF 81

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
           +                    P+D A + YTSGTTG PKG  ++    +      S  + 
Sbjct: 82  VIV-----------------DPDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLN 124

Query: 294 FYPSDIYMSYLPLAH 308
               D   + +PL H
Sbjct: 125 LQFPDRTYTCMPLYH 139

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 249 PFCPPKP---EDIATICYTSGTTGTPKGAV-LTHGNLISNVAGFSLMVQFYPSDIY 300
            +C P+P   ED   I YTSG+TG PKG +  T G L+        +      DI+
Sbjct: 226 AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIF 281

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 86/430 (20%), Positives = 154/430 (35%), Gaps = 92/430 (21%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +T+G++      +G  L   GL  G R+ L L + P+ + +  AC A             
Sbjct: 31  VTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARG----------- 79

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGG-KDEHLPSLPSTSGVK 232
                       + A    P+      +  +      L+V     +D   PS       +
Sbjct: 80  ------------VMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS-------R 120

Query: 233 LISYLQLQSQGC-SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL- 290
           +    +L S+    +P  + P   + +A   YTSGTTG PK A+  H + ++ V      
Sbjct: 121 VAEAAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRK 180

Query: 291 MVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDN-LKLMDDLAVLKPTIF-P 348
            ++  P D  +    +   Y   N   SV++ +A G     N   +  + A +    F P
Sbjct: 181 ALRLTPEDTGLCSARMYFAYGLGN---SVWFPLATGGSAVINSAPVTPEAAAILSARFGP 237

Query: 349 SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER 408
           SV       +A + ++              ++ S +  + +G+             + ER
Sbjct: 238 SVLYGVPNFFARVIDSCSPD----------SFRSLRCVVSAGEALEL--------GLAER 279

Query: 409 LGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSP 468
           L   + F G                  G  +++G G TE      +    +   G +G  
Sbjct: 280 L---MEFFG------------------GIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRV 318

Query: 469 NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKN-----------EVQTREV 517
            P  EI++V  P+    +   P   G++ VRGP + +GY+             + + R  
Sbjct: 319 LPPYEIRVV-APD---GTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGWLDTRDRVC 374

Query: 518 IDGDGWLHTG 527
           ID DGW+   
Sbjct: 375 IDSDGWVTYR 384

Length = 705

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 44.2 bits (104), Expect = 3e-04
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 33/198 (16%)

Query: 114  MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE----WLIVDHACSAYSYISVPLY 169
            ++Y E+ +    +   L   G+   VR+ +      E     L V  A  AY    VPL 
Sbjct: 2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAY----VPL- 2083

Query: 170  DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
            D   P         AE              L+++ E     L++      E LP     +
Sbjct: 2084 DPNYP---------AE-------------RLAYMLEDSGAALLLTQRHLLERLPLPAGVA 2121

Query: 230  GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS 289
             + L    +      ++P        E++A + YTSG+TG PKG  ++HG L+++     
Sbjct: 2122 RLPLDRDAEWADYPDTAPAV--QLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAG 2179

Query: 290  LMVQFYPSDIYMSYLPLA 307
               +  P+D  + ++  +
Sbjct: 2180 ERYELSPADCELQFMSFS 2197

Length = 5163

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 43.8 bits (104), Expect = 3e-04
 Identities = 77/351 (21%), Positives = 128/351 (36%), Gaps = 92/351 (26%)

Query: 261 ICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---------------VQFYPSDI------ 299
           I YTSGTTG PKG V   G       G+++                V +  SD+      
Sbjct: 225 ILYTSGTTGKPKGVVRDTG-------GYAVALKWSMRNIYGIKPGDVFWAASDVGWVVGH 277

Query: 300 -YMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIY 358
            Y+ Y PL H             G     Y+G            KP   P     Y R+ 
Sbjct: 278 SYIVYGPLLH-------------GATTVLYEG------------KPVGTPD-AGAYWRVI 311

Query: 359 AGITNAVKASGTLREKLFTAAYNSKKQAI--VSGQTPSKMWDRLVFNKIRERLGGRVRFM 416
                 V A       LFTA       AI  +  Q P   +       I++     +R +
Sbjct: 312 E--EYGVNA-------LFTAP-----TAIRAIRKQDPDGEY-------IKKYDLSSLRAL 350

Query: 417 GSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPN-PAC-- 472
                 L    +++++   G  V++ +  TET   I+A   G + L    GSP  P    
Sbjct: 351 FLAGERLDSPTLEWIEKTLGVPVIDHWWQTETGWPITANCVGLELLPIKPGSPGKPVPGY 410

Query: 473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPI---VFQGYYKNEVQTREVI--DGDGWLHTG 527
           +++++D        E  P   G I ++ P+        + ++ + +++      G+  TG
Sbjct: 411 DVQVLD-ETGE---ELGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTG 466

Query: 528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
           D G     G L ++ R  ++  +A G  ++  ++E    K   V +C + G
Sbjct: 467 DSGYKDEDGYLFVMGRTDDVINVA-GHRLSTGEMEESVLKHPDVAECAVVG 516

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 43.8 bits (104), Expect = 3e-04
 Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 24/206 (11%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYI--SVPLYDT 171
           +++ E+ +    + + L   G++ G R+  YL N PE +I   A ++   I  S      
Sbjct: 87  ISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSC----- 141

Query: 172 LGPD-AVKYVVNH-AEIEA--IFCIP---------QTLNTLLSFISEIPSVHLIVVVGGK 218
             PD  V+ V++   +IE   +F +               +   +  +PS+  +VVV   
Sbjct: 142 -SPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVVPYL 200

Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
                          + +     +  ++P  F     +    I Y+SGTTG PK  V   
Sbjct: 201 SSDAQPAALKFSALTLLWSLAGDR--AAPLEFERLPFDHPLWILYSSGTTGLPKCIVHGA 258

Query: 279 GN-LISNVAGFSLMVQFYPSDIYMSY 303
           G  L+ ++    L     P D    Y
Sbjct: 259 GGTLLQHLKEHGLHCDLRPGDRLFYY 284

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 55/202 (27%), Positives = 84/202 (41%), Gaps = 29/202 (14%)

Query: 413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSG---HVGSPN 469
           +R + S    L P +       +G  +  GYG TE    I A+    +L      VG P 
Sbjct: 294 LRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVG--IGALATPADLRDAPETVGKPV 351

Query: 470 PACEIKLVDVPEMNYTSEDQP-HPR--GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHT 526
             C ++++D         ++P  PR  G I V G +    Y   +   + V+DG     T
Sbjct: 352 AGCPVRILD-------RNNRPVGPRVTGRIFVGGELAGTRY--TDGGGKAVVDG--MTST 400

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNS 583
           GD+G     GRL I+ R+ ++  ++ GE V P  +EN  A    V    + G   + F  
Sbjct: 401 GDMGYLDNAGRLFIVGREDDMI-ISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGH 459

Query: 584 CLVAIVA------VDPDVLKDW 599
            L A V       VD   L+D+
Sbjct: 460 RLAAFVVLHPGSGVDAAQLRDY 481

Length = 516

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLIS 283
           P+D+A + YTSG+TG PKG  + H N  +
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEHRNAAA 132

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH 308
               + IA + YTSG+T  P G  +TH NL +NV      ++    D  +S+LP  H
Sbjct: 176 EANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFH 232

Length = 631

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 14/19 (73%), Positives = 16/19 (84%)

Query: 263 YTSGTTGTPKGAVLTHGNL 281
           +TSGTTG PK AVLTHG +
Sbjct: 170 FTSGTTGRPKAAVLTHGQM 188

Length = 528

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 222  LPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNL 281
            L  LP+ +G   ++  +L   G S   P      E++A + YTSG+TG PKG  + HG L
Sbjct: 3203 LEQLPAPAGDTALTLDRLDLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGAL 3262

Length = 3956

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 17/71 (23%), Positives = 32/71 (45%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY E+        + L   G+  G R+ L L + PE +    AC     ++V L   L P
Sbjct: 12  TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71

Query: 175 DAVKYVVNHAE 185
             ++++++ + 
Sbjct: 72  QDLEHILDDSG 82

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 8/119 (6%)

Query: 413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCI-ISAIDKGDNLSGHVGSPNPA 471
           +R + S   PL+P+V+ +    FG  + + + MTET  I I+     D   G +G P P 
Sbjct: 325 LRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPG 384

Query: 472 CEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVIDGDGWLHTGD 528
            E  +VD    +  +E  P+  G + ++   P + +G + N  +      G  W  +GD
Sbjct: 385 IEAAIVD----DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAG-DWYVSGD 438

Length = 570

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 26/86 (30%), Positives = 36/86 (41%)

Query: 222  LPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNL 281
            L  LP   GV  I+   L      S  P      +++A + YTSG+TG PKG   TH  L
Sbjct: 1239 LERLPQAEGVSAIALDSLHLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAAL 1298

Query: 282  ISNVAGFSLMVQFYPSDIYMSYLPLA 307
               +           SD+ M   P++
Sbjct: 1299 AERLQWMQATYALDDSDVLMQKAPIS 1324

Length = 4334

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 39/187 (20%)

Query: 443 YGMTETSCIISA-------IDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP--- 492
           YG TE +  +++       +D+   L   +G   P   + ++D        E +P P   
Sbjct: 291 YGPTEATVAVTSVKITQEILDQYPRLP--IGFAKPDMNLFIMD-------EEGEPLPEGE 341

Query: 493 RGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIG-----LWLPGGRLKIIDRK 544
           +GEI + GP V +GY  N  +T E     +G     TGD G          GR   +D +
Sbjct: 342 KGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDGQLFYQGR---LDFQ 398

Query: 545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY-----GDSFNSCLVAIVAVDPDVLKDW 599
               KL  G  +  E IE    +  ++    +             + AIV    D  K++
Sbjct: 399 ---IKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEF 454

Query: 600 AASQGIK 606
             ++ IK
Sbjct: 455 QLTKAIK 461

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 48/207 (23%), Positives = 72/207 (34%), Gaps = 31/207 (14%)

Query: 115 TYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPE----WLIVDH-----ACSAYSYI 164
           TY EV     ++   LL H GL+ G  + L L N P     WL +       A    +  
Sbjct: 5   TYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIR 64

Query: 165 SVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPS 224
           S  L         + +V   E+         L  +   +  + ++ + V           
Sbjct: 65  SGSLLHCFRCCGARVLVADPEL---------LEAVEEILPALRAMGVRVFYLSHTSP--- 112

Query: 225 LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATIC---YTSGTTGTPKGAVLTHGNL 281
                GV  IS L         P P        I +     YTSGTTG PK A ++H  +
Sbjct: 113 ---PEGV--ISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRV 167

Query: 282 ISNVAGFSLMVQFYPSDIYMSYLPLAH 308
           +   +G   +      D+  + LPL H
Sbjct: 168 LQ-CSGMLSLCGVTADDVVYTTLPLYH 193

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 17/79 (21%), Positives = 37/79 (46%)

Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           + +TYGE+ A    +   LL  GL  G R+ +      E++++  A      ++VPL  +
Sbjct: 10  RSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPS 69

Query: 172 LGPDAVKYVVNHAEIEAIF 190
                + Y+++ ++   + 
Sbjct: 70  YPAAELAYILSDSQPSLLV 88

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 51/239 (21%), Positives = 78/239 (32%), Gaps = 66/239 (27%)

Query: 220 EHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHG 279
           E L  LP T+   L                F  PK E+I  I  +SGTTG P     T  
Sbjct: 63  EDLAKLPFTTKDDLRENYPFG--------DFAVPK-EEIVRIHASSGTTGKPTVFGYTAK 113

Query: 280 NLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGV-----AVGFYQG-DNL 333
           +           ++ +   +  S         R    V   YG       +G + G + +
Sbjct: 114 D-----------IERWAELLARSLYS---AGVRKGDKVQNAYGYGLFTGGLGLHYGAERI 159

Query: 334 KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP 393
                      T+ P        I  G T          E+      + K   I +  TP
Sbjct: 160 GA---------TVIP--------ISGGNT----------ERQLELMKDFKPTVIAA--TP 190

Query: 394 SKMWDRLVFNKIRERLGGR-----VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTE 447
           S +   L   +  E  G       ++    GA P S ++   ++  FGC+  + YG+TE
Sbjct: 191 SYL---LYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTE 246

Length = 438

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIY-MSYLPLAH 308
               +D++ + YTSG+T  P G  +TH  + +N+    L +     + + +S+LPL H
Sbjct: 189 ELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYH 246

Length = 612

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 47/173 (27%)

Query: 413 VRFMGSGASPLSPDV----MDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS--GHVG 466
           +R     A+P   +V    +D+    +G  + E Y  +E    ++ I   D L+  G VG
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDW----WGPIIHEYYASSE-GGGVTVITSEDWLAHPGSVG 318

Query: 467 SPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQG------YYKNEVQTREVIDG 520
                 E++++D        +    P GEI   G + F+       Y+ +  +T    + 
Sbjct: 319 KA-VLGEVRILD-------EDGNELPPGEI---GTVYFEMDGYPFEYHNDPEKTAAARNP 367

Query: 521 DGWLHTGDIGLWLPG-GRLKIIDRKK--------NIFKLAQGEYVAPEKIENV 564
            GW+  GD+G +L   G L + DRK         NI+         P++IEN+
Sbjct: 368 HGWVTVGDVG-YLDEDGYLYLTDRKSDMIISGGVNIY---------PQEIENL 410

Length = 502

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 54/218 (24%), Positives = 80/218 (36%), Gaps = 56/218 (25%)

Query: 109 GGYKWMTYGEV---SAARKEIGSGLL-----FHGLQKGVRIGLYLINRPEWLIVDHACSA 160
           G   W T+ EV   +AAR      L       H       +G+ L N PE L    A + 
Sbjct: 23  GDRTW-TWREVLAEAAARAAALIALADPDRPLH-------VGVLLGNTPEMLFWLAAAAL 74

Query: 161 YSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDE 220
             Y+ V L  T    A+   +  A+ +                       L+V      E
Sbjct: 75  GGYVLVGLNTTRRGAALAADIRRADCQ-----------------------LLVT---DAE 108

Query: 221 HLPSLPS--TSGVKLI-----SYLQ-LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPK 272
           H P L      GV+++     +Y + + + G  +P         D   + +TSGTTG PK
Sbjct: 109 HRPLLDGLDLPGVRVLDVDTPAYAELVAAAGALTPHR--EVDAMDPFMLIFTSGTTGAPK 166

Query: 273 GAVLTHGNLISNVAGFSLMVQF--YPSDIYMSYLPLAH 308
               +HG L    AG +L  +F     D+    +PL H
Sbjct: 167 AVRCSHGRLA--FAGRALTERFGLTRDDVCYVSMPLFH 202

Length = 540

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 40.1 bits (95), Expect = 0.004
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 251 CPPKP---EDIATICYTSGTTGTPKGAVLTHG 279
           C P+P   ED   I YTSG+TG PKG + T G
Sbjct: 237 CEPEPMDAEDPLFILYTSGSTGKPKGVLHTTG 268

Length = 637

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	666
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.97
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.97
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.95
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.94
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.91
PRK09188	365	serine/threonine protein kinase; Provisional	99.76
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.71
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.67
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.87
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.79
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.26
PLN02249	597	indole-3-acetic acid-amido synthetase	98.21
PLN02247	606	indole-3-acetic acid-amido synthetase	97.62
PLN02620	612	indole-3-acetic acid-amido synthetase	97.44
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	94.37
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	93.63
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	87.99
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	87.11

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-100  Score=807.74  Aligned_cols=545  Identities=50%  Similarity=0.869  Sum_probs=501.4

Q ss_pred             CccccCCCCC-CcccccCCCCCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCC
Q 005991           56 WNVYRSARSP-LTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHG  134 (666)
Q Consensus        56 ~~~~r~~~~~-~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~g  134 (666)
                      ..+||+...+ ..+.+.  ...+..|+++.|.+.+..+|+.++|+.+...++ .++|+|+||.|..+++.++|++|+++|
T Consensus        53 ~~~~~s~~~~~~~~~~~--~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~-~~~~~~~tY~q~~e~~~~~~~~l~~lG  129 (691)
T KOG1256|consen   53 DGSRRSAVLPREELFSC--PFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDG-KGPYEWLTYKQVYERAENLGSGLRKLG  129 (691)
T ss_pred             CCceeeeeccCCCCCCC--CCCCcccHHHHhhcchhccCCCCceeEEecccC-CCCcEEEEHHHHHHHHHHHHHHHHHhC
Confidence            4677777654 233222  246889999999999999999999999965443 478999999999999999999999999


Q ss_pred             CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEc-cccHHHHHHhhhc--CCCceE
Q 005991          135 LQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCI-PQTLNTLLSFISE--IPSVHL  211 (666)
Q Consensus       135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~--~~~l~~  211 (666)
                      +++++.|||++-|++||+++.+||..+|+++|||+++++++++.+|++++++.++|++ ++.+..+.+....  +|.++.
T Consensus       130 ~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~  209 (691)
T KOG1256|consen  130 VKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKA  209 (691)
T ss_pred             CCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCcccee
Confidence            9999999999999999999999999999999999999999999999999999999999 6677888877763  889999


Q ss_pred             EEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCCCCCCC-CCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc
Q 005991          212 IVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPF-CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL  290 (666)
Q Consensus       212 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~  290 (666)
                      +|.+++.....+......++.+++|+++++.|....... .++.|+|+|.|+|||||||+|||||+||+|+++.+.....
T Consensus       210 iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~  289 (691)
T KOG1256|consen  210 IIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFF  289 (691)
T ss_pred             EEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhh
Confidence            999999988888888889999999999999997766655 4889999999999999999999999999999986653221


Q ss_pred             c------cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHH
Q 005991          291 M------VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNA  364 (666)
Q Consensus       291 ~------~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  364 (666)
                      .      ......|+++++|||+|++++......++.|++++|+++|+..+.+++++.+||.+.+||++|+++++.+++.
T Consensus       290 ~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~  369 (691)
T KOG1256|consen  290 LSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQ  369 (691)
T ss_pred             hhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHH
Confidence            1      1223479999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             HhhcchHHHHHHHHHHHHHH-HHHHcCCCC--ChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCcccc
Q 005991          365 VKASGTLREKLFTAAYNSKK-QAIVSGQTP--SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVME  441 (666)
Q Consensus       365 ~~~~~~~~~~l~~~~~~~k~-~~~~~~~~~--~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~  441 (666)
                      +.+++.+++++|+.|+..|. ..+..|...  ..+||+++|+|+++.+|+++|.+++|++|+++++..+++..+||+|++
T Consensus       370 ~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~e  449 (691)
T KOG1256|consen  370 VQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLE  449 (691)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeee
Confidence            99999999999999999999 677787775  699999999999999999999999999999999999999999999999


Q ss_pred             CcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCC
Q 005991          442 GYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGD  521 (666)
Q Consensus       442 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~  521 (666)
                      +||+|||++.++...+.+...+++|.|+|+++++++|++++++.+.+.   .|||||||++||.|||+||+.|+++||.|
T Consensus       450 GYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~---~GEIcirG~~Vf~GYyK~p~~T~e~ideD  526 (691)
T KOG1256|consen  450 GYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGS---KGEICVRGPNVFMGYYKDPEKTAEAIDED  526 (691)
T ss_pred             cccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcCCC---cceEEEecchhceeccCChHHHhhhhccc
Confidence            999999997777777777799999999999999999999999999987   89999999999999999999999999999


Q ss_pred             CeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChhHHHHHHH
Q 005991          522 GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAA  601 (666)
Q Consensus       522 gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~  601 (666)
                      ||+||||+|+|+++|.|+|+||+||+||+++||+|.|+.||+++.+.+.|.+++|+|++.+.+++|+|+|+.+.++.|+.
T Consensus       527 GWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~  606 (691)
T KOG1256|consen  527 GWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAA  606 (691)
T ss_pred             cccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HcCCC
Q 005991          602 SQGIK  606 (666)
Q Consensus       602 ~~~l~  606 (666)
                      ++++.
T Consensus       607 ~~~~~  611 (691)
T KOG1256|consen  607 KDGVK  611 (691)
T ss_pred             HccCc
Confidence            77665

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=5.6e-97  Score=743.39  Aligned_cols=594  Identities=38%  Similarity=0.609  Sum_probs=528.7

Q ss_pred             CceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCCCceEEEEEe--------ccCc------
Q 005991           42 GYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVR--------VDGT------  107 (666)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~--------~~~~------  107 (666)
                      ++.|++.....+.++.+|||....++|.+.  +.+...|++++|++.++++.++.++++|+.        .||+      
T Consensus         6 ~~~V~~~~~~n~~e~~p~Rnv~~~~~L~~~--~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~   83 (678)
T KOG1180|consen    6 KYRVKAKPAANEHETAPYRNVRSFDGLVSP--PNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYE   83 (678)
T ss_pred             hcccccCCCCCCCCCccccccccCCCccCC--CCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEe
Confidence            456666666566778899999876667754  567899999999999999999999999865        2443      


Q ss_pred             cCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCE-EEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCc
Q 005991          108 VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVR-IGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEI  186 (666)
Q Consensus       108 ~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~-V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~  186 (666)
                      .++|.|+||.|+.+++.++|++|.+.|++++++ ++|+++.+.+|+++++||++.+..+|.++.+++.+.+.|-|+++++
T Consensus        84 Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~  163 (678)
T KOG1180|consen   84 LGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETES  163 (678)
T ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccc
Confidence            678999999999999999999999999998776 9999999999999999999999999999999999999999999999


Q ss_pred             eEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCC----CCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEE
Q 005991          187 EAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPS----LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATIC  262 (666)
Q Consensus       187 ~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~  262 (666)
                      +.+||+.+.++++...+..++.+++||.++..+.....    .....++.+++|+++++.|.....++.++.|+|+|+||
T Consensus       164 ~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IM  243 (678)
T KOG1180|consen  164 TAIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIM  243 (678)
T ss_pred             eEEEeCHHHHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEE
Confidence            99999999999999988999999999999964422221    12346789999999999999877677777999999999


Q ss_pred             eccCCCCCccEEEecHHHHHHHHhhccccc-ccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCCHHHHH-----
Q 005991          263 YTSGTTGTPKGAVLTHGNLISNVAGFSLMV-QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLM-----  336 (666)
Q Consensus       263 ~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----  336 (666)
                      |||||||.||||+++|+|+++.+.+..... .+++.|+++.++||+|++++.+.+.+++.|+++++-+  +..+.     
T Consensus       244 YTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S--~~TLtdts~k  321 (678)
T KOG1180|consen  244 YTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSS--PLTLTDTSSK  321 (678)
T ss_pred             EcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCC--cceecccchh
Confidence            999999999999999999999998877664 6889999999999999999999999999999999854  22222     


Q ss_pred             ------HHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhC
Q 005991          337 ------DDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLG  410 (666)
Q Consensus       337 ------~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~  410 (666)
                            -++..+|||++.+||.+|+++.+++...+...+.+.+.+|..++..|...+......+.++|.++|+++|..+|
T Consensus       322 i~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lG  401 (678)
T KOG1180|consen  322 IKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLG  401 (678)
T ss_pred             hccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhC
Confidence                  26788999999999999999999999999999999999999999999999988888889999999999999999


Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCCCCCCC
Q 005991          411 GRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQP  490 (666)
Q Consensus       411 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~  490 (666)
                      +++|++++||+|++++.++|+..+++|++.++||+||+++..+...+.+...+.+|.|+++++++++|.++++|...+.|
T Consensus       402 G~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P  481 (678)
T KOG1180|consen  402 GNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP  481 (678)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCccEEEEeCCCcCccccCChhhhhhccCC-CC--eeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhc
Q 005991          491 HPRGEICVRGPIVFQGYYKNEVQTREVIDG-DG--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAK  567 (666)
Q Consensus       491 ~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~-~g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~  567 (666)
                       |+|||||+|+++..|||+||+.|++.|+. ||  ||+|||+|++.+||+|.|+||+||++|+.+||+|+++.||++|+.
T Consensus       482 -PrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s  560 (678)
T KOG1180|consen  482 -PRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRS  560 (678)
T ss_pred             -CCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhc
Confidence             89999999999999999999999999977 88  999999999999999999999999999999999999999999999


Q ss_pred             CcCcceEEEEEeCCCCeEEEEEEcChhHHHHHHHHcCCCc--------------------------ccccccccCcchhH
Q 005991          568 CKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKV--------------------------IYCFSFRANSHVIF  621 (666)
Q Consensus       568 ~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~~l~~--------------------------~~~~~~~~p~~i~~  621 (666)
                      .|.|...+|++++...++||+|||+...+..++.+.|+..                          .-+..+.+|..|++
T Consensus       561 ~p~V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l  640 (678)
T KOG1180|consen  561 SPYVDNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVL  640 (678)
T ss_pred             CcchhheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEe
Confidence            9999999999999999999999998644444444444331                          01137788888888


Q ss_pred             HHHHH-------HHhhhhhhhhhccc
Q 005991          622 IALIH-------NLCQLYSSKELFRS  640 (666)
Q Consensus       622 v~~~~-------~~~gK~~r~~l~~~  640 (666)
                      .++|=       +..-|+.|+.++..
T Consensus       641 ~~e~WTPenGlvT~A~KLKRk~I~~~  666 (678)
T KOG1180|consen  641 SPEPWTPENGLVTAALKLKRKEILAA  666 (678)
T ss_pred             cCCCcCCCccccHHHHHhhHHHHHHH
Confidence            87543       33356666665543

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.1e-90  Score=787.95  Aligned_cols=603  Identities=77%  Similarity=1.277  Sum_probs=526.2

Q ss_pred             ccCCCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHH
Q 005991           38 VQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYG  117 (666)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~  117 (666)
                      .+...||++++++.+...+.+||+...+.++.+.++..+...|++++|+++++++||++|++++...++..+.++++||+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~   82 (651)
T PLN02736          3 VHEQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYG   82 (651)
T ss_pred             ccccCcceeCCCCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHH
Confidence            34567999999999999999999998888888777777888999999999999999999997652223333457889999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHH
Q 005991          118 EVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN  197 (666)
Q Consensus       118 el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~  197 (666)
                      ||+++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++||+++.++++++.+++++++++++|++.+..+
T Consensus        83 el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~  162 (651)
T PLN02736         83 EAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLN  162 (651)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             HHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEec
Q 005991          198 TLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLT  277 (666)
Q Consensus       198 ~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~t  277 (666)
                      .+......++.++.++.++.............+....+|+++...+.....+.....++|+++|+|||||||.||||++|
T Consensus       163 ~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~ls  242 (651)
T PLN02736        163 TLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLT  242 (651)
T ss_pred             HHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEe
Confidence            77777777788888887754322111111123456678888876554332233345789999999999999999999999


Q ss_pred             HHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCCHHHHHHHHHhhcCeEEeechHHHHHH
Q 005991          278 HGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRI  357 (666)
Q Consensus       278 h~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  357 (666)
                      |+++++.+.+....+++.++|++++++|++|++++...+.+++.|++++++++++..+++.|++++||+++++|++|..+
T Consensus       243 h~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l  322 (651)
T PLN02736        243 HGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRI  322 (651)
T ss_pred             cHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHH
Confidence            99999988888777888999999999999999999888889999999999989999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCC
Q 005991          358 YAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC  437 (666)
Q Consensus       358 ~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~  437 (666)
                      ++.+...+...+.+++.++..++..+...+..+..+...++++++++++..+|+++|.+++||+++++++.++++..+|+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~  402 (651)
T PLN02736        323 YDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGG  402 (651)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            99998889999999999999999988877777777777889999999999999999999999999999999999988999


Q ss_pred             ccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhc
Q 005991          438 QVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREV  517 (666)
Q Consensus       438 ~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~  517 (666)
                      +++++||+||+++.++.....+...+++|+|+|+++++|+|.+++.+...+.+++.|||+|+||++|.|||++|+.|++.
T Consensus       403 ~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~  482 (651)
T PLN02736        403 RVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREV  482 (651)
T ss_pred             CeEEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhh
Confidence            99999999999877766665566778999999999999999766665556666678999999999999999999999999


Q ss_pred             cCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChhHHH
Q 005991          518 IDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLK  597 (666)
Q Consensus       518 ~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~  597 (666)
                      |+.||||+|||+|++|+||+|+|+||+||+||+++|++|+|.|||++|.+||.|.+|+|+|+...+.++|+|+++++.+.
T Consensus       483 ~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~  562 (651)
T PLN02736        483 IDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLK  562 (651)
T ss_pred             hccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHH
Confidence            98899999999999999999999999999999878999999999999999999999999997767899999999988777


Q ss_pred             HHHHHcCCCc--------------------------ccccccccCcchhHHHHH-------HHHhhhhhhhhhccc
Q 005991          598 DWAASQGIKV--------------------------IYCFSFRANSHVIFIALI-------HNLCQLYSSKELFRS  640 (666)
Q Consensus       598 ~~~~~~~l~~--------------------------~~~~~~~~p~~i~~v~~~-------~~~~gK~~r~~l~~~  640 (666)
                      +|++..++..                          .-...|++|++|.+++.+       .|.+||++|+++++.
T Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~  638 (651)
T PLN02736        563 AWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAY  638 (651)
T ss_pred             HHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHH
Confidence            7665444320                          013488999999999755       367799999999886

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=3.9e-87  Score=760.63  Aligned_cols=595  Identities=35%  Similarity=0.606  Sum_probs=498.9

Q ss_pred             CCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCCCceEEEEEec--------cC------
Q 005991           41 QGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRV--------DG------  106 (666)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~--------~~------  106 (666)
                      .+++++++.+..++.  +|||+... .+...  +.+...|+.++|+++++++||++|++++...        ++      
T Consensus        25 ~~~~~~~~~~~~~~~--~~r~~~~~-~~~~~--~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~   99 (696)
T PLN02387         25 KKRGVPVDVGGEPGY--AIRNARFP-ELVET--PWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKL   99 (696)
T ss_pred             ccceecCCCCCCCCC--ceecCccc-ccccc--CCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccc
Confidence            457787875544443  59999854 44433  2467889999999999999999999876321        22      


Q ss_pred             ccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCc
Q 005991          107 TVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEI  186 (666)
Q Consensus       107 ~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~  186 (666)
                      ..++|+++||+||.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++|||+++++++++.++|+++++
T Consensus       100 ~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~  179 (696)
T PLN02387        100 HLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEV  179 (696)
T ss_pred             cCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCC
Confidence            13568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCC-CCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEecc
Q 005991          187 EAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSL-PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTS  265 (666)
Q Consensus       187 ~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS  265 (666)
                      +++|++.+....+.+....++.++.++.+++........ ....++.+.+|+++...+...+.+.....++|+++|+|||
T Consensus       180 ~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTS  259 (696)
T PLN02387        180 TTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTS  259 (696)
T ss_pred             CEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecC
Confidence            999999888888877777788899999887643211100 1223456778998887665433333445789999999999


Q ss_pred             CCCCCccEEEecHHHHHHHHhhcccc-cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecC----C-----HHHH
Q 005991          266 GTTGTPKGAVLTHGNLISNVAGFSLM-VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQG----D-----NLKL  335 (666)
Q Consensus       266 GTTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~----~-----~~~~  335 (666)
                      ||||.||||++||+|+++.+...... .++.++|++++++|++|++++...+.++..|+++.+...    +     +..+
T Consensus       260 GTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~  339 (696)
T PLN02387        260 GSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGT  339 (696)
T ss_pred             CCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCc
Confidence            99999999999999999888766544 357889999999999999999887777888888876431    1     2345


Q ss_pred             HHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC-----CCCChhhhHHhhHHHHHHhC
Q 005991          336 MDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG-----QTPSKMWDRLVFNKIRERLG  410 (666)
Q Consensus       336 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~-----~~~~~~~d~~~~~~~~~~~~  410 (666)
                      ++++++++||+++++|++|.++.+.+...+...+.+++.+|..++..+...+...     ...+.++|.++|+++++.+|
T Consensus       340 ~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg  419 (696)
T PLN02387        340 KGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLG  419 (696)
T ss_pred             hhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhC
Confidence            6789999999999999999999999888888888999999999998877665321     23457899999999999999


Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCCCCCCC
Q 005991          411 GRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQP  490 (666)
Q Consensus       411 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~  490 (666)
                      +++|.+++||+++++++.++++..+|++++++||+||+++.++.....+...+++|+|+|+++++|+|.+++++...+.+
T Consensus       420 ~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~  499 (696)
T PLN02387        420 GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKP  499 (696)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCC
Confidence            99999999999999999999988889999999999999877776666666778999999999999999777777766666


Q ss_pred             CCccEEEEeCCCcCccccCChhhhhhcc--CCCC--eeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHh
Q 005991          491 HPRGEICVRGPIVFQGYYKNEVQTREVI--DGDG--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYA  566 (666)
Q Consensus       491 ~~~GEl~v~g~~v~~GY~~~~~~t~~~~--~~~g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~  566 (666)
                      ++.|||+|+||++|.|||++|+.|+++|  +.+|  ||+|||+|++|+||+|+|+||+||+||+++|++|+|++||++|.
T Consensus       500 ~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~  579 (696)
T PLN02387        500 MPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALS  579 (696)
T ss_pred             CCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHh
Confidence            6789999999999999999999999998  4445  99999999999999999999999999987899999999999999


Q ss_pred             cCcCcceEEEEEeCCCCeEEEEEEcChhHHHHHHHHcCCC--------------------------cccccccccCcchh
Q 005991          567 KCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIK--------------------------VIYCFSFRANSHVI  620 (666)
Q Consensus       567 ~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~~l~--------------------------~~~~~~~~~p~~i~  620 (666)
                      +||.|.+|+|+|++.+.+++|+|+|+++.++.|++++++.                          ...+..|++|++|.
T Consensus       580 ~~p~V~~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~  659 (696)
T PLN02387        580 VSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIK  659 (696)
T ss_pred             cCCCeeEEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEE
Confidence            9999999999999988999999999999988888766553                          11245788888888


Q ss_pred             HHHHH-------HHHhhhhhhhhhccc
Q 005991          621 FIALI-------HNLCQLYSSKELFRS  640 (666)
Q Consensus       621 ~v~~~-------~~~~gK~~r~~l~~~  640 (666)
                      +++.|       .|.+.|+.|+.+++.
T Consensus       660 l~~~~~t~~~g~lT~t~K~~R~~i~~~  686 (696)
T PLN02387        660 LLPEPWTPESGLVTAALKLKREQIRKK  686 (696)
T ss_pred             EECCCCCCCCCcCChhhhhhhHHHHHH
Confidence            87644       344468888888776

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3e-86  Score=747.44  Aligned_cols=549  Identities=24%  Similarity=0.398  Sum_probs=468.2

Q ss_pred             CCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHH
Q 005991           41 QGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVS  120 (666)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~  120 (666)
                      ..|+..++.+....++.+||.......     .+.....|+.++|.+.++++||++|+.+.   +. ...++++||+||.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~~-g~~~~~~Ty~el~   98 (746)
T PTZ00342         28 KGYSEICEKATNENESSVYCMKDHKKK-----SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---SC-GEPQNYITYGNFF   98 (746)
T ss_pred             ceeeeEecCCCCCCCCCceecCchhhc-----ccccccchHHHHHHHHHhhcCCceeEecc---CC-CCCceeeeHHHHH
Confidence            468999999999899999998765544     12356789999999999999999999753   11 1236789999999


Q ss_pred             HHHHHHHHHHHhC---CCCCC-----------CEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCc
Q 005991          121 AARKEIGSGLLFH---GLQKG-----------VRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEI  186 (666)
Q Consensus       121 ~~~~~lA~~L~~~---gv~~g-----------d~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~  186 (666)
                      +++.++|++|.++   |+++|           |+|+|+++|++||+++++||+++|++.||++++++++++.++|+++++
T Consensus        99 ~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~  178 (746)
T PTZ00342         99 KKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKL  178 (746)
T ss_pred             HHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCC
Confidence            9999999999974   99999           999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCC-----------------CC-------------------------
Q 005991          187 EAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHL-----------------PS-------------------------  224 (666)
Q Consensus       187 ~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~-----------------~~-------------------------  224 (666)
                      +++|++.+..+.+.+....+|.++.+++++......                 ..                         
T Consensus       179 ~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (746)
T PTZ00342        179 EWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPL  258 (746)
T ss_pred             CEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999888888887777888999999987532110                 00                         


Q ss_pred             ---------------CCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcc
Q 005991          225 ---------------LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS  289 (666)
Q Consensus       225 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~  289 (666)
                                     .....+....+|+++...... ..+..+.+++|+++|+|||||||.||||++||+|+++.+....
T Consensus       259 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~  337 (746)
T PTZ00342        259 EYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTT-NYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLC  337 (746)
T ss_pred             ccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhccc-CCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHh
Confidence                           000112334555665443221 1223345789999999999999999999999999998876544


Q ss_pred             ccc--ccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhh
Q 005991          290 LMV--QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKA  367 (666)
Q Consensus       290 ~~~--~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  367 (666)
                      ...  .....|++++++|++|++++...+.+++.|+++++++.++..++++|++++||++++||++|++|++.+...+..
T Consensus       338 ~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~  417 (746)
T PTZ00342        338 KHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINN  417 (746)
T ss_pred             hcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhh
Confidence            321  223568999999999999998888889999999998889999999999999999999999999999999988888


Q ss_pred             cchHHHHHHHHHHHHHHHHHHcCCCCChhhhHH--hhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCccc
Q 005991          368 SGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL--VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGM  445 (666)
Q Consensus       368 ~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~  445 (666)
                      .+.+++.+|..++..+..... + ..+.+++.+  +|+++++.+|+++|.+++||+++++++.++|+..+|++++++||+
T Consensus       418 ~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGl  495 (746)
T PTZ00342        418 LPPLKRFLVKKILSLRKSNNN-G-GFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGL  495 (746)
T ss_pred             cCHHHHHHHHHHHHHHHHhhc-C-CcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeecc
Confidence            889999999999988877532 2 244566665  799999999999999999999999999999998899999999999


Q ss_pred             chhhhhhhccCCCCCCCCCccCCc-cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCee
Q 005991          446 TETSCIISAIDKGDNLSGHVGSPN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL  524 (666)
Q Consensus       446 TE~~~~~~~~~~~~~~~~~vG~p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~  524 (666)
                      ||+++.++...+.+...+++|+|+ |+++++|+|.++.....   +++.|||+++||++|.|||++|+.|+++|+.||||
T Consensus       496 TEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~---~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~  572 (746)
T PTZ00342        496 TETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATD---TLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYF  572 (746)
T ss_pred             CcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCC---CCCceEEEEecCcccccccCChhhhhhhcCcCCcc
Confidence            999877776666667789999998 99999999865433222   22479999999999999999999999999889999


Q ss_pred             ecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChhHHHHHHHHcC
Q 005991          525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQG  604 (666)
Q Consensus       525 ~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~~  604 (666)
                      ||||+|++|+||+|+|+||+||+||+++|++|+|++||++|.+||.|.+|+|+|++...+++|+|+|+++.+.+|+++.+
T Consensus       573 ~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~  652 (746)
T PTZ00342        573 KTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDN  652 (746)
T ss_pred             cCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcC
Confidence            99999999999999999999999998899999999999999999999999999987677999999999999999998754

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=6.8e-86  Score=746.76  Aligned_cols=581  Identities=38%  Similarity=0.666  Sum_probs=470.9

Q ss_pred             CCcCccccCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHh
Q 005991           53 TGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF  132 (666)
Q Consensus        53 ~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~  132 (666)
                      +.++++||++.....+..   +.+...|+.++|+++++++||++|++++...++..++++++||+||+++++++|++|++
T Consensus        22 ~~~~~~~~~~~~~~~~~~---~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~   98 (666)
T PLN02614         22 PSVGPVYRSIFAKDGFPN---PIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRS   98 (666)
T ss_pred             CCCCCcccCcccccccCC---CCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHH
Confidence            556788998865544432   24567899999999999999999998652112222456789999999999999999999


Q ss_pred             CCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhc-CCCceE
Q 005991          133 HGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISE-IPSVHL  211 (666)
Q Consensus       133 ~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~l~~  211 (666)
                      +|+++||+|+|+++|++||++++|||+++|+++||+++.++++++.+++++++++++|++.+....+...... .+.++.
T Consensus        99 ~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~  178 (666)
T PLN02614         99 VGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKT  178 (666)
T ss_pred             cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceE
Confidence            9999999999999999999999999999999999999999999999999999999999987765544333222 233677


Q ss_pred             EEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc
Q 005991          212 IVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM  291 (666)
Q Consensus       212 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~  291 (666)
                      ++.++.............+..+.+|+++...+.....+.....++|+++|+|||||||.||||++||+|+++.+.+....
T Consensus       179 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~  258 (666)
T PLN02614        179 VVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRL  258 (666)
T ss_pred             EEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhh
Confidence            77775421110000111234567888877654322222233568999999999999999999999999999877654433


Q ss_pred             c-----ccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHh
Q 005991          292 V-----QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK  366 (666)
Q Consensus       292 ~-----~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  366 (666)
                      +     ++.++|++++++|++|++++...+.+++.|+++++.++++..++++|++++||+++++|++|+.++..+...+.
T Consensus       259 ~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~  338 (666)
T PLN02614        259 LKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLS  338 (666)
T ss_pred             ccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHh
Confidence            2     56789999999999999998776677889999999888999999999999999999999999999998888888


Q ss_pred             hcchHHHHHHHHHHHHHHHHHHcCCC---CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCc
Q 005991          367 ASGTLREKLFTAAYNSKKQAIVSGQT---PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGY  443 (666)
Q Consensus       367 ~~~~~~~~l~~~~~~~k~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~Y  443 (666)
                      ..+.+++.++..++..+......+..   ...+++.++++++++.+++++|.+++||+++++++.++++...+++++++|
T Consensus       339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~Y  418 (666)
T PLN02614        339 DGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGY  418 (666)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEeeC
Confidence            88888899999888877666554432   236778889999999999999999999999999875555443358999999


Q ss_pred             ccchhhhhhhccCCCC-CCCCCccCCccCcEEEEEecCCC--CCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCC
Q 005991          444 GMTETSCIISAIDKGD-NLSGHVGSPNPACEIKLVDVPEM--NYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG  520 (666)
Q Consensus       444 G~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~ivd~~~~--~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~  520 (666)
                      |+||+++.++...+.+ ...+++|+|+||++++|+|++++  ..++.   ++.|||||+||++|.|||++|+.|+++| .
T Consensus       419 G~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~---g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~  494 (666)
T PLN02614        419 GLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALAS---TPRGEICIRGKTLFSGYYKREDLTKEVL-I  494 (666)
T ss_pred             chHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCC---CCCceEEEcCCcccccccCCHHHhhhhh-c
Confidence            9999986555444333 35689999999999999986554  33333   3589999999999999999999999999 6


Q ss_pred             CCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChhHHHHHH
Q 005991          521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWA  600 (666)
Q Consensus       521 ~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~  600 (666)
                      ||||||||+|++|+||+|+|+||+||+||+++|+||+|.|||++|.+||+|.+|+|+|++.+.+++|+|+|+.+.+.+|+
T Consensus       495 dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alvv~~~~~~~~~~  574 (666)
T PLN02614        495 DGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWA  574 (666)
T ss_pred             cCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEEeCCHHHHHHHH
Confidence            99999999999999999999999999999878999999999999999999999999999878899999999998888887


Q ss_pred             HHcCCCc-------------------------ccccccccCcchhHHHHH-------HHHhhhhhhhhhccc
Q 005991          601 ASQGIKV-------------------------IYCFSFRANSHVIFIALI-------HNLCQLYSSKELFRS  640 (666)
Q Consensus       601 ~~~~l~~-------------------------~~~~~~~~p~~i~~v~~~-------~~~~gK~~r~~l~~~  640 (666)
                      +++++..                         .-+..|..++.|.++..+       .|.++|+.|+.+.+.
T Consensus       575 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~  646 (666)
T PLN02614        575 AENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKY  646 (666)
T ss_pred             HhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHH
Confidence            7665430                         113466677777766533       566689999888777

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=2e-86  Score=712.42  Aligned_cols=505  Identities=39%  Similarity=0.651  Sum_probs=431.1

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ....++..++.+.++.+|+.+++.+.     ..+.++.+||+|+.+++.++|++|++.|+.+||+|+|++.|+++|+++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d   87 (613)
T COG1022          13 AEIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIAD   87 (613)
T ss_pred             hhcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence            35578899999999999998888765     2466889999999999999999999999977999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH-HHHHHhhhcCCCceEEEEeCCCCCC-----CCCCCCCC
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-NTLLSFISEIPSVHLIVVVGGKDEH-----LPSLPSTS  229 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~~l~~ii~~~~~~~~-----~~~~~~~~  229 (666)
                      +||+.+|++.||++++++++++.|+|++++++++|++.... +.+......++.+..++...+....     ........
T Consensus        88 ~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (613)
T COG1022          88 LAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFP  167 (613)
T ss_pred             HHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccc
Confidence            99999999999999999999999999999999999998544 4444444443332222211110000     00000001


Q ss_pred             CcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccc-cCCCcEEEEcCChHH
Q 005991          230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ-FYPSDIYMSYLPLAH  308 (666)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~h  308 (666)
                      ......+ .+...+  ......+..+||+|+|+|||||||.|||||+||+|+++++........ ++++|+++++||++|
T Consensus       168 ~~~~~~~-~~~~~~--~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaH  244 (613)
T COG1022         168 DEGISLF-LIDSAG--LEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAH  244 (613)
T ss_pred             cccchhh-hhcccc--cccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHH
Confidence            1111111 111111  111224678999999999999999999999999999999999998886 999999999999999


Q ss_pred             HHHHHHHHHHHHhCcEEEEecCCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005991          309 IYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV  388 (666)
Q Consensus       309 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~  388 (666)
                      ++++.+.......|+...++..++..+++++++++||++++||++|+.+.+.+.+.+.+.+..++.+|..++..+.....
T Consensus       245 i~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~  324 (613)
T COG1022         245 IFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKIS  324 (613)
T ss_pred             HHHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence            99999855545555555566789999999999999999999999999999999999999999999999999987754432


Q ss_pred             c----CCCC--ChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCC
Q 005991          389 S----GQTP--SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS  462 (666)
Q Consensus       389 ~----~~~~--~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~  462 (666)
                      .    +...  ....|+++|+|+++.+|+++|++++||+++++++..+++. .|+++.++||+|||++.++++++.....
T Consensus       325 ~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~-lGi~i~eGYGlTEts~~~~v~~~~~~~~  403 (613)
T COG1022         325 RALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRS-LGIPILEGYGLTETSAVVSVNPPDRFVL  403 (613)
T ss_pred             hhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHH-cCCCeEEEecccccccceEEccccCccc
Confidence            2    2222  2457999999999999999999999999999999999998 5899999999999999999999999999


Q ss_pred             CCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 005991          463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID  542 (666)
Q Consensus       463 ~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G  542 (666)
                      +++|.|+|++|++|+|              .|||+||||+||+|||++|++|+++|++||||+|||+|.+|++|+|+|+|
T Consensus       404 gtvG~p~p~~evKI~d--------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~g  469 (613)
T COG1022         404 GTVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITG  469 (613)
T ss_pred             CCcCCcCCCceEEEcc--------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEee
Confidence            9999999999999998              69999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChhHHHHHHHHcC
Q 005991          543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQG  604 (666)
Q Consensus       543 R~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~~  604 (666)
                      |+||+||+++|+||+|+.||+.+.++|.|.+++|+| +++.+++|+|+|+.+.+.+|...++
T Consensus       470 RkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~~~l~~~a~~~~  530 (613)
T COG1022         470 RKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDFDALEKWAESLN  530 (613)
T ss_pred             cccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999 6689999999999999999998875

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=4.2e-85  Score=741.04  Aligned_cols=582  Identities=40%  Similarity=0.673  Sum_probs=478.7

Q ss_pred             CCCcCccccCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHH
Q 005991           52 QTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL  131 (666)
Q Consensus        52 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~  131 (666)
                      .+.++++||++...+.+.+.   .++..|++++|.+.++++|+++|++.+...++..++++++||+||.++++++|++|.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~---~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~   95 (660)
T PLN02861         19 KPSAGPVYRSIYAKDGLLDL---PADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIR   95 (660)
T ss_pred             CCCCCCcccccccccccccC---CCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHH
Confidence            35568899998877666542   357789999999999999999999875322333456788999999999999999999


Q ss_pred             hCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCC-Cce
Q 005991          132 FHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIP-SVH  210 (666)
Q Consensus       132 ~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~l~  210 (666)
                      ++|+++||+|+|+++|++||+++++||+++|+++|||+++++.+++.++|++++++++|++......+.......+ .++
T Consensus        96 ~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~  175 (660)
T PLN02861         96 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLK  175 (660)
T ss_pred             HcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999998877666655555443 577


Q ss_pred             EEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc
Q 005991          211 LIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL  290 (666)
Q Consensus       211 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~  290 (666)
                      .++.+++............+....+|+++...+... ....+..++|+++|+|||||||.||||++||+++++.+.....
T Consensus       176 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~  254 (660)
T PLN02861        176 TIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDH  254 (660)
T ss_pred             EEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHh
Confidence            888776432111101111234557788877654321 1223456899999999999999999999999999988766544


Q ss_pred             ccc-----cCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHH
Q 005991          291 MVQ-----FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV  365 (666)
Q Consensus       291 ~~~-----~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  365 (666)
                      .++     +.++|++++++|++|++++...+.+++.|++++++++++..++++|++++||+++++|++|+.|++.+...+
T Consensus       255 ~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~  334 (660)
T PLN02861        255 LLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKI  334 (660)
T ss_pred             ccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHH
Confidence            333     467899999999999999887777899999999988899999999999999999999999999999999999


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHcCCCC---ChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC-Ccccc
Q 005991          366 KASGTLREKLFTAAYNSKKQAIVSGQTP---SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG-CQVME  441 (666)
Q Consensus       366 ~~~~~~~~~l~~~~~~~k~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~  441 (666)
                      ...+.+++.+|+.++..+......+...   .+.+++++++++++.+|+++|.+++||+++++++.++++ .++ ..+++
T Consensus       335 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~-~~~~~~l~~  413 (660)
T PLN02861        335 SSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLR-VTSCSVLSQ  413 (660)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHH-HHcCCCeeE
Confidence            9999999999999999888777654322   356788899999999999999999999999999866554 455 47999


Q ss_pred             CcccchhhhhhhccCCCC-CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCC
Q 005991          442 GYGMTETSCIISAIDKGD-NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG  520 (666)
Q Consensus       442 ~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~  520 (666)
                      +||+||+++.++.....+ ...+++|+|+|+++++|+|.++.++.. ..+++.|||+|+||++|.|||++|+.|+++| .
T Consensus       414 ~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~-~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~  491 (660)
T PLN02861        414 GYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDA-LSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-I  491 (660)
T ss_pred             ecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCccc-CCCCCceeEEEcCCcccccccCCHHHHHhhh-h
Confidence            999999987655443332 356899999999999999855443221 1233589999999999999999999999999 6


Q ss_pred             CCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChhHHHHHH
Q 005991          521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWA  600 (666)
Q Consensus       521 ~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~  600 (666)
                      ||||||||+|++|+||+|+|+||+||+||+++|++|+|++||++|.+||.|.+|+|+|.+.++.++|+|+++.+++.+|+
T Consensus       492 dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~  571 (660)
T PLN02861        492 DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWA  571 (660)
T ss_pred             ccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCHHHHHHHH
Confidence            89999999999999999999999999999878999999999999999999999999999877899999999999999998


Q ss_pred             HHcCCCcc-------------------------cccccccCcchhHHH--H-----HHHHhhhhhhhhhccc
Q 005991          601 ASQGIKVI-------------------------YCFSFRANSHVIFIA--L-----IHNLCQLYSSKELFRS  640 (666)
Q Consensus       601 ~~~~l~~~-------------------------~~~~~~~p~~i~~v~--~-----~~~~~gK~~r~~l~~~  640 (666)
                      +++++...                         -...+..++.+.+.+  +     ..|.++|+.|+.+.+.
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~  643 (660)
T PLN02861        572 ANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKY  643 (660)
T ss_pred             HHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHH
Confidence            88765200                         123455566655543  2     4677789999888777

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.3e-84  Score=735.71  Aligned_cols=593  Identities=41%  Similarity=0.649  Sum_probs=488.7

Q ss_pred             ceEEcCCCCC-----CCcCccccCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHH
Q 005991           43 YSVRLPEKLQ-----TGKWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYG  117 (666)
Q Consensus        43 ~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~  117 (666)
                      |++++.+..+     +.++++||+....+.+..   ..++..|++++|.+.++++|+++|++++...++..++++++||+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~   80 (660)
T PLN02430          4 FAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPP---IDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYK   80 (660)
T ss_pred             eeeeecccCCCCCCCCCCCCccccccccccccC---CCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHH
Confidence            5555543332     337899999875554432   34678999999999999999999998763223334567889999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHH
Q 005991          118 EVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN  197 (666)
Q Consensus       118 el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~  197 (666)
                      |+.++++++|++|.+.|+++||+|+|+++|++||+++++||+++|+++||++++++++++.+++++++++++|++.....
T Consensus        81 el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~  160 (660)
T PLN02430         81 EVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK  160 (660)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999875432


Q ss_pred             -HHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEe
Q 005991          198 -TLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVL  276 (666)
Q Consensus       198 -~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~  276 (666)
                       .+.......+.++.+|.++.............++..++|+++...+........+..|+|+++|+|||||||.||||++
T Consensus       161 ~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~l  240 (660)
T PLN02430        161 ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL  240 (660)
T ss_pred             HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEe
Confidence             2322233456678888876532211111112245567899988766543333334578999999999999999999999


Q ss_pred             cHHHHHHHHhhcccc-----cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCCHHHHHHHHHhhcCeEEeech
Q 005991          277 THGNLISNVAGFSLM-----VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVP  351 (666)
Q Consensus       277 th~~l~~~~~~~~~~-----~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P  351 (666)
                      ||+|+.+.+......     .+++++|++++++|++|.+++...+.++..|++++++..++..+++++++++||++.++|
T Consensus       241 th~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP  320 (660)
T PLN02430        241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (660)
T ss_pred             ecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecH
Confidence            999998877654321     246789999999999999999887778899999999888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC---CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHH
Q 005991          352 RLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT---PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVM  428 (666)
Q Consensus       352 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~  428 (666)
                      ++|+++++.+...+...+.+++.+|..++..|...+..+..   ++.++|.++|+++++.+|+++|.+++||+++++++.
T Consensus       321 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~  400 (660)
T PLN02430        321 RVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIE  400 (660)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHH
Confidence            99999999999888888899999999999999888765532   346789999999999999999999999999999998


Q ss_pred             HHHHHHhCCccccCcccchhhhhhhccCCCC-CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccc
Q 005991          429 DFLKVCFGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGY  507 (666)
Q Consensus       429 ~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY  507 (666)
                      ++++...++.++++||+||+++.++...+.+ ...+++|+|.++++++++|.+++++.+.+. ++.|||+|+|++++.||
T Consensus       401 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~-~~~GEi~vrg~~v~~GY  479 (660)
T PLN02430        401 EFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGE-PPRGEICVRGKCLFSGY  479 (660)
T ss_pred             HHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCC-CCcceEEecCCCccccc
Confidence            8777654578999999999987766654443 356899999999999999876665544332 24799999999999999


Q ss_pred             cCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCCCeEEE
Q 005991          508 YKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVA  587 (666)
Q Consensus       508 ~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va  587 (666)
                      |++|+.|+++| .||||||||+|++|+||+|+|+||+||+||+++|++|+|++||++|.+||.|.+|+|+|++.+++++|
T Consensus       480 ~~~~e~t~~~~-~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A  558 (660)
T PLN02430        480 YKNPELTEEVM-KDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVA  558 (660)
T ss_pred             cCChHHhhhhh-hccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEE
Confidence            99999999999 69999999999999999999999999999987899999999999999999999999999876789999


Q ss_pred             EEEcChhHHHHHHHHcCCCc-------------------------ccccccccCcchhHHHHH-------HHHhhhhhhh
Q 005991          588 IVAVDPDVLKDWAASQGIKV-------------------------IYCFSFRANSHVIFIALI-------HNLCQLYSSK  635 (666)
Q Consensus       588 ~vv~~~~~l~~~~~~~~l~~-------------------------~~~~~~~~p~~i~~v~~~-------~~~~gK~~r~  635 (666)
                      +|+++++.+.+|++++++..                         ..+..|+.+++|.+.+.+       .|.++|+.|+
T Consensus       559 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~  638 (660)
T PLN02430        559 VVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRN  638 (660)
T ss_pred             EEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhH
Confidence            99999988888777654420                         113467777777766533       5667899999


Q ss_pred             hhccc
Q 005991          636 ELFRS  640 (666)
Q Consensus       636 ~l~~~  640 (666)
                      .+.+.
T Consensus       639 ~i~~~  643 (660)
T PLN02430        639 NLLKY  643 (660)
T ss_pred             HHHHH
Confidence            88777

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.9e-82  Score=718.15  Aligned_cols=586  Identities=32%  Similarity=0.520  Sum_probs=479.2

Q ss_pred             CCceEEcCCCCCCCcCccccCCCCCC----cccccCCCCCCCCCHHHHHHHHHHhCCCCceEEEEEec----------cC
Q 005991           41 QGYSVRLPEKLQTGKWNVYRSARSPL----TLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRV----------DG  106 (666)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~----------~~  106 (666)
                      ..+++++++...+..+++||++....    .+...   .++..|++++|.++++++||++|++++...          ++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~  106 (700)
T PTZ00216         30 GPQNVPVPGTETENASAIYRIAGVTDEEHERLRNE---WYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADG  106 (700)
T ss_pred             CCcceecCCCCCCCCCCcccCcccccchhcccccc---cCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCC
Confidence            35788898888888899999876443    22222   245679999999999999999999986210          11


Q ss_pred             c--------cCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHH
Q 005991          107 T--------VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVK  178 (666)
Q Consensus       107 ~--------~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~  178 (666)
                      .        .++++++||+||.++++++|++|.++|+++||+|+|+++|++||+++++||+++|++++|+++.++++++.
T Consensus       107 ~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~  186 (700)
T PTZ00216        107 KERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALA  186 (700)
T ss_pred             ccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHH
Confidence            1        13578999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCceEEEEccccHHHHHHhhhc--CCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCC--CCCC-CCCCC
Q 005991          179 YVVNHAEIEAIFCIPQTLNTLLSFISE--IPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGC--SSPQ-PFCPP  253 (666)
Q Consensus       179 ~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~  253 (666)
                      +++++++++++|++......+.+....  .+.. .+++++.....    ....+....+|+++...+.  .... ...+.
T Consensus       187 ~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~-~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (700)
T PTZ00216        187 YALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-TIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPE  261 (700)
T ss_pred             hhhhccCccEEEECHHHHHHHHHhhhhccCCce-EEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCC
Confidence            999999999999997766555444332  2333 45555542211    1223556789999887652  1111 12345


Q ss_pred             CCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccccc-----ccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEe
Q 005991          254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV-----QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFY  328 (666)
Q Consensus       254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~  328 (666)
                      .++|+++|+|||||||.||||++||+|+++.+.+....+     .+.++|++++++|++|++++......+..|+++++ 
T Consensus       262 ~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~-  340 (700)
T PTZ00216        262 NNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF-  340 (700)
T ss_pred             CcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEE-
Confidence            789999999999999999999999999998877654432     24678999999999999998776667888888776 


Q ss_pred             cCCHHHHHH-------HHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHh
Q 005991          329 QGDNLKLMD-------DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLV  401 (666)
Q Consensus       329 ~~~~~~~~~-------~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~  401 (666)
                       .++..+.+       ++++++||++.++|++|+.+++.+...+...+.+++.+|..++..+...+..+. ..++++.++
T Consensus       341 -~~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~v  418 (700)
T PTZ00216        341 -GSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK-DTPYWNEKV  418 (700)
T ss_pred             -CCHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC-CCchHHHHH
Confidence             45666665       789999999999999999999999888888889999999999998887766543 346789999


Q ss_pred             hHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCC
Q 005991          402 FNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPE  481 (666)
Q Consensus       402 ~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~  481 (666)
                      |++++..+|+++|.+++||+++++++.++++..++ +++++||+||+++.++.....+...+++|+|++|++++|+|.++
T Consensus       419 ~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~  497 (700)
T PTZ00216        419 FSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEE  497 (700)
T ss_pred             HHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechh
Confidence            99999999999999999999999999999988778 99999999999877666665566778999999999999999654


Q ss_pred             CCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHH
Q 005991          482 MNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKI  561 (666)
Q Consensus       482 ~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eI  561 (666)
                      ..  ..+.+++.|||||+|++++.|||++|+.|+++|+.||||||||+|++|+||+|+|+||+||+||+++|++|+|++|
T Consensus       498 ~~--~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eI  575 (700)
T PTZ00216        498 YK--HTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEAL  575 (700)
T ss_pred             hc--cCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHH
Confidence            22  2233445899999999999999999999999998899999999999999999999999999999669999999999


Q ss_pred             HHHHhcCcCcce--EEEEEeCCCCeEEEEEEcChhHHHHHHHHcCCCc-------------------------ccccccc
Q 005991          562 ENVYAKCKFVLQ--CFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIKV-------------------------IYCFSFR  614 (666)
Q Consensus       562 E~~l~~~p~V~~--~~V~g~~~~~~~va~vv~~~~~l~~~~~~~~l~~-------------------------~~~~~~~  614 (666)
                      |++|.+||.|.+  ++|++.+++++++|+|+++++.+.+|++++++..                         .-...|.
T Consensus       576 E~~l~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e  655 (700)
T PTZ00216        576 EALYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFE  655 (700)
T ss_pred             HHHHhcCcCcccceEEEEEecCCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCce
Confidence            999999999997  5677777789999999999988888887765431                         0122455


Q ss_pred             cCcchhHHHH-------HHHHhhhhhhhhhccc
Q 005991          615 ANSHVIFIAL-------IHNLCQLYSSKELFRS  640 (666)
Q Consensus       615 ~p~~i~~v~~-------~~~~~gK~~r~~l~~~  640 (666)
                      .+++|.++..       ..|.++|+.|+++.+.
T Consensus       656 ~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~  688 (700)
T PTZ00216        656 IVRHVRVLSDEWTPENGVLTAAMKLKRRVIDER  688 (700)
T ss_pred             eEeEEEEECCCCCCCCCCCChhhccchHHHHHH
Confidence            6666666532       2366688888888765

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-79  Score=608.52  Aligned_cols=495  Identities=22%  Similarity=0.333  Sum_probs=428.2

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...|+.++++..+++.||+.|+++..       +..++||+|+.+.++++|++|..+|+++||+|+++.||+.+|+...|
T Consensus        48 ~~~Tigq~l~~~t~~v~dkea~Vf~~-------eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~l  120 (596)
T KOG1177|consen   48 DSETIGQLLETTTERVPDKEAAVFDH-------EGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQL  120 (596)
T ss_pred             ccccHHHHHHHHhhccCcceEEEEee-------ccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHH
Confidence            45799999999999999999998861       12359999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEcccc-----HHHHHHhhh-------------cCCCceEEEEeCCC
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT-----LNTLLSFIS-------------EIPSVHLIVVVGGK  218 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~-------------~~~~l~~ii~~~~~  218 (666)
                      ||.++|.+.|++||.+..+++++.|+..+++++|+...+     .+.+.++.+             .+|.+.++|..+++
T Consensus       121 A~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed  200 (596)
T KOG1177|consen  121 ACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED  200 (596)
T ss_pred             HHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC
Confidence            999999999999999999999999999999999998643     334444443             25678888887743


Q ss_pred             CCCCCCCCCCCCcEEEehHHHHhcCCCCCCC-----CCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccc
Q 005991          219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQP-----FCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ  293 (666)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~  293 (666)
                      .+.         .....+++++..+......     .....|||++.|.|||||||.|||+.+||.|++++.......++
T Consensus       201 ~~~---------~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g  271 (596)
T KOG1177|consen  201 HPL---------PGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAG  271 (596)
T ss_pred             CcC---------CCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhC
Confidence            321         1235678887766542211     12357899999999999999999999999999999998888899


Q ss_pred             cCCCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcch
Q 005991          294 FYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGT  370 (666)
Q Consensus       294 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  370 (666)
                      ++..+++++..|++|.+|... ++.+|..|++++|+.  +++...++.|.++|+|.++++|++|..|++.....-     
T Consensus       272 ~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~-----  346 (596)
T KOG1177|consen  272 YNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQ-----  346 (596)
T ss_pred             cCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhcc-----
Confidence            999999999999999999665 889999999999976  899999999999999999999999998875311110     


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCC-ccccCcccchhh
Q 005991          371 LREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETS  449 (666)
Q Consensus       371 ~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TE~~  449 (666)
                                                +           -.+++|.++.||+++|+++++.+....+. .+...||+||++
T Consensus       347 --------------------------~-----------~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts  389 (596)
T KOG1177|consen  347 --------------------------V-----------DLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETS  389 (596)
T ss_pred             --------------------------C-----------chhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccC
Confidence                                      0           01489999999999999999999886654 377899999999


Q ss_pred             hhhhccCCCC---CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeec
Q 005991          450 CIISAIDKGD---NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHT  526 (666)
Q Consensus       450 ~~~~~~~~~~---~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~T  526 (666)
                      ...+...+.+   ....++|..+++.|.+|+| .++...+.+.   .||||+||+++|.|||++++.|++..+.|.||+|
T Consensus       390 ~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~---~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~T  465 (596)
T KOG1177|consen  390 PVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGT---KGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDT  465 (596)
T ss_pred             cceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccCC---CceEEEEechhheeecCCcccchhhcccccceec
Confidence            8777665555   4567899999999999999 5556566665   6999999999999999999999999999999999


Q ss_pred             ccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC--------hhH
Q 005991          527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD--------PDV  595 (666)
Q Consensus       527 GDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~--------~~~  595 (666)
                      ||+|.+|++|+++|+||.+|+|+ ++|++|+|.|||+.|.+||.|.++.|+|.+++   +.++|.|.+.        .|+
T Consensus       466 GDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~  544 (596)
T KOG1177|consen  466 GDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAET  544 (596)
T ss_pred             CceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHH
Confidence            99999999999999999999999 59999999999999999999999999999876   5788888763        478


Q ss_pred             HHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          596 LKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       596 l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      |++||+.+ +.     +|++|++|++++ +|.+.+|||.|-++++.
T Consensus       545 lKa~Ck~k-la-----HFKiPky~vf~~~FPlT~tGKIqKFeir~~  584 (596)
T KOG1177|consen  545 LKAMCKGK-LA-----HFKIPKYFVFVDEFPLTTTGKIQKFEIREM  584 (596)
T ss_pred             HHHHHhcc-cc-----cccCCcEEEEeccCcccccccchhHHHHHH
Confidence            99999999 88     999999999995 88999999999999876

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-79  Score=655.15  Aligned_cols=489  Identities=28%  Similarity=0.418  Sum_probs=410.8

Q ss_pred             HHHHhCCCC-ceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005991           87 YAVENYPDY-KYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHG--LQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (666)
Q Consensus        87 ~~a~~~pd~-~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~g--v~~gd~V~i~~~n~~e~~~~~lA~~~~G~  163 (666)
                      +.+..++++ +++++.   +.   ..+.+||+|+.+++.++|.+|.++|  +++||+|++++||+++++++++||+.+|+
T Consensus        24 ~~~~~~~~~~~~~i~~---~~---~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga   97 (537)
T KOG1176|consen   24 RPAFVYLDRNTSLVYQ---DS---DGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGA   97 (537)
T ss_pred             ccccccccCcceEEEe---cC---CCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Confidence            334444444 777765   21   1356999999999999999999876  88999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe-hHHHHhc
Q 005991          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS-YLQLQSQ  242 (666)
Q Consensus       164 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  242 (666)
                      +..|+||.+.+.++.+.+++++++++|++....+.+.+....+.  ..++++.........   .......+ +..+...
T Consensus        98 ~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~~~---~~~~~~~~~~~~~~~~  172 (537)
T KOG1176|consen   98 VLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA--LKIIVLTGDEGVISI---SDLVEDLDAFEDLMPE  172 (537)
T ss_pred             cccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC--CceEEEecccCcccc---ccccccccchhhcccc
Confidence            99999999999999999999999999999999988877776655  344444432111000   00011112 4444443


Q ss_pred             CCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHH-HHHh
Q 005991          243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIV-SVYY  321 (666)
Q Consensus       243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~-~l~~  321 (666)
                      +....  ..+.+.+|++.|+|||||||.||||++||++++...........+...|+.++.+|++|.+|+...+. .+..
T Consensus       173 ~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~  250 (537)
T KOG1176|consen  173 GLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAG  250 (537)
T ss_pred             CCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhC
Confidence            33222  44567799999999999999999999999999998877666677778999999999999999999776 5566


Q ss_pred             CcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHH
Q 005991          322 GVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL  400 (666)
Q Consensus       322 G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~  400 (666)
                      |+++++.+ +++..+++.|++|++|+++++|.++..|.+....                                  .  
T Consensus       251 ~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~----------------------------------~--  294 (537)
T KOG1176|consen  251 GTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIV----------------------------------K--  294 (537)
T ss_pred             CceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCcc----------------------------------C--
Confidence            66666666 6999999999999999999999999998763100                                  0  


Q ss_pred             hhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC-CccccCcccchhhhhhhccCCCC-CCCCCccCCccCcEEEEEe
Q 005991          401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG-CQVMEGYGMTETSCIISAIDKGD-NLSGHVGSPNPACEIKLVD  478 (666)
Q Consensus       401 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~ivd  478 (666)
                            ..-.+++|.+.+||+++++++.+.+++.++ ..+.++||+||+++.++.+...+ ..++++|++++++++++.+
T Consensus       295 ------~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~  368 (537)
T KOG1176|consen  295 ------KYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLD  368 (537)
T ss_pred             ------cccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeC
Confidence                  001159999999999999999999999998 88999999999998777776655 4899999999988888887


Q ss_pred             cCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeecc
Q 005991          479 VPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAP  558 (666)
Q Consensus       479 ~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p  558 (666)
                       +.+..+++++   .||||++|+++|+|||+||++|++.|+++|||||||+|++|+||+|+|+||+||+||. +|++|+|
T Consensus       369 -e~g~~l~~~~---~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~-~G~qv~P  443 (537)
T KOG1176|consen  369 -ETGVSLGPNQ---TGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKY-GGEQVSP  443 (537)
T ss_pred             -CCCCCCCCCC---ceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheee-CCEEeCH
Confidence             6777777776   8999999999999999999999999988899999999999999999999999999996 9999999


Q ss_pred             HHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHH
Q 005991          559 EKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNL  628 (666)
Q Consensus       559 ~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~  628 (666)
                      .|||++|..||.|.||+|+|.+|+   +.++|+||+.      ++++.+|++++ ++     +|++|+.+.|++ +|++.
T Consensus       444 ~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~-l~-----~y~~~~~V~Fvd~lPKs~  517 (537)
T KOG1176|consen  444 AEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKK-LP-----AYKLPGGVVFVDELPKTP  517 (537)
T ss_pred             HHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHhh-CC-----hhhccCeEEEeccCCCCC
Confidence            999999999999999999999876   7899999985      48999999999 98     799999999995 88888


Q ss_pred             hhhhhhhhhccch
Q 005991          629 CQLYSSKELFRSR  641 (666)
Q Consensus       629 ~gK~~r~~l~~~~  641 (666)
                      +||+.|+.|++..
T Consensus       518 ~GKi~R~~lr~~~  530 (537)
T KOG1176|consen  518 NGKILRRKLRDIA  530 (537)
T ss_pred             cchHHHHHHHHHH
Confidence            8999999998763

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2e-76  Score=653.70  Aligned_cols=497  Identities=29%  Similarity=0.460  Sum_probs=419.3

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ....++.+++.+.++++|+++|+.+.   +..    ..+||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus         8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~   80 (534)
T COG0318           8 TAELTLASLLERAARRNPDRPALIFL---GRG----GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF   80 (534)
T ss_pred             cccccHHHHHHHHHHhCCCceEEEEc---CCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            34578999999999999999999875   222    15999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (666)
                      |||+++|++++|||+.+..+++.++++++++++++++....+.+.......+....+...........          .+
T Consensus        81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~  150 (534)
T COG0318          81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLP----------IT  150 (534)
T ss_pred             HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEeccccccccc----------cc
Confidence            99999999999999999999999999999999999998855555554444333333332222110000          24


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccc--cCCCcEEEEcCChHHHHHHH
Q 005991          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ--FYPSDIYMSYLPLAHIYERA  313 (666)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~h~~~~~  313 (666)
                      +++...............+++|+++|+|||||||.||||++||+|+..+.......+.  +.+.|++++++|++|.+|+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~  230 (534)
T COG0318         151 LEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLI  230 (534)
T ss_pred             HHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHH
Confidence            5555333222222222367999999999999999999999999999999888888777  89999999999999999999


Q ss_pred             HHHH-HHHhCcEEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005991          314 NQIV-SVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (666)
Q Consensus       314 ~~~~-~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (666)
                      ..+. +++.|+++++.+   +++..++..+.++++|++.++|+++..++......-                        
T Consensus       231 ~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~------------------------  286 (534)
T COG0318         231 VGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD------------------------  286 (534)
T ss_pred             HHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc------------------------
Confidence            8655 599999999987   799999999999999999999999999876311100                        


Q ss_pred             CCCCChhhhHHhhHHHHHHhCC-ceEEEEecCCCCcHHHHHHHHHHhC-CccccCcccchhhhhhhccCCCC--CCCCCc
Q 005991          390 GQTPSKMWDRLVFNKIRERLGG-RVRFMGSGASPLSPDVMDFLKVCFG-CQVMEGYGMTETSCIISAIDKGD--NLSGHV  465 (666)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~~~-~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~--~~~~~v  465 (666)
                                        .... ++|.+++||+++++++.+++++.++ ..++++||+||++..++.....+  ...+++
T Consensus       287 ------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~  348 (534)
T COG0318         287 ------------------DDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSV  348 (534)
T ss_pred             ------------------cccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcc
Confidence                              0001 4999999999999999999999897 47999999999998777766655  467888


Q ss_pred             cCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCC
Q 005991          466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK  545 (666)
Q Consensus       466 G~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~  545 (666)
                      |+|+|+++++|+|.++....+    +++|||||+||+++.|||++|+.|++.|+.+|||+|||+|++|+||+++|+||.|
T Consensus       349 G~~~pg~~v~Ivd~~~~~~~p----g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~k  424 (534)
T COG0318         349 GRPLPGVEVRIVDPDGGEVLP----GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLK  424 (534)
T ss_pred             cccCCCcEEEEEeCCCCccCC----CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccc
Confidence            999999999999965543333    3489999999999999999999999999667999999999999999999999999


Q ss_pred             CeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC--------hhHHHHHHHHcCCCcccccccc
Q 005991          546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD--------PDVLKDWAASQGIKVIYCFSFR  614 (666)
Q Consensus       546 d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~--------~~~l~~~~~~~~l~~~~~~~~~  614 (666)
                      |+|+. +|++|+|.|||+++.+||.|.+|+|+|.+++   +.++|+|+++        ++++.++++.+ ++     .|+
T Consensus       425 d~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~~-l~-----~~~  497 (534)
T COG0318         425 DLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKR-LA-----LYK  497 (534)
T ss_pred             eEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHHHHHhh-hh-----ccc
Confidence            99995 9999999999999999999999999998865   7899999973        68999999997 88     999


Q ss_pred             cCcchhHHH-HHHHHhhhhhhhhhccchh
Q 005991          615 ANSHVIFIA-LIHNLCQLYSSKELFRSRC  642 (666)
Q Consensus       615 ~p~~i~~v~-~~~~~~gK~~r~~l~~~~~  642 (666)
                      +|+++.+++ +|++.+||++|+.|++...
T Consensus       498 ~P~~v~~v~~lP~t~sGKi~r~~lr~~~~  526 (534)
T COG0318         498 VPRIVVFVDELPRTASGKIDRRALREEYR  526 (534)
T ss_pred             CCeEEEEeCCCCCCCchhhhHHHHHHHHH
Confidence            999999995 8888889999999998744

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=5e-73  Score=601.23  Aligned_cols=485  Identities=22%  Similarity=0.304  Sum_probs=398.2

Q ss_pred             HHHHHHHHHh-CCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005991           82 HDNFIYAVEN-YPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDHACS  159 (666)
Q Consensus        82 ~~~~~~~a~~-~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA~~  159 (666)
                      +.+++++.+. .+|+.|+++.   +.. +..+.+||+||.++++++|+.|++ .|+ +||||+|++||.+|.++++|||+
T Consensus        12 ~n~~dr~~~~~~~~~~aii~~---~e~-~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~   86 (528)
T COG0365          12 LNALDRHLEADRPDDTAIIFD---GED-GLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATA   86 (528)
T ss_pred             hhhhhhhhhccCCCceEEEEE---cCC-CCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHH
Confidence            4456777664 4689999886   332 223889999999999999999987 578 99999999999999999999999


Q ss_pred             hcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHh--hhcCCC-ceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSF--ISEIPS-VHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       160 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--~~~~~~-l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ++|++.+|+.+.++++++++.+++++++++|+++.........  ...... +..+++....           +   +.|
T Consensus        87 riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~-----------~---~~~  152 (528)
T COG0365          87 RIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL-----------G---LWY  152 (528)
T ss_pred             HcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc-----------c---ccH
Confidence            9999999999999999999999999999999987654322111  000000 0013332221           1   567


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhc-ccccccCCCcEEEEcCChHHHHHHHH-
Q 005991          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF-SLMVQFYPSDIYMSYLPLAHIYERAN-  314 (666)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~~~~~~~d~~l~~~pl~h~~~~~~-  314 (666)
                      .++....... .+..+.+++|+++|+|||||||+||||+++|++++...... ...+.+.++|++++..++.|++|... 
T Consensus       153 ~~~~~~~~~~-~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~  231 (528)
T COG0365         153 DEAVEKASEK-FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYS  231 (528)
T ss_pred             HHHhhccCCC-CCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHH
Confidence            7776554332 23344789999999999999999999999999766655443 34577789999999999999999998 


Q ss_pred             HHHHHHhCcEEEEecC----CHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005991          315 QIVSVYYGVAVGFYQG----DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (666)
Q Consensus       315 ~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (666)
                      ++.+|..|++++++.+    ++..+++.|+++++|.+++.|+.++.|.+...                            
T Consensus       232 v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~----------------------------  283 (528)
T COG0365         232 VFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL----------------------------  283 (528)
T ss_pred             HHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC----------------------------
Confidence            7889999999999872    38899999999999999999999999876311                            


Q ss_pred             CCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCcc
Q 005991          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNP  470 (666)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~  470 (666)
                                    .++...++||.+.+.||||+++.++++.+.+|++|.+.||+||++.+.....+ +...++.|.|+|
T Consensus       284 --------------~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~~g~~g~p~p  348 (528)
T COG0365         284 --------------GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLP  348 (528)
T ss_pred             --------------cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcCCCCCCCCCC
Confidence                          01111258999999999999999999999999999999999999955554444 556666699999


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCccEEEEeCC--CcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeE
Q 005991          471 ACEIKLVDVPEMNYTSEDQPHPRGEICVRGP--IVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIF  548 (666)
Q Consensus       471 ~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~--~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~i  548 (666)
                      |+++.++|. +++.++.+   . |+|+++.+  ++++|||+||+.+.+++-+ +||+|||.+++|+||+++|+||.||+|
T Consensus       349 G~~~~vvdd-~g~~~~~~---~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~-~~y~tGD~~~~DedGy~~i~GR~DDvI  422 (528)
T COG0365         349 GYAVRRVDD-EGNPVPPG---V-GELVVRLPWPGMALTYWNDPERYKEAYFG-RWYRTGDWAERDEDGYFWLHGRSDDVI  422 (528)
T ss_pred             CceeEEECC-CCCcCCCC---c-eEEEEeCCCchhhhhhhCCHHHHHHHHhh-ceeecCceeEEccCCCEEEEeeccceE
Confidence            999999994 46655444   4 99999987  9999999999999999843 399999999999999999999999999


Q ss_pred             EcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC--------hhHHHHHHHHcCCCcccccccccCc
Q 005991          549 KLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD--------PDVLKDWAASQGIKVIYCFSFRANS  617 (666)
Q Consensus       549 kl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~--------~~~l~~~~~~~~l~~~~~~~~~~p~  617 (666)
                      |+ .|+||.|.|||++|.+||.|.||+|+|.++.   +.++|||++.        .++|++++++. +.     .+..|+
T Consensus       423 ~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~~L~~ei~~~vr~~-~~-----~~~~p~  495 (528)
T COG0365         423 KV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRHVARN-IG-----PHAIPR  495 (528)
T ss_pred             ec-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChHHHHHHHHHHHHhc-cC-----cccCCc
Confidence            97 6999999999999999999999999998765   5789999986        35677777776 66     799999


Q ss_pred             chhHH-HHHHHHhhhhhhhhhccchh
Q 005991          618 HVIFI-ALIHNLCQLYSSKELFRSRC  642 (666)
Q Consensus       618 ~i~~v-~~~~~~~gK~~r~~l~~~~~  642 (666)
                      +|.|| ++|+|.+|||.|+.||+...
T Consensus       496 ~i~fv~~LPkT~sGKI~R~~lr~~~~  521 (528)
T COG0365         496 KIRFVDELPKTASGKIQRRLLRKILH  521 (528)
T ss_pred             eEEEecCCCCCCcccHHHHHHHHHHh
Confidence            99999 59999999999999998744

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.4e-72  Score=631.89  Aligned_cols=516  Identities=16%  Similarity=0.175  Sum_probs=404.2

Q ss_pred             CCCCCCHHHHHHHHHHh--CCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHH
Q 005991           75 HPEIGTLHDNFIYAVEN--YPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWL  152 (666)
Q Consensus        75 ~~~~~tl~~~~~~~a~~--~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~  152 (666)
                      ....++..++++++++.  +||++|+++.   ....+..+.+||+||.++++++|++|+++|+++||+|+++++|++|++
T Consensus        55 ~~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~  131 (647)
T PTZ00237         55 GGELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPL  131 (647)
T ss_pred             CCeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Confidence            45667889999988765  7999999874   221123477999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccc---------cHHHHHHhhhcCC-CceEEEEeCCCC---
Q 005991          153 IVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ---------TLNTLLSFISEIP-SVHLIVVVGGKD---  219 (666)
Q Consensus       153 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~-~l~~ii~~~~~~---  219 (666)
                      +++|||+++|++++|+++.++++++.++|++++++++|+++.         ..+.+.+...... ....++.+....   
T Consensus       132 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~  211 (647)
T PTZ00237        132 IAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITS  211 (647)
T ss_pred             HHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccc
Confidence            999999999999999999999999999999999999999752         2233333332111 123444432111   


Q ss_pred             -CCCCCCCC-CCCcEEEehHHHHhcCC----CCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHH-HHHHHhhccccc
Q 005991          220 -EHLPSLPS-TSGVKLISYLQLQSQGC----SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGN-LISNVAGFSLMV  292 (666)
Q Consensus       220 -~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~-l~~~~~~~~~~~  292 (666)
                       ........ ........|++++....    .........+++|+++|+|||||||.||||+++|++ +.+....+....
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~  291 (647)
T PTZ00237        212 ESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII  291 (647)
T ss_pred             ccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc
Confidence             00000000 00001245666654321    111122345789999999999999999999999998 544333334445


Q ss_pred             ccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCC-------HHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHH
Q 005991          293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGD-------NLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV  365 (666)
Q Consensus       293 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  365 (666)
                      ....+|+++++.|+.|+.+...++.+++.|+++++++++       +..+++.++++++|++.++|+++..|.+......
T Consensus       292 ~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~  371 (647)
T PTZ00237        292 EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEAT  371 (647)
T ss_pred             CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccc
Confidence            677889999999999987766678899999999998743       6789999999999999999999998865210000


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCccc
Q 005991          366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGM  445 (666)
Q Consensus       366 ~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~  445 (666)
                                                   ...        .....++||.+++||+++++++.+++++.+|+++++.||+
T Consensus       372 -----------------------------~~~--------~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~  414 (647)
T PTZ00237        372 -----------------------------IIR--------SKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQ  414 (647)
T ss_pred             -----------------------------ccc--------cccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeech
Confidence                                         000        0000148999999999999999999999899999999999


Q ss_pred             chhhhhhhccCCCC-CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCC---CcCccccCChhhhhhccCC-
Q 005991          446 TETSCIISAIDKGD-NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGP---IVFQGYYKNEVQTREVIDG-  520 (666)
Q Consensus       446 TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~---~v~~GY~~~~~~t~~~~~~-  520 (666)
                      ||+++.++...... ...+++|+|+|+++++|+| ++++.++.++   .|||+++||   +++.|||++++.|++.|.. 
T Consensus       415 TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~ge---~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~  490 (647)
T PTZ00237        415 TEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKELNVNE---IGEVAFKLPMPPSFATTFYKNDEKFKQLFSKF  490 (647)
T ss_pred             HHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCCCCCC---ceEEEEeccCCchhhCceeCCHHHHHHHHhCC
Confidence            99986655433322 3348999999999999999 5666666554   899999986   7899999999999988854 


Q ss_pred             CCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh----
Q 005991          521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP----  593 (666)
Q Consensus       521 ~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----  593 (666)
                      +|||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+++   +.++|+|++++    
T Consensus       491 ~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~  569 (647)
T PTZ00237        491 PGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSN  569 (647)
T ss_pred             CCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccc
Confidence            799999999999999999999999999997 7999999999999999999999999998764   68999999752    


Q ss_pred             ---------hHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccch
Q 005991          594 ---------DVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSR  641 (666)
Q Consensus       594 ---------~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~  641 (666)
                               ++++++++++ ++     .+++|+.|++++ +|++.+||++|+.|++.-
T Consensus       570 ~~~~~~~l~~~i~~~~~~~-l~-----~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~  621 (647)
T PTZ00237        570 QSIDLNKLKNEINNIITQD-IE-----SLAVLRKIIIVNQLPKTKTGKIPRQIISKFL  621 (647)
T ss_pred             cCCCHHHHHHHHHHHHHhh-cC-----ccccCcEEEEcCCCCCCCCccEeHHHHHHHH
Confidence                     3456778877 87     999999999995 888889999999998763

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.4e-71  Score=622.44  Aligned_cols=497  Identities=21%  Similarity=0.270  Sum_probs=403.3

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ..-|+.++|++.++++|+++|+...   +      +.+||+||.++++++|++|.++|+++||+|+|+++|+++|+++++
T Consensus         5 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~l   75 (563)
T PLN02860          5 SQAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLL   75 (563)
T ss_pred             hhhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4468999999999999999999642   2      359999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhh-hcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI-SEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (666)
                      ||+++|++++||++.++.+++.++++++++++++++........... ..++.++.++..++......    .....+.+
T Consensus        76 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~  151 (563)
T PLN02860         76 AVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVF----IFLNSFLT  151 (563)
T ss_pred             HHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccc----cchhhccc
Confidence            99999999999999999999999999999999999876533332221 23455555555443210000    00001112


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHH
Q 005991          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ  315 (666)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~  315 (666)
                      ++++...+...........++++++|+|||||||.||||++||++++.........+++.++|++++.+|++|.+++...
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~  231 (563)
T PLN02860        152 TEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA  231 (563)
T ss_pred             cchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHH
Confidence            22222111111111123467899999999999999999999999998877666666788899999999999999999888


Q ss_pred             HHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCC
Q 005991          316 IVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS  394 (666)
Q Consensus       316 ~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~  394 (666)
                      +.++..|+++++.+ +++..+++.++++++|++.++|+++..|.+......                             
T Consensus       232 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-----------------------------  282 (563)
T PLN02860        232 LAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSM-----------------------------  282 (563)
T ss_pred             HHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh-----------------------------
Confidence            88999999998877 799999999999999999999999998876321000                             


Q ss_pred             hhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCC--------------
Q 005991          395 KMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD--------------  459 (666)
Q Consensus       395 ~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~--------------  459 (666)
                                 .....+++|.+++||+++++++.+.+++.+ ++++++.||+||+++.++.....+              
T Consensus       283 -----------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (563)
T PLN02860        283 -----------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVN  351 (563)
T ss_pred             -----------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhc
Confidence                       000114899999999999999999999888 789999999999976544322111              


Q ss_pred             ---------CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEE
Q 005991          460 ---------NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIG  530 (666)
Q Consensus       460 ---------~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg  530 (666)
                               ....++|+|+|+++++|++.+         +++.|||+++|++++.|||++|+.|++.|+.+|||+|||+|
T Consensus       352 ~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~---------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~  422 (563)
T PLN02860        352 QTKSSSVHQPQGVCVGKPAPHVELKIGLDE---------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIG  422 (563)
T ss_pred             ccccccccccCCcccCCccCCcEEEEecCC---------CCceeEEEEecCcccccccCCccccchhccCCCeEEccceE
Confidence                     112378999999999999832         23589999999999999999999999999889999999999


Q ss_pred             EEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh--------------
Q 005991          531 LWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP--------------  593 (666)
Q Consensus       531 ~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~--------------  593 (666)
                      ++|+||+++|+||+||+||+ +|++|+|.|||+++.+||+|.+|+|++.+++   +.++|+|++.+              
T Consensus       423 ~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~  501 (563)
T PLN02860        423 WIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKK  501 (563)
T ss_pred             EEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhcc
Confidence            99999999999999999997 8999999999999999999999999997654   68899998642              


Q ss_pred             ------hHHHHHHHHcCCCcccccccccCcchhHH-H-HHHHHhhhhhhhhhccch
Q 005991          594 ------DVLKDWAASQGIKVIYCFSFRANSHVIFI-A-LIHNLCQLYSSKELFRSR  641 (666)
Q Consensus       594 ------~~l~~~~~~~~l~~~~~~~~~~p~~i~~v-~-~~~~~~gK~~r~~l~~~~  641 (666)
                            +.+++++++++|+     .|++|+.++++ + +|++.+||++|++|++.-
T Consensus       502 ~~~~~~~~l~~~~~~~~L~-----~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~  552 (563)
T PLN02860        502 NLTLSSETLRHHCREKNLS-----RFKIPKLFVQWRKPFPLTTTGKIRRDEVRREV  552 (563)
T ss_pred             cccccHHHHHHHHhhCccc-----ccccceEEEEEecCCCCCcccchhHHHHHHHH
Confidence                  4678888875588     99999988764 5 899999999999998763

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=8.5e-71  Score=624.77  Aligned_cols=525  Identities=17%  Similarity=0.184  Sum_probs=408.5

Q ss_pred             CCCCHHHHHHHHHH-hCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           77 EIGTLHDNFIYAVE-NYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        77 ~~~tl~~~~~~~a~-~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ..+..+++|+++++ .+|+++|+++.   ....+..+.+||+||.++++++|++|+++|+++||+|+++++|++|+++++
T Consensus        86 ~~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~  162 (666)
T PLN02654         86 KTNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAM  162 (666)
T ss_pred             EeeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            45566888888876 48999999874   222234578999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHH---------HHHHhhhcC----CCceEEEEeCCCCCCC
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLN---------TLLSFISEI----PSVHLIVVVGGKDEHL  222 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~----~~l~~ii~~~~~~~~~  222 (666)
                      |||+++|++++|+++.++++++.+++++++++++|++.....         .+.......    .....++..+......
T Consensus       163 lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (666)
T PLN02654        163 LACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMK  242 (666)
T ss_pred             HHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccc
Confidence            999999999999999999999999999999999999865321         122211111    1112222222211000


Q ss_pred             CCCCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHH-HhhcccccccCCCcEEE
Q 005991          223 PSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISN-VAGFSLMVQFYPSDIYM  301 (666)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l  301 (666)
                      .............|+++..... ...+.....++|+++|+|||||||.||||+++|++++.. .......+++.++|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~  321 (666)
T PLN02654        243 REDTKWQEGRDVWWQDVVPNYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYW  321 (666)
T ss_pred             ccccccccCCcccHHHHhhcCC-CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEE
Confidence            0000000011234555543211 111223357899999999999999999999999997643 34455567889999999


Q ss_pred             EcCChHHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHH
Q 005991          302 SYLPLAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKL  375 (666)
Q Consensus       302 ~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l  375 (666)
                      +.+|+.|+++... ++.+|+.|+++++++     .++..+++.|+++++|++.++|+++..|.+.......         
T Consensus       322 ~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~---------  392 (666)
T PLN02654        322 CTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVT---------  392 (666)
T ss_pred             EcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccc---------
Confidence            9999999998766 668899999999986     3789999999999999999999999988753110000         


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC---CccccCcccchhhhhh
Q 005991          376 FTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCII  452 (666)
Q Consensus       376 ~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~  452 (666)
                                          -++           .+++|.+++||+++++++.+++.+.+|   +++.+.||+||+++..
T Consensus       393 --------------------~~~-----------l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~  441 (666)
T PLN02654        393 --------------------RHS-----------RKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFM  441 (666)
T ss_pred             --------------------cCC-----------hhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCee
Confidence                                000           148999999999999999999998887   7899999999998765


Q ss_pred             hccCCC--CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeC--CCcCccccCChhhhhhccC--CCCeeec
Q 005991          453 SAIDKG--DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVID--GDGWLHT  526 (666)
Q Consensus       453 ~~~~~~--~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~~--~~gw~~T  526 (666)
                      +...+.  ...++++|+|++|++++|+| ++++.++.+   ..|||+|++  |+++.|||++++.+++.+.  .+|||+|
T Consensus       442 ~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~---~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~T  517 (666)
T PLN02654        442 ITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGE---CSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFS  517 (666)
T ss_pred             eccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCC---CceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEe
Confidence            544332  34678999999999999999 555655443   379999999  7899999999999987652  3799999


Q ss_pred             ccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------h
Q 005991          527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------D  594 (666)
Q Consensus       527 GDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~  594 (666)
                      ||+|++|+||+++|+||+||+||+ +|+||+|.|||+++.+||+|.+|+|+|.+++   +.++|+|++.+         +
T Consensus       518 GD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~  596 (666)
T PLN02654        518 GDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRK  596 (666)
T ss_pred             CceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHH
Confidence            999999999999999999999997 8999999999999999999999999998764   57899998643         2


Q ss_pred             HHHHHHHHcCCCcccccccccCcchhHH-HHHHHHhhhhhhhhhccchh--hhhcCCCccceehh
Q 005991          595 VLKDWAASQGIKVIYCFSFRANSHVIFI-ALIHNLCQLYSSKELFRSRC--CYRTGRDSSVFCQE  656 (666)
Q Consensus       595 ~l~~~~~~~~l~~~~~~~~~~p~~i~~v-~~~~~~~gK~~r~~l~~~~~--~~~~~~~~~~~~~~  656 (666)
                      +++++++++ |+     .+++|+.|.++ ++|++.+||++|+.|++...  ..--+..|++-.++
T Consensus       597 ~l~~~~~~~-L~-----~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~~~~~~~~~~~~~~~~  655 (666)
T PLN02654        597 SLILTVRNQ-IG-----AFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPG  655 (666)
T ss_pred             HHHHHHHHh-CC-----CCcCCCEEEECCCCCCCCCcCchHHHHHHHHcCCCCCCCCcccccCHH
Confidence            677888888 88     99999999999 48899999999999988743  12234455544443

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.2e-70  Score=610.70  Aligned_cols=489  Identities=20%  Similarity=0.205  Sum_probs=396.0

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      ..++.+.|.+.++++|+++|+.+.   +     .+.+||+||.++++++|++|.+.   +||+|+|+++|+++|+++++|
T Consensus        18 ~~~~~~~~~~~~~~~p~~~a~~~~---~-----~~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA   86 (539)
T PRK06334         18 GKTVLESFLKLCSEMTTATVCWDE---Q-----LGKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFA   86 (539)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---C-----CCcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHH
Confidence            478999999999999999998643   2     13599999999999999999873   899999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCC-ceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPS-VHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      |+++|++++|+++.++.+++.++|+++++++++++.+....+.+....... ...++.+++....            ..+
T Consensus        87 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~  154 (539)
T PRK06334         87 TLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LSF  154 (539)
T ss_pred             HHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------ccH
Confidence            999999999999999999999999999999999998766655443321110 1123333321100            011


Q ss_pred             HHHHhcCC----CC-----CCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChH
Q 005991          237 LQLQSQGC----SS-----PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLA  307 (666)
Q Consensus       237 ~~~~~~~~----~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~  307 (666)
                      .+....+.    ..     ........++++++|+|||||||.||||++||+++..........+++.++|++++++|++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~  234 (539)
T PRK06334        155 WEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPF  234 (539)
T ss_pred             HHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchH
Confidence            11100000    00     0011235679999999999999999999999999998877776677888999999999999


Q ss_pred             HHHHHHH-HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005991          308 HIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (666)
Q Consensus       308 h~~~~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (666)
                      |.+++.. .+.++..|+++++..  .++..+++.|+++++|++.++|+++..|++......                   
T Consensus       235 h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------  295 (539)
T PRK06334        235 HAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE-------------------  295 (539)
T ss_pred             hhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc-------------------
Confidence            9999875 677899999998875  689999999999999999999999998876321100                   


Q ss_pred             HHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCC-CCC
Q 005991          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD-NLS  462 (666)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-~~~  462 (666)
                                             ...+++|.+++||+++++++.+++.+.+ ++.+++.||+||++.+++...... ...
T Consensus       296 -----------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  352 (539)
T PRK06334        296 -----------------------SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKHE  352 (539)
T ss_pred             -----------------------cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCCC
Confidence                                   0014899999999999999999999888 689999999999987666544322 345


Q ss_pred             CCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhcc-CCCCeeecccEEEEecCCcEEEE
Q 005991          463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI-DGDGWLHTGDIGLWLPGGRLKII  541 (666)
Q Consensus       463 ~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~-~~~gw~~TGDlg~~~~dG~l~i~  541 (666)
                      +++|+|+++++++|+|.+++..++.|+   .|||+|+|++++.|||++++.+.... +++|||+|||+|++|++|+|+|+
T Consensus       353 ~~vG~p~~g~~v~i~d~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~  429 (539)
T PRK06334        353 SCVGMPIRGMDVLIVSEETKVPVSSGE---TGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLK  429 (539)
T ss_pred             CcCceecCCCEEEEEcCCCCccCCCCc---eEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEE
Confidence            689999999999999965666666665   89999999999999999998765432 45789999999999999999999


Q ss_pred             ccCCCeEEcCCeeeeccHHHHHHHhcCcCcce------EEEEEeCCCC-eEEEEEEc--ChhHHHHHHHHcCCCcccccc
Q 005991          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQ------CFIYGDSFNS-CLVAIVAV--DPDVLKDWAASQGIKVIYCFS  612 (666)
Q Consensus       542 GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~------~~V~g~~~~~-~~va~vv~--~~~~l~~~~~~~~l~~~~~~~  612 (666)
                      ||.||+||+ +|++|+|.|||++|.+||+|.+      ++|++.+++. .++++++.  +.++++++++++.++     .
T Consensus       430 GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~  503 (539)
T PRK06334        430 GRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPTSISEVNDILKNSKTS-----S  503 (539)
T ss_pred             eccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccCChHHHHHHHHhcCCc-----c
Confidence            999999997 8999999999999999999998      7888887653 45566654  457889999886466     8


Q ss_pred             cccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          613 FRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       613 ~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      |+.|+.+.+++ +|++.+||++|++|++.
T Consensus       504 ~~~P~~i~~v~~lP~t~~GKi~r~~L~~~  532 (539)
T PRK06334        504 ILKISYHHQVESIPMLGTGKPDYCSLNAL  532 (539)
T ss_pred             cccchheeeecccccccCCcccHHHHHHH
Confidence            99999998885 88888999999999875

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=2.7e-70  Score=618.95  Aligned_cols=510  Identities=16%  Similarity=0.173  Sum_probs=408.4

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ...+..+++|.++++.+|+++|+++.   +...++.+.+||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus        49 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~  125 (628)
T TIGR02316        49 GRTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAM  125 (628)
T ss_pred             CEeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            34566788999988899999999875   322234578999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEcccc---------HHHHHHhhhcC-CCceEEEEeCCCCCCCCCC
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFISEI-PSVHLIVVVGGKDEHLPSL  225 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~-~~l~~ii~~~~~~~~~~~~  225 (666)
                      |||+++|++++|+++.++.+++.+++++++++++|+++..         ...+.+..... +....++.++....... .
T Consensus       126 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-~  204 (628)
T TIGR02316       126 LACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMR-L  204 (628)
T ss_pred             HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcC-c
Confidence            9999999999999999999999999999999999997642         22222222222 23455666653211100 0


Q ss_pred             CCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHH-HhhcccccccCCCcEEEEcC
Q 005991          226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISN-VAGFSLMVQFYPSDIYMSYL  304 (666)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~~~  304 (666)
                         ......+|.++.........+.....++++++|+|||||||.||||+++|++++.. .......+++.++|++++.+
T Consensus       205 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~  281 (628)
T TIGR02316       205 ---IPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSAS  281 (628)
T ss_pred             ---ccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence               00012456665543222112222346899999999999999999999999997543 34445557888999999999


Q ss_pred             ChHHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 005991          305 PLAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTA  378 (666)
Q Consensus       305 pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~  378 (666)
                      |+.|+.+... ++.+|+.|+++++++     .++..+++.|+++++|+++++|+++..|.+.....              
T Consensus       282 ~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------  347 (628)
T TIGR02316       282 DVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW--------------  347 (628)
T ss_pred             CCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc--------------
Confidence            9999998754 678899999999986     37889999999999999999999998775421000              


Q ss_pred             HHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC
Q 005991          379 AYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG  458 (666)
Q Consensus       379 ~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~  458 (666)
                                                .+....++||.+++||+++++++.+++++.+|..+++.||+||++..++.....
T Consensus       348 --------------------------~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~  401 (628)
T TIGR02316       348 --------------------------LRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPG  401 (628)
T ss_pred             --------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCC
Confidence                                      000011489999999999999999999998999999999999998544332221


Q ss_pred             ----CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCC---CcCccccCChhhhhhcc---CCCCeeeccc
Q 005991          459 ----DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGP---IVFQGYYKNEVQTREVI---DGDGWLHTGD  528 (666)
Q Consensus       459 ----~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~---~v~~GY~~~~~~t~~~~---~~~gw~~TGD  528 (666)
                          ....+++|+|+||++++|+|.++++.++.++   .|||+++||   +++.|||++++.+.+.+   ..++||+|||
T Consensus       402 ~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~---~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD  478 (628)
T TIGR02316       402 LDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNE---KGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFD  478 (628)
T ss_pred             CCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCC---cEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCc
Confidence                2356889999999999999965677776665   899999998   57899999998887754   2578999999


Q ss_pred             EEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC-------------
Q 005991          529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD-------------  592 (666)
Q Consensus       529 lg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-------------  592 (666)
                      +|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++   +.++++|++.             
T Consensus       479 ~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~  557 (628)
T TIGR02316       479 WGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHA  557 (628)
T ss_pred             eEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHH
Confidence            9999999999999999999997 8999999999999999999999999997754   5788998864             


Q ss_pred             -hhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccchh
Q 005991          593 -PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSRC  642 (666)
Q Consensus       593 -~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~~  642 (666)
                       .++++++++++ |+     .|++|+.|.+++ +|++.+||++|+.|++...
T Consensus       558 ~~~~i~~~~~~~-L~-----~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~  603 (628)
T TIGR02316       558 VETGMMDCVVRQ-LG-----AVARPARVYFVAALPKTRSGKLLRRSIQALAE  603 (628)
T ss_pred             HHHHHHHHHHHh-cC-----CCcCCCEEEEcCCCCCCCchHHHHHHHHHHHc
Confidence             24688999988 88     999999999995 8899999999999987643

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-70  Score=613.03  Aligned_cols=488  Identities=22%  Similarity=0.283  Sum_probs=410.0

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .++.++|+++++++||++|+++.   +      +.+||+||.++++++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~  119 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA  119 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            48999999999999999999753   2      35999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHH
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (666)
                      +++|++++|+++.++.+++.+++++++++++|++.+....+.......+.+..++.......       .......++++
T Consensus       120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  192 (549)
T PRK07788        120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDE-------PSGSTDETLDD  192 (549)
T ss_pred             HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccc-------cCCcCcccHHH
Confidence            99999999999999999999999999999999998877766555444555554443322111       01123356777


Q ss_pred             HHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHH
Q 005991          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS  318 (666)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~  318 (666)
                      +.......   ..+..+++.++++|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++...+.+
T Consensus       193 ~~~~~~~~---~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~  269 (549)
T PRK07788        193 LIAGSSTA---PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLA  269 (549)
T ss_pred             HhcCCCCC---CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHH
Confidence            76543321   122346788999999999999999999999999888877777888899999999999999999888889


Q ss_pred             HHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhh
Q 005991          319 VYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW  397 (666)
Q Consensus       319 l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~  397 (666)
                      +..|+++++.. +++..+++.++++++|++.++|+++..+++.......                               
T Consensus       270 l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-------------------------------  318 (549)
T PRK07788        270 MALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLA-------------------------------  318 (549)
T ss_pred             HHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccC-------------------------------
Confidence            99999998876 7999999999999999999999999988753211000                               


Q ss_pred             hHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-CCCCCCccCCccCcEEEE
Q 005991          398 DRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKL  476 (666)
Q Consensus       398 d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i  476 (666)
                               ....+++|.+++||+++++++.+++.+.+++.+++.||+||++..+...... ...++++|+|+++++++|
T Consensus       319 ---------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i  389 (549)
T PRK07788        319 ---------KYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKI  389 (549)
T ss_pred             ---------CCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEE
Confidence                     0001489999999999999999999998999999999999998655433221 245678999999999999


Q ss_pred             EecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeee
Q 005991          477 VDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYV  556 (666)
Q Consensus       477 vd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v  556 (666)
                      +| +++..++.|.   .|||+|+|+.++.||+++++.  + . .+|||+|||+|++|+||+++|+||+||+||+ +|++|
T Consensus       390 ~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~--~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v  460 (549)
T PRK07788        390 LD-ENGNEVPRGV---VGRIFVGNGFPFEGYTDGRDK--Q-I-IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVS-GGENV  460 (549)
T ss_pred             EC-CCcCCCCCCC---eEEEEEeCCCccccccCCCcc--c-c-cCCceecCceEEEcCCCCEEEeccCcceEEE-CCEEE
Confidence            99 5666666654   899999999999999998875  2 2 4799999999999999999999999999996 89999


Q ss_pred             ccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHHH-HHH
Q 005991          557 APEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIH  626 (666)
Q Consensus       557 ~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~  626 (666)
                      +|.+||++|.+||+|.+|+|++.+++   +.++|+|+++      .++++++++++ ++     .|++|..+.+++ +|+
T Consensus       461 ~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~-l~-----~~~~P~~i~~v~~lP~  534 (549)
T PRK07788        461 FPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDN-LA-----RYKVPRDVVFLDELPR  534 (549)
T ss_pred             CHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHHHHHHHh-hh-----cCCCCcEEEEeCCCCC
Confidence            99999999999999999999987754   5789999863      47899999998 88     999999999985 888


Q ss_pred             HHhhhhhhhhhccc
Q 005991          627 NLCQLYSSKELFRS  640 (666)
Q Consensus       627 ~~~gK~~r~~l~~~  640 (666)
                      +.+||++|++|++.
T Consensus       535 t~~GKi~r~~L~~~  548 (549)
T PRK07788        535 NPTGKVLKRELREM  548 (549)
T ss_pred             CCCcCEeHHHhhcc
Confidence            88899999999763

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.5e-70  Score=621.85  Aligned_cols=506  Identities=19%  Similarity=0.245  Sum_probs=412.9

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ...+..+++|+++++++||++|+++.   +...++.+.+||+||.+++.++|++|+++|+++||+|+++++|++++++++
T Consensus        54 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~  130 (625)
T TIGR02188        54 GELNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAM  130 (625)
T ss_pred             CEEEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            34567888998999999999999875   322344678999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEcccc---------HHHHHHhhhcCC-CceEEEEeCCCCCCCCCC
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFISEIP-SVHLIVVVGGKDEHLPSL  225 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~  225 (666)
                      |||+++|++++|+++.++++++.+++++++++++|+++..         ...+.+.....+ .++.++.++....... .
T Consensus       131 lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  209 (625)
T TIGR02188       131 LACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP-W  209 (625)
T ss_pred             HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcC-c
Confidence            9999999999999999999999999999999999998653         233444444555 5666666654221110 0


Q ss_pred             CCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHh-hcccccccCCCcEEEEcC
Q 005991          226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSYL  304 (666)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~  304 (666)
                      .   ......|+++...... ........++++++|+|||||||.||||+++|++++.... .....+++.++|++++.+
T Consensus       210 ~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~  285 (625)
T TIGR02188       210 V---EGRDVWWHDLMAKASA-YCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTA  285 (625)
T ss_pred             c---ccccccHHHHHhhcCC-CCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECC
Confidence            0   0112346666544322 1223346789999999999999999999999999765443 334446788999999999


Q ss_pred             ChHHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 005991          305 PLAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTA  378 (666)
Q Consensus       305 pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~  378 (666)
                      |++|+.+... ++.+|..|+++++++     .++..+++.++++++|++.++|+++..|.+......             
T Consensus       286 ~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------  352 (625)
T TIGR02188       286 DVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWV-------------  352 (625)
T ss_pred             CchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCccc-------------
Confidence            9999988755 678899999999986     378999999999999999999999988865311000             


Q ss_pred             HHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC---CccccCcccchhhhhhhcc
Q 005991          379 AYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISAI  455 (666)
Q Consensus       379 ~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~~  455 (666)
                                                 +....+++|.+++||+++++++.+++.+.++   +++++.||+||+++.++..
T Consensus       353 ---------------------------~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~  405 (625)
T TIGR02188       353 ---------------------------KKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITP  405 (625)
T ss_pred             ---------------------------ccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeec
Confidence                                       0001148999999999999999999998875   7899999999998765543


Q ss_pred             CCC--CCCCCCccCCccCcEEEEEecCCCCCCC-CCCCCCccEEEEeC--CCcCccccCChhhhhhccC--CCCeeeccc
Q 005991          456 DKG--DNLSGHVGSPNPACEIKLVDVPEMNYTS-EDQPHPRGEICVRG--PIVFQGYYKNEVQTREVID--GDGWLHTGD  528 (666)
Q Consensus       456 ~~~--~~~~~~vG~p~~~~~v~ivd~~~~~~~~-~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~~--~~gw~~TGD  528 (666)
                      .+.  ...++++|+|++|++++|+| ++++.++ .+   +.|||+|+|  |+++.|||++++.+.+.+.  .+|||+|||
T Consensus       406 ~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g---~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD  481 (625)
T TIGR02188       406 LPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPG---EGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGD  481 (625)
T ss_pred             CCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCC---CeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCc
Confidence            332  34678899999999999999 6666665 44   489999999  6899999999998888763  479999999


Q ss_pred             EEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------hHH
Q 005991          529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------DVL  596 (666)
Q Consensus       529 lg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l  596 (666)
                      +|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++   +.++|+|++++         +++
T Consensus       482 l~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l  560 (625)
T TIGR02188       482 GARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKEL  560 (625)
T ss_pred             eEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHH
Confidence            9999999999999999999997 8999999999999999999999999997654   67899998643         468


Q ss_pred             HHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          597 KDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       597 ~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +++++++ ++     .+++|+.|.+++ +|++.+||++|+.|++.
T Consensus       561 ~~~~~~~-l~-----~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~  599 (625)
T TIGR02188       561 RKHVRKE-IG-----PIAKPDKIRFVPGLPKTRSGKIMRRLLRKI  599 (625)
T ss_pred             HHHHHhh-cC-----CCccCcEEEECCCCCCCCCccchHHHHHHH
Confidence            8899988 88     899999998885 88888899999999887

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=3.5e-70  Score=617.59  Aligned_cols=513  Identities=22%  Similarity=0.282  Sum_probs=414.3

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      ..|++++|.+.++++||++|+.+... .+.....+++||+||.+++.++|++|+++|+++||+|+++++|+++|++++||
T Consensus        24 ~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA  102 (632)
T PRK07529         24 PASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG  102 (632)
T ss_pred             CCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            46899999999999999999987411 11123456799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEcccc-----HHHHHHhhhcCCCceEEEEeCCCCCCC--CCCC----
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT-----LNTLLSFISEIPSVHLIVVVGGKDEHL--PSLP----  226 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~l~~ii~~~~~~~~~--~~~~----  226 (666)
                      |+++| +++|+++.++++++.+++++++++++|++...     .+.+.......+.++.++.++......  +...    
T Consensus       103 ~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  181 (632)
T PRK07529        103 GEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLI  181 (632)
T ss_pred             HHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCccccccccccccccc
Confidence            99999 56999999999999999999999999997543     345555556677788877765432100  0000    


Q ss_pred             -CCCCcEEEehHHHHhcCCCCC-CCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcC
Q 005991          227 -STSGVKLISYLQLQSQGCSSP-QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYL  304 (666)
Q Consensus       227 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~  304 (666)
                       ...+..+.+|.+.+....... .......++++++|+|||||||.||||++||+++++.+......+++.++|++++.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~  261 (632)
T PRK07529        182 RRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGL  261 (632)
T ss_pred             ccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEec
Confidence             001223456666655432211 112234679999999999999999999999999998887766677788999999999


Q ss_pred             ChHHHHHHHH-HHHHHHhCcEEEEecC----C---HHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHH
Q 005991          305 PLAHIYERAN-QIVSVYYGVAVGFYQG----D---NLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLF  376 (666)
Q Consensus       305 pl~h~~~~~~-~~~~l~~G~~~~~~~~----~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~  376 (666)
                      |++|.++... .+.++..|+++++.+.    +   ...+++.++++++|++.++|+++..|.+....             
T Consensus       262 pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------------  328 (632)
T PRK07529        262 PLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-------------  328 (632)
T ss_pred             CchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-------------
Confidence            9999999876 6788999999998751    2   36788999999999999999999988652100             


Q ss_pred             HHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccC
Q 005991          377 TAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAID  456 (666)
Q Consensus       377 ~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~  456 (666)
                                                    ....+++|.+++||+++++++.+++++.+|++++++||+||++++++...
T Consensus       329 ------------------------------~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~  378 (632)
T PRK07529        329 ------------------------------GHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNP  378 (632)
T ss_pred             ------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCC
Confidence                                          00014899999999999999999999989999999999999987766554


Q ss_pred             CCC-CCCCCccCCccCcEEEEEecC-CCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEec
Q 005991          457 KGD-NLSGHVGSPNPACEIKLVDVP-EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP  534 (666)
Q Consensus       457 ~~~-~~~~~vG~p~~~~~v~ivd~~-~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~  534 (666)
                      ... ...+++|.|+|+++++|+..+ ++.+..+..+++.|||+|+|++++.||++++ .+.+.|..+|||+|||+|++|+
T Consensus       379 ~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TGDlg~~d~  457 (632)
T PRK07529        379 PDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGDLGRIDA  457 (632)
T ss_pred             ccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-cccccccCCCceEcCcEEEEcC
Confidence            432 467899999999999997533 3311122333458999999999999999865 4556666789999999999999


Q ss_pred             CCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCC
Q 005991          535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGI  605 (666)
Q Consensus       535 dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l  605 (666)
                      ||+++|.||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++.      ++++++|++++ +
T Consensus       458 dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l~~~~~~~-l  535 (632)
T PRK07529        458 DGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDH-I  535 (632)
T ss_pred             CceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHHHHHHHHh-c
Confidence            9999999999999996 8999999999999999999999999997754   5789999853      57899999998 6


Q ss_pred             CcccccccccCcchhHHH-HHHHHhhhhhhhhhccchh
Q 005991          606 KVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSRC  642 (666)
Q Consensus       606 ~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~~  642 (666)
                      +    ..+++|+.|.+++ +|++.+||++|++|++...
T Consensus       536 ~----~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~  569 (632)
T PRK07529        536 A----ERAAVPKHVRILDALPKTAVGKIFKPALRRDAI  569 (632)
T ss_pred             c----hhccCCcEEEEecCCCCCCCCcccHHHHHHHHH
Confidence            4    1478999999995 8888889999999998833

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.4e-71  Score=538.77  Aligned_cols=490  Identities=21%  Similarity=0.279  Sum_probs=426.5

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      ..++.+++.++|+++||++|+++.     +    +.+||+||+++++++|.+|+++|+++||+|.+.+||..++++++||
T Consensus        27 d~~l~d~L~~~A~~~pdriAv~d~-----~----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FA   97 (542)
T COG1021          27 DRTLTDILTDHAARYPDRIAVIDG-----E----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFA   97 (542)
T ss_pred             CCcHHHHHHHHHhhcCCceEEecC-----c----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHH
Confidence            478999999999999999999743     2    3499999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccc-----cHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcE
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ-----TLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~-----~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~  232 (666)
                      ++++|+.+|.--|.....+|.+....++++.+|++..     ..+.+.+...+.+.++++++.++.+..           
T Consensus        98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~-----------  166 (542)
T COG1021          98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP-----------  166 (542)
T ss_pred             HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc-----------
Confidence            9999999999889999999999999999999998864     345666777888999999988654311           


Q ss_pred             EEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHH
Q 005991          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER  312 (666)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  312 (666)
                       ...+..+........+..+.++++++++..+.||||.||-+..||.....+++...+..++++.+++++.+|..|.|-+
T Consensus       167 -~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfpl  245 (542)
T COG1021         167 -SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPL  245 (542)
T ss_pred             -chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCC
Confidence             1122222222233345567788999999999999999999999999999988888888999999999999999999988


Q ss_pred             HH--HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005991          313 AN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (666)
Q Consensus       313 ~~--~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (666)
                      ..  .+..++.|+++|+.+ .++......|+++++|+...||.+...|++......                        
T Consensus       246 ssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~------------------------  301 (542)
T COG1021         246 SSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWER------------------------  301 (542)
T ss_pred             CCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhccc------------------------
Confidence            86  788999999999987 899999999999999999999999988877533211                        


Q ss_pred             CCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCC-CCCCCCCccCC
Q 005991          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK-GDNLSGHVGSP  468 (666)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p  468 (666)
                                        ...+|||.+-+||+.+++++.+++...+||.+.+.|||.|.-...+-... .+.-..+-|+|
T Consensus       302 ------------------~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrP  363 (542)
T COG1021         302 ------------------ADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRP  363 (542)
T ss_pred             ------------------CCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchHheeecCCCc
Confidence                              11159999999999999999999999999999999999996543332221 12334578999


Q ss_pred             c-cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCe
Q 005991          469 N-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNI  547 (666)
Q Consensus       469 ~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~  547 (666)
                      + |.-|++|+| ++++++++|+   +|+|..|||..++|||+.|+.++.+|+.+|||+|||++++|+||+|.+.||.||+
T Consensus       364 lsP~DEvrvvD-~dg~pv~pGE---~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQ  439 (542)
T COG1021         364 LSPDDEVRVVD-ADGNPVAPGE---VGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQ  439 (542)
T ss_pred             CCCcceeEEec-CCCCCCCCCC---cceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhh
Confidence            7 789999999 6778777775   9999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh-----hHHHHHHHHcCCCcccccccccCcch
Q 005991          548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP-----DVLKDWAASQGIKVIYCFSFRANSHV  619 (666)
Q Consensus       548 ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-----~~l~~~~~~~~l~~~~~~~~~~p~~i  619 (666)
                      |+ ++||+|..+|||+.|..||.|.+|++++.+|+   ++.+|+|++.+     .+++.++++.|+.     .|++|+.|
T Consensus       440 IN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~~~qlr~~L~~~GlA-----a~K~PDri  513 (542)
T COG1021         440 IN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRFLRERGLA-----AFKLPDRI  513 (542)
T ss_pred             hc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCCHHHHHHHHHHcchh-----hhcCCcce
Confidence            99 79999999999999999999999999998875   78999998743     6899999999998     99999999


Q ss_pred             hHHH-HHHHHhhhhhhhhhccc
Q 005991          620 IFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       620 ~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      .+++ +|.+..||||||.|+|.
T Consensus       514 e~v~~~P~T~VGKIdKk~Lr~~  535 (542)
T COG1021         514 EFVDSLPLTAVGKIDKKALRRR  535 (542)
T ss_pred             eecccCCCcccccccHHHHHHH
Confidence            9996 88888899999999965

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-69  Score=615.13  Aligned_cols=521  Identities=18%  Similarity=0.243  Sum_probs=416.2

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ..+..+++|.++++++||++|+++.   +...+..+.+||+||+++++++|++|.++|+++||+|+++++|+++++++++
T Consensus        65 ~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l  141 (637)
T PRK00174         65 ELNVSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAML  141 (637)
T ss_pred             EeEHHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3445678888899999999999875   2222345779999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEcccc---------HHHHHHhhhcCCCceEEEEeCCCCCCCCCCCC
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPS  227 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~  227 (666)
                      ||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.+....++.++.++.++....... .  
T Consensus       142 A~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--  218 (637)
T PRK00174        142 ACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVD-W--  218 (637)
T ss_pred             HHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcC-c--
Confidence            999999999999999999999999999999999997653         2334444445566777776654321110 0  


Q ss_pred             CCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHh-hcccccccCCCcEEEEcCCh
Q 005991          228 TSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSYLPL  306 (666)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~pl  306 (666)
                       .......|+++...... ..+.....++++++|+|||||||.||||+++|++++..+. .....+++.++|++++.+|+
T Consensus       219 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  296 (637)
T PRK00174        219 -VEGRDLWWHELVAGASD-ECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADV  296 (637)
T ss_pred             -CCCCcccHHHHHhhcCC-CCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCc
Confidence             01112356666543221 1223345679999999999999999999999999875443 33344678889999999999


Q ss_pred             HHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 005991          307 AHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAY  380 (666)
Q Consensus       307 ~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  380 (666)
                      +|..+... ++.+|+.|+++++++     .++..+++.|+++++|++.++|+++..|.+......               
T Consensus       297 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---------------  361 (637)
T PRK00174        297 GWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP---------------  361 (637)
T ss_pred             hHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc---------------
Confidence            99998765 678899999999875     378999999999999999999999988865311000               


Q ss_pred             HHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC---CccccCcccchhhhhhhccCC
Q 005991          381 NSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISAIDK  457 (666)
Q Consensus       381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~~~~  457 (666)
                                               .....++||.+++||+++++++.+++.+.++   +++++.||+||+++.++...+
T Consensus       362 -------------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~  416 (637)
T PRK00174        362 -------------------------KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLP  416 (637)
T ss_pred             -------------------------ccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCC
Confidence                                     0000148999999999999999999988776   789999999999876554332


Q ss_pred             C--CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeC--CCcCccccCChhhhhhcc--CCCCeeecccEEE
Q 005991          458 G--DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVI--DGDGWLHTGDIGL  531 (666)
Q Consensus       458 ~--~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~--~~~gw~~TGDlg~  531 (666)
                      .  ....+++|+|++|++++|+| ++++.++.+.   .|||+|+|  |++++|||++++.+.+.+  ..+|||+|||+|+
T Consensus       417 ~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~---~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~  492 (637)
T PRK00174        417 GATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGE---GGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGAR  492 (637)
T ss_pred             CCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCC---cEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEE
Confidence            2  24567899999999999999 5666666554   89999999  699999999999888776  3579999999999


Q ss_pred             EecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC---------hhHHHHH
Q 005991          532 WLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD---------PDVLKDW  599 (666)
Q Consensus       532 ~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~---------~~~l~~~  599 (666)
                      +|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.   +.++|+|++.         .++++++
T Consensus       493 ~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~  571 (637)
T PRK00174        493 RDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNW  571 (637)
T ss_pred             EcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999999997 7999999999999999999999999997654   6799999864         2578889


Q ss_pred             HHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccchhhh-hcCCCccceehh
Q 005991          600 AASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSRCCY-RTGRDSSVFCQE  656 (666)
Q Consensus       600 ~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~~~~-~~~~~~~~~~~~  656 (666)
                      ++++ ++     .+++|..|.+++ +|++.+||++|++|++..... ..+..+++-.++
T Consensus       572 l~~~-l~-----~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~~~~~~~~~~  624 (637)
T PRK00174        572 VRKE-IG-----PIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGEEILGDTSTLADPS  624 (637)
T ss_pred             HHhh-cC-----CccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCCCCCCCcccccCHH
Confidence            9888 88     999999999995 888888999999998873322 234444443333

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.2e-69  Score=611.99  Aligned_cols=503  Identities=22%  Similarity=0.316  Sum_probs=392.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH
Q 005991           72 FPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW  151 (666)
Q Consensus        72 ~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~  151 (666)
                      ++......|+.++|.++++++||++|+.+.   +. .++++++||+||.++++++|++|.+.|+++||+|+++++|+++|
T Consensus        32 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~~-~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~  107 (614)
T PRK08180         32 EPLGDYPRRLTDRLVHWAQEAPDRVFLAER---GA-DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEH  107 (614)
T ss_pred             CCCCCcCccHHHHHHHHHHHCCCCceeeec---cC-CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHH
Confidence            333445679999999999999999999764   21 23467899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEecCCCCC-----HHHHHHHHHhcCceEEEEcccc--HHHHHHhhhcCCCceEEEEeCCCCCCCCC
Q 005991          152 LIVDHACSAYSYISVPLYDTLG-----PDAVKYVVNHAEIEAIFCIPQT--LNTLLSFISEIPSVHLIVVVGGKDEHLPS  224 (666)
Q Consensus       152 ~~~~lA~~~~G~~~vpl~~~~~-----~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~l~~ii~~~~~~~~~~~  224 (666)
                      +++++||+++|+++||+++.++     .+++.+++++++++++|++...  ...+.... . ...+ ++..+....    
T Consensus       108 ~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~-~~~~-~i~~~~~~~----  180 (614)
T PRK08180        108 ALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVV-P-ADVE-VVAVRGAVP----  180 (614)
T ss_pred             HHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhc-c-CCce-EEEecCCCC----
Confidence            9999999999999999999998     7999999999999999997542  22221111 1 1222 333222100    


Q ss_pred             CCCCCCcEEEehHHHHhcCCCCC--CCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccC--CCcEE
Q 005991          225 LPSTSGVKLISYLQLQSQGCSSP--QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY--PSDIY  300 (666)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~d~~  300 (666)
                           .....+|+++........  .......++|+++|+|||||||.||||++||+++.+.+......+++.  .++++
T Consensus       181 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~  255 (614)
T PRK08180        181 -----GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVL  255 (614)
T ss_pred             -----CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEE
Confidence                 001245666654321111  111234679999999999999999999999999998887766655553  56899


Q ss_pred             EEcCChHHHHHHHH-HHHHHHhCcEEEEec--CC---HHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHH
Q 005991          301 MSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GD---NLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREK  374 (666)
Q Consensus       301 l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  374 (666)
                      ++++|++|.+++.. ++.+++.|+++++.+  ++   ...+++.++++++|+++++|++|..|++......         
T Consensus       256 l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~---------  326 (614)
T PRK08180        256 VDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDA---------  326 (614)
T ss_pred             EEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhch---------
Confidence            99999999999865 567899999999875  23   3578889999999999999999999876432110         


Q ss_pred             HHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHH----hC--CccccCcccchh
Q 005991          375 LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC----FG--CQVMEGYGMTET  448 (666)
Q Consensus       375 l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~----~~--~~v~~~YG~TE~  448 (666)
                                                   .......+++|.+++||+++++++.+++++.    +|  +++++.||+||+
T Consensus       327 -----------------------------~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~  377 (614)
T PRK08180        327 -----------------------------ALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTET  377 (614)
T ss_pred             -----------------------------hhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeeccccc
Confidence                                         0111122589999999999999999998874    33  679999999999


Q ss_pred             hhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeeccc
Q 005991          449 SCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGD  528 (666)
Q Consensus       449 ~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGD  528 (666)
                      +.+++.........+++|+|+||++++|+|.        +   ..|||+|+|++++.|||++|+.|++.|+.||||+|||
T Consensus       378 ~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~--------~---~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGD  446 (614)
T PRK08180        378 APSATFTTGPLSRAGNIGLPAPGCEVKLVPV--------G---GKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGD  446 (614)
T ss_pred             CCceEecccccCCCCcccCccCCcEEEEecC--------C---CCcEEEEecCccchhhcCChhHhHhhcccCCceeccc
Confidence            8766655444566789999999999999982        1   2699999999999999999999999998899999999


Q ss_pred             EEEE----ecCCcEEEEccCCCeEEcCCeeeec--cHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChh--------
Q 005991          529 IGLW----LPGGRLKIIDRKKNIFKLAQGEYVA--PEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPD--------  594 (666)
Q Consensus       529 lg~~----~~dG~l~i~GR~~d~ikl~~G~~v~--p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~--------  594 (666)
                      +|++    |++|+|+|+||+||+||+++|++|+  |.|||.++.+||.|.+|+|+|.++ +.+.|+|+++++        
T Consensus       447 lg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~-~~~~a~V~~~~~~~~~~~~~  525 (614)
T PRK08180        447 AVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR-DEIGLLVFPNLDACRRLAGL  525 (614)
T ss_pred             eEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCC-CceEEEEEcCHHHHHHHHhh
Confidence            9999    5689999999999999988899777  778899999999999999999984 578899998654        


Q ss_pred             -------------HHHHHHHHcCCCccc---ccccccCcchhHHH-HHHHHhhhhhhh-hhccch
Q 005991          595 -------------VLKDWAASQGIKVIY---CFSFRANSHVIFIA-LIHNLCQLYSSK-ELFRSR  641 (666)
Q Consensus       595 -------------~l~~~~~~~~l~~~~---~~~~~~p~~i~~v~-~~~~~~gK~~r~-~l~~~~  641 (666)
                                   +++++++++ |....   ...+..|+++.+++ +|.+.+||+..+ +++|.+
T Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~  589 (614)
T PRK08180        526 LADASLAEVLAHPAVRAAFRER-LARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRA  589 (614)
T ss_pred             cccCCHHHHhcCHHHHHHHHHH-HHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHH
Confidence                         366777766 65111   11223899999986 566656877766 555553

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=2.5e-69  Score=663.37  Aligned_cols=549  Identities=15%  Similarity=0.162  Sum_probs=424.5

Q ss_pred             hHHHhhHHHHhhccccCCcCCCccccCCCCccccccCCCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHH
Q 005991            4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD   83 (666)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~   83 (666)
                      ..++++|..+|++++++|+.++++++|..+.....        ++....            ...    ++  ....++++
T Consensus       187 ~~l~~~f~~lL~~~~~~p~~~l~~l~~~~~~~~~~--------~~~~~~------------~~~----~~--~~~~~l~~  240 (1389)
T TIGR03443       187 TIVADQLAQLLSAASSNPDEPIGKVSLITPSQKSL--------LPDPTK------------DLD----WS--GFRGAIHD  240 (1389)
T ss_pred             HHHHHHHHHHHHHHHhCcCCceecccCCCHHHHhh--------hhcccc------------ccC----cC--cccCcHHH
Confidence            46788999999999999999999998765442100        000000            000    00  11368999


Q ss_pred             HHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005991           84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (666)
Q Consensus        84 ~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~  163 (666)
                      +|+++++++||++|+++...........+.+||+||.++++++|++|.+.|+++|++|+|+++|+++|+++++||+++|+
T Consensus       241 ~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~  320 (1389)
T TIGR03443       241 IFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGA  320 (1389)
T ss_pred             HHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCc
Confidence            99999999999999986411000012346799999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHHhcCceEEEEcccc---HHHHHHhhhc----CCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---LNTLLSFISE----IPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       164 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---~~~~~~~~~~----~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      +++|++|.++.+++.++++++++++++++...   ...+......    ...+..+...+...  ...    .... ...
T Consensus       321 ~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~-~~~  393 (1389)
T TIGR03443       321 TFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGS--LVG----GSLE-GGE  393 (1389)
T ss_pred             EEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccc--ccc----cccc-ccc
Confidence            99999999999999999999999999987542   1111111110    01111111111100  000    0000 000


Q ss_pred             HHHHhcCC--CCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH
Q 005991          237 LQLQSQGC--SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN  314 (666)
Q Consensus       237 ~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (666)
                      .+......  ..........++++++|+|||||||.||||+++|+++.+.+.+....+++.++|++++++|++|+.++..
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~  473 (1389)
T TIGR03443       394 TDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRD  473 (1389)
T ss_pred             ccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHH
Confidence            00000000  0001112346899999999999999999999999999999888888888999999999999999999988


Q ss_pred             HHHHHHhCcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005991          315 QIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (666)
Q Consensus       315 ~~~~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (666)
                      ++.+|+.|+++++.+    .++..+++.|+++++|++.++|+++..|......                           
T Consensus       474 i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~---------------------------  526 (1389)
T TIGR03443       474 MFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQATT---------------------------  526 (1389)
T ss_pred             HHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcccc---------------------------
Confidence            999999999999876    3688999999999999999999999877531000                           


Q ss_pred             CCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCC----------
Q 005991          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD----------  459 (666)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~----------  459 (666)
                                        ...++|.+++||+++++...+.+.... +++++|+||+||++..++......          
T Consensus       527 ------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~  588 (1389)
T TIGR03443       527 ------------------PIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKN  588 (1389)
T ss_pred             ------------------cCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhc
Confidence                              014799999999999999999888765 789999999999987665432211          


Q ss_pred             -CCCCCccCCccCcEEEEEecCC-CCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC------------------
Q 005991          460 -NLSGHVGSPNPACEIKLVDVPE-MNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID------------------  519 (666)
Q Consensus       460 -~~~~~vG~p~~~~~v~ivd~~~-~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~------------------  519 (666)
                       ....++|+|+++++++|+|.++ ...++.|.   .|||||+|+++++||+++|+.|+++|.                  
T Consensus       589 ~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~---~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~  665 (1389)
T TIGR03443       589 LKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGE---VGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENN  665 (1389)
T ss_pred             ccCcCcCCCccCCCEEEEECCccCCCcCCCCC---ceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccc
Confidence             1245799999999999999543 34455554   899999999999999999999999883                  


Q ss_pred             ----------CCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCC---CCeEE
Q 005991          520 ----------GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLV  586 (666)
Q Consensus       520 ----------~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~v  586 (666)
                                .++||+|||+|++++||.|+|+||+||+||+ +|+||+|.|||++|.+||.|.+++|++.++   .+.++
T Consensus       666 ~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lv  744 (1389)
T TIGR03443       666 KPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLV  744 (1389)
T ss_pred             cccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEE
Confidence                      3689999999999999999999999999997 899999999999999999999999987543   35799


Q ss_pred             EEEEcC--------------------------------hhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhh
Q 005991          587 AIVAVD--------------------------------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYS  633 (666)
Q Consensus       587 a~vv~~--------------------------------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~  633 (666)
                      |+|+++                                .++++++++++ |+     .|++|..+++++ +|++.+||++
T Consensus       745 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Lp-----~y~~P~~~~~~~~lP~t~~GKid  818 (1389)
T TIGR03443       745 SYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKK-LP-----SYAIPTVIVPLKKLPLNPNGKVD  818 (1389)
T ss_pred             EEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhh-CC-----cccCCceEEEcccCCCCCCcccc
Confidence            999875                                13577888887 88     999999998885 8888899999


Q ss_pred             hhhhccc
Q 005991          634 SKELFRS  640 (666)
Q Consensus       634 r~~l~~~  640 (666)
                      |++|++.
T Consensus       819 r~~L~~~  825 (1389)
T TIGR03443       819 KPALPFP  825 (1389)
T ss_pred             HhhcCCC
Confidence            9999865

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.5e-69  Score=601.25  Aligned_cols=497  Identities=20%  Similarity=0.268  Sum_probs=413.1

Q ss_pred             CCCCHHHHHHHHHH-hCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           77 EIGTLHDNFIYAVE-NYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        77 ~~~tl~~~~~~~a~-~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ..+.+++++.++++ .+|+++|+.+.   +..  ..+.+||+||.++++++|++|.++|+++||+|+++++|+++|++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  115 (570)
T PRK04319         41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL  115 (570)
T ss_pred             ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence            45667789988887 57999999875   322  3467999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (666)
                      +||+++|++++|+++.++++++.+++++++++++|++.........  ..++.++.++.+++....        .....+
T Consensus       116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~  185 (570)
T PRK04319        116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVEE--------GPGTLD  185 (570)
T ss_pred             HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcCC--------CcCccC
Confidence            9999999999999999999999999999999999998765443321  245666677766543210        112245


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH-
Q 005991          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-  314 (666)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-  314 (666)
                      +.++...... ..+.....++++++|+|||||||.||||+++|+++++.+......+++.++|++++..|++|.++... 
T Consensus       186 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~  264 (570)
T PRK04319        186 FNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYG  264 (570)
T ss_pred             HHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHH
Confidence            6665544322 12233456789999999999999999999999999988877777788899999999999999988665 


Q ss_pred             HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991          315 QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (666)
Q Consensus       315 ~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (666)
                      ++.++..|+++++..  +++..+++.|+++++|++.++|++++.|........                           
T Consensus       265 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------  317 (570)
T PRK04319        265 IFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLV---------------------------  317 (570)
T ss_pred             HHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCccc---------------------------
Confidence            678999999999875  789999999999999999999999998865210000                           


Q ss_pred             CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-CCCCCCccCCccC
Q 005991          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPA  471 (666)
Q Consensus       393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~  471 (666)
                           .        ....+++|.+++||+++++++.+++++.+|.++++.||+||++..++..... ...++++|+|+|+
T Consensus       318 -----~--------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g  384 (570)
T PRK04319        318 -----K--------KYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPG  384 (570)
T ss_pred             -----c--------cCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCC
Confidence                 0        0001489999999999999999999998999999999999998765443332 3457899999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCccEEEEeC--CCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 005991          472 CEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (666)
Q Consensus       472 ~~v~ivd~~~~~~~~~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik  549 (666)
                      ++++|+| +++..++.|   +.|||+++|  ++++.|||++++.|++.| .+|||+|||+|+++++|+++++||+||+||
T Consensus       385 ~~~~i~d-~~~~~~~~g---~~Gel~i~~~~~~~~~GY~~~~~~~~~~~-~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~  459 (570)
T PRK04319        385 IEAAIVD-DQGNELPPN---RMGNLAIKKGWPSMMRGIWNNPEKYESYF-AGDWYVSGDSAYMDEDGYFWFQGRVDDVIK  459 (570)
T ss_pred             CEEEEEC-CCCCCCCCC---CceEEEEcCCCChHHhHhcCCHHHhhhhh-cCCceEeCcEEEECCCeeEEEEecCCCEEE
Confidence            9999999 455555444   489999997  899999999999999999 489999999999999999999999999999


Q ss_pred             cCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------hHHHHHHHHcCCCcccccccccCc
Q 005991          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------DVLKDWAASQGIKVIYCFSFRANS  617 (666)
Q Consensus       550 l~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~~l~~~~~~~~~~p~  617 (666)
                      + +|++|+|.|||+++.+||.|.+++|++.+++   +.++|+|++.+         ++++++++++ ++     .|++|+
T Consensus       460 ~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~-l~-----~~~~P~  532 (570)
T PRK04319        460 T-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKG-LG-----AHAAPR  532 (570)
T ss_pred             E-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHh-cc-----cccCCc
Confidence            7 8999999999999999999999999997754   67888888642         4688899988 88     999999


Q ss_pred             chhHHH-HHHHHhhhhhhhhhccch
Q 005991          618 HVIFIA-LIHNLCQLYSSKELFRSR  641 (666)
Q Consensus       618 ~i~~v~-~~~~~~gK~~r~~l~~~~  641 (666)
                      .+.+++ +|++.+||++|++|++..
T Consensus       533 ~i~~v~~iP~t~~GKv~r~~L~~~~  557 (570)
T PRK04319        533 EIEFKDKLPKTRSGKIMRRVLKAWE  557 (570)
T ss_pred             EEEEeCCCCCCCchhhhHHHHHHHH
Confidence            999995 888888999999998763

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=2.5e-68  Score=594.72  Aligned_cols=492  Identities=21%  Similarity=0.297  Sum_probs=410.0

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .++.++|.+.++.+|+++|+++.   +...++++.+||+||.++++++|++|.+.|+++|++|+++++|+++|+++++||
T Consensus        24 ~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~  100 (547)
T PRK13295         24 RTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLAC  100 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence            58999999999999999999875   322234578999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEcccc-----HHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEE
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT-----LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL  233 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~  233 (666)
                      +++|++++|+++.++.+++.++++.+++++++++...     .+.+.+....++.++.++.++...             .
T Consensus       101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~  167 (547)
T PRK13295        101 SRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG-------------A  167 (547)
T ss_pred             HhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC-------------c
Confidence            9999999999999999999999999999999998753     233444444556666676654321             0


Q ss_pred             EehHHHHhcCC-----C--CCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCCh
Q 005991          234 ISYLQLQSQGC-----S--SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPL  306 (666)
Q Consensus       234 ~~~~~~~~~~~-----~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl  306 (666)
                      .++.++.....     .  .........++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~  247 (547)
T PRK13295        168 DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPM  247 (547)
T ss_pred             cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCc
Confidence            12333322110     0  0111223467899999999999999999999999999888877777888999999999999


Q ss_pred             HHHHHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005991          307 AHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (666)
Q Consensus       307 ~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (666)
                      +|.+++.. ++.++..|+++++.+ .++..+++.++++++|++.++|.++..+........                   
T Consensus       248 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~-------------------  308 (547)
T PRK13295        248 AHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESG-------------------  308 (547)
T ss_pred             hhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccC-------------------
Confidence            99998766 677899999999887 699999999999999999999999988765211000                   


Q ss_pred             HHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC--CCCC
Q 005991          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--DNLS  462 (666)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~  462 (666)
                                             ...+++|.+++||+++++++.+++++.+++++++.||+||++.+++.....  ....
T Consensus       309 -----------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~  365 (547)
T PRK13295        309 -----------------------RPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERAS  365 (547)
T ss_pred             -----------------------CCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhcc
Confidence                                   001479999999999999999999988999999999999998765443322  1335


Q ss_pred             CCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 005991          463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID  542 (666)
Q Consensus       463 ~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G  542 (666)
                      .++|+|+++++++|+| ++++.++.++   .|||+|+|++++.||+++|+.|++.  .+|||+|||+|+++++|++++.|
T Consensus       366 ~~~G~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~g  439 (547)
T PRK13295        366 TTDGCPLPGVEVRVVD-ADGAPLPAGQ---IGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRISG  439 (547)
T ss_pred             CccccccCCcEEEEEC-CCCCCCCCCC---CCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEEe
Confidence            6899999999999999 5566666655   8999999999999999999999876  57899999999999999999999


Q ss_pred             cCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCccccccc
Q 005991          543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSF  613 (666)
Q Consensus       543 R~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~  613 (666)
                      |.||+||+ +|++|+|.+||++|.++++|.+++|++.++.   +.++++|+++      .+++.+++++..++     .+
T Consensus       440 R~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~~l~-----~~  513 (547)
T PRK13295        440 RSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVA-----KQ  513 (547)
T ss_pred             ccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHHHHHHHHHhccCc-----cc
Confidence            99999997 8999999999999999999999999997644   5789999864      36788888874487     89


Q ss_pred             ccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          614 RANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       614 ~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++|..+.+++ +|++.+||++|++|++.
T Consensus       514 ~~P~~i~~v~~lP~t~sgK~~r~~L~~~  541 (547)
T PRK13295        514 YIPERLVVRDALPRTPSGKIQKFRLREM  541 (547)
T ss_pred             cCCcEEEEeccCCCCCCccccHHHHHHH
Confidence            9999999995 88888899999999764

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.5e-69  Score=707.13  Aligned_cols=522  Identities=17%  Similarity=0.221  Sum_probs=434.4

Q ss_pred             hHHHhhHHHHhhccccCCcCCCccccCCCCccccccCCCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHH
Q 005991            4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD   83 (666)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~   83 (666)
                      ..++++|.++|++++++|+.+++++++..+....                   .+...+..      ...+.+...++++
T Consensus      3045 ~~~~~~~~~~l~~~~~~p~~~~~~l~~l~~~~~~-------------------~~~~~~~~------~~~~~~~~~~~~~ 3099 (3956)
T PRK12467       3045 ERLAESFDRLLQAMLNNPAARLGELPTLAAHERR-------------------QVLHAWNA------TAAAYPSERLVHQ 3099 (3956)
T ss_pred             HHHHHHHHHHHHHHHhCcCCchhhccCCCHHHHH-------------------HHHHhhcc------CCCCCCccccHHH
Confidence            5688999999999999999999999987654210                   00000100      0111234479999


Q ss_pred             HHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005991           84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (666)
Q Consensus        84 ~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~  163 (666)
                      +|+++++++||++|+++.   +.      .+||+||+++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|+
T Consensus      3100 l~~~~a~~~p~~~Av~~~---~~------~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa 3170 (3956)
T PRK12467       3100 LIEAQVARTPEAPALVFG---DQ------QLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGG 3170 (3956)
T ss_pred             HHHHHHHhCCCcceEeeC---Cc------ccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCc
Confidence            999999999999999875   33      499999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcC
Q 005991          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQG  243 (666)
Q Consensus       164 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (666)
                      ++|||++.++.+++.+++++++++++|++......+..    .... .++.++...                     ...
T Consensus      3171 ~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~----~~~~-~~~~~~~~~---------------------~~~ 3224 (3956)
T PRK12467       3171 AYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPA----PAGD-TALTLDRLD---------------------LNG 3224 (3956)
T ss_pred             EeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhccc----ccCC-ceeeecchh---------------------hcc
Confidence            99999999999999999999999999998765433211    1111 122222110                     001


Q ss_pred             CCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCc
Q 005991          244 CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGV  323 (666)
Q Consensus       244 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~  323 (666)
                      .....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++++|++|+.+...++.+|+.|+
T Consensus      3225 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~ 3304 (3956)
T PRK12467       3225 YSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGG 3304 (3956)
T ss_pred             cCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHHhCCC
Confidence            11112223457899999999999999999999999999999998888899999999999999999999988999999999


Q ss_pred             EEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHH
Q 005991          324 AVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL  400 (666)
Q Consensus       324 ~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~  400 (666)
                      ++++.+   .++..+++.|+++++|++.++|+++..+.+....                                     
T Consensus      3305 ~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~------------------------------------- 3347 (3956)
T PRK12467       3305 CLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG------------------------------------- 3347 (3956)
T ss_pred             EEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc-------------------------------------
Confidence            999987   5899999999999999999999999887652100                                     


Q ss_pred             hhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCC-----CCCCCccCCccCcEE
Q 005991          401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD-----NLSGHVGSPNPACEI  474 (666)
Q Consensus       401 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~p~~~~~v  474 (666)
                             ...+++|.+++||+++++++.+.|.+.+ ++.++|.||+||++..++......     ....++|+|++|+++
T Consensus      3348 -------~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~ 3420 (3956)
T PRK12467       3348 -------ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSI 3420 (3956)
T ss_pred             -------cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEE
Confidence                   0014799999999999999999998776 678999999999987766443221     234689999999999


Q ss_pred             EEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCC-------CeeecccEEEEecCCcEEEEccCCCe
Q 005991          475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGD-------GWLHTGDIGLWLPGGRLKIIDRKKNI  547 (666)
Q Consensus       475 ~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~-------gw~~TGDlg~~~~dG~l~i~GR~~d~  547 (666)
                      +|+| ++++.++.|.   .|||+|+|+++++||+|+|+.|+++|..+       +||+|||+|++++||+|+|+||+||+
T Consensus      3421 ~v~d-~~~~~vp~G~---~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~ 3496 (3956)
T PRK12467       3421 YVLD-GQLNPVPVGV---AGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQ 3496 (3956)
T ss_pred             EEEC-CCCCCCCCCC---CceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccce
Confidence            9999 6677777665   89999999999999999999999999554       46999999999999999999999999


Q ss_pred             EEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCC--CCeEEEEEEcCh------hHHHHHHHHcCCCcccccccccCcch
Q 005991          548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF--NSCLVAIVAVDP------DVLKDWAASQGIKVIYCFSFRANSHV  619 (666)
Q Consensus       548 ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~------~~l~~~~~~~~l~~~~~~~~~~p~~i  619 (666)
                      ||+ +|+||+|.|||++|.+||+|.+|+|++...  .+.++|+|+++.      ++++++++++ |+     .|++|..|
T Consensus      3497 iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~-Lp-----~y~vP~~~ 3569 (3956)
T PRK12467       3497 VKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQGDWRETLRDHLAAS-LP-----DYMVPAQL 3569 (3956)
T ss_pred             Eee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCCcccHHHHHHHHhcc-CC-----hhhCCCee
Confidence            998 899999999999999999999999997642  468999999753      6789999988 98     99999999


Q ss_pred             hHHH-HHHHHhhhhhhhhhccc
Q 005991          620 IFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       620 ~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++++ +|.+.+||++|++|.+.
T Consensus      3570 ~~l~~lP~t~~GKidR~~L~~~ 3591 (3956)
T PRK12467       3570 LVLAAMPLGPNGKVDRKALPDP 3591 (3956)
T ss_pred             eeeccCCCCCCCccchhhcCCC
Confidence            9995 88888899999999886

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.2e-68  Score=592.87  Aligned_cols=499  Identities=22%  Similarity=0.345  Sum_probs=416.0

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHhHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ..|+.++|.+.++++|+++|+.+.   +      +.+||+||.+++.++|.+|.+. |+++|++|+++++|+++|+++++
T Consensus         9 ~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   79 (546)
T PRK08314          9 ETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYY   79 (546)
T ss_pred             CCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHH
Confidence            458999999999999999999864   3      3599999999999999999999 99999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCC--CC-----CCCC----
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKD--EH-----LPSL----  225 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~--~~-----~~~~----  225 (666)
                      ||+++|++++|+++.++.+++.++++++++++++++......+.+....+ .++.++..+...  ..     ...+    
T Consensus        80 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (546)
T PRK08314         80 AILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAWLRAE  158 (546)
T ss_pred             HHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-CcceEEEecchhhcccccccCcccccccc
Confidence            99999999999999999999999999999999999988777666544433 234444332100  00     0000    


Q ss_pred             ---CCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEE
Q 005991          226 ---PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMS  302 (666)
Q Consensus       226 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~  302 (666)
                         ....+.....|++.......  .......++++++|+|||||||.||||++||++++..+......+++.++|++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~  236 (546)
T PRK08314        159 PPLQALAPGGVVAWKEALAAGLA--PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLA  236 (546)
T ss_pred             cccccccccccccHHHHhcccCC--CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEE
Confidence               00011223456666543221  2233457899999999999999999999999999998887777788899999999


Q ss_pred             cCChHHHHHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 005991          303 YLPLAHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAY  380 (666)
Q Consensus       303 ~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  380 (666)
                      .+|++|.+++.. ++.++..|+++++.+ .++..+++.++++++|++.++|.++..+.....                  
T Consensus       237 ~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~------------------  298 (546)
T PRK08314        237 VLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG------------------  298 (546)
T ss_pred             EcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC------------------
Confidence            999999999866 667899999999988 699999999999999999999999887754200                  


Q ss_pred             HHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCC
Q 005991          381 NSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN  460 (666)
Q Consensus       381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~  460 (666)
                                      .....        .+++|.+++||+++++++.+++.+.+++++++.||+||++..+........
T Consensus       299 ----------------~~~~~--------~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  354 (546)
T PRK08314        299 ----------------LAERD--------LSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRP  354 (546)
T ss_pred             ----------------ccccC--------chhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCCcCC
Confidence                            00000        137899999999999999999999899999999999999876665544445


Q ss_pred             CCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC---CCCeeecccEEEEecCCc
Q 005991          461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID---GDGWLHTGDIGLWLPGGR  537 (666)
Q Consensus       461 ~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~---~~gw~~TGDlg~~~~dG~  537 (666)
                      ..+++|.|+++++++|+|+++++.++.+.   .|||+|+|++++.||+++++.|++.|.   +++||+|||+|+++++|.
T Consensus       355 ~~~~~G~~~~g~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~  431 (546)
T PRK08314        355 KLQCLGIPTFGVDARVIDPETLEELPPGE---VGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGY  431 (546)
T ss_pred             CCCccCcccCCeEEEEEeCCCCcCCCCCC---ceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCc
Confidence            56789999999999999976777776665   899999999999999999999998873   346999999999999999


Q ss_pred             EEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh--------hHHHHHHHHcCCC
Q 005991          538 LKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP--------DVLKDWAASQGIK  606 (666)
Q Consensus       538 l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~--------~~l~~~~~~~~l~  606 (666)
                      +++.||+||+||+ +|++|+|.|||+++.++|+|.+++|++.++.   +.++|+|++++        ++++++++++ ++
T Consensus       432 l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~l~~~~~~~-l~  509 (546)
T PRK08314        432 FFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWAREH-MA  509 (546)
T ss_pred             EEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCCHHHHHHHHHHh-cc
Confidence            9999999999997 7999999999999999999999999997654   67899998643        6789999998 88


Q ss_pred             cccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          607 VIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       607 ~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                           .+++|+.+++++ +|++.+||++|++|++.
T Consensus       510 -----~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~  539 (546)
T PRK08314        510 -----AYKYPRIVEFVDSLPKSGSGKILWRQLQEQ  539 (546)
T ss_pred             -----cCCCCcEEEEecCCCCCCccceeHHHHHHH
Confidence                 999999999995 88888899999999765

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.6e-68  Score=591.69  Aligned_cols=500  Identities=25%  Similarity=0.372  Sum_probs=404.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ...|+.++|++.++.+|+++|++..   +      +.+||+||.++++++|++|.+ .|+++||+|+++++|+++|++++
T Consensus        22 ~~~~~~~~l~~~a~~~p~~~al~~~---~------~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~   92 (562)
T PRK05677         22 EYPNIQAVLKQSCQRFADKPAFSNL---G------KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAV   92 (562)
T ss_pred             ccCcHHHHHHHHHHhCCCCeeEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence            3468999999999999999999753   2      359999999999999999997 69999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCC--CC----------
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEH--LP----------  223 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~--~~----------  223 (666)
                      |||+++|++++|+++.++.+++.+++++++++++|++......+.+..... .++.++..+..+..  ..          
T Consensus        93 la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
T PRK05677         93 FGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT-GVKHVIVTEVADMLPPLKRLLINAVVKH  171 (562)
T ss_pred             HHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc-CcceeEEecccccccchhhhhcccchhh
Confidence            999999999999999999999999999999999999877665554443322 34444443211100  00          


Q ss_pred             --CCCCCC-CcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccc--cC-CC
Q 005991          224 --SLPSTS-GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ--FY-PS  297 (666)
Q Consensus       224 --~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~--~~-~~  297 (666)
                        ...... ......+.+.+..+...........++++++|+|||||||.||||+++|+++...+......+.  +. ..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~  251 (562)
T PRK05677        172 VKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC  251 (562)
T ss_pred             ccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCc
Confidence              000000 0012345555444332222233456899999999999999999999999999877655443332  33 34


Q ss_pred             cEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHH
Q 005991          298 DIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREK  374 (666)
Q Consensus       298 d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  374 (666)
                      +++++.+|++|.+++.. .+..+..|++.++.+  .++..+++.|+++++|+++++|+++..+......           
T Consensus       252 ~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-----------  320 (562)
T PRK05677        252 EILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAF-----------  320 (562)
T ss_pred             cEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCccc-----------
Confidence            68899999999999875 556777888777665  5889999999999999999999999877652000           


Q ss_pred             HHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhc
Q 005991          375 LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISA  454 (666)
Q Consensus       375 l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  454 (666)
                                                     +....+++|.+++||+++++++.+.|++.+++++++.||+||++.+++.
T Consensus       321 -------------------------------~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~  369 (562)
T PRK05677        321 -------------------------------RKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSV  369 (562)
T ss_pred             -------------------------------ccCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceee
Confidence                                           0000137999999999999999999999889999999999999876665


Q ss_pred             cCCCCCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEec
Q 005991          455 IDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP  534 (666)
Q Consensus       455 ~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~  534 (666)
                      .......++++|+|+++++++|+| +++..++.|+   .|||+++|+.++.||+++|+.|++.|..+|||+|||+|++|+
T Consensus       370 ~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~  445 (562)
T PRK05677        370 NPSQAIQVGTIGIPVPSTLCKVID-DDGNELPLGE---VGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQE  445 (562)
T ss_pred             cCccCCCCCccCccCCCCEEEEEC-CCCCCCCCCC---CeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECC
Confidence            544445678899999999999999 5567777665   899999999999999999999999998899999999999999


Q ss_pred             CCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc------ChhHHHHHHHHcCC
Q 005991          535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV------DPDVLKDWAASQGI  605 (666)
Q Consensus       535 dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~~l  605 (666)
                      +|.++|.||++|+||+ +|++|+|.+||++|.+||+|.+++|++.+++   +.++++|++      +.++++++++++ +
T Consensus       446 ~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~-l  523 (562)
T PRK05677        446 DGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRAN-L  523 (562)
T ss_pred             CCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCCHHHHHHHHHHh-h
Confidence            9999999999999997 7999999999999999999999999997754   577888874      346899999998 8


Q ss_pred             CcccccccccCcchhHHH-HHHHHhhhhhhhhhcc
Q 005991          606 KVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFR  639 (666)
Q Consensus       606 ~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~  639 (666)
                      +     .|++|..+.+++ +|.+.+||++|++|+.
T Consensus       524 ~-----~~~~P~~i~~v~~iP~t~sGKi~r~~L~~  553 (562)
T PRK05677        524 T-----GYKVPKAVEFRDELPTTNVGKILRRELRD  553 (562)
T ss_pred             h-----hccCCcEEEEeccCCCCCcccccHHHHHH
Confidence            8     999999999995 8888889999999975

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.4e-68  Score=588.60  Aligned_cols=482  Identities=20%  Similarity=0.265  Sum_probs=402.4

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .++.++|.+.++++||++|+.+.   +      +.+||+||+++++++|++|.++|+++|++|+++++|+++|+++++||
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~  113 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA  113 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence            57999999999999999999753   2      25999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHH
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (666)
                      +++|++++|+++.++.+++.+++++++++++|++......+.+.....+....++..++...            ...++.
T Consensus       114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~  181 (537)
T PRK13382        114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDH------------DLTVEV  181 (537)
T ss_pred             HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcc------------cccHHH
Confidence            99999999999999999999999999999999998776666554444444444443322110            123444


Q ss_pred             HHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHH
Q 005991          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS  318 (666)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~  318 (666)
                      +......   ......+++.++++|||||||.||||+++|+++..........+.+..++++++.+|++|.+++...+.+
T Consensus       182 ~~~~~~~---~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~  258 (537)
T PRK13382        182 LIAAHAG---QRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLA  258 (537)
T ss_pred             HhhccCc---CCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHH
Confidence            4432211   1112356889999999999999999999999988877776666778889999999999999999878889


Q ss_pred             HHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhh
Q 005991          319 VYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW  397 (666)
Q Consensus       319 l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~  397 (666)
                      +..|+++++.. +++..+++.|+++++|++.++|+++..|.+......                                
T Consensus       259 l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------  306 (537)
T PRK13382        259 ASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVR--------------------------------  306 (537)
T ss_pred             HhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhc--------------------------------
Confidence            99999998876 799999999999999999999999998865211000                                


Q ss_pred             hHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-CCCCCCccCCccCcEEEE
Q 005991          398 DRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKL  476 (666)
Q Consensus       398 d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i  476 (666)
                              ......++|.+++||+++++++.+.|.+.++.++++.||+||++.+++..... ....+++|+|+++++++|
T Consensus       307 --------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i  378 (537)
T PRK13382        307 --------NRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRI  378 (537)
T ss_pred             --------ccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccccCcCcEEEE
Confidence                    00001379999999999999999999998999999999999998765543321 245679999999999999


Q ss_pred             EecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeee
Q 005991          477 VDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYV  556 (666)
Q Consensus       477 vd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v  556 (666)
                      +| ++++.++.+.   .|||+++|++++.||+  ++.|+. + .+|||+|||++++++||+++|+||+||+||+ +|++|
T Consensus       379 ~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~-~G~~v  449 (537)
T PRK13382        379 LD-QDFREVPTGE---VGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDVGYLDENGRLFVVGRDDEMIVS-GGENV  449 (537)
T ss_pred             EC-CCCCCCCCCC---eeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCceEEEeCCCcEEEeccccceeEE-CCEEE
Confidence            99 5666666655   8999999999999998  556654 3 4799999999999999999999999999996 89999


Q ss_pred             ccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHHH-HHH
Q 005991          557 APEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIH  626 (666)
Q Consensus       557 ~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~  626 (666)
                      +|.+||++|.+||+|.+|+|++.++.   +.++|+|+++      .++++++++++ ++     .+++|..+.+++ +|+
T Consensus       450 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~-l~-----~~~~P~~i~~v~~lP~  523 (537)
T PRK13382        450 YPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDN-LA-----NYKVPRDIVVLDELPR  523 (537)
T ss_pred             CHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHHHHHHHHHHh-cc-----CCCCCcEEEEeccCCC
Confidence            99999999999999999999997754   5688999864      36789999998 88     999999999995 888


Q ss_pred             HHhhhhhhhhhcc
Q 005991          627 NLCQLYSSKELFR  639 (666)
Q Consensus       627 ~~~gK~~r~~l~~  639 (666)
                      +.+||++|++|++
T Consensus       524 t~~gK~~r~~L~~  536 (537)
T PRK13382        524 GATGKILRRELQA  536 (537)
T ss_pred             CCCCCCcHHhhCC
Confidence            8889999999975

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.7e-68  Score=599.73  Aligned_cols=523  Identities=16%  Similarity=0.176  Sum_probs=409.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ..+..+++|+++++.+||++|+++.   +...+..+.+||+||.++++++|++|.++|+++||+|+++++|+++++++++
T Consensus        51 ~~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l  127 (629)
T PRK10524         51 RTNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAML  127 (629)
T ss_pred             EeeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4455688999999999999999875   3222345789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEcccc---------HHHHHHhhhcC-CCceEEEEeCCCCCCCCCCC
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFISEI-PSVHLIVVVGGKDEHLPSLP  226 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~-~~l~~ii~~~~~~~~~~~~~  226 (666)
                      ||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.+..... +....++.++...... .. 
T Consensus       128 A~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~-  205 (629)
T PRK10524        128 ACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM-AR-  205 (629)
T ss_pred             HHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-Cc-
Confidence            999999999999999999999999999999999997532         23333333322 2344555554321110 00 


Q ss_pred             CCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHh-hcccccccCCCcEEEEcCC
Q 005991          227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSYLP  305 (666)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~p  305 (666)
                        .......|.++.........+.....++++++|+|||||||.||||+++|++++.... .....+++.++|++++.+|
T Consensus       206 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  283 (629)
T PRK10524        206 --VAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASD  283 (629)
T ss_pred             --ccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCC
Confidence              0011235666544322211222234678999999999999999999999999754433 3344567889999999999


Q ss_pred             hHHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 005991          306 LAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA  379 (666)
Q Consensus       306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~  379 (666)
                      +.|..+... ++.+++.|+++++++     .++..+++.++++++|++.++|+++..|.+......              
T Consensus       284 ~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------  349 (629)
T PRK10524        284 IGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALL--------------  349 (629)
T ss_pred             CCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccc--------------
Confidence            999888654 678899999999876     368899999999999999999999987754210000              


Q ss_pred             HHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCC--
Q 005991          380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK--  457 (666)
Q Consensus       380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~--  457 (666)
                                                +....+++|.+++||+++++++.+++.+.+++++++.||+||++..+.....  
T Consensus       350 --------------------------~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~  403 (629)
T PRK10524        350 --------------------------RKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGV  403 (629)
T ss_pred             --------------------------cccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCc
Confidence                                      0000148999999999999999999999899999999999999853332222  


Q ss_pred             --CCCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCC---CcCccccCChhhhhhcc---CCCCeeecccE
Q 005991          458 --GDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGP---IVFQGYYKNEVQTREVI---DGDGWLHTGDI  529 (666)
Q Consensus       458 --~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~---~v~~GY~~~~~~t~~~~---~~~gw~~TGDl  529 (666)
                        .....+++|+|++|++++|+|.+++..++.+.   .|||+|+||   +++.|||++++.+.+.+   ..+|||+|||+
T Consensus       404 ~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~---~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl  480 (629)
T PRK10524        404 EDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNE---KGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDW  480 (629)
T ss_pred             ccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCC---cEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCc
Confidence              12456789999999999999954777666654   899999998   68899999998877654   24689999999


Q ss_pred             EEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh-------------
Q 005991          530 GLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP-------------  593 (666)
Q Consensus       530 g~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------------  593 (666)
                      |++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++++|++.+             
T Consensus       481 ~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~  559 (629)
T PRK10524        481 GIRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLAL  559 (629)
T ss_pred             EEEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHH
Confidence            999999999999999999997 7999999999999999999999999998765   57889998642             


Q ss_pred             -hHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccchhhhhcCCCccceehh
Q 005991          594 -DVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSRCCYRTGRDSSVFCQE  656 (666)
Q Consensus       594 -~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~~~~~~~~~~~~~~~~  656 (666)
                       ++++++++++ ++     .+++|..|.+++ +|++.+||++|+.|++...-.-.+..+++--++
T Consensus       560 ~~~i~~~~~~~-l~-----~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~~~~  618 (629)
T PRK10524        560 EKEIMALVDSQ-LG-----AVARPARVWFVSALPKTRSGKLLRRAIQAIAEGRDPGDLTTIEDPA  618 (629)
T ss_pred             HHHHHHHHHhh-cC-----CCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcCCCCCCcccccCHH
Confidence             4677888888 88     999999999995 888888999999998763322233444444333

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.9e-68  Score=599.95  Aligned_cols=507  Identities=20%  Similarity=0.236  Sum_probs=397.4

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      +...|+.++|++.++++||++|+.+....+...+.++.+||+||.++++++|++|.+. +++||+|+++++|+++|++++
T Consensus        18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~   96 (631)
T PRK07769         18 PPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAF   96 (631)
T ss_pred             cccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHH
Confidence            3457899999999999999999986411111123457899999999999999999987 899999999999999999999


Q ss_pred             HHHHhcCCeEEec-CCCCC--HHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCC--ceEEEEeCCCCCCCCCCCCCCC
Q 005991          156 HACSAYSYISVPL-YDTLG--PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPS--VHLIVVVGGKDEHLPSLPSTSG  230 (666)
Q Consensus       156 lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--l~~ii~~~~~~~~~~~~~~~~~  230 (666)
                      |||+++|++++|+ ++..+  .+++.+++++++++++|++....+.+.+.....+.  ...++.++.....         
T Consensus        97 lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  167 (631)
T PRK07769         97 FGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPDE---------  167 (631)
T ss_pred             HHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccccccc---------
Confidence            9999999999999 45554  68899999999999999998766655544333321  1223333221000         


Q ss_pred             cEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHH
Q 005991          231 VKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY  310 (666)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  310 (666)
                               .  . . ........++++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|++
T Consensus       168 ---------~--~-~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~  234 (631)
T PRK07769        168 ---------V--G-A-TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDM  234 (631)
T ss_pred             ---------c--c-c-ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCch
Confidence                     0  0 0 0111234679999999999999999999999999998887777778888999999999999999


Q ss_pred             HHHHHHHHHHhCcEEEEec---C--CHHHHHHHHHhhcC---eEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 005991          311 ERANQIVSVYYGVAVGFYQ---G--DNLKLMDDLAVLKP---TIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNS  382 (666)
Q Consensus       311 ~~~~~~~~l~~G~~~~~~~---~--~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~  382 (666)
                      ++...+.+++.|+++++++   +  ++..+++.++++++   +++..+|.++..+.....  ....              
T Consensus       235 gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~--~~~~--------------  298 (631)
T PRK07769        235 GLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG--LPKD--------------  298 (631)
T ss_pred             hhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhc--cchh--------------
Confidence            9988788888899998875   2  88899999998886   789999998876643100  0000              


Q ss_pred             HHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh---CC---ccccCcccchhhhhhhccC
Q 005991          383 KKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF---GC---QVMEGYGMTETSCIISAID  456 (666)
Q Consensus       383 k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~---~~---~v~~~YG~TE~~~~~~~~~  456 (666)
                             + .+  .+           ..+++|.+++||+++++++.+.|.+.+   |+   .++++||+||++..++...
T Consensus       299 -------~-~~--~~-----------~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~  357 (631)
T PRK07769        299 -------G-EP--PL-----------DLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTP  357 (631)
T ss_pred             -------c-cc--Cc-----------chhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccC
Confidence                   0 00  00           014899999999999999999999877   33   5999999999876555432


Q ss_pred             CCC---------------------------CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccC
Q 005991          457 KGD---------------------------NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYK  509 (666)
Q Consensus       457 ~~~---------------------------~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~  509 (666)
                      ...                           ....++|+|.++++++|+|.+++..++.++   .|||||+|++++.|||+
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge---~GEl~v~gp~v~~GY~~  434 (631)
T PRK07769        358 MDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQ---IGEIWLHGNNIGTGYWG  434 (631)
T ss_pred             CCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCC---EEEEEecCCCccccccC
Confidence            211                           012479999999999999976677666665   89999999999999999


Q ss_pred             ChhhhhhccC-----------------CCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhc-CcCc
Q 005991          510 NEVQTREVID-----------------GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAK-CKFV  571 (666)
Q Consensus       510 ~~~~t~~~~~-----------------~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~-~p~V  571 (666)
                      +++.|++.|.                 .+|||+|||+|+++ ||+|+|+||+||+||+ +|++|+|.|||++|.+ ||.|
T Consensus       435 ~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~~p~v  512 (631)
T PRK07769        435 KPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVII-DGRNHYPQDLEYTAQEATKAL  512 (631)
T ss_pred             ChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEE-CCeeeCHHHHHHHHHhccccc
Confidence            9999999884                 25899999999995 9999999999999997 8999999999999986 8999


Q ss_pred             ce--EEEEEeCC----------------------CCeEEEEEEcC-------hhHHHHHHHHcCCCcccccc-cc-cCcc
Q 005991          572 LQ--CFIYGDSF----------------------NSCLVAIVAVD-------PDVLKDWAASQGIKVIYCFS-FR-ANSH  618 (666)
Q Consensus       572 ~~--~~V~g~~~----------------------~~~~va~vv~~-------~~~l~~~~~~~~l~~~~~~~-~~-~p~~  618 (666)
                      .+  |+|++.++                      .+.++|+|++.       .+++.++++++ ++     . ++ .|+.
T Consensus       513 ~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~~-l~-----~~~~~~p~~  586 (631)
T PRK07769        513 RTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQPIADDIRAA-IA-----VRHGVTVRD  586 (631)
T ss_pred             cCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccccHHHHHHHHHHH-HH-----HHcCCCccE
Confidence            98  89998776                      24688888752       36788899988 65     4 56 4888


Q ss_pred             hhHHH---HHHHHhhhhhhhhhccchhhhhcCCCccceehh
Q 005991          619 VIFIA---LIHNLCQLYSSKELFRSRCCYRTGRDSSVFCQE  656 (666)
Q Consensus       619 i~~v~---~~~~~~gK~~r~~l~~~~~~~~~~~~~~~~~~~  656 (666)
                      +.+++   +|++.+||++|++|++   .|..++..+.|-|+
T Consensus       587 ~~~v~~~~lP~t~~GKi~r~~l~~---~~~~~~~~~~~~~~  624 (631)
T PRK07769        587 VLLVPAGSIPRTSSGKIARRACRA---AYLDGSLRSGYGQP  624 (631)
T ss_pred             EEEECCCccccCCCcHHHHHHHHH---HHHcCCCccccCCC
Confidence            88884   8999999999999975   45666666655544

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.7e-68  Score=598.99  Aligned_cols=515  Identities=20%  Similarity=0.282  Sum_probs=389.5

Q ss_pred             CccccCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCC
Q 005991           56 WNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGL  135 (666)
Q Consensus        56 ~~~~r~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv  135 (666)
                      ++.+|+...+-.....+++.+...++.++|+++++++||++|+.+.   +...+.++.+||+||.++++++|++|.+.|+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv  102 (624)
T PRK12582         26 ISVERRADGSIVIKSRHPLGPYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGL  102 (624)
T ss_pred             eEEEEcCCceEEEecCCCCCCcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHHHHcCC
Confidence            4455554433333334666667889999999999999999999765   3212446789999999999999999999999


Q ss_pred             CCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCH-----HHHHHHHHhcCceEEEEcccc-HHHHHHhhhcCCCc
Q 005991          136 QKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP-----DAVKYVVNHAEIEAIFCIPQT-LNTLLSFISEIPSV  209 (666)
Q Consensus       136 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~l  209 (666)
                      ++||+|+++++|+++|+++++||+++|++++|+++.++.     +++.+++++++++++|++... .......... ..+
T Consensus       103 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~  181 (624)
T PRK12582        103 DPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL-LDV  181 (624)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh-cCc
Confidence            999999999999999999999999999999999999885     899999999999999998642 1222221111 123


Q ss_pred             eEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCCCC--CCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhh
Q 005991          210 HLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSP--QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAG  287 (666)
Q Consensus       210 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~  287 (666)
                      + ++.++....         .....++.++........  .......++++++|+|||||||.||||++||+++.+.+..
T Consensus       182 ~-~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~  251 (624)
T PRK12582        182 T-VVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAM  251 (624)
T ss_pred             e-EEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHH
Confidence            3 333332110         111245566554322110  0112346799999999999999999999999999887765


Q ss_pred             cccccccCC---CcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CC---HHHHHHHHHhhcCeEEeechHHHHHHH
Q 005991          288 FSLMVQFYP---SDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GD---NLKLMDDLAVLKPTIFPSVPRLYNRIY  358 (666)
Q Consensus       288 ~~~~~~~~~---~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~---~~~~~~~i~~~~~t~~~~~P~~~~~l~  358 (666)
                      .........   .+++++++|++|.+++.. ++.++..|+++++.+  ++   ...+++.++++++|+++++|+++..|.
T Consensus       252 ~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~  331 (624)
T PRK12582        252 QEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLA  331 (624)
T ss_pred             HHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHH
Confidence            544444433   589999999999999876 456889999998865  22   345678889999999999999998886


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh---
Q 005991          359 AGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF---  435 (666)
Q Consensus       359 ~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~---  435 (666)
                      +.+...    +                                  ..+....+++|.+++||+++++++.++|.+.+   
T Consensus       332 ~~~~~~----~----------------------------------~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~  373 (624)
T PRK12582        332 EAMEKD----D----------------------------------ALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRT  373 (624)
T ss_pred             HHHhhC----H----------------------------------HHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhh
Confidence            532110    0                                  00111124899999999999999999998753   


Q ss_pred             ---CCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChh
Q 005991          436 ---GCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEV  512 (666)
Q Consensus       436 ---~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~  512 (666)
                         +++++++||+||++.+++.........+++|+|+||++++|++        .|   +.|||+|+|++++.|||++|+
T Consensus       374 ~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~--------~G---~~GEl~vrg~~v~~GY~~~p~  442 (624)
T PRK12582        374 TGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP--------VG---DKYEVRVKGPNVTPGYHKDPE  442 (624)
T ss_pred             cCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc--------CC---CceEEEEECCcccccccCCcc
Confidence               3679999999999876553333445678999999999999974        23   379999999999999999999


Q ss_pred             hhhhccCCCCeeecccEEEE-e---cCCcEEEEccCCCeEEcCCeeeeccHHHH--HHHhcCcCcceEEEEEeCCCCeEE
Q 005991          513 QTREVIDGDGWLHTGDIGLW-L---PGGRLKIIDRKKNIFKLAQGEYVAPEKIE--NVYAKCKFVLQCFIYGDSFNSCLV  586 (666)
Q Consensus       513 ~t~~~~~~~gw~~TGDlg~~-~---~dG~l~i~GR~~d~ikl~~G~~v~p~eIE--~~l~~~p~V~~~~V~g~~~~~~~v  586 (666)
                      .|++.|+.||||+|||+|++ |   ++|+|+|+||+||+||+++|++|+|.+||  .++.+||.|.+|+|+|.+ ++.+.
T Consensus       443 ~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~-~~~~g  521 (624)
T PRK12582        443 LTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQD-RAFIG  521 (624)
T ss_pred             chhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCC-CCcEE
Confidence            99999988999999999998 4   56999999999999998889999998885  688999999999999986 66788


Q ss_pred             EEEEcChhH--------------------HHHHHHHcCCCcc--cccccc-cCcchhHHH-HHHHHhhhhhhh
Q 005991          587 AIVAVDPDV--------------------LKDWAASQGIKVI--YCFSFR-ANSHVIFIA-LIHNLCQLYSSK  635 (666)
Q Consensus       587 a~vv~~~~~--------------------l~~~~~~~~l~~~--~~~~~~-~p~~i~~v~-~~~~~~gK~~r~  635 (666)
                      ++|+|+.+.                    +.++++++ |...  ....+. .|+++.+++ .|.+.+||+..+
T Consensus       522 ~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~  593 (624)
T PRK12582        522 LLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREG-LSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDK  593 (624)
T ss_pred             EEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHH-HHHHHhhcCCChhheEEEEEeCCCCCccCCcCCcc
Confidence            888876543                    33444444 4310  112333 899888886 444445666544

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1.2e-67  Score=590.48  Aligned_cols=488  Identities=24%  Similarity=0.334  Sum_probs=394.3

Q ss_pred             HHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005991           81 LHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDHACS  159 (666)
Q Consensus        81 l~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA~~  159 (666)
                      +..+|.+  +.+|+++|+++.   ++    ...+||+||.++++++|++|.+ .|+++||+|+++++|+++|+++++||+
T Consensus        43 ~~~l~~~--~~~~~~~a~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~  113 (560)
T PLN02574         43 VSFIFSH--HNHNGDTALIDS---ST----GFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVL  113 (560)
T ss_pred             HHHHhcC--cccCCCCEEEEC---CC----CCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHH
Confidence            3455554  679999999753   21    1258999999999999999999 999999999999999999999999999


Q ss_pred             hcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHH
Q 005991          160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL  239 (666)
Q Consensus       160 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (666)
                      ++|++++|++|.++.+++.++++++++++++++.+....+...     ... ++.++......     ........|.++
T Consensus       114 ~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~-----~~~~~~~~~~~~  182 (560)
T PLN02574        114 SLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL-----GVP-VIGVPENYDFD-----SKRIEFPKFYEL  182 (560)
T ss_pred             HhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc-----CCc-EEecCcccccc-----cCccCcccHHHH
Confidence            9999999999999999999999999999999998765554331     111 22222110000     000112345555


Q ss_pred             HhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc----ccc-cCCCcEEEEcCChHHHHHHHH
Q 005991          240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL----MVQ-FYPSDIYMSYLPLAHIYERAN  314 (666)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~-~~~~d~~l~~~pl~h~~~~~~  314 (666)
                      ...... ..+.....++++++|+|||||||.||||++||+++.+.+..+..    ... ....+++++.+|++|.+++..
T Consensus       183 ~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~  261 (560)
T PLN02574        183 IKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSL  261 (560)
T ss_pred             hhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHH
Confidence            443322 11223346789999999999999999999999999887765432    122 235689999999999999876


Q ss_pred             -HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991          315 -QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (666)
Q Consensus       315 -~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (666)
                       ++.++..|+++++.+ +++..+++.++++++|++.++|+++..|.+.....                            
T Consensus       262 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------  313 (560)
T PLN02574        262 FVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV----------------------------  313 (560)
T ss_pred             HHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc----------------------------
Confidence             456778899998887 79999999999999999999999999886531100                            


Q ss_pred             CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCC--CCCCCCCccCCc
Q 005991          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDK--GDNLSGHVGSPN  469 (666)
Q Consensus       393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~  469 (666)
                                   .....+++|.+++||+++++++.+.+.+.+ ++.+++.||+||++.+++....  .....+++|.|.
T Consensus       314 -------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~  380 (560)
T PLN02574        314 -------------CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLA  380 (560)
T ss_pred             -------------ccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeC
Confidence                         000014899999999999999999998877 7899999999999865443222  124567899999


Q ss_pred             cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 005991          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (666)
Q Consensus       470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik  549 (666)
                      ++++++|+|+++++.++.++   .|||||+|++++.|||++++.|++.|+.+|||+|||+|++|+||+++|+||+||+||
T Consensus       381 ~~~~v~i~d~~~g~~~~~g~---~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~  457 (560)
T PLN02574        381 PNMQAKVVDWSTGCLLPPGN---CGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIK  457 (560)
T ss_pred             CCcEEEEEeCCCCcCCCCCC---CeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheE
Confidence            99999999977777776665   899999999999999999999999998899999999999999999999999999999


Q ss_pred             cCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchh
Q 005991          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVI  620 (666)
Q Consensus       550 l~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~  620 (666)
                      + +|++|+|.|||++|.+||+|.+++|++.++.   +.++++|+++      .+++.++++++ ++     .|+.|+.+.
T Consensus       458 ~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~-l~-----~~~~p~~v~  530 (560)
T PLN02574        458 Y-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQ-VA-----PYKKVRKVV  530 (560)
T ss_pred             E-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHHHHHHHHHHh-cc-----CcccCcEEE
Confidence            7 8999999999999999999999999997653   5688998863      47899999998 88     999999998


Q ss_pred             HHH-HHHHHhhhhhhhhhccc
Q 005991          621 FIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       621 ~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +++ +|++.+||++|++|++.
T Consensus       531 ~v~~iP~t~~GKi~r~~L~~~  551 (560)
T PLN02574        531 FVQSIPKSPAGKILRRELKRS  551 (560)
T ss_pred             EeeccCCCCcchhhHHHHHHH
Confidence            885 77888899999999865

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=5e-67  Score=583.18  Aligned_cols=492  Identities=25%  Similarity=0.364  Sum_probs=410.0

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ++..|+.+++.++++++|+++|+++.   +.    .+++||.||.++++++|++|.+.|+++||+|+++++|+++|++++
T Consensus        20 ~~~~~~~~~l~~~~~~~~~~~a~~~~---~~----~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~   92 (537)
T PLN02246         20 PNHLPLHDYCFERLSEFSDRPCLIDG---AT----GRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAF   92 (537)
T ss_pred             CCCCcHHHHHHHHHHhCCCCeEEEec---CC----CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHH
Confidence            45678999999999999999999753   21    246999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (666)
                      +||+++|++++|+++.++.+++..+++.++++++|++....+.+...... +.+ .++.++...           ....+
T Consensus        93 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~-~~i~~~~~~-----------~~~~~  159 (537)
T PLN02246         93 LGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DGV-TVVTIDDPP-----------EGCLH  159 (537)
T ss_pred             HHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CCc-eEEEeCCCC-----------CCcee
Confidence            99999999999999999999999999999999999998777666554321 222 344444321           01234


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc----ccccCCCcEEEEcCChHHHHH
Q 005991          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL----MVQFYPSDIYMSYLPLAHIYE  311 (666)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~  311 (666)
                      +.++...... ..+.....++++++++|||||||.||||+++|++++..+.....    .+++.++|++++.+|++|.++
T Consensus       160 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~  238 (537)
T PLN02246        160 FSELTQADEN-ELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYS  238 (537)
T ss_pred             HHHHhcCCCC-CCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHH
Confidence            5554432211 12233456899999999999999999999999999887665432    467889999999999999999


Q ss_pred             HHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005991          312 RAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (666)
Q Consensus       312 ~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (666)
                      +.. ++.++..|+++++.+ .++..+++.|+++++|++.++|+++..|.+.....                         
T Consensus       239 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-------------------------  293 (537)
T PLN02246        239 LNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVE-------------------------  293 (537)
T ss_pred             HHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCcccc-------------------------
Confidence            866 567899999999988 78999999999999999999999988775421000                         


Q ss_pred             CCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccC-----CCCCCCC
Q 005991          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAID-----KGDNLSG  463 (666)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~-----~~~~~~~  463 (666)
                                       ....+++|.+++||+++++++.+++++.+ ++.+++.||+||++.+++...     ......+
T Consensus       294 -----------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  356 (537)
T PLN02246        294 -----------------KYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSG  356 (537)
T ss_pred             -----------------ccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCC
Confidence                             00014799999999999999999999987 788999999999986554321     1123567


Q ss_pred             CccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 005991          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR  543 (666)
Q Consensus       464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR  543 (666)
                      ++|+|+++++++|+|++++..++.+.   .|||+++|++++.||+++++.|++.|+.+|||+|||+|+++++|++++.||
T Consensus       357 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR  433 (537)
T PLN02246        357 SCGTVVRNAELKIVDPETGASLPRNQ---PGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDR  433 (537)
T ss_pred             ccccccCCcEEEEecCCCCCcCCCCC---ceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEec
Confidence            89999999999999966677776665   899999999999999999999999998899999999999999999999999


Q ss_pred             CCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccc
Q 005991          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFR  614 (666)
Q Consensus       544 ~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~  614 (666)
                      .||+||+ +|++|+|.+||+.+.+||+|.+|+|++.++.   +.++++|+++      +++++++++++ ++     .|+
T Consensus       434 ~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l~-----~~~  506 (537)
T PLN02246        434 LKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQ-VV-----FYK  506 (537)
T ss_pred             ccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCCCHHHHHHHHHhh-Cc-----Ccc
Confidence            9999997 8999999999999999999999999987644   5788888864      46899999998 88     999


Q ss_pred             cCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          615 ANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       615 ~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      .|.++.+++ +|++.+||++|++|++.
T Consensus       507 ~p~~i~~~~~~P~t~~GKi~r~~L~~~  533 (537)
T PLN02246        507 RIHKVFFVDSIPKAPSGKILRKDLRAK  533 (537)
T ss_pred             ccceEEEeccCCCCCcchhhHHHHHHH
Confidence            999998885 88888899999998764

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=2.9e-67  Score=595.04  Aligned_cols=492  Identities=17%  Similarity=0.180  Sum_probs=388.0

Q ss_pred             hCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCC
Q 005991           91 NYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYD  170 (666)
Q Consensus        91 ~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~  170 (666)
                      +.++++|+++.   +. .+..+.+||+||.+++.++|++|.++|+++||+|+++++|++++++++|||+++|++++|+++
T Consensus        96 ~~~~~~a~~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~  171 (652)
T TIGR01217        96 AAGTEPALLYV---DE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSP  171 (652)
T ss_pred             cCCCCeEEEEE---CC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCC
Confidence            36789999875   32 244578999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcCceEEEEcccc---------HHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHh
Q 005991          171 TLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQS  241 (666)
Q Consensus       171 ~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (666)
                      .++++++.+++++++++++|+++..         .+.+.+....++.++.++.++...........  ......|+++..
T Consensus       172 ~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~  249 (652)
T TIGR01217       172 DFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPK--IDGALDLEDFTA  249 (652)
T ss_pred             CCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCccccccc--ccCcccHHHHHh
Confidence            9999999999999999999998643         35555555667777777766532211000000  001245777665


Q ss_pred             cCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHH-HHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHH
Q 005991          242 QGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS-NVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVY  320 (666)
Q Consensus       242 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~  320 (666)
                      .............++++++|+|||||||.||||++||++++. .+......+++.++|++++++|+.|+.. ..++.+|+
T Consensus       250 ~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~l~  328 (652)
T TIGR01217       250 AAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-NWLVSGLA  328 (652)
T ss_pred             cccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-HHHHHHHh
Confidence            422211222345679999999999999999999999998653 4444445578899999999999999864 33557899


Q ss_pred             hCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCCh
Q 005991          321 YGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (666)
Q Consensus       321 ~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (666)
                      .|+++++++     .++..+++.++++++|++..+|.++..+....                             ..+..
T Consensus       329 ~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~-----------------------------~~~~~  379 (652)
T TIGR01217       329 TGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAG-----------------------------VHPAR  379 (652)
T ss_pred             cCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcC-----------------------------CCccc
Confidence            999999986     26889999999999999988887766553210                             00000


Q ss_pred             hhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC--CccccCcccchhhhhhhcc-CCCCCCCCCccCCccCc
Q 005991          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG--CQVMEGYGMTETSCIISAI-DKGDNLSGHVGSPNPAC  472 (666)
Q Consensus       396 ~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~  472 (666)
                      .++           .++||.+++||+++++++.+++.+.++  ..+.+.||+||+++..... +......+++|.|.+|+
T Consensus       380 ~~~-----------l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~  448 (652)
T TIGR01217       380 THD-----------LSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGT  448 (652)
T ss_pred             cCC-----------hhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCC
Confidence            000           148999999999999999999988775  4567899999975433322 22224568899999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCccEEEEeCC--CcCccccCChhhhh--hc-cC-CCCeeecccEEEEecCCcEEEEccCCC
Q 005991          473 EIKLVDVPEMNYTSEDQPHPRGEICVRGP--IVFQGYYKNEVQTR--EV-ID-GDGWLHTGDIGLWLPGGRLKIIDRKKN  546 (666)
Q Consensus       473 ~v~ivd~~~~~~~~~~~~~~~GEl~v~g~--~v~~GY~~~~~~t~--~~-~~-~~gw~~TGDlg~~~~dG~l~i~GR~~d  546 (666)
                      +++|+| ++++.+ .+   +.|||+++||  +++.|||++++.|+  +. |. .+|||+|||+|++|+||+|+|+||+||
T Consensus       449 ~v~ivd-~~g~~~-~g---~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd  523 (652)
T TIGR01217       449 AVQSWD-PEGKPV-TG---EVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDS  523 (652)
T ss_pred             ceEEEC-CCCCCC-CC---CccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccC
Confidence            999999 555544 33   5899999996  68999999998765  22 32 378999999999999999999999999


Q ss_pred             eEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------hHHHHHHHHcCCCcccccccc
Q 005991          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------DVLKDWAASQGIKVIYCFSFR  614 (666)
Q Consensus       547 ~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~~l~~~~~~~~~  614 (666)
                      +||+ +|+||+|.|||++|.+||+|.+|+|+|.+++   +.++|+|++.+         ++++++++++ |+     .++
T Consensus       524 ~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~-l~-----~~~  596 (652)
T TIGR01217       524 TLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAG-LS-----PRH  596 (652)
T ss_pred             eEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhh-CC-----CCc
Confidence            9996 8999999999999999999999999998754   68999999742         3688889887 88     999


Q ss_pred             cCcchhHHH-HHHHHhhhhhhhhhccch
Q 005991          615 ANSHVIFIA-LIHNLCQLYSSKELFRSR  641 (666)
Q Consensus       615 ~p~~i~~v~-~~~~~~gK~~r~~l~~~~  641 (666)
                      +|+.|.+++ +|+|.+||++|+.|++.-
T Consensus       597 ~P~~i~~v~~lP~T~sGKi~r~~Lr~~~  624 (652)
T TIGR01217       597 VPDEIIEVPGIPHTLTGKRVEVAVKRVL  624 (652)
T ss_pred             CCCEEEECCCCCCCCCccChHHHHHHHH
Confidence            999999995 888999999999998763

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.3e-67  Score=596.14  Aligned_cols=499  Identities=17%  Similarity=0.195  Sum_probs=395.6

Q ss_pred             CHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005991           80 TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS  159 (666)
Q Consensus        80 tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~  159 (666)
                      |+.+.+.++  .+|+++|+++.   +. .++.+.+||+||.+++.++|++|.++|+++||+|+|+++|++++++++|||+
T Consensus        87 n~~~~~~~~--~~~~~~Al~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~  160 (655)
T PRK03584         87 NYAENLLRH--RRDDRPAIIFR---GE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATA  160 (655)
T ss_pred             eHHHHhhcc--CCCCCeEEEEE---CC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            444444332  58999999875   32 2446789999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEecCCCCCHHHHHHHHHhcCceEEEEcccc---------HHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCC
Q 005991          160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSG  230 (666)
Q Consensus       160 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~  230 (666)
                      ++|++++|+++.++.+++.+++++++++++|+++..         .+.+.+....++.++.++.++.......   ....
T Consensus       161 ~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~  237 (655)
T PRK03584        161 SLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAA---AAAL  237 (655)
T ss_pred             HcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCccc---cccc
Confidence            999999999999999999999999999999998643         2344444555666666666653221000   0011


Q ss_pred             cEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHH-HHhhcccccccCCCcEEEEcCChHHH
Q 005991          231 VKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS-NVAGFSLMVQFYPSDIYMSYLPLAHI  309 (666)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~pl~h~  309 (666)
                      .....|+++...............++++++|+|||||||.||||++||++++. .+......+++.++|+++++.++.|+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  317 (655)
T PRK03584        238 PGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWM  317 (655)
T ss_pred             CCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHH
Confidence            12345777665222222223345679999999999999999999999998754 34555556788999999999999987


Q ss_pred             HHHHHHHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005991          310 YERANQIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (666)
Q Consensus       310 ~~~~~~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (666)
                      ... ..+.+|+.|+++++++     .++..+++.++++++|++.++|+++..+.....                      
T Consensus       318 ~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~----------------------  374 (655)
T PRK03584        318 MWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL----------------------  374 (655)
T ss_pred             hHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC----------------------
Confidence            543 4567899999999975     378999999999999999999999987754200                      


Q ss_pred             HHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh--CCccccCcccchhhhhhhccC-CCCCC
Q 005991          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF--GCQVMEGYGMTETSCIISAID-KGDNL  461 (666)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~~~~-~~~~~  461 (666)
                             .+...++           .+++|.+++||+++++++.+++.+.+  ++.+.+.||+||+++...... .....
T Consensus       375 -------~~~~~~~-----------l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~  436 (655)
T PRK03584        375 -------VPGETHD-----------LSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVY  436 (655)
T ss_pred             -------CccccCC-----------hhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcC
Confidence                   0000000           14899999999999999999999887  478999999999865433222 22345


Q ss_pred             CCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCC--CcCccccCChhhhh--hc-c-CCCCeeecccEEEEecC
Q 005991          462 SGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGP--IVFQGYYKNEVQTR--EV-I-DGDGWLHTGDIGLWLPG  535 (666)
Q Consensus       462 ~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~--~v~~GY~~~~~~t~--~~-~-~~~gw~~TGDlg~~~~d  535 (666)
                      .+++|.|.+|++++|+| +++..+ .+   +.|||+|+|+  +++.|||++++.++  +. | ..+|||+|||+|++|+|
T Consensus       437 ~g~~g~p~~g~~~~ivd-~~g~~~-~g---~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~d  511 (655)
T PRK03584        437 RGEIQCRGLGMAVEAWD-EDGRPV-VG---EVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEH  511 (655)
T ss_pred             CCccCCCcCCceeEEEC-CCCCCC-CC---CceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCC
Confidence            68899999999999999 555554 34   4899999996  79999999998654  22 2 12689999999999999


Q ss_pred             CcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------hHHHHHHHHc
Q 005991          536 GRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------DVLKDWAASQ  603 (666)
Q Consensus       536 G~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~  603 (666)
                      |+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++   +.++|+|++.+         ++++++++++
T Consensus       512 G~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~  590 (655)
T PRK03584        512 GGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTN  590 (655)
T ss_pred             CeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhh
Confidence            999999999999997 8999999999999999999999999997753   68899998642         4688889988


Q ss_pred             CCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          604 GIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       604 ~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                       |+     .+++|..|++++ +|++.+||+.|++|++.
T Consensus       591 -L~-----~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~  622 (655)
T PRK03584        591 -LS-----PRHVPDKIIAVPDIPRTLSGKKVELPVKKL  622 (655)
T ss_pred             -CC-----CCcCCCEEEECCCCCCCCCccchHHHHHHH
Confidence             88     999999999995 88888999999999876

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.1e-67  Score=689.77  Aligned_cols=525  Identities=18%  Similarity=0.222  Sum_probs=432.9

Q ss_pred             hHHHhhHHHHhhccccCCcCCCccccCCCCccccccCCCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHH
Q 005991            4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD   83 (666)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~   83 (666)
                      ..++++|.++|++++++|+.+++++++..+...                   ..+...+...      ..+.+...++++
T Consensus      1524 ~~l~~~~~~lL~~l~~~p~~~~~~l~~~~~~~~-------------------~~~~~~~~~~------~~~~~~~~~~~~ 1578 (3956)
T PRK12467       1524 ERLAGHWLNLLQGLVADPERRLGELDLLDEAER-------------------RQILEGWNAT------HTGYPLARLVHQ 1578 (3956)
T ss_pred             HHHHHHHHHHHHHHhhCccCceeeccccchHHh-------------------hhhHHhhcCC------ccCCCccccHHH
Confidence            468899999999999999999999998765421                   0010001000      111233468999


Q ss_pred             HHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005991           84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (666)
Q Consensus        84 ~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~  163 (666)
                      +|+++++++||++|+.+.   +      +.+||+||+++++++|++|.+.|+++|++|+++++|++++++++|||+++|+
T Consensus      1579 ~~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~ 1649 (3956)
T PRK12467       1579 LIEDQAAATPEAVALVFG---E------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGG 1649 (3956)
T ss_pred             HHHHHHHhCCCCeEEEeC---C------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCc
Confidence            999999999999999764   3      3599999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcC
Q 005991          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQG  243 (666)
Q Consensus       164 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (666)
                      ++|||++.++.+++.++++++++++++++......+.    .....+ ++.++...                  +.... 
T Consensus      1650 ~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~----~~~~~~-~~~~~~~~------------------~~~~~- 1705 (3956)
T PRK12467       1650 AYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLP----LPDGLR-SLVLDQED------------------DWLEG- 1705 (3956)
T ss_pred             eeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCc----cccCCc-EEEecccc------------------chhcc-
Confidence            9999999999999999999999999999876543321    111122 22222211                  00000 


Q ss_pred             CCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCc
Q 005991          244 CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGV  323 (666)
Q Consensus       244 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~  323 (666)
                      .....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|+++++.|++|++++..++.+|..|+
T Consensus      1706 ~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~ 1785 (3956)
T PRK12467       1706 YSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELFWPLINGA 1785 (3956)
T ss_pred             CCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHHHHHHHHHhCCC
Confidence            01112223457899999999999999999999999999999988888889999999999999999999988999999999


Q ss_pred             EEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhH
Q 005991          324 AVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (666)
Q Consensus       324 ~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (666)
                      ++++.+    .++..+++.|+++++|++.++|+++..|..... ..                                  
T Consensus      1786 ~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~---------------------------------- 1830 (3956)
T PRK12467       1786 RLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QV---------------------------------- 1830 (3956)
T ss_pred             EEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-cc----------------------------------
Confidence            999976    478999999999999999999999998865200 00                                  


Q ss_pred             HhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCC-----CCCCCCccCCccCcE
Q 005991          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG-----DNLSGHVGSPNPACE  473 (666)
Q Consensus       400 ~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~~  473 (666)
                              ...+++|.+++||+++++++.+.|.+.+ ++.++|.||+||+++.++.....     .....++|+|++|++
T Consensus      1831 --------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~ 1902 (3956)
T PRK12467       1831 --------EHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLS 1902 (3956)
T ss_pred             --------ccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCE
Confidence                    0014799999999999999999888766 57899999999998766644322     123568999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC-------CCCeeecccEEEEecCCcEEEEccCCC
Q 005991          474 IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID-------GDGWLHTGDIGLWLPGGRLKIIDRKKN  546 (666)
Q Consensus       474 v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~-------~~gw~~TGDlg~~~~dG~l~i~GR~~d  546 (666)
                      ++|+| ++++.++.|.   .|||+|+|+++++||+++|+.|+++|.       +++||+|||+|++++||.|+|+||+||
T Consensus      1903 ~~vld-~~~~~vp~G~---~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~ 1978 (3956)
T PRK12467       1903 TYILD-ASLNPVPIGV---AGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDH 1978 (3956)
T ss_pred             EEEEC-CCCCCCCCCC---ceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCc
Confidence            99999 6677777665   899999999999999999999999983       346999999999999999999999999


Q ss_pred             eEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCC--CCeEEEEEEcCh--------------hHHHHHHHHcCCCcccc
Q 005991          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF--NSCLVAIVAVDP--------------DVLKDWAASQGIKVIYC  610 (666)
Q Consensus       547 ~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~--------------~~l~~~~~~~~l~~~~~  610 (666)
                      +||+ +|++|+|.|||++|.+||+|.+|+|++.+.  .+.++|+|++..              ++++++++++ |+    
T Consensus      1979 qVki-~G~rIel~eIE~~l~~~p~V~~a~vv~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~-Lp---- 2052 (3956)
T PRK12467       1979 QVKI-RGFRIELGEIEARLREQGGVREAVVIAQDGANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKAS-LP---- 2052 (3956)
T ss_pred             eEEe-CeEEechHHHHHHHHhCCCcceEEEEEecCCCCcEEEEEEEecCcccccccccccccHHHHHHHHHhh-Cc----
Confidence            9998 899999999999999999999999998753  468999998742              3688999988 88    


Q ss_pred             cccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          611 FSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       611 ~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                       .|++|..+++++ +|.+.+||++|++|.+.
T Consensus      2053 -~ymvP~~~~~l~~lP~t~~GKidr~~L~~~ 2082 (3956)
T PRK12467       2053 -EYMVPAHLVFLARMPLTPNGKLDRKALPAP 2082 (3956)
T ss_pred             -hhhCchhhhhhhcCCCCCCCCcchhhCCCC
Confidence             999999999996 88888899999999875

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=1.5e-66  Score=579.38  Aligned_cols=491  Identities=21%  Similarity=0.283  Sum_probs=404.6

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .++.++|.+.++.+|+++|+...   +...+..+.+||+||+++++++|.+|.+.|+++|++|+++++|+++|+++++||
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~   98 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC   98 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            58999999999999999999763   211223467999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH-----HHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEE
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL  233 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~  233 (666)
                      +++|++++|+++.++.+++.++++++++++++++....     ..+.+....++..+.++..+....             
T Consensus        99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  165 (538)
T TIGR03208        99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGD-------------  165 (538)
T ss_pred             HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCC-------------
Confidence            99999999999999999999999999999999987542     223333334555666666543210             


Q ss_pred             EehHHHHhcCCCCC-------CCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCCh
Q 005991          234 ISYLQLQSQGCSSP-------QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPL  306 (666)
Q Consensus       234 ~~~~~~~~~~~~~~-------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl  306 (666)
                      ..++.++.......       .......++++++|+|||||||.||||+++|+++...+......+++..+|++++++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  245 (538)
T TIGR03208       166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPM  245 (538)
T ss_pred             cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCc
Confidence            12333222111000       01123467999999999999999999999999999988877777888899999999999


Q ss_pred             HHHHHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005991          307 AHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (666)
Q Consensus       307 ~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (666)
                      +|.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|.++..+........                   
T Consensus       246 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~-------------------  306 (538)
T TIGR03208       246 AHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESG-------------------  306 (538)
T ss_pred             hhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC-------------------
Confidence            99998765 667899999998877 799999999999999999999999988765311000                   


Q ss_pred             HHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC--CCC
Q 005991          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD--NLS  462 (666)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--~~~  462 (666)
                                             ...+++|.+++||+++++++.+++.+.+|+++++.||+||++.+++......  ...
T Consensus       307 -----------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  363 (538)
T TIGR03208       307 -----------------------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKAS  363 (538)
T ss_pred             -----------------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccchhhcc
Confidence                                   0014799999999999999999998888999999999999987665443222  224


Q ss_pred             CCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 005991          463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID  542 (666)
Q Consensus       463 ~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G  542 (666)
                      .++|+|+++++++|+| +++..++.++   .|||+|+|++++.||+++|+.|+  ++.+|||+|||+|+++++|.|+++|
T Consensus       364 ~~~G~~~~g~~v~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~g  437 (538)
T TIGR03208       364 TTDGRPLPGVEVKVID-ANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRING  437 (538)
T ss_pred             CcccccCCCCEEEEEC-CCCCCCcCCC---CcEEEEecCcccccccCCccccc--ccCCCceeccceEEECCCCcEEEEe
Confidence            6799999999999999 5556565554   89999999999999999999875  3578999999999999999999999


Q ss_pred             cCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCccccccc
Q 005991          543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSF  613 (666)
Q Consensus       543 R~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~  613 (666)
                      |.||+||+ +|++|+|.+||+++.+||+|.+++|++.++.   +.++|+|++.      .+++.++++++.++     .+
T Consensus       438 R~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~-----~~  511 (538)
T TIGR03208       438 RSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVA-----LQ  511 (538)
T ss_pred             ccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCCHHHHHHHHHhcchh-----hc
Confidence            99999996 8999999999999999999999999997654   5788998863      46788999864477     89


Q ss_pred             ccCcchhHHH-HHHHHhhhhhhhhhcc
Q 005991          614 RANSHVIFIA-LIHNLCQLYSSKELFR  639 (666)
Q Consensus       614 ~~p~~i~~v~-~~~~~~gK~~r~~l~~  639 (666)
                      ++|+.+.+++ +|.+.+||++|++|++
T Consensus       512 ~~P~~i~~v~~iP~t~~gKv~r~~L~~  538 (538)
T TIGR03208       512 YIPERLEVVDALPATPAGKIQKFRLRE  538 (538)
T ss_pred             cCCcEEEEeccCCCCCccccchHhhcC
Confidence            9999999995 8888889999999863

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-67  Score=604.42  Aligned_cols=465  Identities=19%  Similarity=0.257  Sum_probs=385.9

Q ss_pred             CCHHHHHHHHHHh--CCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           79 GTLHDNFIYAVEN--YPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        79 ~tl~~~~~~~a~~--~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      .|+.++|.+++++  +||++|+...          ..+||+||+++++++|++|.+.|+++|++|+|+++|+++|+++++
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l   73 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL   73 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3788999998886  7999999642          149999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ||+++|++++|+++.++.+++.+++++++++++|++......+..       .. ++                     ..
T Consensus        74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-------~~-~~---------------------~~  124 (705)
T PRK06060         74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQP-------SR-VA---------------------EA  124 (705)
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcc-------cc-cc---------------------hh
Confidence            999999999999999999999999999999999998654332211       00 00                     00


Q ss_pred             HHHHhcCC-CCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcc-cccccCCCcEEEEcCChHHHHHHHH
Q 005991          237 LQLQSQGC-SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS-LMVQFYPSDIYMSYLPLAHIYERAN  314 (666)
Q Consensus       237 ~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~d~~l~~~pl~h~~~~~~  314 (666)
                      .++..... ..+....+..++++++++|||||||.||||+++|+++.+.+.++. ..+++.++|++++.+|++|.+++..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~  204 (705)
T PRK06060        125 AELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGN  204 (705)
T ss_pred             hhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhH
Confidence            11110000 001112234678999999999999999999999999988776553 3467889999999999999988754


Q ss_pred             -HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCC
Q 005991          315 -QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ  391 (666)
Q Consensus       315 -~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~  391 (666)
                       ++.++..|+++++.+  .++..+.+.++++++|+++++|+++..+.+....                            
T Consensus       205 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------------  256 (705)
T PRK06060        205 SVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP----------------------------  256 (705)
T ss_pred             HHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------------
Confidence             667899999999876  6888889999999999999999999887652100                            


Q ss_pred             CCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCCCCCCCccCCcc
Q 005991          392 TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNP  470 (666)
Q Consensus       392 ~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~  470 (666)
                                      ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||++.++..........+++|+|++
T Consensus       257 ----------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~  320 (705)
T PRK06060        257 ----------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLP  320 (705)
T ss_pred             ----------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccccCC
Confidence                            0003799999999999999999999888 58999999999998655443333445678999999


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEc
Q 005991          471 ACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL  550 (666)
Q Consensus       471 ~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl  550 (666)
                      +++++|+| ++++.++.+.   .|||||+|++++.|||++|+.+.   ..+|||+|||+|++++||+++|+||+||+||+
T Consensus       321 ~~~v~i~d-~~g~~~~~g~---~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~  393 (705)
T PRK06060        321 PYEIRVVA-PDGTTAGPGV---EGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVI  393 (705)
T ss_pred             CcEEEEEC-CCCCCCCCCC---ceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECCCceEEEecccCceEEE
Confidence            99999999 5556666554   89999999999999999998763   36899999999999999999999999999997


Q ss_pred             CCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------hHHHHHHHHcCCCcccccccccCcc
Q 005991          551 AQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------DVLKDWAASQGIKVIYCFSFRANSH  618 (666)
Q Consensus       551 ~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~~l~~~~~~~~~~p~~  618 (666)
                       +|++|+|.|||+++.+||+|.+|+|++.++.   +.++|+|++..         .+++++++++ |+     .|++|..
T Consensus       394 -~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~-L~-----~~~~P~~  466 (705)
T PRK06060        394 -GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNR-LS-----AFKVPHR  466 (705)
T ss_pred             -CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHh-CC-----CCcCCcE
Confidence             8999999999999999999999999987654   57899998642         3677888888 88     9999999


Q ss_pred             hhHHH-HHHHHhhhhhhhhhccc
Q 005991          619 VIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       619 i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      |.+++ +|++.+||++|++|++.
T Consensus       467 i~~v~~iP~t~~GKidr~~L~~~  489 (705)
T PRK06060        467 FAVVDRLPRTPNGKLVRGALRKQ  489 (705)
T ss_pred             EEEeecCCCCcchhhHHHHHHhh
Confidence            99995 88888899999999864

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=4.5e-67  Score=585.74  Aligned_cols=491  Identities=22%  Similarity=0.306  Sum_probs=385.2

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCc----cCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGT----VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~----~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  154 (666)
                      .|+.++|.+.++++||++|+++.   ++.    ...++++||+||.++++++|++|.+.|+++||+|+++++|+++|+++
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~   82 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFAL   82 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHH
Confidence            57889999999999999999864   321    12245799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccc--cHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcE
Q 005991          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ--TLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (666)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~  232 (666)
                      ++||+++|++++|+++.++.+++.+++++++++++|+++.  ....+...  ..+..+.++.++....          ..
T Consensus        83 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~----------~~  150 (552)
T PRK09274         83 TFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW--GKPSVRRLVTVGGRLL----------WG  150 (552)
T ss_pred             HHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc--Cccchhheeccccccc----------cC
Confidence            9999999999999999999999999999999999998752  12211111  1122333333322100          00


Q ss_pred             EEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHH
Q 005991          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER  312 (666)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  312 (666)
                      ..+++++...............++++++|+|||||||.||||++||+++.+.+......+++.++|+.++.+|++|.++ 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~-  229 (552)
T PRK09274        151 GTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFG-  229 (552)
T ss_pred             CccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhh-
Confidence            1234444322111122223456789999999999999999999999999998887777788999999999999988654 


Q ss_pred             HHHHHHHHhCcEEEEec--------CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005991          313 ANQIVSVYYGVAVGFYQ--------GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (666)
Q Consensus       313 ~~~~~~l~~G~~~~~~~--------~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (666)
                            +..|+++++.+        .++..+++.|+++++|+++++|+++..|.+......                   
T Consensus       230 ------~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------  284 (552)
T PRK09274        230 ------PALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG-------------------  284 (552)
T ss_pred             ------hhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC-------------------
Confidence                  34577777653        478999999999999999999999998876321100                   


Q ss_pred             HHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh--CCccccCcccchhhhhhhccCCC----
Q 005991          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF--GCQVMEGYGMTETSCIISAIDKG----  458 (666)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~~~~~~----  458 (666)
                                             ...+++|.+++||+++++++.+++++.+  |+++++.||+||++++++.....    
T Consensus       285 -----------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~  341 (552)
T PRK09274        285 -----------------------IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFA  341 (552)
T ss_pred             -----------------------CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhcc
Confidence                                   0014799999999999999999999988  57999999999998755433211    


Q ss_pred             ------CCCCCCccCCccCcEEEEEecCC--------CCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhcc--CCCC
Q 005991          459 ------DNLSGHVGSPNPACEIKLVDVPE--------MNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI--DGDG  522 (666)
Q Consensus       459 ------~~~~~~vG~p~~~~~v~ivd~~~--------~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~--~~~g  522 (666)
                            .....++|+|+|+++++|+|..+        +..++.+   +.|||+|+|+.++.|||++|+.|...|  +.+|
T Consensus       342 ~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g---~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g  418 (552)
T PRK09274        342 TRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATG---EIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQG  418 (552)
T ss_pred             ccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCC---CeeEEEEecCcccccccCChHHhhhhhcccCCC
Confidence                  11234799999999999999432        3334444   489999999999999999999999876  4466


Q ss_pred             --eeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC--CeEEEEEEcCh-----
Q 005991          523 --WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN--SCLVAIVAVDP-----  593 (666)
Q Consensus       523 --w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~~-----  593 (666)
                        ||+|||+|++|+||+|+|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++  +.++++|++.+     
T Consensus       419 ~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~~~~~~~  497 (552)
T PRK09274        419 DVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVELEPGVACS  497 (552)
T ss_pred             CcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEccCccccc
Confidence              9999999999999999999999999997 8999999999999999999999999987654  46888888643     


Q ss_pred             -hHHHHHHHHcCCCcccccccccCcchhHHH-HHHH--Hhhhhhhhhhccc
Q 005991          594 -DVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHN--LCQLYSSKELFRS  640 (666)
Q Consensus       594 -~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~--~~gK~~r~~l~~~  640 (666)
                       +++.+++++. +...  ..++.|+.+.+++ +|.+  .+||++|++|++.
T Consensus       498 ~~~l~~~l~~~-l~~~--~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~  545 (552)
T PRK09274        498 KSALYQELRAL-AAAH--PHTAGIERFLIHPSFPVDIRHNAKIFREKLAVW  545 (552)
T ss_pred             hHHHhhhhHHH-HHhc--CCCcceeEEeccCCCCccccccccccHHHHHHH
Confidence             3466666665 4411  2456778888886 7777  5799999999764

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.7e-67  Score=604.37  Aligned_cols=483  Identities=23%  Similarity=0.277  Sum_probs=387.2

Q ss_pred             CCCCHHHHHHHHHHhCCC-CceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPD-YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      +..|+.++|.++++++|+ ++|+...        +++++||+||.++++++|++|.+. +++||+|+++++|++||++++
T Consensus       202 ~~~t~~~~l~~~~~~~p~~~~a~~~~--------~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~  272 (718)
T PRK08043        202 PRETLYEALLSAQYRYGAGKPCIEDV--------NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI  272 (718)
T ss_pred             CCCCHHHHHHHHHHHhCCCCcceEcC--------CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence            457899999999999998 5777421        134699999999999999999987 599999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHH--HhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEE
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLL--SFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL  233 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~  233 (666)
                      |||+++|++++|+++.++++++.+++++++++++|++.+..+...  .....++.++.+ .+++....            
T Consensus       273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~------------  339 (718)
T PRK08043        273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWV-YLEDLKDD------------  339 (718)
T ss_pred             HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEE-Ehhhhhhh------------
Confidence            999999999999999999999999999999999999876543211  011112222222 22221000            


Q ss_pred             EehHHH----HhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHH
Q 005991          234 ISYLQL----QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI  309 (666)
Q Consensus       234 ~~~~~~----~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~  309 (666)
                      ..+.+.    ...... ........++|+++++|||||||.||||++||+++.+.+......++++++|++++.+|++|.
T Consensus       340 ~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~  418 (718)
T PRK08043        340 VTTADKLWIFAHLLMP-RLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHS  418 (718)
T ss_pred             cchhHHHHHHHHHhCC-ccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhh
Confidence            011110    000000 011123467999999999999999999999999999988877777788999999999999999


Q ss_pred             HHHHH-HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005991          310 YERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA  386 (666)
Q Consensus       310 ~~~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~  386 (666)
                      +++.. ++.++..|+++++.+  .+...+.+.++++++|++.++|+++..+.+..     .                   
T Consensus       419 ~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~-----~-------------------  474 (718)
T PRK08043        419 FGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA-----N-------------------  474 (718)
T ss_pred             hhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc-----C-------------------
Confidence            99876 668899999999876  46778889999999999999999887654310     0                   


Q ss_pred             HHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCcc
Q 005991          387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVG  466 (666)
Q Consensus       387 ~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG  466 (666)
                            +   ++           .+++|.+++||+++++++.+.|++.+|++++++||+||++..++...+.....+++|
T Consensus       475 ------~---~~-----------~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG  534 (718)
T PRK08043        475 ------P---YD-----------FARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVG  534 (718)
T ss_pred             ------c---cc-----------ccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcccCCCCCC
Confidence                  0   00           048999999999999999999999899999999999999876665544445678999


Q ss_pred             CCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccC--Chhh-------hhhccCCCCeeecccEEEEecCCc
Q 005991          467 SPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYK--NEVQ-------TREVIDGDGWLHTGDIGLWLPGGR  537 (666)
Q Consensus       467 ~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~--~~~~-------t~~~~~~~gw~~TGDlg~~~~dG~  537 (666)
                      +|+||++++|+|.++     .+   +.|||+++|++++.|||+  +++.       +.+.+..+|||+|||+|++|+||+
T Consensus       535 ~p~pg~~~~i~d~~~-----~~---~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  606 (718)
T PRK08043        535 RILPGMDARLLSVPG-----IE---QGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGF  606 (718)
T ss_pred             CcCCCCeeEEecCCC-----CC---CceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCc
Confidence            999999999998432     12   369999999999999998  4553       233334689999999999999999


Q ss_pred             EEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc---ChhHHHHHHHHcCCCccccc
Q 005991          538 LKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV---DPDVLKDWAASQGIKVIYCF  611 (666)
Q Consensus       538 l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~---~~~~l~~~~~~~~l~~~~~~  611 (666)
                      ++|+||+||+||+ +|++|+|.|||+++.+|+.+.+++|++.+++   +.++++++.   +.+++++++++++++     
T Consensus       607 l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~~~~~~~~l~~~~~~~~l~-----  680 (718)
T PRK08043        607 VQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTDSELTREKLQQYAREHGVP-----  680 (718)
T ss_pred             EEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcCcccCHHHHHHHHHhcCCC-----
Confidence            9999999999997 7999999999999999998888888886654   567777653   457899999987688     


Q ss_pred             ccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          612 SFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       612 ~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      .|++|+.+.+++ +|++.+||++|++|++.
T Consensus       681 ~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~  710 (718)
T PRK08043        681 ELAVPRDIRYLKQLPLLGSGKPDFVTLKSM  710 (718)
T ss_pred             cccCCceEEEecccCcCCCCCcCHHHHHHH
Confidence            999999999995 88888899999999764

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.6e-67  Score=645.27  Aligned_cols=522  Identities=17%  Similarity=0.185  Sum_probs=428.2

Q ss_pred             hHHHhhHHHHhhccccCCcCCCccccCCCCccccccCCCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHH
Q 005991            4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD   83 (666)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~   83 (666)
                      ..++++|..++++++.+|+.++++++|......  .   +   +.            .....      ..+. +..++.+
T Consensus       410 ~~l~~~~~~ll~~~~~~p~~~i~~~~~~~~~~~--~---~---~~------------~~~~~------~~~~-~~~~l~~  462 (1296)
T PRK10252        410 IAHAERLKALIAQFAADPALLCGDVDILLPGEY--A---Q---LA------------QVNAT------AVEI-PETTLSA  462 (1296)
T ss_pred             HHHHHHHHHHHHHHHhCCCCChhhcCCCCHHHH--H---H---HH------------HhcCC------CCCC-CcCCHHH
Confidence            457789999999999999999999987654411  0   0   00            00000      0011 2368999


Q ss_pred             HHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005991           84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (666)
Q Consensus        84 ~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~  163 (666)
                      +|.++++++||++|+.+.   +      +.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus       463 ~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~  533 (1296)
T PRK10252        463 LVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGA  533 (1296)
T ss_pred             HHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence            999999999999999764   3      3499999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcC
Q 005991          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQG  243 (666)
Q Consensus       164 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (666)
                      +++|+++.++.+++.++++++++++++++......+..    .+.+.. +                     .+.......
T Consensus       534 ~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~~-~---------------------~~~~~~~~~  587 (1296)
T PRK10252        534 AWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFAD----VPDLTS-L---------------------CYNAPLAPQ  587 (1296)
T ss_pred             EEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhccc----CCCcee-e---------------------ecccccccc
Confidence            99999999999999999999999999998765443321    111111 1                     111110000


Q ss_pred             CCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCc
Q 005991          244 CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGV  323 (666)
Q Consensus       244 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~  323 (666)
                      .  ..+.....++++++|+|||||||.||||+++|+++.+.+.+....+++.++|++++.+|++|+.++..++.+|+.|+
T Consensus       588 ~--~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~  665 (1296)
T PRK10252        588 G--AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGA  665 (1296)
T ss_pred             c--CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCC
Confidence            0  11122336789999999999999999999999999999998888899999999999999999999988999999999


Q ss_pred             EEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhH
Q 005991          324 AVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (666)
Q Consensus       324 ~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (666)
                      ++++.+    .++..+.+.++++++|++.++|+++..+.........                                 
T Consensus       666 ~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~---------------------------------  712 (1296)
T PRK10252        666 KLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA---------------------------------  712 (1296)
T ss_pred             EEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc---------------------------------
Confidence            999976    5899999999999999999999999887653111000                                 


Q ss_pred             HhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-------CCCCCCccCCccCc
Q 005991          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-------DNLSGHVGSPNPAC  472 (666)
Q Consensus       400 ~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-------~~~~~~vG~p~~~~  472 (666)
                             .....++|.+++||+++++++.+.|.+.++++++|.||+||++..++.....       .....++|+|++++
T Consensus       713 -------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~  785 (1296)
T PRK10252        713 -------RQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNT  785 (1296)
T ss_pred             -------cccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCC
Confidence                   0001479999999999999999999988899999999999998766654322       12346799999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCC------CCeeecccEEEEecCCcEEEEccCCC
Q 005991          473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG------DGWLHTGDIGLWLPGGRLKIIDRKKN  546 (666)
Q Consensus       473 ~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~------~gw~~TGDlg~~~~dG~l~i~GR~~d  546 (666)
                      +++|+| ++++.++.|.   .|||+|+|+++++||+++|+.|+++|..      ++||+|||+|++++||.|+|+||+||
T Consensus       786 ~~~i~d-~~~~~~~~g~---~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~  861 (1296)
T PRK10252        786 GLRILD-ARMRPVPPGV---AGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDD  861 (1296)
T ss_pred             EEEEEC-CCCCCCCCCC---ceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCC
Confidence            999999 6677777665   8999999999999999999999999843      45999999999999999999999999


Q ss_pred             eEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeC---------CCCeEEEEEEcC------hhHHHHHHHHcCCCccccc
Q 005991          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---------FNSCLVAIVAVD------PDVLKDWAASQGIKVIYCF  611 (666)
Q Consensus       547 ~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---------~~~~~va~vv~~------~~~l~~~~~~~~l~~~~~~  611 (666)
                      +||+ +|++|+|.|||++|.+||+|.+|+|++..         ....++|+|++.      .++++++++++ |+     
T Consensus       862 ~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~-Lp-----  934 (1296)
T PRK10252        862 QLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRER-LP-----  934 (1296)
T ss_pred             eEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCCHHHHHHHHHhh-Cc-----
Confidence            9998 89999999999999999999999876531         124799999863      47899999998 98     


Q ss_pred             ccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          612 SFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       612 ~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      .|++|..+++++ +|.+.+||++|++|++.
T Consensus       935 ~~~~P~~~~~~~~lP~t~~GKidr~~L~~~  964 (1296)
T PRK10252        935 PHMVPVVLLQLDQLPLSANGKLDRKALPLP  964 (1296)
T ss_pred             hhcCCcEEEEecCCCCCCCcChhHHhcCCC
Confidence            999999999885 88888899999999875

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=7.8e-68  Score=697.10  Aligned_cols=526  Identities=17%  Similarity=0.202  Sum_probs=434.9

Q ss_pred             hHHHhhHHHHhhccccCCcCCCccccCCCCccccccCCCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHH
Q 005991            4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD   83 (666)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~   83 (666)
                      ..+.++|.++|.+|+++|+.+++++++..+.....                   +...+..      ...+.+...++++
T Consensus      3670 ~~l~~~f~~~L~~l~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~------~~~~~~~~~~~~~ 3724 (4334)
T PRK05691       3670 ERLLGEFKRLLLALVQGFHGDLSELPLLGEQERDF-------------------LLDGCNR------SERDYPLEQSYVR 3724 (4334)
T ss_pred             HHHHHHHHHHHHHHHhCcCCChhhcCCCCHHHHHH-------------------HHHhhCC------ccCCCccccCHHH
Confidence            46889999999999999999999999776442100                   0000000      0011234569999


Q ss_pred             HHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005991           84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (666)
Q Consensus        84 ~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~  163 (666)
                      +|+++++++||++|+.+.   ++.      +||+||+++++++|+.|.++|+++|++|+|++++++++++++|||+++|+
T Consensus      3725 ~~~~~~~~~p~~~Av~~~---~~~------~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~ 3795 (4334)
T PRK05691       3725 LFEAQVAAHPQRIAASCL---DQQ------WSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGA 3795 (4334)
T ss_pred             HHHHHHHhCCCceEEEcC---CCc------ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCc
Confidence            999999999999999875   544      99999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCc--eEEEEeCCCCCCCCCCCCCCCcEEEehHHHHh
Q 005991          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV--HLIVVVGGKDEHLPSLPSTSGVKLISYLQLQS  241 (666)
Q Consensus       164 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (666)
                      ++|||++.+|.+++.++++++++++++++.............+...  ..++..+.                     ...
T Consensus      3796 a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 3854 (4334)
T PRK05691       3796 GYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE---------------------VQA 3854 (4334)
T ss_pred             EEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc---------------------ccc
Confidence            9999999999999999999999999999987655443333222211  11222111                     100


Q ss_pred             cCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHh
Q 005991          242 QGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYY  321 (666)
Q Consensus       242 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~  321 (666)
                      .......+.....|+++|||+|||||||.||||+++|+++.+.+.+....++++++|+++.+.|++|+.++..++.++..
T Consensus      3855 ~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~ 3934 (4334)
T PRK05691       3855 GEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAPLF 3934 (4334)
T ss_pred             ccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHHhC
Confidence            11111122234578999999999999999999999999999999888888999999999999999999999999999999


Q ss_pred             CcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhh
Q 005991          322 GVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW  397 (666)
Q Consensus       322 G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~  397 (666)
                      |+++++++    .++..+.+.++++++|++.++|+++..+......                                  
T Consensus      3935 G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~---------------------------------- 3980 (4334)
T PRK05691       3935 GARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ---------------------------------- 3980 (4334)
T ss_pred             CCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc----------------------------------
Confidence            99999886    4789999999999999999999999887642100                                  


Q ss_pred             hHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCC----CCCCCccCCccCc
Q 005991          398 DRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD----NLSGHVGSPNPAC  472 (666)
Q Consensus       398 d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~----~~~~~vG~p~~~~  472 (666)
                                 ..++||.+++||+++++++.+.|.+.+ +++++|.||+||++..++......    ....++|+|++|+
T Consensus      3981 -----------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~ 4049 (4334)
T PRK05691       3981 -----------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNN 4049 (4334)
T ss_pred             -----------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCC
Confidence                       004799999999999999999987764 789999999999998766443222    2335799999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC-------CCCeeecccEEEEecCCcEEEEccCC
Q 005991          473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID-------GDGWLHTGDIGLWLPGGRLKIIDRKK  545 (666)
Q Consensus       473 ~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~-------~~gw~~TGDlg~~~~dG~l~i~GR~~  545 (666)
                      +++|+| +.++.++.|.   .|||||+|+++++||+|+|+.|+++|.       +++||||||+|++++||.|+|+||+|
T Consensus      4050 ~~~v~d-~~~~~~p~g~---~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d 4125 (4334)
T PRK05691       4050 RLYLLD-EALELVPLGA---VGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRID 4125 (4334)
T ss_pred             EEEEEC-CCCCCCCCCC---ceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccC
Confidence            999999 6667777665   899999999999999999999999993       45799999999999999999999999


Q ss_pred             CeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeC--CCCeEEEEEEcCh---------hHHHHHHHHcCCCcccccccc
Q 005991          546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS--FNSCLVAIVAVDP---------DVLKDWAASQGIKVIYCFSFR  614 (666)
Q Consensus       546 d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~--~~~~~va~vv~~~---------~~l~~~~~~~~l~~~~~~~~~  614 (666)
                      ++||+ +|+||++.|||++|.++|+|.+|+|+...  ..+.++|+|++..         ++++++++++ ||     .||
T Consensus      4126 ~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~-Lp-----~ym 4198 (4334)
T PRK05691       4126 HQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVLAQGALLERIKQRLRAE-LP-----DYM 4198 (4334)
T ss_pred             CcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccccchHHHHHHHHHHHhh-CC-----hhh
Confidence            99998 89999999999999999999999887533  3468999999732         4678888888 98     999


Q ss_pred             cCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          615 ANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       615 ~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +|..+++++ +|.+.+||+||++|.+.
T Consensus      4199 vP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4199 VPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred             cCcceeecccCCCCCCCcccHhhcCCC
Confidence            999998885 89999999999999876

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=1.6e-66  Score=578.60  Aligned_cols=489  Identities=21%  Similarity=0.270  Sum_probs=406.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...++.++|.+.++++||++|+++.   +      +.+||+||.+++.++|.+|.+.|+++|++|+++++|+++|+++++
T Consensus        19 ~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~l   89 (542)
T PRK06155         19 SERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFL   89 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            4578999999999999999999754   3      349999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ||+++|++++|+++.++.+++.++++++++++++++.+....+.+.....+.++.++.++......    .....   ..
T Consensus        90 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~  162 (542)
T PRK06155         90 GCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVS----VPAGW---ST  162 (542)
T ss_pred             HHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccc----ccccc---ch
Confidence            999999999999999999999999999999999999887766655444333455566655432100    00000   00


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHH
Q 005991          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI  316 (666)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~  316 (666)
                      .++...  ..........++++++|+|||||||.||||+++|+++..........+++.+++++++.+|++|.+++...+
T Consensus       163 ~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~  240 (542)
T PRK06155        163 APLPPL--DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFF  240 (542)
T ss_pred             hhhccc--CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHH
Confidence            111111  111122234678999999999999999999999999988777667778889999999999999999998888


Q ss_pred             HHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCCh
Q 005991          317 VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (666)
Q Consensus       317 ~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (666)
                      .+++.|+++++.+ .++..+++.|+++++|++.++|+++..|.+.....                               
T Consensus       241 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~-------------------------------  289 (542)
T PRK06155        241 QALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARE-------------------------------  289 (542)
T ss_pred             HHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc-------------------------------
Confidence            9999999999887 78999999999999999999999988776521000                               


Q ss_pred             hhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEE
Q 005991          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIK  475 (666)
Q Consensus       396 ~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~  475 (666)
                                 ....+++|.++.||  +++++.+.+++.+++++++.||+||++..+.... .....+++|.|.++++++
T Consensus       290 -----------~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~  355 (542)
T PRK06155        290 -----------SDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-GSQRPGSMGRLAPGFEAR  355 (542)
T ss_pred             -----------ccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-CCCCCCCcCccCCCceEE
Confidence                       00014788887666  5788889999889999999999999987665432 345678899999999999


Q ss_pred             EEecCCCCCCCCCCCCCccEEEEeCC---CcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCC
Q 005991          476 LVDVPEMNYTSEDQPHPRGEICVRGP---IVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQ  552 (666)
Q Consensus       476 ivd~~~~~~~~~~~~~~~GEl~v~g~---~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~  552 (666)
                      |+| ++++.++.+.   .|||+++|+   +++.||+++++.|++.| .++||+|||+|++++||+++|+||.+|+||+ +
T Consensus       356 i~d-~~~~~~~~g~---~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~-~  429 (542)
T PRK06155        356 VVD-EHDQELPDGE---PGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRR-R  429 (542)
T ss_pred             EEC-CCCCCCCCCC---ceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcCCceEEEEecCCCEEEe-C
Confidence            999 5566666665   899999998   69999999999999998 7999999999999999999999999999996 8


Q ss_pred             eeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHHH
Q 005991          553 GEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA  623 (666)
Q Consensus       553 G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~  623 (666)
                      |++|+|.+||+++.+||+|.+|+|++.+++   +.++++++++      ..+++++++++ ++     .+++|..|.+++
T Consensus       430 G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-l~-----~~~~P~~i~~~~  503 (542)
T PRK06155        430 GENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPR-LA-----YFAVPRYVEFVA  503 (542)
T ss_pred             CEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHHHHHHHHhh-Cc-----CccCCcEEEEec
Confidence            999999999999999999999999987753   5677888753      46789999998 88     999999999885


Q ss_pred             -HHHHHhhhhhhhhhccc
Q 005991          624 -LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       624 -~~~~~~gK~~r~~l~~~  640 (666)
                       +|++.+||++|++|++.
T Consensus       504 ~iP~t~~GKi~r~~l~~~  521 (542)
T PRK06155        504 ALPKTENGKVQKFVLREQ  521 (542)
T ss_pred             cCCCCcccceeHHHHHhh
Confidence             88888899999999775

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-66  Score=579.31  Aligned_cols=496  Identities=21%  Similarity=0.285  Sum_probs=396.3

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991           75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (666)
Q Consensus        75 ~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  154 (666)
                      .+...|+.++|.+.++++||++|+.+.   ++    .+.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~---~~----~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~   84 (534)
T PRK05852         12 SDFGPRIADLVEVAATRLPEAPALVVT---AD----RIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVA   84 (534)
T ss_pred             hhhcccHHHHHHHHHHhCCCCcEEEec---CC----CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHH
Confidence            456789999999999999999999764   22    24599999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEE
Q 005991          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (666)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~  234 (666)
                      ++||+++|++++|+++.++.+++.++|++++++++|++...........  .......+.+..... ..     .+....
T Consensus        85 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~-----~~~~~~  156 (534)
T PRK05852         85 LLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPT--TRWWPLTVNVGGDSG-PS-----GGTLSV  156 (534)
T ss_pred             HHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhcccc--ccccceeeeeccccc-cc-----cccccc
Confidence            9999999999999999999999999999999999999764322111100  000111111111100 00     000000


Q ss_pred             ehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH
Q 005991          235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN  314 (666)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (666)
                      .+......  ..........++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|.+++..
T Consensus       157 ~~~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~  234 (534)
T PRK05852        157 HLDAATEP--TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIA  234 (534)
T ss_pred             ccccccCC--CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHH
Confidence            11110000  0001111223578899999999999999999999999998888777788899999999999999999877


Q ss_pred             -HHHHHHhCcEEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005991          315 -QIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (666)
Q Consensus       315 -~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (666)
                       ++.+++.|+++++..   +++..+++.++++++|+++++|.++..|........                         
T Consensus       235 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------  289 (534)
T PRK05852        235 ALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP-------------------------  289 (534)
T ss_pred             HHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc-------------------------
Confidence             567788899888754   688899999999999999999999988866321100                         


Q ss_pred             CCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-----C---CCC
Q 005991          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-----D---NLS  462 (666)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-----~---~~~  462 (666)
                                     .....+++|.+.+||+++++++.+.+.+.+++++++.||+||++..++.....     .   ...
T Consensus       290 ---------------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~  354 (534)
T PRK05852        290 ---------------SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVST  354 (534)
T ss_pred             ---------------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccccCccccc
Confidence                           00001489999999999999999999999999999999999998766643321     1   123


Q ss_pred             CCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 005991          463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID  542 (666)
Q Consensus       463 ~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G  542 (666)
                      +..|. .++++++|+| ++++.++.++   .|||+|+|+.++.|||++++.|++.| .+|||+|||+|++|+||++++.|
T Consensus       355 g~~g~-~~g~~~~i~d-~~g~~~~~g~---~Gel~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~g  428 (534)
T PRK05852        355 GLVGR-STGAQIRIVG-SDGLPLPAGA---VGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRG  428 (534)
T ss_pred             ccCCC-CCCCeEEEEC-CCCCCCCCCC---ceEEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEeCCCcEEEEe
Confidence            34444 7999999999 5566666655   89999999999999999999999998 68999999999999999999999


Q ss_pred             cCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc------ChhHHHHHHHHcCCCccccccc
Q 005991          543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV------DPDVLKDWAASQGIKVIYCFSF  613 (666)
Q Consensus       543 R~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~~l~~~~~~~~  613 (666)
                      |++|+||+ +|++|+|.+||+++.++|+|.+|+|+|.+++   +.++++|++      +.+++.++++++ ++     .+
T Consensus       429 R~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~~~~i~~~~~~~-l~-----~~  501 (534)
T PRK05852        429 RIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQFCRER-LA-----AF  501 (534)
T ss_pred             cchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCCHHHHHHHHHHh-cc-----cc
Confidence            99999996 8999999999999999999999999998764   568888886      347899999998 88     99


Q ss_pred             ccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          614 RANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       614 ~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++|+.+.+++ +|++.+||++|++|++.
T Consensus       502 ~~P~~i~~v~~iP~t~~GKi~r~~L~~~  529 (534)
T PRK05852        502 EIPASFQEASGLPHTAKGSLDRRAVAEQ  529 (534)
T ss_pred             cCCeEEEEhhhcCCCCCccccHHHHHHH
Confidence            9999999995 77888899999999864

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-67  Score=584.49  Aligned_cols=493  Identities=19%  Similarity=0.238  Sum_probs=384.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      -..++.+.|.+.++++|+++|+.+.   ++    .+.+||+||.++++++|++|.+.|+++|++|+++++|+++|+++++
T Consensus        12 ~~~~~~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~l   84 (540)
T PRK05857         12 LPSTVLDRVFEQARQQPEAIALRRC---DG----TSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVL   84 (540)
T ss_pred             CCcchHHHHHHHHhhCCCcEEEeec---CC----CceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHH
Confidence            4568999999999999999999754   33    2459999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ||+++|++++|+++.++.+++.++++.++++++|+++........+......+.. +..+.....  .         . +
T Consensus        85 A~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~---------~-~  151 (540)
T PRK05857         85 ACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPV-IAVDIAAVT--R---------E-S  151 (540)
T ss_pred             HHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccce-eEeeccccc--c---------c-c
Confidence            9999999999999999999999999999999999987653221111111122222 222211100  0         0 0


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcc----cccccCCCcEEEEcCChHHHHHH
Q 005991          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS----LMVQFYPSDIYMSYLPLAHIYER  312 (666)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~----~~~~~~~~d~~l~~~pl~h~~~~  312 (666)
                      ......  ..........++++++++|||||||.||||++||+++.+.+....    ..+....+++.++.+|++|.+++
T Consensus       152 ~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l  229 (540)
T PRK05857        152 EHSLDA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGL  229 (540)
T ss_pred             cccccc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchH
Confidence            000000  001112234678999999999999999999999999987654322    12355678899999999999999


Q ss_pred             HHHHHHHHhCcEEEEecCCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991          313 ANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (666)
Q Consensus       313 ~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (666)
                      ...+.+++.|+++++.+.++..+++.++++++|+++++|+++..|........                           
T Consensus       230 ~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~---------------------------  282 (540)
T PRK05857        230 WWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN---------------------------  282 (540)
T ss_pred             HHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC---------------------------
Confidence            88888999999988766889999999999999999999999988865311000                           


Q ss_pred             CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC-----CCCCCccC
Q 005991          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-----NLSGHVGS  467 (666)
Q Consensus       393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~  467 (666)
                                     ...+++|.+++||++++....+++ ..+|+++++.||+||++..........     ...+++|+
T Consensus       283 ---------------~~~~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~  346 (540)
T PRK05857        283 ---------------ATVPSLRLVGYGGSRAIAADVRFI-EATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGR  346 (540)
T ss_pred             ---------------CcCccceEEEEcCccCCchhHHHH-HHhCCeeecccCCCcCCceeeecccccccccccccCCcCc
Confidence                           001489999999999998887654 457999999999999975433222211     24578999


Q ss_pred             CccCcEEEEEecCCCCCCCCC--CCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCC
Q 005991          468 PNPACEIKLVDVPEMNYTSED--QPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK  545 (666)
Q Consensus       468 p~~~~~v~ivd~~~~~~~~~~--~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~  545 (666)
                      |++|++++|+|.++....+.+  ..++.|||+|+|++++.|||++++.|++.| .+|||+|||+|++|++|++++.||.|
T Consensus       347 ~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~  425 (540)
T PRK05857        347 PYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSS  425 (540)
T ss_pred             ccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccceEEEcCCceEEEecccc
Confidence            999999999994433233221  224589999999999999999999999999 68999999999999999999999999


Q ss_pred             CeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh-------hHHH----HHHHHcCCCccccc
Q 005991          546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP-------DVLK----DWAASQGIKVIYCF  611 (666)
Q Consensus       546 d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------~~l~----~~~~~~~l~~~~~~  611 (666)
                      |+||+ +|++|+|.|||++|..||+|.+|+|++.++.   +.++++|++.+       +++.    ++++++ ++     
T Consensus       426 ~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~-l~-----  498 (540)
T PRK05857        426 EMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRE-SE-----  498 (540)
T ss_pred             ccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhh-hc-----
Confidence            99996 8999999999999999999999999997754   45666666532       2333    344454 66     


Q ss_pred             ccccCcchhHHH-HHHHHhhhhhhhhhccchh
Q 005991          612 SFRANSHVIFIA-LIHNLCQLYSSKELFRSRC  642 (666)
Q Consensus       612 ~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~~  642 (666)
                      .+++|+.+.+++ +|++.+||++|++|++..+
T Consensus       499 ~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~  530 (540)
T PRK05857        499 PMARPSTIVIVTDIPRTQSGKVMRASLAAAAT  530 (540)
T ss_pred             cccCCeEEEEhhcCCCCCCcceeHHHHHHhhh
Confidence            899999999995 7888889999999987633

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.5e-66  Score=581.97  Aligned_cols=503  Identities=22%  Similarity=0.328  Sum_probs=413.5

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      .|+.++|+..+..+|+++|+.+.   +   .+.+.+||+||.+++.++|++|.+ .|+++||+|+++++|+++++++++|
T Consensus        10 ~~~~~~l~~~a~~~~~~~a~~~~---~---~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA   83 (576)
T PRK05620         10 LSLTRILEYGSTVHGDTTVTTWG---G---AEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFA   83 (576)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEc---C---CceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            58999999999999999998753   1   235779999999999999999986 7999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehH
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (666)
                      |+++|++++|+++.++.+++.++++.++++++|++....+.+.+....++..+.++..+................+.+|.
T Consensus        84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  163 (576)
T PRK05620         84 VACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYE  163 (576)
T ss_pred             HHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHH
Confidence            99999999999999999999999999999999999888777777777777777776665322111111111233456788


Q ss_pred             HHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhc--ccccccCCCcEEEEcCChHHHHHHHHH
Q 005991          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF--SLMVQFYPSDIYMSYLPLAHIYERANQ  315 (666)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~h~~~~~~~  315 (666)
                      ++.+.... ..+.....++++++++|||||||.||||+++|+++.......  ...+.+..+|++++.+|++|.+++...
T Consensus       164 ~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~  242 (576)
T PRK05620        164 ALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVP  242 (576)
T ss_pred             HHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHH
Confidence            88764322 222234567999999999999999999999999986554432  234677889999999999999999888


Q ss_pred             HHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005991          316 IVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (666)
Q Consensus       316 ~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (666)
                      +.++..|+++++..  .++..+++.++++++|+++++|+++..+........                           +
T Consensus       243 ~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------~  295 (576)
T PRK05620        243 LAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP---------------------------P  295 (576)
T ss_pred             HHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC---------------------------c
Confidence            88999999998875  689999999999999999999999988765311000                           0


Q ss_pred             ChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC--------CCCCCc
Q 005991          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD--------NLSGHV  465 (666)
Q Consensus       394 ~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--------~~~~~v  465 (666)
                          +           ..++|.+++||+++++++.+.|++.+|+++++.||+||++..++...+.+        ....++
T Consensus       296 ----~-----------~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (576)
T PRK05620        296 ----E-----------RMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQ  360 (576)
T ss_pred             ----c-----------cCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCcccccccccccccc
Confidence                0           03799999999999999999999889999999999999987655433221        123478


Q ss_pred             cCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhh----------------hhccCCCCeeecccE
Q 005991          466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQT----------------REVIDGDGWLHTGDI  529 (666)
Q Consensus       466 G~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t----------------~~~~~~~gw~~TGDl  529 (666)
                      |++.++++++++|.  +..... .++..|||+++|+.++.|||++++.|                .++|..+|||+|||+
T Consensus       361 G~~~~~~~~~i~~~--g~~~~~-~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~  437 (576)
T PRK05620        361 GRFPASLEYRIVND--GQVMES-TDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDV  437 (576)
T ss_pred             CCcCCceeEEEecC--CccccC-CCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCce
Confidence            99999999999983  333321 12247999999999999999999988                334556899999999


Q ss_pred             EEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC---------hhHHH
Q 005991          530 GLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD---------PDVLK  597 (666)
Q Consensus       530 g~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~---------~~~l~  597 (666)
                      |++++||.++|+||.||+||. +|++|+|.+||++|.+||.|.+|+|++.++.   +.+++++++.         .++++
T Consensus       438 ~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~  516 (576)
T PRK05620        438 GSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLR  516 (576)
T ss_pred             EEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHH
Confidence            999999999999999999995 8999999999999999999999999998764   4677777642         36799


Q ss_pred             HHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          598 DWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       598 ~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++++++ |+     .+++|+.|.+++ +|++.+||++|++|++.
T Consensus       517 ~~l~~~-L~-----~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~  554 (576)
T PRK05620        517 DQLRDR-LP-----NWMLPEYWTFVDEIDKTSVGKFDKKDLRQH  554 (576)
T ss_pred             HHHHhh-Cc-----cccCCeEEEEeccCCCCCcccCcHHHHHHH
Confidence            999998 98     999999999995 88888899999999876

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.3e-66  Score=575.35  Aligned_cols=494  Identities=25%  Similarity=0.412  Sum_probs=421.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ++.++.+.|.+.++.+|+++|+.+.   +      +.+||+||++++.++|..|.+.|+++||+|+++++|+++++++++
T Consensus         3 ~~~~i~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~l   73 (513)
T PRK07656          3 EWMTLPELLARAARRFGDKEAYVFG---D------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAAL   73 (513)
T ss_pred             ccccHHHHHHHHHHHCCCCeEEEeC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            4578999999999999999999763   2      359999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ||+++|++++|+++.++.+++..+++++++++++++.............++.++.++.........      ......+|
T Consensus        74 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  147 (513)
T PRK07656         74 GALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP------HTEKMKTF  147 (513)
T ss_pred             HHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCccccc------CccccccH
Confidence            999999999999999999999999999999999999887766666555666677776654432110      00123467


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH-H
Q 005991          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-Q  315 (666)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~  315 (666)
                      +++...... ..+.....++++++|+|||||||.||+|.++|+++.+.+......+++.++|++++.+|++|.+++.. +
T Consensus       148 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (513)
T PRK07656        148 TDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGV  226 (513)
T ss_pred             HHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHH
Confidence            777654332 12334467899999999999999999999999999988888777788999999999999999999876 6


Q ss_pred             HHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCC
Q 005991          316 IVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS  394 (666)
Q Consensus       316 ~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~  394 (666)
                      +.++..|+++++.+ .++..+++.++++++|++.++|+++..+.+.....                            . 
T Consensus       227 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------------------~-  277 (513)
T PRK07656        227 NAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRS----------------------------A-  277 (513)
T ss_pred             HHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcC----------------------------C-
Confidence            67899999998876 78999999999999999999999999887631100                            0 


Q ss_pred             hhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCC-ccccCcccchhhhhhhccCCCC-C--CCCCccCCcc
Q 005991          395 KMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGD-N--LSGHVGSPNP  470 (666)
Q Consensus       395 ~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~-~--~~~~vG~p~~  470 (666)
                                   ...+++|.+++||+++++++.+.+++.+++ .+++.||+||++++++.+.... .  ..+++|.|++
T Consensus       278 -------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~  344 (513)
T PRK07656        278 -------------EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIA  344 (513)
T ss_pred             -------------CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCC
Confidence                         001489999999999999999999998998 8999999999987776554433 2  2678999999


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEc
Q 005991          471 ACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL  550 (666)
Q Consensus       471 ~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl  550 (666)
                      +++++|+| +++..++.+.   .|||+++|+.++.||+++++.+...+..+|||+|||+|+++++|.++++||.||+||+
T Consensus       345 ~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~  420 (513)
T PRK07656        345 GVENKIVN-ELGEEVPVGE---VGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIV  420 (513)
T ss_pred             CcEEEEEC-CCCCCCCCCC---ceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEe
Confidence            99999999 5566666665   8999999999999999999999999977999999999999999999999999999997


Q ss_pred             CCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhH
Q 005991          551 AQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIF  621 (666)
Q Consensus       551 ~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~  621 (666)
                       +|++|+|.+||++|.++++|.+++|++.++.   +.++++|+++      ++++.++++++ ++     .+++|..+.+
T Consensus       421 -~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~-----~~~~p~~i~~  493 (513)
T PRK07656        421 -GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCREH-LA-----KYKVPRSIEF  493 (513)
T ss_pred             -CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHHHHHHHHHhh-cc-----cccCCCEEEE
Confidence             8999999999999999999999999987643   5678888864      46889999988 88     8999999999


Q ss_pred             HH-HHHHHhhhhhhhhhcc
Q 005991          622 IA-LIHNLCQLYSSKELFR  639 (666)
Q Consensus       622 v~-~~~~~~gK~~r~~l~~  639 (666)
                      ++ +|++.+||++|++|++
T Consensus       494 v~~iP~t~~gK~~r~~l~~  512 (513)
T PRK07656        494 LDELPKNATGKVLKRALRE  512 (513)
T ss_pred             ecCCCCCCccceeHHHHhc
Confidence            95 8888889999999875

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=2e-67  Score=697.71  Aligned_cols=523  Identities=17%  Similarity=0.198  Sum_probs=434.4

Q ss_pred             hHHHhhHHHHhhccccCCcCCCccccCCCCccccccCCCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHH
Q 005991            4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD   83 (666)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~   83 (666)
                      ..+.++|.++|.++.++|+.++++++|......                   ..+...+..      ...+.+...++++
T Consensus       461 ~~l~~~~~~lL~~i~~~p~~~i~~l~~~~~~~~-------------------~~~~~~~~~------~~~~~~~~~~~~~  515 (5163)
T PRK12316        461 ERMARHWQNLLRGMVENPQARVDELPMLDAEER-------------------GQLVEGWNA------TAAEYPLQRGVHR  515 (5163)
T ss_pred             HHHHHHHHHHHHHHHhccccccccCCCCCHHHH-------------------HHHHHHhcC------ccccCCCCCCHHH
Confidence            468899999999999999999999998765421                   000011100      0111233568999


Q ss_pred             HHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005991           84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (666)
Q Consensus        84 ~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~  163 (666)
                      +|.++++++||++|+.+.   +      +.+||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++||+++|+
T Consensus       516 ~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~  586 (5163)
T PRK12316        516 LFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGG  586 (5163)
T ss_pred             HHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCC
Confidence            999999999999999764   3      3599999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcC
Q 005991          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQG  243 (666)
Q Consensus       164 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (666)
                      ++||+++.++.+++.++++++++++++++......+.    ...... ++.++....                  .... 
T Consensus       587 ~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~----~~~~~~-~~~~~~~~~------------------~~~~-  642 (5163)
T PRK12316        587 AYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLP----LAAGVQ-VLDLDRPAA------------------WLEG-  642 (5163)
T ss_pred             EEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCC----cccCce-EEEecCcch------------------hhcc-
Confidence            9999999999999999999999999999876533221    111122 222221110                  0000 


Q ss_pred             CCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCc
Q 005991          244 CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGV  323 (666)
Q Consensus       244 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~  323 (666)
                      .....+.....++++++|+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++..++.+|+.|+
T Consensus       643 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~  722 (5163)
T PRK12316        643 YSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGA  722 (5163)
T ss_pred             CCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCCC
Confidence            01112223457899999999999999999999999999999998888899999999999999999999999999999999


Q ss_pred             EEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhH
Q 005991          324 AVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (666)
Q Consensus       324 ~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (666)
                      ++++.+    .++..+++.++++++|++.++|+++..|.+...                              +.     
T Consensus       723 ~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------------~~-----  767 (5163)
T PRK12316        723 RLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED------------------------------VA-----  767 (5163)
T ss_pred             EEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc------------------------------cc-----
Confidence            999975    689999999999999999999999998764200                              00     


Q ss_pred             HhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCC--CCCCCCCccCCccCcEEEE
Q 005991          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDK--GDNLSGHVGSPNPACEIKL  476 (666)
Q Consensus       400 ~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i  476 (666)
                               -.+++|.+++||+++++++.+.|.+.+ +++++|.||+||++..++....  ......++|+|++|++++|
T Consensus       768 ---------~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i  838 (5163)
T PRK12316        768 ---------SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYI  838 (5163)
T ss_pred             ---------cCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEE
Confidence                     014799999999999999999887655 7899999999999865543322  2244578999999999999


Q ss_pred             EecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC------CCCeeecccEEEEecCCcEEEEccCCCeEEc
Q 005991          477 VDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID------GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL  550 (666)
Q Consensus       477 vd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl  550 (666)
                      +| +++..++.|.   .|||+|+|+++++||+++|+.|+++|.      +++||+|||+|++++||.|+|+||+||+||+
T Consensus       839 ~d-~~~~~~p~G~---~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~  914 (5163)
T PRK12316        839 LD-ANLEPVPVGV---LGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKL  914 (5163)
T ss_pred             EC-CCCCCCCCCC---ceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEE
Confidence            99 5667676665   899999999999999999999999883      4569999999999999999999999999998


Q ss_pred             CCeeeeccHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcCh------hHHHHHHHHcCCCcccccccccCcchhHHH-
Q 005991          551 AQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDP------DVLKDWAASQGIKVIYCFSFRANSHVIFIA-  623 (666)
Q Consensus       551 ~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~------~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-  623 (666)
                       +|+||+|.|||++|.+||+|.+|+|++.+ .+.++|+|++.+      ++++++++++ |+     .|++|+.+++++ 
T Consensus       915 -~G~rI~~~EIE~~l~~~p~V~~a~V~~~~-~~~lva~vv~~~~~~~~~~~l~~~l~~~-Lp-----~y~vP~~i~~v~~  986 (5163)
T PRK12316        915 -RGLRIELGEIEARLLEHPWVREAAVLAVD-GKQLVGYVVLESEGGDWREALKAHLAAS-LP-----EYMVPAQWLALER  986 (5163)
T ss_pred             -ceEEcChHHHHHHHHhCCCcceEEEEEcC-CCeEEEEEEccCCCCCCHHHHHHHHHhh-CC-----CccCCCeEEEHhh
Confidence             89999999999999999999999999987 788999999753      6899999999 98     999999999995 


Q ss_pred             HHHHHhhhhhhhhhccc
Q 005991          624 LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       624 ~~~~~~gK~~r~~l~~~  640 (666)
                      +|.+.+||++|++|.+.
T Consensus       987 lP~t~~GKidr~~L~~~ 1003 (5163)
T PRK12316        987 LPLTPNGKLDRKALPAP 1003 (5163)
T ss_pred             CCCCCCCChhHHhhcCc
Confidence            88888899999999875

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=2.1e-65  Score=598.42  Aligned_cols=495  Identities=20%  Similarity=0.326  Sum_probs=412.2

Q ss_pred             cccccCCCCCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcC
Q 005991           67 TLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLI  146 (666)
Q Consensus        67 ~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~  146 (666)
                      .+...+++.+...|+.++|.+.++++|+++|+..+   . ..++++++||+|+.+++.++|++|.++|+++||+|+|+++
T Consensus       415 ~~~~~~~~~~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~  490 (1452)
T PTZ00297        415 NLPREYNPLAGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCE  490 (1452)
T ss_pred             hhhhcCCCcccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Confidence            34455777788899999999999999999999643   1 1244678999999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCC-CCCCC
Q 005991          147 NRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDE-HLPSL  225 (666)
Q Consensus       147 n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~-~~~~~  225 (666)
                      |++||+++++||+++|+++||+++  +.+++.+++++++++++|++.+....+.+...  +.++.+|++++... .....
T Consensus       491 N~~Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~~Lr~IIv~d~~~~~~~~~~  566 (1452)
T PTZ00297        491 ASRNIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS--RKLETVVYTHSFYDEDDHAV  566 (1452)
T ss_pred             CCHHHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--cCCcEEEEECCCcccccccc
Confidence            999999999999999999999986  46799999999999999999887777665533  36889999864211 10001


Q ss_pred             CCCCCcEEEehHHHHhcCCCCCC-CCCCCCCCCcEEEEe---ccCCCCCccEEEecHHHHHHHHhhccccc---ccCCCc
Q 005991          226 PSTSGVKLISYLQLQSQGCSSPQ-PFCPPKPEDIATICY---TSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSD  298 (666)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~---TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~d  298 (666)
                      ....++.+++|+++...+..... .....+++|++.|+|   ||||||.||||++||+|+++.+.......   ...++|
T Consensus       567 ~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D  646 (1452)
T PTZ00297        567 ARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKH  646 (1452)
T ss_pred             cccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCC
Confidence            11124567889999987743222 123347899999996   99999999999999999999988765422   356789


Q ss_pred             EEEEcCChHHHHHHHHHHHHHHhCcEEEEecCCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 005991          299 IYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTA  378 (666)
Q Consensus       299 ~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~  378 (666)
                      ++++++|++|++++...+.+++.|+++++  +++..++++|+++|||++++||++|+++.+.+...+...+.+++++|++
T Consensus       647 ~~Ls~LPLaHI~er~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~  724 (1452)
T PTZ00297        647 LMVHFTPFAMLFNRVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFER  724 (1452)
T ss_pred             EEEEechHHHHHHHHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            99999999999998778888999999976  5799999999999999999999999999999999888888999999999


Q ss_pred             HHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCC--CCcHHHHHHHHHHhCCccccCcccchhhhhhhccC
Q 005991          379 AYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGAS--PLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAID  456 (666)
Q Consensus       379 ~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~--~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~  456 (666)
                      ++..|......+..++.++++++|+++|+.+|+++|.+++||+  +++..+..      ++++..+||+||+.   +.+.
T Consensus       725 A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~  795 (1452)
T PTZ00297        725 AFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPS  795 (1452)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecC
Confidence            9998887777676667899999999999999999999999984  55544433      57788999999953   3344


Q ss_pred             CCCCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCC
Q 005991          457 KGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGG  536 (666)
Q Consensus       457 ~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG  536 (666)
                      +.+...  .|.|+|++|+||.+.++....     .+.|||+++       |++||+.|++.+  +||+         +||
T Consensus       796 ~~~~~~--~G~PlpgvEvKI~~~~E~~~~-----~~~GEIlvr-------~~kdpe~T~e~~--~gW~---------~dG  850 (1452)
T PTZ00297        796 EGVFCV--DGTPAPSLQVDLEPFDEPSDG-----AGIGQLVLA-------KKGEPRRTLPIA--AQWK---------RDR  850 (1452)
T ss_pred             CCCccc--CCeecCceEEEEcccccccCC-----CCCCeEEEE-------ECCChHHHHHhh--CcCc---------cCC
Confidence            444332  499999999999986665431     137999996       458999999854  5775         699


Q ss_pred             cEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChhHHH-HHHHHcCCC
Q 005991          537 RLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLK-DWAASQGIK  606 (666)
Q Consensus       537 ~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~-~~~~~~~l~  606 (666)
                      +|+|+||+||+||+++|+||+|+.||+.|.++|.|.+++|+|++. ..++|+|+|+.+.++ +|++++++.
T Consensus       851 ~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~-k~lvALVvpd~e~l~~~wa~~~gi~  920 (1452)
T PTZ00297        851 TLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPS-RPIIAIVSPNRDTVEFEWRQSHCMG  920 (1452)
T ss_pred             eEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCC-CceEEEEEeCHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999984 459999999999999 999988764

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.1e-66  Score=588.28  Aligned_cols=493  Identities=18%  Similarity=0.235  Sum_probs=384.1

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ++..|+.++|+++++++|+++|+.+....+...+.++.+||+||.++++++|++|.+. +++||+|+++++|+++|++++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~  109 (612)
T PRK12476         31 PPGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGF  109 (612)
T ss_pred             CccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHH
Confidence            3457899999999999999999987511011113356799999999999999999986 999999999999999999999


Q ss_pred             HHHHhcCCeEEec-CCCCC--HHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCC--ceEEEEeCCCCCCCCCCCCCCC
Q 005991          156 HACSAYSYISVPL-YDTLG--PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPS--VHLIVVVGGKDEHLPSLPSTSG  230 (666)
Q Consensus       156 lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--l~~ii~~~~~~~~~~~~~~~~~  230 (666)
                      +||+++|++++|+ ++.++  ++++.+++++++++++|++....+.+.+....++.  ...++.++....          
T Consensus       110 lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------  179 (612)
T PRK12476        110 FAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD----------  179 (612)
T ss_pred             HHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc----------
Confidence            9999999999999 57776  78999999999999999998776665554433332  123444332110          


Q ss_pred             cEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccc-cCCCcEEEEcCChHHH
Q 005991          231 VKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ-FYPSDIYMSYLPLAHI  309 (666)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~h~  309 (666)
                                 .. ..........++++++|+|||||||.||||++||+++.+.+......++ +.+++++++++|++|.
T Consensus       180 -----------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~  247 (612)
T PRK12476        180 -----------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHD  247 (612)
T ss_pred             -----------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccc
Confidence                       00 0011112346789999999999999999999999999887766555566 7889999999999999


Q ss_pred             HHHHHHHHHHHhCcEEEEec-----CCHHHHHHHHH--hhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 005991          310 YERANQIVSVYYGVAVGFYQ-----GDNLKLMDDLA--VLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNS  382 (666)
Q Consensus       310 ~~~~~~~~~l~~G~~~~~~~-----~~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~  382 (666)
                      +++...+.+++.|+++++..     .++..+++.++  ++++|+++.+|.++..+.......  ..              
T Consensus       248 ~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~--~~--------------  311 (612)
T PRK12476        248 MGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLP--AE--------------  311 (612)
T ss_pred             cchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcCh--hh--------------
Confidence            99987666656666666554     28889999995  589999999999988775420000  00              


Q ss_pred             HHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh---CC---ccccCcccchhhhhhhccC
Q 005991          383 KKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF---GC---QVMEGYGMTETSCIISAID  456 (666)
Q Consensus       383 k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~---~~---~v~~~YG~TE~~~~~~~~~  456 (666)
                                 ...++           .+++| +++||+++++++.+.|.+.+   |+   .+++.||+||++..++...
T Consensus       312 -----------~~~~~-----------l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~  368 (612)
T PRK12476        312 -----------GDDID-----------LSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIA  368 (612)
T ss_pred             -----------hcCcc-----------hhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccC
Confidence                       00000           03789 99999999999999999877   44   4899999999876544322


Q ss_pred             CCC---------------------------CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccC
Q 005991          457 KGD---------------------------NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYK  509 (666)
Q Consensus       457 ~~~---------------------------~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~  509 (666)
                      +..                           ...+++|+|++|++++|+|.++++.++.++   .||||++|++++.|||+
T Consensus       369 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~~  445 (612)
T PRK12476        369 PDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGE---VGEIWLHGDNIGRGYWG  445 (612)
T ss_pred             CCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCC---EEEEEEcCCcccccccC
Confidence            210                           123579999999999999955477776665   89999999999999999


Q ss_pred             ChhhhhhccC------------------CCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHh-cCcC
Q 005991          510 NEVQTREVID------------------GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYA-KCKF  570 (666)
Q Consensus       510 ~~~~t~~~~~------------------~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~-~~p~  570 (666)
                      +|+.|++.|.                  .++||+|||+|+++ ||+|+|+||+||+||+ +|++|+|.|||++|. .||.
T Consensus       446 ~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~-~G~~I~p~eIE~~l~~~~p~  523 (612)
T PRK12476        446 RPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVI-DGRNHYPQDIEATVAEASPM  523 (612)
T ss_pred             ChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEE-CCcccCHHHHHHHHHHhccc
Confidence            9999999884                  23599999999985 9999999999999997 899999999999997 5899


Q ss_pred             cce--EEEEEeCCC--CeEEEEEEc-------ChhHHHHHHHHcCCCccccccccc-CcchhHHH---HHHHHhhhhhhh
Q 005991          571 VLQ--CFIYGDSFN--SCLVAIVAV-------DPDVLKDWAASQGIKVIYCFSFRA-NSHVIFIA---LIHNLCQLYSSK  635 (666)
Q Consensus       571 V~~--~~V~g~~~~--~~~va~vv~-------~~~~l~~~~~~~~l~~~~~~~~~~-p~~i~~v~---~~~~~~gK~~r~  635 (666)
                      |.+  ++|++.+++  +.++++|++       +.+++.++++++ +.    ..+++ |+.+.+++   +|++.+||++|+
T Consensus       524 V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~-l~----~~~~~~p~~v~~v~~~~lP~t~~GKi~r~  598 (612)
T PRK12476        524 VRRGYVTAFTVPAEDNERLVIVAERAAGTSRADPAPAIDAIRAA-VS----RRHGLAVADVRLVPAGAIPRTTSGKLARR  598 (612)
T ss_pred             ccCCcEEEEEecCCCcceEEEEEEecCCcccccHHHHHHHHHHH-HH----HhhCCcceEEEEECCCCcCcCCchHHHHH
Confidence            999  677776653  678888885       335677888887 54    13666 57788885   899999999999


Q ss_pred             hhccc
Q 005991          636 ELFRS  640 (666)
Q Consensus       636 ~l~~~  640 (666)
                      +|++.
T Consensus       599 ~L~~~  603 (612)
T PRK12476        599 ACRAQ  603 (612)
T ss_pred             HHHHH
Confidence            99763

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=4.8e-66  Score=573.10  Aligned_cols=496  Identities=22%  Similarity=0.274  Sum_probs=406.3

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ..++|.++|++.++++||++|+.+.   +. .++++.+||.||.++++++|++|.++|+++||+|+++++|+.+|+++++
T Consensus         5 ~~~~l~~~~~~~a~~~p~~~a~~~~---~~-~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~l   80 (517)
T PRK08008          5 GGQHLRQMWDDLADVYGHKTALIFE---SS-GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWF   80 (517)
T ss_pred             ccccHHHHHHHHHHHCCCceEEEcc---cC-CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4478999999999999999999875   32 2445789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcC-CCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEI-PSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (666)
                      ||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+..... +.++.++..+......        ....+
T Consensus        81 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~  152 (517)
T PRK08008         81 GLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPAD--------DGVSS  152 (517)
T ss_pred             HHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCccc--------ccccC
Confidence            99999999999999999999999999999999999988777666655432 3455565554421110        11234


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH-
Q 005991          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-  314 (666)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-  314 (666)
                      +++.............+..++++++|+|||||||.||||++||+++............+..++++++.+|++|..+... 
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  232 (517)
T PRK08008        153 FTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTA  232 (517)
T ss_pred             HHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHH
Confidence            5554433222112223446789999999999999999999999999865433333345678999999999999877665 


Q ss_pred             HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005991          315 QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (666)
Q Consensus       315 ~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (666)
                      ++.++..|+++++.+ .++..+++.++++++|++.++|.++..+.......                             
T Consensus       233 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------  283 (517)
T PRK08008        233 AMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSA-----------------------------  283 (517)
T ss_pred             HHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcc-----------------------------
Confidence            567888999999987 78999999999999999999999988775420000                             


Q ss_pred             ChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-CCCCCCccCCccCc
Q 005991          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPAC  472 (666)
Q Consensus       394 ~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~  472 (666)
                      .             ....+++.+.+++ +++++....+.+.+++++++.||+||++..++...+. ....+++|.|++++
T Consensus       284 ~-------------~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~  349 (517)
T PRK08008        284 N-------------DRQHCLREVMFYL-NLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCY  349 (517)
T ss_pred             c-------------cccccceeeEEec-CCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCccccCCCCc
Confidence            0             0002577776654 7899999888888899999999999998655543332 24567899999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCccEEEEeC---CCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 005991          473 EIKLVDVPEMNYTSEDQPHPRGEICVRG---PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (666)
Q Consensus       473 ~v~ivd~~~~~~~~~~~~~~~GEl~v~g---~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik  549 (666)
                      +++|+| +++..++.+.   .|||+++|   ++++.|||++++.|++.|..+|||+|||+|++|+||.++++||.||+||
T Consensus       350 ~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~  425 (517)
T PRK08008        350 EAEIRD-DHNRPLPAGE---IGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIK  425 (517)
T ss_pred             EEEEEC-CCCCCCCCCC---cceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEE
Confidence            999999 5667676665   89999998   6899999999999999998899999999999999999999999999999


Q ss_pred             cCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchh
Q 005991          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVI  620 (666)
Q Consensus       550 l~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~  620 (666)
                      + +|++|+|.+||+++.+||.|.+|+|+|.++.   +.++++|+++      .+++.++++++ ++     .+++|..+.
T Consensus       426 ~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~-----~~~~P~~~~  498 (517)
T PRK08008        426 R-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQN-MA-----KFKVPSYLE  498 (517)
T ss_pred             e-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCCHHHHHHHHHhh-cc-----cccCCcEEE
Confidence            7 8999999999999999999999999998754   5788998864      36789999998 88     899999999


Q ss_pred             HHH-HHHHHhhhhhhhhhc
Q 005991          621 FIA-LIHNLCQLYSSKELF  638 (666)
Q Consensus       621 ~v~-~~~~~~gK~~r~~l~  638 (666)
                      +++ +|++.+||++|+.|+
T Consensus       499 ~v~~iP~t~~gK~~r~~l~  517 (517)
T PRK08008        499 IRKDLPRNCSGKIIKKNLK  517 (517)
T ss_pred             EeccCCCCCccceehhhcC
Confidence            885 778888999999875

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=5.7e-66  Score=573.30  Aligned_cols=488  Identities=21%  Similarity=0.280  Sum_probs=402.1

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...++.++|.++++++|+++|+++.   +      +.+||+||.++++++|.+|.+.|+++|++|+++++|+++|+++++
T Consensus        21 ~~~~l~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~l   91 (527)
T TIGR02275        21 QDKPLTDILRDQAARYPDAIAIICG---N------RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFF   91 (527)
T ss_pred             cCCcHHHHHHHHHHHCCCceEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence            3468999999999999999999753   2      359999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH-----HHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCc
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV  231 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~  231 (666)
                      ||+++|++++++++.++.+++.++++.+++++++++....     ..........+.++.++........          
T Consensus        92 a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  161 (527)
T TIGR02275        92 ALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVE----------  161 (527)
T ss_pred             HHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCc----------
Confidence            9999999999999999999999999999999999986532     1222222334555555554321000          


Q ss_pred             EEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHH
Q 005991          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYE  311 (666)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~  311 (666)
                        ..+...+..... ..+.....++++++|+|||||||.||||++||+++...+......+.++.+|++++.+|++|.++
T Consensus       162 --~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~  238 (527)
T TIGR02275       162 --AELFLWLESPAE-PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYP  238 (527)
T ss_pred             --chhhHHhhCcCc-cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhh
Confidence              011111111111 11223456799999999999999999999999999988887777788889999999999999999


Q ss_pred             HHH--HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005991          312 RAN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV  388 (666)
Q Consensus       312 ~~~--~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~  388 (666)
                      +..  .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+......                       
T Consensus       239 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-----------------------  295 (527)
T TIGR02275       239 LSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR-----------------------  295 (527)
T ss_pred             hhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-----------------------
Confidence            874  677899999998866 789999999999999999999999987765321100                       


Q ss_pred             cCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccC-CCCCCCCCccC
Q 005991          389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAID-KGDNLSGHVGS  467 (666)
Q Consensus       389 ~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~  467 (666)
                                         ....++|.+++||+++++++.+++.+.+|+++++.||+||++...+... ......+++|+
T Consensus       296 -------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  356 (527)
T TIGR02275       296 -------------------YDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGR  356 (527)
T ss_pred             -------------------CCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccccccCCC
Confidence                               0014899999999999999999999989999999999999754332221 12234568999


Q ss_pred             Cc-cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCC
Q 005991          468 PN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN  546 (666)
Q Consensus       468 p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d  546 (666)
                      |+ ++.+++|+| ++++..+.+.   .|||+++|+.++.|||++++.|++.|+.+|||+|||+|+++++|+++++||.||
T Consensus       357 ~~~~~~~v~i~d-~~g~~~~~g~---~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d  432 (527)
T TIGR02275       357 PMSPDDEVRVVD-DHGNPVAPGE---TGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKD  432 (527)
T ss_pred             CCCCCceEEEEC-CCCCCCCCCC---ceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccc
Confidence            99 589999999 5566666554   899999999999999999999999998999999999999999999999999999


Q ss_pred             eEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC-----hhHHHHHHHHcCCCcccccccccCcc
Q 005991          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD-----PDVLKDWAASQGIKVIYCFSFRANSH  618 (666)
Q Consensus       547 ~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~~~~~~~l~~~~~~~~~~p~~  618 (666)
                      +||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|+++     .++++++++++.++     .+++|..
T Consensus       433 ~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~l~~~~l~-----~~~~P~~  506 (527)
T TIGR02275       433 QINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPALKAAQLRRFLRERGLA-----EYKLPDR  506 (527)
T ss_pred             eeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCCCHHHHHHHHHhCCCc-----cccCCCE
Confidence            9996 8999999999999999999999999998765   5788888864     46889999986588     9999999


Q ss_pred             hhHHH-HHHHHhhhhhhhhhc
Q 005991          619 VIFIA-LIHNLCQLYSSKELF  638 (666)
Q Consensus       619 i~~v~-~~~~~~gK~~r~~l~  638 (666)
                      +.+++ +|.+.+||++|++|+
T Consensus       507 i~~v~~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       507 VEFIDSLPLTAVGKIDKKALR  527 (527)
T ss_pred             EEEeccCCCCCccceeHHhcC
Confidence            99985 777888999999875

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.1e-67  Score=694.75  Aligned_cols=516  Identities=17%  Similarity=0.222  Sum_probs=434.2

Q ss_pred             hHHHhhHHHHhhccccCCcCCCccccCCCCccccccCCCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHH
Q 005991            4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD   83 (666)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~   83 (666)
                      ..+.++|.++|++++++|+.+++++++..+....                   .+...+..      ...+.+...++++
T Consensus      3007 ~~l~~~f~~lL~~l~~~p~~~i~~l~~~~~~~~~-------------------~~~~~~~~------~~~~~~~~~~~~~ 3061 (5163)
T PRK12316       3007 ERLARHWQNLLRGMVENPQRSVDELAMLDAEERG-------------------QLLEAWNA------TAAEYPLERGVHR 3061 (5163)
T ss_pred             HHHHHHHHHHHHHHHhCCCCchhhccCCCHHHHH-------------------HHHHHhCC------CCcCCCCcCCHHH
Confidence            5688999999999999999999999987654210                   01111110      0112334578999


Q ss_pred             HHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005991           84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (666)
Q Consensus        84 ~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~  163 (666)
                      +|+++++++||++|+.+.   +      +.+||+||.++++++|++|.+.|+++|++|+|+++|+++|+++++||+++|+
T Consensus      3062 ~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~~~~V~l~~~~s~~~iv~~lail~aGa 3132 (5163)
T PRK12316       3062 LFEEQVERTPDAVALAFG---E------QRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGG 3132 (5163)
T ss_pred             HHHHHHHhCCCCeeEeeC---C------eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHHHHhCc
Confidence            999999999999999765   3      3599999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcC
Q 005991          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQG  243 (666)
Q Consensus       164 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (666)
                      ++|||++.++.+++.++++++++++++++...      ........ .++.++....                     . 
T Consensus      3133 ~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~------~~~~~~~~-~~~~~~~~~~---------------------~- 3183 (5163)
T PRK12316       3133 AYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL------RLPLAQGV-QVLDLDRGDE---------------------N- 3183 (5163)
T ss_pred             eeeecCCCCcHHHHHHHHHhcCCCEEEeCccc------cCCccCCc-cEEEeccccc---------------------c-
Confidence            99999999999999999999999999997654      11111112 2222222110                     0 


Q ss_pred             CCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCc
Q 005991          244 CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGV  323 (666)
Q Consensus       244 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~  323 (666)
                      .....+.....++++|||+|||||||.||||+++|+++.+.+.+....++++++|+++++.|++|+.+...++.+|+.|+
T Consensus      3184 ~~~~~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~i~~~L~~G~ 3263 (5163)
T PRK12316       3184 YAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGA 3263 (5163)
T ss_pred             ccccCCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCcccEEEeecCccHHHHHHHHHHHHhCCC
Confidence            00112223457899999999999999999999999999999998888899999999999999999999999999999999


Q ss_pred             EEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhH
Q 005991          324 AVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (666)
Q Consensus       324 ~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (666)
                      ++++.+    .++..+.+.+++.++|++..+|+++..+.....                                     
T Consensus      3264 ~l~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~~------------------------------------- 3306 (5163)
T PRK12316       3264 RVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEED------------------------------------- 3306 (5163)
T ss_pred             EEEEcChhhcCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhccc-------------------------------------
Confidence            999976    478899999999999999999999987764210                                     


Q ss_pred             HhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC--CCCCCCccCCccCcEEEEE
Q 005991          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--DNLSGHVGSPNPACEIKLV  477 (666)
Q Consensus       400 ~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~iv  477 (666)
                             ....+++|.+++|||++++++.++|.  .+++++|+||+||++++++.....  .....++|+|++|++++|+
T Consensus      3307 -------~~~~~~lr~~~~gGe~l~~~~~~~~~--~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~ 3377 (5163)
T PRK12316       3307 -------AHRCTSLKRIVCGGEALPADLQQQVF--AGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYIL 3377 (5163)
T ss_pred             -------cccCCcceEEEEccccCCHHHHHHHH--hCCcEeeccCCCccEeeEeEEeccCCCCCCCccceecCCCEEEEE
Confidence                   00114899999999999999999998  488999999999999877654432  2445789999999999999


Q ss_pred             ecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCC------CCeeecccEEEEecCCcEEEEccCCCeEEcC
Q 005991          478 DVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG------DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA  551 (666)
Q Consensus       478 d~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~------~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~  551 (666)
                      | ++++.++.|.   .|||||+|+++++||+|+|+.|+++|..      ++||+|||+|++++||.|+|+||+|++||+ 
T Consensus      3378 d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~qvKi- 3452 (5163)
T PRK12316       3378 D-GSLEPVPVGA---LGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKI- 3452 (5163)
T ss_pred             C-CCCCCCCCCC---CceEEecccccchhcCCChhhchhhCCCCCCCCCCeeEecCceEEECCCCCEEEecccCCeEee-
Confidence            9 6677777775   8999999999999999999999999943      479999999999999999999999999998 


Q ss_pred             CeeeeccHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcCh------hHHHHHHHHcCCCcccccccccCcchhHHH-H
Q 005991          552 QGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDP------DVLKDWAASQGIKVIYCFSFRANSHVIFIA-L  624 (666)
Q Consensus       552 ~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~------~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~  624 (666)
                      +|+||+|.|||++|.+||+|.+|+|++.. .++++|+|+++.      ++++++++++ |+     .||+|..+++++ +
T Consensus      3453 ~G~rIel~eIE~~l~~~~~V~~a~v~~~~-~~~l~a~vv~~~~~~~~~~~l~~~l~~~-Lp-----~ymvP~~~~~~~~l 3525 (5163)
T PRK12316       3453 RGFRIELGEIEARLLEHPWVREAVVLAVD-GRQLVAYVVPEDEAGDLREALKAHLKAS-LP-----EYMVPAHLLFLERM 3525 (5163)
T ss_pred             CcEeeChHHHHHHHHhCCCcceEEEEEcc-CCeEEEEEEcCCcCcccHHHHHHHHHhh-CC-----cccCcceeeeHhhc
Confidence            89999999999999999999999999987 678999999853      5789999998 98     999999999995 8


Q ss_pred             HHHHhhhhhhhhhccc
Q 005991          625 IHNLCQLYSSKELFRS  640 (666)
Q Consensus       625 ~~~~~gK~~r~~l~~~  640 (666)
                      |.+.+||+||++|.+.
T Consensus      3526 P~t~~GKvdr~~L~~~ 3541 (5163)
T PRK12316       3526 PLTPNGKLDRKALPRP 3541 (5163)
T ss_pred             CCCCCcchhHHhcCCC
Confidence            8888899999999875

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=6.1e-66  Score=577.92  Aligned_cols=496  Identities=20%  Similarity=0.258  Sum_probs=390.7

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .|+.++|.+.++++||++|+.+.   +      ..+||+||+++++++|++|.++|+++||+|+|+++|+++|++++|||
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~   84 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV   84 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            57899999999999999999763   2      35999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCc-----eEEEEeCCCCCCCCCCCCCCCcEE
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV-----HLIVVVGGKDEHLPSLPSTSGVKL  233 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l-----~~ii~~~~~~~~~~~~~~~~~~~~  233 (666)
                      +++|++++|+++.++.+++.++|+.++++++|++....+.+.+....++..     ..++.++.......     .....
T Consensus        85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  159 (579)
T PLN03102         85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKR-----PSSEE  159 (579)
T ss_pred             HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccC-----Ccccc
Confidence            999999999999999999999999999999999987766665554433211     12334433211100     01112


Q ss_pred             EehHHHHhcCCCCCCC----CCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHH
Q 005991          234 ISYLQLQSQGCSSPQP----FCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI  309 (666)
Q Consensus       234 ~~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~  309 (666)
                      .+++++...+......    .....++++++|+|||||||.||||+++|+++............+...+++++.+|++|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~  239 (579)
T PLN03102        160 LDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHC  239 (579)
T ss_pred             cCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhh
Confidence            3566655433221111    112457899999999999999999999999975544333333456677899999999999


Q ss_pred             HHHHHHHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005991          310 YERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV  388 (666)
Q Consensus       310 ~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~  388 (666)
                      +++...+.++..|+++++.+ +++..+++.|+++++|++.++|+++..|.+......                       
T Consensus       240 ~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------  296 (579)
T PLN03102        240 NGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL-----------------------  296 (579)
T ss_pred             cchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc-----------------------
Confidence            99888777888899888777 788999999999999999999999998875311000                       


Q ss_pred             cCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC---------
Q 005991          389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD---------  459 (666)
Q Consensus       389 ~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~---------  459 (666)
                              .           ...+++.+++||+++++.+.+++++ +|+++++.||+||+++.++......         
T Consensus       297 --------~-----------~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  356 (579)
T PLN03102        297 --------S-----------PRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQ  356 (579)
T ss_pred             --------C-----------CcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccccccccCCccc
Confidence                    0           0025778999999999999999876 6999999999999986443221100         


Q ss_pred             -----CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEec
Q 005991          460 -----NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP  534 (666)
Q Consensus       460 -----~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~  534 (666)
                           ...+..+.++++  ++++|.+.++.++.+ .+..|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+
T Consensus       357 ~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~-~~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~  432 (579)
T PLN03102        357 QMELKARQGVSILGLAD--VDVKNKETQESVPRD-GKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHP  432 (579)
T ss_pred             ccccccCCCcccccccc--eEEeccccccccCCC-CCCceEEEEECcchhhhhcCChhhhHhhh-ccCceecCceEEEcC
Confidence                 112333444444  455664444444332 12479999999999999999999999999 689999999999999


Q ss_pred             CCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC----------------hhH
Q 005991          535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD----------------PDV  595 (666)
Q Consensus       535 dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~----------------~~~  595 (666)
                      ||+|+|+||.||+||+ +|++|+|.|||+++.+||.|.+|+|++.++.   +.++|+|+++                ..+
T Consensus       433 dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  511 (579)
T PLN03102        433 DGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERD  511 (579)
T ss_pred             CCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccccccccccccHHH
Confidence            9999999999999996 8999999999999999999999999998764   5788998863                246


Q ss_pred             HHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccchh
Q 005991          596 LKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSRC  642 (666)
Q Consensus       596 l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~~  642 (666)
                      ++++++++ |+     .|++|..+.+++ +|.+.+||++|++|++...
T Consensus       512 l~~~~~~~-L~-----~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~  553 (579)
T PLN03102        512 LIEYCREN-LP-----HFMCPRKVVFLQELPKNGNGKILKPKLRDIAK  553 (579)
T ss_pred             HHHHHHhh-cc-----cccCCeEEEEcccCCCCCcccccHHHHHHHHH
Confidence            78899998 88     999999999985 8888889999999988743

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.9e-66  Score=569.66  Aligned_cols=476  Identities=23%  Similarity=0.326  Sum_probs=398.5

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      ..+.+.|.+.|+++||++|+.+.         .+.+||+||+++++++|++|++ .|+.+|++|+++++|+++|+++++|
T Consensus         2 ~~~~~~~~~~a~~~p~~~a~~~~---------~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la   72 (496)
T PRK06839          2 QGIAYWIEKRAYLHPDRIAIITE---------EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA   72 (496)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEC---------CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            46789999999999999999752         2469999999999999999985 7999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehH
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (666)
                      |+++|++++|+++.++.+++.++++.++++++++++.....+.+...... ...++.+.                  +++
T Consensus        73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~------------------~~~  133 (496)
T PRK06839         73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY-VQRVISIT------------------SLK  133 (496)
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccC-cceEEEec------------------chH
Confidence            99999999999999999999999999999999999876655544432221 22222222                  122


Q ss_pred             HHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH-HH
Q 005991          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QI  316 (666)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~  316 (666)
                      ++....   ........++++++|+|||||||.||+|+++|+++..........+++..+|++++.+|++|.+++.. .+
T Consensus       134 ~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~  210 (496)
T PRK06839        134 EIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAF  210 (496)
T ss_pred             hhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHH
Confidence            222211   11223456789999999999999999999999998776665555677889999999999999999876 46


Q ss_pred             HHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCCh
Q 005991          317 VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (666)
Q Consensus       317 ~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (666)
                      .++..|+++++.+ .++..+++.++++++|++.++|+++..+.......                               
T Consensus       211 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------  259 (496)
T PRK06839        211 PTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE-------------------------------  259 (496)
T ss_pred             HHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc-------------------------------
Confidence            7899999998876 79999999999999999999999999886531100                               


Q ss_pred             hhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC--CCCCCCccCCccCcE
Q 005991          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--DNLSGHVGSPNPACE  473 (666)
Q Consensus       396 ~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~  473 (666)
                                 .....++|.+++||+++++++.+.+++. |+++.+.||+||++..++.....  ....+++|+|+++++
T Consensus       260 -----------~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~  327 (496)
T PRK06839        260 -----------TTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCD  327 (496)
T ss_pred             -----------cCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCce
Confidence                       0001489999999999999999999886 99999999999998755433322  245688999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCe
Q 005991          474 IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG  553 (666)
Q Consensus       474 v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G  553 (666)
                      ++|+| +++..++.|+   .|||+|+|+.++.||+++++.++..+ .+|||+|||+|+++++|.+++.||.+|+||. +|
T Consensus       328 ~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G  401 (496)
T PRK06839        328 YELID-ENKNKVEVGE---VGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIIS-GG  401 (496)
T ss_pred             EEEEC-CCcCCCCCCC---ceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCCcEEEeccccceEEE-CC
Confidence            99999 4455566555   89999999999999999999999888 6899999999999999999999999999996 89


Q ss_pred             eeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHHH-
Q 005991          554 EYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-  623 (666)
Q Consensus       554 ~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-  623 (666)
                      ++|+|.+||+++.++|+|.+|+|++.++.   +.++++|+++      .++++++++++ ++     .+++|..+++++ 
T Consensus       402 ~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~-----~~~~P~~~~~v~~  475 (496)
T PRK06839        402 ENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLF-LA-----KYKIPKEIVFLKE  475 (496)
T ss_pred             EEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHhh-Cc-----CCCCCcEEEEecc
Confidence            99999999999999999999999997654   4788999864      36889999988 88     899999999995 


Q ss_pred             HHHHHhhhhhhhhhccc
Q 005991          624 LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       624 ~~~~~~gK~~r~~l~~~  640 (666)
                      +|.+.+||++|++|++.
T Consensus       476 ~P~t~~GKi~r~~l~~~  492 (496)
T PRK06839        476 LPKNATGKIQKAQLVNQ  492 (496)
T ss_pred             CCCCccccccHHHHHHH
Confidence            88888899999999864

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.7e-65  Score=575.44  Aligned_cols=499  Identities=26%  Similarity=0.344  Sum_probs=406.3

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .|+.++|+++++++||++|+.+.   +      +.+||+||.++++++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus        32 ~~l~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~  102 (573)
T PRK05605         32 TTLVDLYDNAVARFGDRPALDFF---G------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAV  102 (573)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            48999999999999999999764   2      24999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCC---------------
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLP---------------  223 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~---------------  223 (666)
                      +++|++++|+++.++.+++.+++++++++++|+++.....+.+..... .++.++.++.......               
T Consensus       103 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (573)
T PRK05605        103 LRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-PLETIVSVNMIAAMPLLQRLALRLPIPALRK  181 (573)
T ss_pred             HhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-ccceeEeeecccccccccccccccccccccc
Confidence            999999999999999999999999999999999887665554443322 2334444332110000               


Q ss_pred             --CCCCCCCcEEEehHHHHhcCCCC---CCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccc-c-CC
Q 005991          224 --SLPSTSGVKLISYLQLQSQGCSS---PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ-F-YP  296 (666)
Q Consensus       224 --~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~-~~  296 (666)
                        ...........+|.++.......   ........++++++++|||||||.||+|++||+++...+........ + ..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~  261 (573)
T PRK05605        182 ARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDG  261 (573)
T ss_pred             cccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCC
Confidence              00001112335677665442211   01222356789999999999999999999999999887764433222 2 34


Q ss_pred             CcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHH
Q 005991          297 SDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREK  374 (666)
Q Consensus       297 ~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  374 (666)
                      ++++++.+|++|.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|+++..|.+......         
T Consensus       262 ~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~---------  332 (573)
T PRK05605        262 PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG---------  332 (573)
T ss_pred             CcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC---------
Confidence            789999999999999876 456789999998877 799999999999999999999999998876321100         


Q ss_pred             HHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhc
Q 005991          375 LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISA  454 (666)
Q Consensus       375 l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  454 (666)
                                                       ...+++|.+++||+++++++.+++.+.+++++++.||+||++++++.
T Consensus       333 ---------------------------------~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  379 (573)
T PRK05605        333 ---------------------------------VDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVG  379 (573)
T ss_pred             ---------------------------------CCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhc
Confidence                                             00037999999999999999999998889999999999999987765


Q ss_pred             cCCCC-CCCCCccCCccCcEEEEEecCC-CCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEE
Q 005991          455 IDKGD-NLSGHVGSPNPACEIKLVDVPE-MNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLW  532 (666)
Q Consensus       455 ~~~~~-~~~~~vG~p~~~~~v~ivd~~~-~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~  532 (666)
                      ..... ...+++|.|+++++++|+|.++ +..++.+.   .|||+++|+.++.||+++++.|++.| .+|||+|||+|++
T Consensus       380 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~  455 (573)
T PRK05605        380 NPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGE---EGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVM  455 (573)
T ss_pred             CCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCC---eeEEEEecCchhhhhcCChhHhhhcc-cCCCcccCCEEEE
Confidence            54332 4567899999999999999655 35555554   89999999999999999999999998 5789999999999


Q ss_pred             ecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc------ChhHHHHHHHHc
Q 005991          533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV------DPDVLKDWAASQ  603 (666)
Q Consensus       533 ~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~  603 (666)
                      +++|+++++||+||+||+ +|++|+|.+||+++.+|+.|.+++|++.++.   +.++++|++      +.++++++++++
T Consensus       456 ~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~  534 (573)
T PRK05605        456 EEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREH  534 (573)
T ss_pred             cCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCCHHHHHHHHHHh
Confidence            999999999999999996 8999999999999999999999999987643   678888875      357889999988


Q ss_pred             CCCcccccccccCcchhHH-HHHHHHhhhhhhhhhccc
Q 005991          604 GIKVIYCFSFRANSHVIFI-ALIHNLCQLYSSKELFRS  640 (666)
Q Consensus       604 ~l~~~~~~~~~~p~~i~~v-~~~~~~~gK~~r~~l~~~  640 (666)
                       ++     .+++|..|+++ ++|++.+||++|++|++.
T Consensus       535 -l~-----~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~  566 (573)
T PRK05605        535 -LT-----RYKVPRRFYHVDELPRDQLGKVRRREVREE  566 (573)
T ss_pred             -Cc-----cccCCcEEEEeccCCCCCcccccHHHHHHH
Confidence             88     89999999888 588888899999999764

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=7.6e-66  Score=566.74  Aligned_cols=468  Identities=26%  Similarity=0.363  Sum_probs=397.3

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      +.|+.+.|.++++++||++|+.+.   +      +.+||+||.++++++|++|.+.|+++|++|+++++|+++|+++++|
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA   71 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            468999999999999999999754   2      4599999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehH
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (666)
                      |+++|++++|+++.++.+++.+++++++++.++++......+.....                             ..++
T Consensus        72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-----------------------------~~~~  122 (483)
T PRK03640         72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS-----------------------------VKFA  122 (483)
T ss_pred             HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc-----------------------------ccHH
Confidence            99999999999999999999999999999999998765443221100                             1133


Q ss_pred             HHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHH
Q 005991          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIV  317 (666)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~  317 (666)
                      ++...............++++++++|||||||.||+|++||+++...+......+++.++|++++.+|++|.+++...+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~  202 (483)
T PRK03640        123 ELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMR  202 (483)
T ss_pred             HHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHH
Confidence            33222211112223346789999999999999999999999999887776666688899999999999999999988888


Q ss_pred             HHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChh
Q 005991          318 SVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM  396 (666)
Q Consensus       318 ~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~  396 (666)
                      ++..|+++++.+ .++..+++.++++++|++.++|+++..|.......                                
T Consensus       203 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------------  250 (483)
T PRK03640        203 SVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG--------------------------------  250 (483)
T ss_pred             HHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------------
Confidence            999999999988 79999999999999999999999999886521100                                


Q ss_pred             hhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC--CCCCCCccCCccCcEE
Q 005991          397 WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--DNLSGHVGSPNPACEI  474 (666)
Q Consensus       397 ~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v  474 (666)
                                 ....++|.+++||+++++.+.+.++. +++++++.||+||++..++.....  ....+++|+|++++++
T Consensus       251 -----------~~~~~lr~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~  318 (483)
T PRK03640        251 -----------TYPSSFRCMLLGGGPAPKPLLEQCKE-KGIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCEL  318 (483)
T ss_pred             -----------ccCCcceEEEEcCCCCCHHHHHHHHH-hCCCeeeeeccCcccccccccCcccccccCCCcccccCCcEE
Confidence                       01148999999999999999998887 599999999999987644433332  2456899999999999


Q ss_pred             EEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCee
Q 005991          475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGE  554 (666)
Q Consensus       475 ~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~  554 (666)
                      +|.| ++ ..++.+.   .|||+++|++++.||+++++.+++.| .+|||+|||+|++++||.++++||+||++|+ +|+
T Consensus       319 ~i~~-~~-~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~-~G~  391 (483)
T PRK03640        319 KIEK-DG-VVVPPFE---EGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIIS-GGE  391 (483)
T ss_pred             EEec-CC-CcCCCCC---ceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEeecccCeEEe-CCE
Confidence            9998 33 4555554   89999999999999999999999998 6899999999999999999999999999997 899


Q ss_pred             eeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC----hhHHHHHHHHcCCCcccccccccCcchhHH-HHHH
Q 005991          555 YVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD----PDVLKDWAASQGIKVIYCFSFRANSHVIFI-ALIH  626 (666)
Q Consensus       555 ~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~----~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v-~~~~  626 (666)
                      +|+|.+||+.+.++|+|.+++|++.+++   +.++++++++    .++++++++++ ++     .+++|..|+++ ++|+
T Consensus       392 ~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~-----~~~~p~~i~~~~~iP~  465 (483)
T PRK03640        392 NIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEVTEEELRHFCEEK-LA-----KYKVPKRFYFVEELPR  465 (483)
T ss_pred             EECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCCCHHHHHHHHHHh-cc-----CCCCCcEEEEeCCCCC
Confidence            9999999999999999999999987653   4677777753    47899999988 88     99999999988 4888


Q ss_pred             HHhhhhhhhhhccc
Q 005991          627 NLCQLYSSKELFRS  640 (666)
Q Consensus       627 ~~~gK~~r~~l~~~  640 (666)
                      +.+||++|++|++.
T Consensus       466 t~~gK~~r~~l~~~  479 (483)
T PRK03640        466 NASGKLLRHELKQL  479 (483)
T ss_pred             CCccceeHHHHHHH
Confidence            88899999999875

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.5e-65  Score=574.03  Aligned_cols=500  Identities=23%  Similarity=0.352  Sum_probs=398.8

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHhHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ..++.++|.++++++|+++|+...   +      +.+||.||.++++++|++|.+. |+++||+|+++++|+++|+++++
T Consensus        23 ~~~~~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l   93 (562)
T PRK12492         23 YKSVVEVFERSCKKFADRPAFSNL---G------VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF   93 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEecC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999999643   1      3599999999999999999985 99999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeC--CCCCCCC-----------
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVG--GKDEHLP-----------  223 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~--~~~~~~~-----------  223 (666)
                      ||+++|++++|+++.++.+++.+++++++++++++++.....+....... ....++...  +......           
T Consensus        94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (562)
T PRK12492         94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT-GIEYLIEAKMGDLLPAAKGWLVNTVVDKV  172 (562)
T ss_pred             HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc-CceEEEeechhhccccccchhcccccccc
Confidence            99999999999999999999999999999999999876554444332221 112221110  0000000           


Q ss_pred             -C-CCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccc--------
Q 005991          224 -S-LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ--------  293 (666)
Q Consensus       224 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~--------  293 (666)
                       . ..........+|+++...+........+..++++++|+|||||||.||||+++|+++...+......+.        
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~  252 (562)
T PRK12492        173 KKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQP  252 (562)
T ss_pred             cccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccc
Confidence             0 000000122456666554332222223456789999999999999999999999999877655433321        


Q ss_pred             -cCC-CcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhc
Q 005991          294 -FYP-SDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKAS  368 (666)
Q Consensus       294 -~~~-~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  368 (666)
                       +.. .+++++.+|++|.+++.. .+..+..|++.++..  .++..+++.++++++|++.++|+++..+......     
T Consensus       253 ~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-----  327 (562)
T PRK12492        253 LMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGF-----  327 (562)
T ss_pred             cccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCc-----
Confidence             223 357889999999999876 455677888776654  5889999999999999999999999887652100     


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchh
Q 005991          369 GTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTET  448 (666)
Q Consensus       369 ~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~  448 (666)
                                                   .        .....++|.+++||+++++++.+.|++.++++++++||+||+
T Consensus       328 -----------------------------~--------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~  370 (562)
T PRK12492        328 -----------------------------K--------DLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTET  370 (562)
T ss_pred             -----------------------------c--------cccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCcccc
Confidence                                         0        000147999999999999999999998889999999999999


Q ss_pred             hhhhhccCCCC-CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecc
Q 005991          449 SCIISAIDKGD-NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTG  527 (666)
Q Consensus       449 ~~~~~~~~~~~-~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TG  527 (666)
                      +.+++...... ...+++|+|+++++++|+| +++..++.+.   .|||+++|+.++.|||++++.|++.|+.+|||+||
T Consensus       371 ~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG  446 (562)
T PRK12492        371 SPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNELPLGE---RGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTG  446 (562)
T ss_pred             CceeeecCCcccccCCccceecCCCEEEEEC-CCCCCCCCCC---ceEEEEeCCccccccccCchhhhhcccCCCceecC
Confidence            87665443322 3457899999999999999 5666666655   89999999999999999999999999778999999


Q ss_pred             cEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc-----ChhHHHHH
Q 005991          528 DIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV-----DPDVLKDW  599 (666)
Q Consensus       528 Dlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~l~~~  599 (666)
                      |+|+++++|.++|.||.||+||+ +|++|+|.+||+.+.+||.|.+++|++.++.   +.+++++++     +.++++++
T Consensus       447 D~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~  525 (562)
T PRK12492        447 DIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLSVEELKAY  525 (562)
T ss_pred             cEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999997 7999999999999999999999999997653   568888875     34788999


Q ss_pred             HHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          600 AASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       600 ~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++++ ++     .|++|.++.+++ +|++.+||++|++|++.
T Consensus       526 ~~~~-l~-----~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~  561 (562)
T PRK12492        526 CKEN-FT-----GYKVPKHIVLRDSLPMTPVGKILRRELRDI  561 (562)
T ss_pred             HHHh-cc-----cccCCcEEEEeccCCCCCCCceeHHHHHhh
Confidence            9998 88     899999999995 88888899999999864

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.5e-65  Score=568.13  Aligned_cols=496  Identities=21%  Similarity=0.297  Sum_probs=407.0

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .++.++|+..++++|++.++.++.  +   ++++.+||.||.++++++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~--~---~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~   84 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRRV--E---GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGV   84 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEeec--c---CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            478999999999999998886541  1   23567999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHH
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (666)
                      +++|++++|+++.++++++.++++++++++++++....+.+.+.....+.++.++..++... ..    .....+.++++
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~  159 (539)
T PRK07008         85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAH-LP----AGSTPLLCYET  159 (539)
T ss_pred             HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCc-cc----cCCcccccHHH
Confidence            99999999999999999999999999999999998877776666666666777666554321 11    11233567777


Q ss_pred             HHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHH--hhcccccccCCCcEEEEcCChHHHHHHHHHH
Q 005991          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV--AGFSLMVQFYPSDIYMSYLPLAHIYERANQI  316 (666)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~--~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~  316 (666)
                      +....... .......++++++++|||||||.||||++||++++...  ......+++.++|++++.+|++|.+++...+
T Consensus       160 l~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~  238 (539)
T PRK07008        160 LVGAQDGD-YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPY  238 (539)
T ss_pred             HhcccCCC-cCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHH
Confidence            65443221 12234567899999999999999999999999986433  2333457788899999999999998877777


Q ss_pred             HHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCC
Q 005991          317 VSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS  394 (666)
Q Consensus       317 ~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~  394 (666)
                      .++..|+++++.+  +++..+++.++++++|++.++|+++..+.+......                             
T Consensus       239 ~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~-----------------------------  289 (539)
T PRK07008        239 SAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG-----------------------------  289 (539)
T ss_pred             HHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC-----------------------------
Confidence            8899999999875  689999999999999999999999988765321100                             


Q ss_pred             hhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC-----------CCCC
Q 005991          395 KMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-----------NLSG  463 (666)
Q Consensus       395 ~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----------~~~~  463 (666)
                                   ...+++|.+++||+++++++.+.+.+.+++++++.||+||++..++......           ....
T Consensus       290 -------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (539)
T PRK07008        290 -------------LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLE  356 (539)
T ss_pred             -------------CCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCchhhhhhcc
Confidence                         0014899999999999999999998889999999999999986554332110           1236


Q ss_pred             CccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 005991          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR  543 (666)
Q Consensus       464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR  543 (666)
                      ++|+|+|+++++|+| ++++.++.+. +..|||+++|+.++.||+++++   ..+ .+|||+|||+|++|+||+++++||
T Consensus       357 ~~G~p~pg~~~~i~d-~~~~~~~~~~-~~~Gei~v~g~~~~~gy~~~~~---~~~-~~g~~~TGD~~~~~~dg~l~~~GR  430 (539)
T PRK07008        357 KQGRVIYGVDMKIVG-DDGRELPWDG-KAFGDLQVRGPWVIDRYFRGDA---SPL-VDGWFPTGDVATIDADGFMQITDR  430 (539)
T ss_pred             cCCccccceEEEEEC-CCCCccCCCC-CcceEEEEeCCccchhhcCChh---hhh-cCCCcccCceEEEcCCCcEEEeec
Confidence            799999999999999 4555554332 1369999999999999999984   344 479999999999999999999999


Q ss_pred             CCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc------ChhHHHHHHHHcCCCcccccccc
Q 005991          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV------DPDVLKDWAASQGIKVIYCFSFR  614 (666)
Q Consensus       544 ~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~~l~~~~~~~~~  614 (666)
                      ++|+||. +|++|+|.+||+++..||.|.+++|++.++.   +.++++|+.      +++++.++++++ ++     .|+
T Consensus       431 ~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~-----~~~  503 (539)
T PRK07008        431 SKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGK-VA-----KWW  503 (539)
T ss_pred             ccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccCHHHHHHHHHhh-cc-----ccc
Confidence            9999996 8999999999999999999999999997753   467777764      347899999998 88     899


Q ss_pred             cCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          615 ANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       615 ~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +|+.|.+++ +|++.+||++|++|++.
T Consensus       504 ~P~~i~~v~~lP~t~sgKi~r~~l~~~  530 (539)
T PRK07008        504 IPDDVVFVDAIPHTATGKLQKLKLREQ  530 (539)
T ss_pred             CCeEEEEecCCCCCCccceeHHHHHHH
Confidence            999999885 88888899999999875

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-65  Score=569.76  Aligned_cols=488  Identities=22%  Similarity=0.283  Sum_probs=403.2

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...|+.++|...++++||++|+.+.   +      +.+||+||.++++++|..|.+.|+++|++|+++++|+++++++++
T Consensus         5 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l   75 (528)
T PRK07470          5 RVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF   75 (528)
T ss_pred             cCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4578999999999999999999753   2      349999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ||+++|++++|+++.++.+++.+++++++++.++++....+.+.......+....++.++...            ...++
T Consensus        76 A~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~  143 (528)
T PRK07470         76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR------------AGLDY  143 (528)
T ss_pred             HHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc------------ccccH
Confidence            999999999999999999999999999999999999877665555444444555555554321            01356


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc--cccCCCcEEEEcCChHHHHHHHH
Q 005991          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM--VQFYPSDIYMSYLPLAHIYERAN  314 (666)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~~~~~  314 (666)
                      +++...............++++++|+|||||||.||||+++|+++...+......  .+...+|+++.++|++|.+++..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~  223 (528)
T PRK07470        144 EALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ  223 (528)
T ss_pred             HHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHH
Confidence            6655433222222334567899999999999999999999999997655432222  24677899999999999999876


Q ss_pred             HHHHHHhCcEEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCC
Q 005991          315 QIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ  391 (666)
Q Consensus       315 ~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~  391 (666)
                      .+ .++.|++.++++   .++..+++.|+++++|++.++|+++..+.+....                            
T Consensus       224 ~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------  274 (528)
T PRK07470        224 LC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV----------------------------  274 (528)
T ss_pred             HH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc----------------------------
Confidence            54 567777776664   6899999999999999999999999887542100                            


Q ss_pred             CCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCC--------CCCCCC
Q 005991          392 TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK--------GDNLSG  463 (666)
Q Consensus       392 ~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~--------~~~~~~  463 (666)
                                    .....+++|.+++||++++++..+++.+.+|..+++.||+||+++.++....        .....+
T Consensus       275 --------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~  340 (528)
T PRK07470        275 --------------DRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIG  340 (528)
T ss_pred             --------------CCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccccccceee
Confidence                          0001148999999999999999999988889999999999998876554322        123457


Q ss_pred             CccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 005991          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR  543 (666)
Q Consensus       464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR  543 (666)
                      ++|.|+++++++++| ++++.++.++   .|||+++|+.++.||+++++.+++.| .+|||+|||+|++++||++++.||
T Consensus       341 ~~G~~~~g~~~~i~d-~~~~~~~~g~---~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR  415 (528)
T PRK07470        341 TCGFERTGMEVQIQD-DEGRELPPGE---TGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGR  415 (528)
T ss_pred             ccCcccCCcEEEEEC-CCCCCCCCCC---ceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEeCC
Confidence            899999999999999 5666666665   89999999999999999999999988 689999999999999999999999


Q ss_pred             CCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc------ChhHHHHHHHHcCCCcccccccc
Q 005991          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV------DPDVLKDWAASQGIKVIYCFSFR  614 (666)
Q Consensus       544 ~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~~l~~~~~~~~~  614 (666)
                      .||+||+ +|++|+|.+||+++.++|+|.+|+|++.++.   +.+++++++      +.++++++++++ ++     .++
T Consensus       416 ~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~-----~~~  488 (528)
T PRK07470        416 ASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGK-VA-----RYK  488 (528)
T ss_pred             ccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCHHHHHHHHHHh-hh-----cCC
Confidence            9999997 8999999999999999999999999998754   467788874      446889999988 88     999


Q ss_pred             cCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          615 ANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       615 ~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +|..+++++ +|++.+||++|++|++.
T Consensus       489 ~P~~~~~~~~iP~t~~GKi~r~~l~~~  515 (528)
T PRK07470        489 LPKRFFFWDALPKSGYGKITKKMVREE  515 (528)
T ss_pred             CCcEEEEeccCCCCCcccccHHHHHHH
Confidence            999998885 88888899999999754

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=1.3e-65  Score=572.71  Aligned_cols=506  Identities=24%  Similarity=0.329  Sum_probs=407.7

Q ss_pred             cCccccCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCC
Q 005991           55 KWNVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHG  134 (666)
Q Consensus        55 ~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~g  134 (666)
                      ...+||+.....       +.+...|+.++|.+.++++|+++|+.+.   .+    .+.+||+||.+++.++|++|.+.|
T Consensus        11 ~~~~~~~~~~~~-------~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~~l~~~~~~la~~L~~~g   76 (546)
T PLN02330         11 NEHIFRSRYPSV-------PVPDKLTLPDFVLQDAELYADKVAFVEA---VT----GKAVTYGEVVRDTRRFAKALRSLG   76 (546)
T ss_pred             cceeeccCCCCC-------CCCCCCcHHHHHhhhhhcCCCccEEEec---CC----CCcccHHHHHHHHHHHHHHHHHhC
Confidence            345666664442       1245688999999999999999999753   11    145999999999999999999999


Q ss_pred             CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEE
Q 005991          135 LQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVV  214 (666)
Q Consensus       135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~  214 (666)
                      +++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++......+...     ... ++.
T Consensus        77 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~i~  150 (546)
T PLN02330         77 LRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL-----GLP-VIV  150 (546)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc-----CCc-EEE
Confidence            99999999999999999999999999999999999999999999999999999999998776655432     122 333


Q ss_pred             eCCCCCCCCCCCCCCCcEEEehHHHHhcCCCCC--CCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccccc
Q 005991          215 VGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSP--QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV  292 (666)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~  292 (666)
                      ++...          ......|++++.......  .......++++++|+|||||||.||||++||+++...+.......
T Consensus       151 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~  220 (546)
T PLN02330        151 LGEEK----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV  220 (546)
T ss_pred             ecCCC----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc
Confidence            33211          001234666654432211  112234578999999999999999999999999987665322111


Q ss_pred             c--cCCCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhc
Q 005991          293 Q--FYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKAS  368 (666)
Q Consensus       293 ~--~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  368 (666)
                      +  ....++++..+|++|.+++.. ++.++..|+++++.+ +++..+++.++++++|++.++|+++..+......     
T Consensus       221 ~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----  295 (546)
T PLN02330        221 GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIV-----  295 (546)
T ss_pred             CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccc-----
Confidence            1  223568999999999999875 567889999998877 7999999999999999999999999887652100     


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccch
Q 005991          369 GTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTE  447 (666)
Q Consensus       369 ~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE  447 (666)
                                                   ....+.      ..++|.+++||+++++++.+++.+.+ ++++++.||+||
T Consensus       296 -----------------------------~~~~~~------~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE  340 (546)
T PLN02330        296 -----------------------------EEFDLS------KLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTE  340 (546)
T ss_pred             -----------------------------cccccc------hheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccc
Confidence                                         000000      01589999999999999999999988 899999999999


Q ss_pred             hhhhhhccC-CC----CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCC
Q 005991          448 TSCIISAID-KG----DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG  522 (666)
Q Consensus       448 ~~~~~~~~~-~~----~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g  522 (666)
                      ++++..... +.    ....+++|.|+++++++|+|+++++.++.++   .|||+|+|++++.||+++++.+++.++.+|
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g  417 (546)
T PLN02330        341 HSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNT---PGELCVRSQCVMQGYYNNKEETDRTIDEDG  417 (546)
T ss_pred             cccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCC---ceEEEEecchhhhhhccCccchhhhccCCC
Confidence            876543221 11    1334689999999999999976777776665   899999999999999999999999998899


Q ss_pred             eeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------h
Q 005991          523 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------P  593 (666)
Q Consensus       523 w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~  593 (666)
                      ||+|||+|++++||.++++||.+|+||+ +|++|+|.+||+++.++|+|.+++|++.+++   +.++++|++.      .
T Consensus       418 ~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~  496 (546)
T PLN02330        418 WLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESE  496 (546)
T ss_pred             ceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCCCH
Confidence            9999999999999999999999999997 7999999999999999999999999996643   5788888863      3


Q ss_pred             hHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          594 DVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       594 ~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++++++++++ ++     .++.|+.+.+++ +|++.+||++|++|++.
T Consensus       497 ~~l~~~~~~~-l~-----~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~  538 (546)
T PLN02330        497 EDILNFVAAN-VA-----HYKKVRVVQFVDSIPKSLSGKIMRRLLKEK  538 (546)
T ss_pred             HHHHHHHHHh-cc-----cccCceEEEEeccCCCCCCcceeHHHHHHH
Confidence            6789999988 88     999999888885 88888899999998764

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-65  Score=565.49  Aligned_cols=469  Identities=19%  Similarity=0.230  Sum_probs=392.6

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      +++.+.|+++++++||++|+.+.   +      ..+||.||.++++++|++|.+.|. +|++|+|+++|+++|+++++||
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~   70 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA   70 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence            36789999999999999999753   2      359999999999999999999984 8999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHH
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (666)
                      +++|++++|+++.++++++.++++.++++.++++......+...      ...++.++.                  +.+
T Consensus        71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~------------------~~~  126 (487)
T PRK07638         71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------EGRVIEIDE------------------WKR  126 (487)
T ss_pred             HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------cceEEEehh------------------hhh
Confidence            99999999999999999999999999999999987654333211      011222211                  111


Q ss_pred             HHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHH
Q 005991          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS  318 (666)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~  318 (666)
                      ....... .........+++++|+|||||||.||||+++|++++..+......+++.++|+++...|++|..++...+.+
T Consensus       127 ~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~  205 (487)
T PRK07638        127 MIEKYLP-TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAIST  205 (487)
T ss_pred             hhhhccc-cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHH
Confidence            1111111 011112235678999999999999999999999999888877777888999999999999999888778889


Q ss_pred             HHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhh
Q 005991          319 VYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW  397 (666)
Q Consensus       319 l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~  397 (666)
                      ++.|+++++.+ +++..+++.++++++|+++++|+++..|.+..                                    
T Consensus       206 l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------------------  249 (487)
T PRK07638        206 LYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKEN------------------------------------  249 (487)
T ss_pred             HccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc------------------------------------
Confidence            99999999887 79999999999999999999999998886520                                    


Q ss_pred             hHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCC-CCCCCCccCCccCcEEE
Q 005991          398 DRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIK  475 (666)
Q Consensus       398 d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~  475 (666)
                                ....+.+.+++||+++++++.+++.+.+ ++.+++.||+||++.++...... ....+++|+|+++++++
T Consensus       250 ----------~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  319 (487)
T PRK07638        250 ----------RVIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVR  319 (487)
T ss_pred             ----------CcCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEE
Confidence                      0012456678899999999999999888 78999999999998765544322 24567899999999999


Q ss_pred             EEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeee
Q 005991          476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY  555 (666)
Q Consensus       476 ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~  555 (666)
                      |+| +++..++.+.   .|||+++|+.++.||+++++.+.+.+ .+|||+|||+|++|+||+++++||++|+||+ +|++
T Consensus       320 i~d-~~g~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~-~G~~  393 (487)
T PRK07638        320 ICN-EAGEEVQKGE---IGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIVGREKNMILF-GGIN  393 (487)
T ss_pred             EEC-CCCCCCCCCC---CeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEEecCCCeEEe-CCEE
Confidence            999 5566666554   89999999999999999999888766 7899999999999999999999999999997 8999


Q ss_pred             eccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc--ChhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHh
Q 005991          556 VAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV--DPDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLC  629 (666)
Q Consensus       556 v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~--~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~  629 (666)
                      |+|.+||+++.+||+|.+|+|++.++.   +.++++|+.  +.++++++++++ ++     .+++|..+++++ +|++.+
T Consensus       394 v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~l~~~~~~~-l~-----~~~~p~~i~~v~~iP~t~~  467 (487)
T PRK07638        394 IFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSATKQQLKSFCLQR-LS-----SFKIPKEWHFVDEIPYTNS  467 (487)
T ss_pred             ECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCCCHHHHHHHHHHH-hh-----cccCCcEEEEecccCCCCc
Confidence            999999999999999999999998754   578888875  457899999998 87     899999999985 788888


Q ss_pred             hhhhhhhhccc
Q 005991          630 QLYSSKELFRS  640 (666)
Q Consensus       630 gK~~r~~l~~~  640 (666)
                      ||++|++|++.
T Consensus       468 GKv~r~~L~~~  478 (487)
T PRK07638        468 GKIARMEAKSW  478 (487)
T ss_pred             ccccHHHHHHH
Confidence            99999999865

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=2.3e-65  Score=567.64  Aligned_cols=490  Identities=22%  Similarity=0.301  Sum_probs=412.0

Q ss_pred             CHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005991           80 TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS  159 (666)
Q Consensus        80 tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~  159 (666)
                      +++++|...++++|+++|+.+.   +      +.+||+||.+++.++|++|.+.|+++|++|+++++|+++++++++||+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~   71 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA   71 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4688999999999999999764   2      359999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHH
Q 005991          160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL  239 (666)
Q Consensus       160 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (666)
                      ++|++++|+++.++.+++..++++++++++|++......+......++.+..++.+++.....     ........|+++
T Consensus        72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  146 (515)
T TIGR03098        72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHAS-----EGGGESPSWPKL  146 (515)
T ss_pred             hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCccccc-----CCccccccHHHh
Confidence            999999999999999999999999999999999877666655555556666666665432111     112233456666


Q ss_pred             HhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHH
Q 005991          240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSV  319 (666)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l  319 (666)
                      ......  ....+...+++++|+|||||||.||||++||+++...+......+++..+|++++.+|++|.+++...+.++
T Consensus       147 ~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l  224 (515)
T TIGR03098       147 LALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAF  224 (515)
T ss_pred             hccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHH
Confidence            543322  122334568999999999999999999999999998888777777888999999999999999998888999


Q ss_pred             HhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhh
Q 005991          320 YYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWD  398 (666)
Q Consensus       320 ~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d  398 (666)
                      ..|+++++.+ .++..+++.++++++|++.++|+++..|.....                             .+     
T Consensus       225 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------------~~-----  270 (515)
T TIGR03098       225 YVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-----------------------------PE-----  270 (515)
T ss_pred             HcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-----------------------------CC-----
Confidence            9999999887 789999999999999999999999988754100                             00     


Q ss_pred             HHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCC-CCCCCCCccCCccCcEEEE
Q 005991          399 RLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDK-GDNLSGHVGSPNPACEIKL  476 (666)
Q Consensus       399 ~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~~v~i  476 (666)
                               ....++|.+++||+++++++.+.+++.+ ++.+++.||+||++........ .....+++|+|+++++++|
T Consensus       271 ---------~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i  341 (515)
T TIGR03098       271 ---------SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLV  341 (515)
T ss_pred             ---------CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEE
Confidence                     0114899999999999999999999988 7889999999998754433221 1345689999999999999


Q ss_pred             EecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCC-----------CCeeecccEEEEecCCcEEEEccCC
Q 005991          477 VDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG-----------DGWLHTGDIGLWLPGGRLKIIDRKK  545 (666)
Q Consensus       477 vd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~-----------~gw~~TGDlg~~~~dG~l~i~GR~~  545 (666)
                      +| +++..++.++   .|||+++|+.++.|||++++.|++.|..           ++||+|||+|++++||++++.||.|
T Consensus       342 ~~-~~~~~~~~~~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~  417 (515)
T TIGR03098       342 LR-EDGSECAPGE---EGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRD  417 (515)
T ss_pred             EC-CCCCCCCCCC---ceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccc
Confidence            99 5666666554   8999999999999999999999877642           3489999999999999999999999


Q ss_pred             CeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc------ChhHHHHHHHHcCCCcccccccccC
Q 005991          546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV------DPDVLKDWAASQGIKVIYCFSFRAN  616 (666)
Q Consensus       546 d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~~l~~~~~~~~~~p  616 (666)
                      |+||+ +|++|+|.+||+++.+||.|.+|+|++.++.   +.+++++++      +.++++++++++ ++     .+++|
T Consensus       418 d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~-----~~~~p  490 (515)
T TIGR03098       418 EMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRAR-LP-----NYMVP  490 (515)
T ss_pred             cceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCCHHHHHHHHHhh-Cc-----cccCC
Confidence            99997 8999999999999999999999999997643   578888874      346889999988 88     89999


Q ss_pred             cchhHHH-HHHHHhhhhhhhhhcc
Q 005991          617 SHVIFIA-LIHNLCQLYSSKELFR  639 (666)
Q Consensus       617 ~~i~~v~-~~~~~~gK~~r~~l~~  639 (666)
                      ..+++++ +|++.+||++|++|++
T Consensus       491 ~~i~~v~~iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       491 ALIHVRQALPRNANGKIDRKALAA  514 (515)
T ss_pred             CEEEEeccCCCCCCCCCcHHHhcc
Confidence            9999995 8888889999999975

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.2e-65  Score=570.30  Aligned_cols=489  Identities=24%  Similarity=0.333  Sum_probs=413.5

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      .-+|+.+.+.+.++.+|+++|+.+.   +.      .+||.||.++++++|.+|.+.|+++|++|+|+++|+++|+++++
T Consensus        15 ~~~n~~~~~~~~a~~~~~~~a~~~~---~~------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~   85 (542)
T PRK07786         15 RRQNWVNQLARHALMQPDAPALRFL---GN------TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL   85 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEEeC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578999999999999999999764   33      49999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ||+++|++++|+++.++.+++.++++++++++++++......+.......+.++.++..++...          ....++
T Consensus        86 a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~  155 (542)
T PRK07786         86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSD----------DSVLGY  155 (542)
T ss_pred             HHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCc----------ccccCH
Confidence            9999999999999999999999999999999999998776666555445566676666543210          112456


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccccccc-CCCcEEEEcCChHHHHHHHHH
Q 005991          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF-YPSDIYMSYLPLAHIYERANQ  315 (666)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~~~~~~  315 (666)
                      +++....... .+......+++++++|||||||.||||++||+++...+......+++ ..++++++.+|++|.+++...
T Consensus       156 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~  234 (542)
T PRK07786        156 EDLLAEAGPA-HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSM  234 (542)
T ss_pred             HHHhhccCCC-CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHH
Confidence            6665433221 12233456789999999999999999999999998888766666666 578999999999999999888


Q ss_pred             HHHHHhCcEEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991          316 IVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (666)
Q Consensus       316 ~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (666)
                      +.++..|+++++.+   .++..+++.++++++|.++++|+++..+.......                            
T Consensus       235 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~----------------------------  286 (542)
T PRK07786        235 LPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQAR----------------------------  286 (542)
T ss_pred             HHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccC----------------------------
Confidence            88999999999865   68999999999999999999999999886531100                            


Q ss_pred             CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCC--CCCCCccCCc
Q 005991          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD--NLSGHVGSPN  469 (666)
Q Consensus       393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~  469 (666)
                      .               ...++|.+++||+++++++.+.+++.+ ++++++.||+||++.+.+......  ...+++|+|+
T Consensus       287 ~---------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~  351 (542)
T PRK07786        287 P---------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVI  351 (542)
T ss_pred             c---------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccC
Confidence            0               002689999999999999999999888 789999999999987655433222  3557899999


Q ss_pred             cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 005991          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (666)
Q Consensus       470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik  549 (666)
                      ++++++|+| ++++.++.+.   .|||+++|+.++.||+++++.|++.| .+|||+|||+++++++|.++++||.||+||
T Consensus       352 ~~~~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~  426 (542)
T PRK07786        352 PTVAARVVD-ENMNDVPVGE---VGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRKKDMII  426 (542)
T ss_pred             CCceEEEEC-CCCCCCcCCC---ceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcCCceEEEEecccceEE
Confidence            999999999 5666666554   89999999999999999999999999 689999999999999999999999999999


Q ss_pred             cCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC-------hhHHHHHHHHcCCCcccccccccCcch
Q 005991          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD-------PDVLKDWAASQGIKVIYCFSFRANSHV  619 (666)
Q Consensus       550 l~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-------~~~l~~~~~~~~l~~~~~~~~~~p~~i  619 (666)
                      + +|++|+|.+||+++.+||.|.+|+|++.+++   +.++++|++.       .+++.++++++ ++     .|++|..+
T Consensus       427 ~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~-l~-----~~~~P~~i  499 (542)
T PRK07786        427 S-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDR-LA-----RYKHPKAL  499 (542)
T ss_pred             e-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCHHHHHHHHHhh-cc-----CCCCCCEE
Confidence            7 8999999999999999999999999997643   5788888754       25688999988 88     89999999


Q ss_pred             hHHH-HHHHHhhhhhhhhhccc
Q 005991          620 IFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       620 ~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      .+++ +|++.+||++|++|++.
T Consensus       500 ~~v~~iP~t~~GKv~r~~L~~~  521 (542)
T PRK07786        500 EIVDALPRNPAGKVLKTELRER  521 (542)
T ss_pred             EEeccCCCCCcccccHHHHHHH
Confidence            9995 77888899999999887

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=5.1e-65  Score=568.51  Aligned_cols=491  Identities=20%  Similarity=0.287  Sum_probs=407.0

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .|+.++|++.++++||++|+.+.   ++     +.+||+||.++++++|++|++.|+++||+|+++++|+++|+++++||
T Consensus        23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~   94 (547)
T PRK06087         23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC   94 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            57999999999999999999753   22     35999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccc-----cHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEE
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ-----TLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL  233 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~-----~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~  233 (666)
                      +++|++++|+++.++.+++.++++.+++++++++..     ..+.+.+....++.++.++.++......         ..
T Consensus        95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  165 (547)
T PRK06087         95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPAT---------SS  165 (547)
T ss_pred             HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCc---------Cc
Confidence            999999999999999999999999999999999753     2334444445566666777665432110         11


Q ss_pred             EehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHH
Q 005991          234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA  313 (666)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~  313 (666)
                      .++.++....... .......++++++|+|||||||.||||++||+++......+...+++.++|++++.+|++|.+++.
T Consensus       166 ~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~  244 (547)
T PRK06087        166 LSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFL  244 (547)
T ss_pred             cCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHH
Confidence            2455544332221 122335678999999999999999999999999988877777777889999999999999999976


Q ss_pred             H-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCC
Q 005991          314 N-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ  391 (666)
Q Consensus       314 ~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~  391 (666)
                      . .+.+++.|+++++.+ .++..+++.++++++|+++++|..+..++......                           
T Consensus       245 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~---------------------------  297 (547)
T PRK06087        245 HGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ---------------------------  297 (547)
T ss_pred             HHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC---------------------------
Confidence            5 567889999999887 79999999999999999998888776665421100                           


Q ss_pred             CCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC--CCCCCccCCc
Q 005991          392 TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD--NLSGHVGSPN  469 (666)
Q Consensus       392 ~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~  469 (666)
                                     ....+++|.+++||+++++++.+.+.. +|+++++.||+||++...+......  ...+++|.|+
T Consensus       298 ---------------~~~~~~lr~i~~gG~~~~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~  361 (547)
T PRK06087        298 ---------------PADLSALRFFLCGGTTIPKKVARECQQ-RGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAA  361 (547)
T ss_pred             ---------------CCCCCCeEEEEEcCCCCCHHHHHHHHH-cCCcEEEEecccccCCccccCCCcchhhcCCcCCccC
Confidence                           000148999999999999999998877 4999999999999987655433221  2346789999


Q ss_pred             cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 005991          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (666)
Q Consensus       470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik  549 (666)
                      ++++++++| +++..++.+.   .|||+++|+.++.||+++++.+.+.|+.+|||+|||+|+++++|+++++||.+|+|+
T Consensus       362 ~~~~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~  437 (547)
T PRK06087        362 AGVEIKVVD-EARKTLPPGC---EGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIV  437 (547)
T ss_pred             CCceEEEEc-CCCCCCcCCC---cceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhh
Confidence            999999999 5666666554   899999999999999999999999998899999999999999999999999999999


Q ss_pred             cCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh-------hHHHHHHHHcCCCcccccccccCcch
Q 005991          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP-------DVLKDWAASQGIKVIYCFSFRANSHV  619 (666)
Q Consensus       550 l~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------~~l~~~~~~~~l~~~~~~~~~~p~~i  619 (666)
                      + +|++|+|.+||+++.++|+|.+++|++.+++   +.++++|+++.       +++.+++.+..++     .+++|..|
T Consensus       438 ~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~P~~i  511 (547)
T PRK06087        438 R-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVA-----KYKYPEHI  511 (547)
T ss_pred             c-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCHHHHHHHHHhcccc-----ccCCCeEE
Confidence            6 8999999999999999999999999997644   57888888643       5667776654477     99999999


Q ss_pred             hHHH-HHHHHhhhhhhhhhccc
Q 005991          620 IFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       620 ~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      .+++ +|++.+||++|++|++.
T Consensus       512 ~~v~~iP~t~sGK~~r~~l~~~  533 (547)
T PRK06087        512 VVIDKLPRTASGKIQKFLLRKD  533 (547)
T ss_pred             EEeccCCCCCCCcCcHHHHHHH
Confidence            9995 88888899999999876

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=7.7e-65  Score=568.95  Aligned_cols=496  Identities=24%  Similarity=0.351  Sum_probs=408.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...++.++|.+.++++||++|+.+.   ++.    +.+||+||.++++++|..|.+.|+++|++|+++++|+++|+++++
T Consensus        14 ~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l   86 (559)
T PRK08315         14 LEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQF   86 (559)
T ss_pred             hhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            3458999999999999999999875   322    469999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH-----HHHHHhhhc-------------CCCceEEEEeCCC
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISE-------------IPSVHLIVVVGGK  218 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~-------------~~~l~~ii~~~~~  218 (666)
                      ||+++|++++|+++.++.+++..+++.+++++++++....     ..+.+....             .+..+.++.++..
T Consensus        87 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (559)
T PRK08315         87 ATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE  166 (559)
T ss_pred             HHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeeccc
Confidence            9999999999999999999999999999999999986532     122222111             1334444444331


Q ss_pred             CCCCCCCCCCCCcEEEehHHHHhcCCCC-----CCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccc
Q 005991          219 DEHLPSLPSTSGVKLISYLQLQSQGCSS-----PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ  293 (666)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~  293 (666)
                      .          ......+.++.......     ........++++++++|||||||.||||.+||+++...+......++
T Consensus       167 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~  236 (559)
T PRK08315        167 K----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMK  236 (559)
T ss_pred             C----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcC
Confidence            1          11124555554432110     01122345789999999999999999999999999988887777788


Q ss_pred             cCCCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcch
Q 005991          294 FYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGT  370 (666)
Q Consensus       294 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  370 (666)
                      +.++|+++..+|++|.+++.. ++.++..|+++++..  .++..+++.++++++|++.++|+++..+.......      
T Consensus       237 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~------  310 (559)
T PRK08315        237 LTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFA------  310 (559)
T ss_pred             CCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccC------
Confidence            999999999999999999876 667899999998654  69999999999999999999999998765421000      


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCc-cccCcccchhh
Q 005991          371 LREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETS  449 (666)
Q Consensus       371 ~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~-v~~~YG~TE~~  449 (666)
                                                          ....+++|.+++||+++++++.+.+.+.++.. +++.||+||++
T Consensus       311 ------------------------------------~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~  354 (559)
T PRK08315        311 ------------------------------------RFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETS  354 (559)
T ss_pred             ------------------------------------CCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccc
Confidence                                                00014799999999999999999998888654 99999999998


Q ss_pred             hhhhccCCCC---CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeec
Q 005991          450 CIISAIDKGD---NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHT  526 (666)
Q Consensus       450 ~~~~~~~~~~---~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~T  526 (666)
                      .+++......   ....++|+|+++++++|+|.++++.++.++   .|||+|+|++++.|||++|+.+++.|..++||+|
T Consensus       355 ~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~---~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~T  431 (559)
T PRK08315        355 PVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGE---QGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHT  431 (559)
T ss_pred             cceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCC---ceEEEEECchhhhhhcCChhHHhhcCCCCCCEEc
Confidence            7665443322   356789999999999999966577776665   8999999999999999999999999978999999


Q ss_pred             ccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc------ChhHHH
Q 005991          527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV------DPDVLK  597 (666)
Q Consensus       527 GDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~  597 (666)
                      ||+|++++||.++|+||.+|+||+ +|++|+|.+||+++.++|+|.+++|++.+++   +.++++|++      +.++++
T Consensus       432 GD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  510 (559)
T PRK08315        432 GDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVR  510 (559)
T ss_pred             cceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCHHHHH
Confidence            999999999999999999999996 8999999999999999999999999997654   567888875      346889


Q ss_pred             HHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccch
Q 005991          598 DWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSR  641 (666)
Q Consensus       598 ~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~  641 (666)
                      ++++++ ++     .|++|..+.+++ +|.+.+||++|++|++.-
T Consensus       511 ~~l~~~-l~-----~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~  549 (559)
T PRK08315        511 DFCRGK-IA-----HYKIPRYIRFVDEFPMTVTGKIQKFKMREMM  549 (559)
T ss_pred             HHHHhh-cc-----cccCCcEEEEcccCCCCCCCceeHHHHHHHH
Confidence            999988 88     899999999996 778888999999998763

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.1e-64  Score=560.65  Aligned_cols=484  Identities=25%  Similarity=0.368  Sum_probs=404.4

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .++.+++..++ .+|+++|+...   ++     +.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus         3 ~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~   73 (504)
T PRK07514          3 NNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLAT   73 (504)
T ss_pred             ccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            57899999999 99999999653   22     46999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHH
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (666)
                      +++|++++|+++.++.+++..+++.+++++++++......+....... ....++.++....             ..+.+
T Consensus        74 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------~~~~~  139 (504)
T PRK07514         74 LRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-GAPHVETLDADGT-------------GSLLE  139 (504)
T ss_pred             HHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-CCceEEEecCCCc-------------ccHHH
Confidence            999999999999999999999999999999999987766655443322 2232444433110             01111


Q ss_pred             HHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH-HHH
Q 005991          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIV  317 (666)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~  317 (666)
                      ..... ..........++++++|+|||||||.||||.+||+++...+......+++.++|++++.+|++|.+++.. .+.
T Consensus       140 ~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~  218 (504)
T PRK07514        140 AAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNV  218 (504)
T ss_pred             hhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHH
Confidence            11111 0111123456899999999999999999999999999998877777788899999999999999999876 567


Q ss_pred             HHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChh
Q 005991          318 SVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM  396 (666)
Q Consensus       318 ~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~  396 (666)
                      +++.|+++++.+ .++..+++.+  .++|++.++|.++..++.....                                 
T Consensus       219 ~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~---------------------------------  263 (504)
T PRK07514        219 ALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRL---------------------------------  263 (504)
T ss_pred             HHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCC---------------------------------
Confidence            899999999887 6899999988  4799999999999887642000                                 


Q ss_pred             hhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEE
Q 005991          397 WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKL  476 (666)
Q Consensus       397 ~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i  476 (666)
                               .....+++|.+++||+++++++.+.|++.+++++++.||+||++..++.........+++|.|+++++++|
T Consensus       264 ---------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i  334 (504)
T PRK07514        264 ---------TREAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRV  334 (504)
T ss_pred             ---------CcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccccccCcccccCCCCcEEEE
Confidence                     00011489999999999999999999998999999999999998655433333345678999999999999


Q ss_pred             EecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeee
Q 005991          477 VDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYV  556 (666)
Q Consensus       477 vd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v  556 (666)
                      +|++++..++.++   .|||+|+|++++.||+++++.+++.|..+|||+|||+|+++++|.++++||+||+||+ +|++|
T Consensus       335 ~d~~~~~~~~~g~---~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i  410 (504)
T PRK07514        335 TDPETGAELPPGE---IGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIIS-GGYNV  410 (504)
T ss_pred             EECCCCCCCCCCC---ceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEe-CCeEE
Confidence            9977777776665   8999999999999999999999999988999999999999999999999999999997 89999


Q ss_pred             ccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHHH-HHH
Q 005991          557 APEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIH  626 (666)
Q Consensus       557 ~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~  626 (666)
                      +|.+||+++.++++|.+++|++.+++   +.+++++++.      .+++.++++++ ++     .+++|..+++++ +|+
T Consensus       411 ~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~-----~~~~p~~i~~v~~~p~  484 (504)
T PRK07514        411 YPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALKGR-LA-----RFKQPKRVFFVDELPR  484 (504)
T ss_pred             CHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHHHhh-cc-----cCCCCcEEEEeccCCC
Confidence            99999999999999999999997653   5688888863      46889999988 88     899999999885 778


Q ss_pred             HHhhhhhhhhhccc
Q 005991          627 NLCQLYSSKELFRS  640 (666)
Q Consensus       627 ~~~gK~~r~~l~~~  640 (666)
                      +.+||++|++|++.
T Consensus       485 t~~gK~~r~~l~~~  498 (504)
T PRK07514        485 NTMGKVQKNLLREQ  498 (504)
T ss_pred             CCCcceeHHHHHHH
Confidence            88899999999765

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-64  Score=567.17  Aligned_cols=492  Identities=24%  Similarity=0.358  Sum_probs=404.1

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .++.++|.+.++++|+++|+++.   ++    .+.+||+||.++++++|.+|.+.|+++|++|+++++|+++|+++++||
T Consensus        18 ~~l~~~l~~~~~~~p~~~a~~~~---~~----~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~   90 (558)
T PRK12583         18 QTIGDAFDATVARFPDREALVVR---HQ----ALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFAT   90 (558)
T ss_pred             CcHHHHHHHHHHHCCCCeEEEec---CC----CcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence            58999999999999999999875   22    246999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH-----HHHHHhhhc-------------CCCceEEEEeCCCCC
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISE-------------IPSVHLIVVVGGKDE  220 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~-------------~~~l~~ii~~~~~~~  220 (666)
                      +++|++++|+++.++.+++.+++++++++++|+++...     ..+.+....             ++.++.++..+....
T Consensus        91 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (558)
T PRK12583         91 ARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPP  170 (558)
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCC
Confidence            99999999999999999999999999999999976431     222222111             233344444332210


Q ss_pred             CCCCCCCCCCcEEEehHHHHhcCCCC-----CCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccC
Q 005991          221 HLPSLPSTSGVKLISYLQLQSQGCSS-----PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY  295 (666)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  295 (666)
                                .....|++....+...     ........++++++++|||||||.||||.+||+++.+.+......+++.
T Consensus       171 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~  240 (558)
T PRK12583        171 ----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLT  240 (558)
T ss_pred             ----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCC
Confidence                      0122344443322110     0111234578999999999999999999999999998888777778889


Q ss_pred             CCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHH
Q 005991          296 PSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLR  372 (666)
Q Consensus       296 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  372 (666)
                      ++|++++.+|++|.++... .+.++..|+++++..  .++..+++.++++++|++.++|+++..+.......        
T Consensus       241 ~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------  312 (558)
T PRK12583        241 EHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRG--------  312 (558)
T ss_pred             CCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcccccc--------
Confidence            9999999999999999876 567788999988754  68999999999999999999999987665421000        


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC-CccccCcccchhhhh
Q 005991          373 EKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG-CQVMEGYGMTETSCI  451 (666)
Q Consensus       373 ~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~  451 (666)
                                       +      .           -.+++|.+++||+++++++.+++.+.++ ..+.+.||+||++.+
T Consensus       313 -----------------~------~-----------~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~  358 (558)
T PRK12583        313 -----------------N------F-----------DLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPV  358 (558)
T ss_pred             -----------------C------C-----------CchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccc
Confidence                             0      0           0137999999999999999999988775 579999999999987


Q ss_pred             hhccCCC---CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeeccc
Q 005991          452 ISAIDKG---DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGD  528 (666)
Q Consensus       452 ~~~~~~~---~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGD  528 (666)
                      ++.....   .....++|+|.++++++|+|++ +..++.++   .|||+++|+.++.||+++++.+.+.|+.+|||+|||
T Consensus       359 ~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD  434 (558)
T PRK12583        359 SLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGE---IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGD  434 (558)
T ss_pred             eeccCcccccccccCCCCccCCCCeEEEECCC-CCCCCCCC---eeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccc
Confidence            6654322   2356789999999999999954 66666665   899999999999999999999999887899999999


Q ss_pred             EEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHH
Q 005991          529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDW  599 (666)
Q Consensus       529 lg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~  599 (666)
                      +|++++||++++.||+||+||+ +|++|+|.+||+++.++|+|.+++|++.++.   +.++++|+++      .++++++
T Consensus       435 l~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~  513 (558)
T PRK12583        435 LATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREF  513 (558)
T ss_pred             eEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCHHHHHHH
Confidence            9999999999999999999996 8999999999999999999999999997653   5788888753      4688999


Q ss_pred             HHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          600 AASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       600 ~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++++ |+     .+++|..+.+++ +|++.+||++|++|++.
T Consensus       514 ~~~~-L~-----~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~  549 (558)
T PRK12583        514 CKAR-IA-----HFKVPRYFRFVDEFPMTVTGKVQKFRMREI  549 (558)
T ss_pred             HHhh-cc-----cCcCCcEEEEeccCCCCCCCCccHHHHHHH
Confidence            9988 88     899999999885 88888899999999876

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-64  Score=561.82  Aligned_cols=496  Identities=25%  Similarity=0.383  Sum_probs=424.1

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...++.++|.+.++.+|+++|+.+.   ++      .+||+||+++++++|+.|.+.|+++|++|+++++|+++++++++
T Consensus         4 ~~~~l~~~l~~~~~~~p~~~a~~~~---~~------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~l   74 (521)
T PRK06187          4 YPLTIGRILRHGARKHPDKEAVYFD---GR------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYF   74 (521)
T ss_pred             ccCCHHHHHHHHHHHCCCceEEEeC---Cc------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3468999999999999999999764   33      39999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ||+++|++++|+++.++.+++..+++.+++++++++....+.+.+....++.++.++.+++....      .......++
T Consensus        75 a~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  148 (521)
T PRK06187         75 AVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA------PLAPEVGEY  148 (521)
T ss_pred             HHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc------ccccccccH
Confidence            99999999999999999999999999999999999998888887777777777777776654321      111223556


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHH
Q 005991          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI  316 (666)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~  316 (666)
                      .++....... .......++++++++|||||||.||+|.+||+++..........+++.++|++++.+|++|.+++...+
T Consensus       149 ~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  227 (521)
T PRK06187        149 EELLAAASDT-FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPY  227 (521)
T ss_pred             HHHhhcCCcc-CCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHH
Confidence            6665543321 223345678999999999999999999999999998888777788899999999999999999998877


Q ss_pred             HHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCCh
Q 005991          317 VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (666)
Q Consensus       317 ~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (666)
                      .++..|+++++.+ .++..+++.++++++|+++++|+++..|.......                               
T Consensus       228 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~-------------------------------  276 (521)
T PRK06187        228 LALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY-------------------------------  276 (521)
T ss_pred             HHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-------------------------------
Confidence            7999999999887 68999999999999999999999999887632110                               


Q ss_pred             hhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCC------CCCCccCCc
Q 005991          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN------LSGHVGSPN  469 (666)
Q Consensus       396 ~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~------~~~~vG~p~  469 (666)
                                 .....++|.+++||+++++++.+.+.+.+++++++.||+||++.++........      ..+++|.|+
T Consensus       277 -----------~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~  345 (521)
T PRK06187        277 -----------FVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPL  345 (521)
T ss_pred             -----------ccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccccCCcccccc
Confidence                       000147999999999999999999999889999999999999876665544333      567899999


Q ss_pred             cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 005991          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (666)
Q Consensus       470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik  549 (666)
                      ++++++|+| +++..++.+ ++..|||+++|+.++.||+++++.+.+.| .++||+|||+|+++++|.+++.||.+|+||
T Consensus       346 ~~~~~~i~~-~~~~~~~~~-~g~~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~  422 (521)
T PRK06187        346 PGVEARIVD-DDGDELPPD-GGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDEDGYLYITDRIKDVII  422 (521)
T ss_pred             CCeEEEEEC-CCCCCCCCC-CCCeeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcCCCCEEEeecccceEE
Confidence            999999999 555655551 13489999999999999999999999998 678999999999999999999999999999


Q ss_pred             cCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc------ChhHHHHHHHHcCCCcccccccccCcchh
Q 005991          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV------DPDVLKDWAASQGIKVIYCFSFRANSHVI  620 (666)
Q Consensus       550 l~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~~l~~~~~~~~~~p~~i~  620 (666)
                      + +|.+|+|.+||+++.++++|.+++|++.+++   +.+++++++      ++++++++++++ ++     .+++|..+.
T Consensus       423 ~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l~-----~~~~p~~i~  495 (521)
T PRK06187        423 S-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGR-LA-----KFKLPKRIA  495 (521)
T ss_pred             c-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHh-cc-----CCCCceEEE
Confidence            7 8999999999999999999999999987543   578888885      357889999888 88     899999999


Q ss_pred             HHH-HHHHHhhhhhhhhhccc
Q 005991          621 FIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       621 ~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +++ +|++.+||++|..|++.
T Consensus       496 ~v~~~P~t~~gK~~r~~l~~~  516 (521)
T PRK06187        496 FVDELPRTSVGKILKRVLREQ  516 (521)
T ss_pred             EccCCCCCCCCCeeHHHHHHH
Confidence            985 88888899999998764

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.6e-64  Score=574.75  Aligned_cols=501  Identities=18%  Similarity=0.147  Sum_probs=383.1

Q ss_pred             HHHHHHHHHHhCCCCceEEEEEeccCc--cCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           81 LHDNFIYAVENYPDYKYLGTRVRVDGT--VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        81 l~~~~~~~a~~~pd~~al~~~~~~~~~--~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      ...+|.+.++++||++|+++.   +..  .++.+.+||+||.++++++|++|+++|+++||+|+++++|++|+++++|||
T Consensus       177 ~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~  253 (728)
T PLN03052        177 AECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAI  253 (728)
T ss_pred             HHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            345666666678999999886   321  124578999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH------HHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcE
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL------NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~  232 (666)
                      +++|++++|+++.++++++.+++++++++++|+++...      +...+......  ..++++...........   ...
T Consensus       254 ~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~~~~~---~~~  328 (728)
T PLN03052        254 ILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSVRVKL---REG  328 (728)
T ss_pred             HHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcccccc---ccC
Confidence            99999999999999999999999999999999986432      11111111111  12333322110000000   001


Q ss_pred             EEehHHHHhcCCCC----CCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHH
Q 005991          233 LISYLQLQSQGCSS----PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH  308 (666)
Q Consensus       233 ~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h  308 (666)
                      ..+|++++......    ..+.....++++++|+|||||||.||||+++|++++..+......+++.++|++++++|+.|
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w  408 (728)
T PLN03052        329 DMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGW  408 (728)
T ss_pred             CccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHH
Confidence            24577765433211    11111235689999999999999999999999998776655555578889999999999999


Q ss_pred             HHHHHHHHHHHHhCcEEEEecC--CHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005991          309 IYERANQIVSVYYGVAVGFYQG--DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA  386 (666)
Q Consensus       309 ~~~~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~  386 (666)
                      +++...++.+|..|++++++++  ++..+++.++++++|++.++|+++..|.+...                        
T Consensus       409 ~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~------------------------  464 (728)
T PLN03052        409 MMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNC------------------------  464 (728)
T ss_pred             HhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCC------------------------
Confidence            9998777899999999999974  55789999999999999999999988755200                        


Q ss_pred             HHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC-CccccCcccchhhhhhhccCC-CCCCCCC
Q 005991          387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG-CQVMEGYGMTETSCIISAIDK-GDNLSGH  464 (666)
Q Consensus       387 ~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~-~~~~~~~  464 (666)
                             ..-+|   +        ++||.+++||++++++...++...++ .++.+.||+||+++.+....+ .....++
T Consensus       465 -------~~~~d---l--------ssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~  526 (728)
T PLN03052        465 -------MAGLD---W--------SSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAA  526 (728)
T ss_pred             -------cccCC---h--------hheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCc
Confidence                   00000   0        48999999999999999888777665 579999999999765443322 2345688


Q ss_pred             ccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCC--cCccccCChhhhhhccC------CCCeeecccEEEEecCC
Q 005991          465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPI--VFQGYYKNEVQTREVID------GDGWLHTGDIGLWLPGG  536 (666)
Q Consensus       465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~--v~~GY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG  536 (666)
                      +|.|.+|++++|+| ++++.++.+.+ ..|||+++++.  ...+|+++. .+...|.      +++||+|||+|++|+||
T Consensus       527 ~g~p~~g~~v~v~d-~~g~~v~~g~~-~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG  603 (728)
T PLN03052        527 FSTPAMGCKLFILD-DSGNPYPDDAP-CTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGG  603 (728)
T ss_pred             cccCCCCceEEEEC-CCCCCCCCCCC-ceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCC
Confidence            99999999999999 66776665532 26999998753  345677764 3333331      23499999999999999


Q ss_pred             cEEEEccCCCeEEcCCeeeeccHHHHHHH-hcCcCcceEEEEEeCCC----CeEEEEEEcC--------hhHHHHHHHHc
Q 005991          537 RLKIIDRKKNIFKLAQGEYVAPEKIENVY-AKCKFVLQCFIYGDSFN----SCLVAIVAVD--------PDVLKDWAASQ  603 (666)
Q Consensus       537 ~l~i~GR~~d~ikl~~G~~v~p~eIE~~l-~~~p~V~~~~V~g~~~~----~~~va~vv~~--------~~~l~~~~~~~  603 (666)
                      +++|+||.||+||+ +|+||+|.|||+++ ..||.|.+|+|+|.++.    +.++++|++.        .+++++++++.
T Consensus       604 ~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~  682 (728)
T PLN03052        604 YYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSA  682 (728)
T ss_pred             eEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            99999999999997 89999999999999 58999999999997643    5789999864        25666665433


Q ss_pred             ---CCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          604 ---GIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       604 ---~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                         .++     .+.+|+.|++++ +|+|.+||++|+.|++.
T Consensus       683 i~~~l~-----~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~  718 (728)
T PLN03052        683 IQKKLN-----PLFKVSAVVIVPSFPRTASNKVMRRVLRQQ  718 (728)
T ss_pred             HHhhcC-----CccCCCEEEEcCCCCCCCchHHHHHHHHHH
Confidence               155     788899999995 88999999999999875

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2e-65  Score=567.96  Aligned_cols=467  Identities=21%  Similarity=0.264  Sum_probs=363.3

Q ss_pred             HHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHh
Q 005991           81 LHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSA  160 (666)
Q Consensus        81 l~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~  160 (666)
                      +.+.|+++++++|+++|+.+.   +  .+.++++||+||.++++++|++|.++  ++||+|+|+++|+++|++++|||++
T Consensus         4 ~~~~l~~~~~~~~~~~a~~~~---~--~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~   76 (525)
T PRK05851          4 LAAALSDAMTASGRDLVVLDR---E--SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWL   76 (525)
T ss_pred             HHHHHHHHhcCCCCceEEeCC---C--CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHH
Confidence            789999999999999999754   2  23468899999999999999999988  8999999999999999999999999


Q ss_pred             cCCeEEecCCC--------CCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcE
Q 005991          161 YSYISVPLYDT--------LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (666)
Q Consensus       161 ~G~~~vpl~~~--------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~  232 (666)
                      +|++++ +++.        ...+++.+++++++++++|++......+......       +.+.+.              
T Consensus        77 ~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~~--------------  134 (525)
T PRK05851         77 AGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-------VTVHDL--------------  134 (525)
T ss_pred             cCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-------cccccc--------------
Confidence            999865 4332        2235666789999999999987665444332111       001000              


Q ss_pred             EEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccC-CCcEEEEcCChHHHHH
Q 005991          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY-PSDIYMSYLPLAHIYE  311 (666)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~d~~l~~~pl~h~~~  311 (666)
                          .........  .+.....++++++|+|||||||.||||++||+++.+.+......+++. ++|++++++|++|+++
T Consensus       135 ----~~~~~~~~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g  208 (525)
T PRK05851        135 ----ATAAHTNRS--ASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMG  208 (525)
T ss_pred             ----ccccccccc--ccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCcc
Confidence                000000000  011224678999999999999999999999999999888877778888 8999999999999999


Q ss_pred             HHHHHHHHHhCcEEEEec---C--CHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005991          312 RANQIVSVYYGVAVGFYQ---G--DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA  386 (666)
Q Consensus       312 ~~~~~~~l~~G~~~~~~~---~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~  386 (666)
                      +...+.+++.|+++++.+   +  ++..+++.++++++|++...|.++..+... .....                    
T Consensus       209 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~-~~~~~--------------------  267 (525)
T PRK05851        209 LAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKY-ARRVS--------------------  267 (525)
T ss_pred             HHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHh-hcccc--------------------
Confidence            988888999999999876   2  678899999999999885544444333221 00000                    


Q ss_pred             HHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHH---hCC---ccccCcccchhhhhhhccCCC--
Q 005991          387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC---FGC---QVMEGYGMTETSCIISAIDKG--  458 (666)
Q Consensus       387 ~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~---~~~---~v~~~YG~TE~~~~~~~~~~~--  458 (666)
                                          ....+++|.+++||+++++++.+.|.+.   +|.   .+++.||+||++..++...+.  
T Consensus       268 --------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~  327 (525)
T PRK05851        268 --------------------DVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIG  327 (525)
T ss_pred             --------------------CCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCC
Confidence                                0000379999999999999999988764   454   499999999998655443221  


Q ss_pred             -------------CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeee
Q 005991          459 -------------DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLH  525 (666)
Q Consensus       459 -------------~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~  525 (666)
                                   ....+++|+|++|++++|+|.++...++.+   +.|||+|+|++++.|||++|+.+     .+|||+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g---~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~  399 (525)
T PRK05851        328 LRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGR---EIGEIEIRGASMMSGYLGQAPID-----PDDWFP  399 (525)
T ss_pred             ceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCC---CeEEEEEecCchhhccccCCccC-----CCCcee
Confidence                         123468999999999999995444445544   48999999999999999998643     578999


Q ss_pred             cccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc-----ChhHHH
Q 005991          526 TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV-----DPDVLK  597 (666)
Q Consensus       526 TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~l~  597 (666)
                      |||+|+++ +|.|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.+.++|+.     +.++++
T Consensus       400 TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~  477 (525)
T PRK05851        400 TGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDEAGAR  477 (525)
T ss_pred             ccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecCcchHHHH
Confidence            99999996 8999999999999997 8999999999999999999999999986543   345555542     346677


Q ss_pred             HHHHHcCCCccccccc--ccCcchhHHH---HHHHHhhhhhhhhhcc
Q 005991          598 DWAASQGIKVIYCFSF--RANSHVIFIA---LIHNLCQLYSSKELFR  639 (666)
Q Consensus       598 ~~~~~~~l~~~~~~~~--~~p~~i~~v~---~~~~~~gK~~r~~l~~  639 (666)
                      ++++++ ++     .+  ++|+.+.+++   +|++.+||++|++|++
T Consensus       478 ~~~~~~-l~-----~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~  518 (525)
T PRK05851        478 SEVVQR-VA-----SECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKR  518 (525)
T ss_pred             HHHHHH-HH-----HHhCCCccEEEEECCCCcCcCcchHHHHHHHHH
Confidence            888887 76     44  8999999995   8999999999999975

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-64  Score=557.68  Aligned_cols=479  Identities=21%  Similarity=0.301  Sum_probs=396.6

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      +.++.++|.++++++|+++|+.+.   +      +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVYR---D------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA   71 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEEC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            357899999999999999999764   2      3599999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehH
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (666)
                      |+++|++++|+++.++.+++.++++.+++++++++.+......     .  ....+.++....             ..+.
T Consensus        72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-----~--~~~~~~~~~~~~-------------~~~~  131 (497)
T PRK06145         72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-----L--ETPKIVIDAAAQ-------------ADSR  131 (497)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-----c--ccceEEecCccc-------------chhH
Confidence            9999999999999999999999999999999999876543221     0  111222222100             0111


Q ss_pred             HHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH-HH
Q 005991          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QI  316 (666)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~  316 (666)
                      .+.. ............++++++++|||||||.||||++||+++...+......+++..+|+++..+|++|.+++.. .+
T Consensus       132 ~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  210 (497)
T PRK06145        132 RLAQ-GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGI  210 (497)
T ss_pred             HHhc-cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHH
Confidence            1111 111111222356789999999999999999999999999876665555678889999999999999998866 46


Q ss_pred             HHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCCh
Q 005991          317 VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (666)
Q Consensus       317 ~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (666)
                      .+++.|+++++.+ .++..+++.++++++|++.++|+++..++......                               
T Consensus       211 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~-------------------------------  259 (497)
T PRK06145        211 AVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD-------------------------------  259 (497)
T ss_pred             HHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcc-------------------------------
Confidence            7889999998877 79999999999999999999999998886521000                               


Q ss_pred             hhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCC--CCCCCCccCCccCc
Q 005991          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG--DNLSGHVGSPNPAC  472 (666)
Q Consensus       396 ~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~  472 (666)
                                 ....+++|.+++||+++++++.+.+.+.+ +.++++.||+||++..++.....  ....+++|+|++++
T Consensus       260 -----------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~  328 (497)
T PRK06145        260 -----------RFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHV  328 (497)
T ss_pred             -----------ccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCc
Confidence                       00003799999999999999999998887 68899999999998765543322  23567899999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCC
Q 005991          473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQ  552 (666)
Q Consensus       473 ~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~  552 (666)
                      +++++| +++..++.+.   .|||+++|++++.||+++++.|++.| .++||+|||+|++++||+++++||+||+||+ +
T Consensus       329 ~~~i~~-~~~~~~~~~~---~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~-~  402 (497)
T PRK06145        329 EIRIAD-GAGRWLPPNM---KGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIIS-G  402 (497)
T ss_pred             eEEEEC-CCCCCCCCCC---ceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCcEEEeccccceEEe-C
Confidence            999999 5566665554   89999999999999999999999999 6899999999999999999999999999997 8


Q ss_pred             eeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHHH
Q 005991          553 GEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA  623 (666)
Q Consensus       553 G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~  623 (666)
                      |++|+|.+||+.|.++|+|.+++|++.++.   +.+++++++.      .+++.++++++ ++     .+++|..+.+++
T Consensus       403 G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~-----~~~~p~~i~~v~  476 (497)
T PRK06145        403 GENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQR-LA-----SFKVPRQLKVRD  476 (497)
T ss_pred             CeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHHHHHHh-hh-----cCCCCCEEEEec
Confidence            999999999999999999999999997654   5788888864      46889999998 88     899999999995


Q ss_pred             -HHHHHhhhhhhhhhccc
Q 005991          624 -LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       624 -~~~~~~gK~~r~~l~~~  640 (666)
                       +|++.+||++|++|++.
T Consensus       477 ~iP~t~~GKi~r~~l~~~  494 (497)
T PRK06145        477 ELPRNPSGKVLKRVLRDE  494 (497)
T ss_pred             cCCCCCcccccHHHHHHH
Confidence             78888899999999864

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1.9e-64  Score=561.86  Aligned_cols=488  Identities=20%  Similarity=0.259  Sum_probs=403.2

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      ..++.++|.++++  ||++|+++.   +      +.+||+||.++++++|.+|.+.|+++|++|+++++|+++|+++++|
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la   92 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA   92 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence            3589999998887  999999753   2      3499999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEcccc-----HHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcE
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT-----LNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~  232 (666)
                      |+++|++++++.+....+++..+++++++++++++...     ......+....+.++.++..+...             
T Consensus        93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------  159 (536)
T PRK10946         93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDG-------------  159 (536)
T ss_pred             HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCC-------------
Confidence            99999998888888888899999999999999998643     112222333445566655543210             


Q ss_pred             EEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHH
Q 005991          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER  312 (666)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  312 (666)
                      ...+.++...... ..+.....++++++++|||||||.||||++||+++...+......+++.++|++++.+|++|.+++
T Consensus       160 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~  238 (536)
T PRK10946        160 EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPM  238 (536)
T ss_pred             CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccc
Confidence            1233444433221 112234567999999999999999999999999999998887777888999999999999999887


Q ss_pred             HH--HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005991          313 AN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (666)
Q Consensus       313 ~~--~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (666)
                      ..  .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.........                       
T Consensus       239 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~-----------------------  295 (536)
T PRK10946        239 SSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGS-----------------------  295 (536)
T ss_pred             hhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCc-----------------------
Confidence            64  577899999998876 7899999999999999999999999888764211000                       


Q ss_pred             CCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCC-CCCCCCCccCC
Q 005991          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK-GDNLSGHVGSP  468 (666)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p  468 (666)
                         .              ...+++|.+++||+++++++.+.+.+.+|+++++.||+||++...+.... .....+++|+|
T Consensus       296 ---~--------------~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p  358 (536)
T PRK10946        296 ---R--------------AQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRP  358 (536)
T ss_pred             ---c--------------ccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccccccCCcc
Confidence               0              00148999999999999999999998899999999999997644332211 12345789999


Q ss_pred             c-cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCe
Q 005991          469 N-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNI  547 (666)
Q Consensus       469 ~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~  547 (666)
                      + |+++++|+| ++++.++.++   .|||+++|+.++.|||++++.|++.|+.+|||+|||+|++|++|+++++||.+|+
T Consensus       359 ~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~  434 (536)
T PRK10946        359 MSPDDEVWVAD-ADGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQ  434 (536)
T ss_pred             cCCCceEEEEC-CCCCCCCCCC---ccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccce
Confidence            8 799999999 5666666665   8999999999999999999999999988999999999999999999999999999


Q ss_pred             EEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc----ChhHHHHHHHHcCCCcccccccccCcchh
Q 005991          548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV----DPDVLKDWAASQGIKVIYCFSFRANSHVI  620 (666)
Q Consensus       548 ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~l~~~~~~~~l~~~~~~~~~~p~~i~  620 (666)
                      ||+ +|++|+|.+||+.|.+||+|.+++|++.+++   +.++++|++    +.++++++++++.++     .|++|..+.
T Consensus       435 i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~l~~~~~~~~l~-----~~~~P~~~~  508 (536)
T PRK10946        435 INR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLKAVQLRRFLREQGIA-----EFKLPDRVE  508 (536)
T ss_pred             eec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCCCHHHHHHHHHhCCcc-----ccccCcEEE
Confidence            996 8999999999999999999999999987754   578888885    457889999886587     999999999


Q ss_pred             HHH-HHHHHhhhhhhhhhccc
Q 005991          621 FIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       621 ~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +++ +|.+.+||++|++|++.
T Consensus       509 ~~~~iP~t~~GKv~r~~L~~~  529 (536)
T PRK10946        509 CVDSLPLTAVGKVDKKQLRQW  529 (536)
T ss_pred             EeccCCCCCCCcccHHHHHHH
Confidence            885 88888899999999875

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.4e-65  Score=673.62  Aligned_cols=520  Identities=19%  Similarity=0.216  Sum_probs=430.5

Q ss_pred             hHHHhhHHHHhhccccCCcCCCccccCCCCccccccCCCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHH
Q 005991            4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD   83 (666)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~   83 (666)
                      ..+.++|.++++++.++|+.++++++|.+......                   + ..+..       .++.+...++++
T Consensus      1083 ~~l~~~~~~~l~~~~~~p~~~~~~l~l~~~~~~~~-------------------l-~~~~~-------~~~~~~~~~l~~ 1135 (4334)
T PRK05691       1083 ERLAEHFLALLEQVCEDPQRALGDVQLLDAAERAQ-------------------L-AQWGQ-------APCAPAQAWLPE 1135 (4334)
T ss_pred             HHHHHHHHHHHHHHHhCcccchhhhcCCCHHHHHH-------------------H-HhccC-------CCCCCccCCHHH
Confidence            35788999999999999999999999876442100                   0 00000       001223468999


Q ss_pred             HHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005991           84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (666)
Q Consensus        84 ~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~  163 (666)
                      +|+++++++||++|+.+.   ++      .+||+||+++++++|++|.++|+++|++|+|+++|++++++++|||+++|+
T Consensus      1136 ~~~~~a~~~p~~~Al~~~---~~------~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~ 1206 (4334)
T PRK05691       1136 LLNEQARQTPERIALVWD---GG------SLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGG 1206 (4334)
T ss_pred             HHHHHHHhCCCCeEEEEC---Cc------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence            999999999999999764   33      499999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcC
Q 005991          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQG  243 (666)
Q Consensus       164 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (666)
                      ++|||++.++.+++.++++++++++++++......+..    ..... .+.++...                     ...
T Consensus      1207 ~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~----~~~~~-~~~~~~~~---------------------~~~ 1260 (4334)
T PRK05691       1207 AYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQ----AEGVS-AIALDSLH---------------------LDS 1260 (4334)
T ss_pred             EEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhccc----ccCce-EEeecccc---------------------ccc
Confidence            99999999999999999999999999998765433211    11111 11111110                     000


Q ss_pred             CCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCc
Q 005991          244 CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGV  323 (666)
Q Consensus       244 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~  323 (666)
                      .....+.....+++++|++|||||||.||||+++|+++.+.+.+....+++.++|+++++.|++|+.++..++.+|..|+
T Consensus      1261 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~ 1340 (4334)
T PRK05691       1261 WPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGC 1340 (4334)
T ss_pred             cCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCC
Confidence            00011222346899999999999999999999999999999988888889999999999999999999988999999999


Q ss_pred             EEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhH
Q 005991          324 AVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (666)
Q Consensus       324 ~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (666)
                      ++++.+    .++..+++.++++++|++.++|+++..+......                                    
T Consensus      1341 ~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~------------------------------------ 1384 (4334)
T PRK05691       1341 RLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA------------------------------------ 1384 (4334)
T ss_pred             EEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc------------------------------------
Confidence            999975    5889999999999999999999999887542100                                    


Q ss_pred             HhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccC--CCCCCCCCccCCccCcEEEE
Q 005991          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAID--KGDNLSGHVGSPNPACEIKL  476 (666)
Q Consensus       400 ~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~--~~~~~~~~vG~p~~~~~v~i  476 (666)
                              ...+++|.+++||+++++++.+.|.+.+ +++++|.||+||++..++...  ..+....++|+|++|++++|
T Consensus      1385 --------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i 1456 (4334)
T PRK05691       1385 --------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRV 1456 (4334)
T ss_pred             --------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEE
Confidence                    0014899999999999999999998876 789999999999987665432  22345678999999999999


Q ss_pred             EecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC-------CCCeeecccEEEEecCCcEEEEccCCCeEE
Q 005991          477 VDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID-------GDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (666)
Q Consensus       477 vd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~-------~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik  549 (666)
                      +| ++++.++.|.   .|||+|+|+++++||+++|+.|+++|.       +.+||+|||+|++++||.++|+||+|++||
T Consensus      1457 ~d-~~~~~vp~G~---~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qik 1532 (4334)
T PRK05691       1457 LD-AELNLLPPGV---AGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVK 1532 (4334)
T ss_pred             EC-CCCCCCCCCC---ceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEE
Confidence            99 5667777665   899999999999999999999999983       235999999999999999999999999999


Q ss_pred             cCCeeeeccHHHHHHHhcCcCcceEEEEEeCC--CCeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhH
Q 005991          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF--NSCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIF  621 (666)
Q Consensus       550 l~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~  621 (666)
                      + +|++|+|.|||++|.+||+|.+|+|++...  .+.++|++++.      .++++++++++ ++     .|++|..+++
T Consensus      1533 i-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~~~~~~~l~~~l~~~-Lp-----~y~vP~~~~~ 1605 (4334)
T PRK05691       1533 L-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQEAEAERLKAALAAE-LP-----EYMVPAQLIR 1605 (4334)
T ss_pred             E-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCCCCCHHHHHHHHHHh-Cc-----cccCCcEEEE
Confidence            8 899999999999999999999999987543  36899999863      35899999998 98     9999999999


Q ss_pred             HH-HHHHHhhhhhhhhhccc
Q 005991          622 IA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       622 v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++ +|.+.+||++|++|++.
T Consensus      1606 ~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691       1606 LDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred             ccccCCCCCCCcChhhcCcc
Confidence            85 88888899999999765

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.6e-64  Score=559.22  Aligned_cols=493  Identities=25%  Similarity=0.348  Sum_probs=411.4

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...++.++|...++++||++|+.+.   +      +.+||+||.+++.++|..|.+.|+++|++|+++++|+++++++++
T Consensus         9 ~~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~   79 (523)
T PRK08316          9 RRQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL   79 (523)
T ss_pred             cCCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3578999999999999999999764   3      359999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ||+++|++++|+++.++.+++.++++.+++++++++......+.+.....+. ..+.......      ..........+
T Consensus        80 a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~  152 (523)
T PRK08316         80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPV-DTLILSLVLG------GREAPGGWLDF  152 (523)
T ss_pred             HHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCc-cceeeeeccc------ccccccchhhH
Confidence            9999999999999999999999999999999999998877776655444331 1111111100      00111223455


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH-H
Q 005991          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-Q  315 (666)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~  315 (666)
                      +++....... ........+++++++|||||||.||+|.+||++++..+......+++.++|++++.+|++|.+++.. +
T Consensus       153 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~  231 (523)
T PRK08316        153 ADWAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFL  231 (523)
T ss_pred             HHHHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHH
Confidence            5554433221 1233457889999999999999999999999999988777777778899999999999999999876 4


Q ss_pred             HHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCC
Q 005991          316 IVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPS  394 (666)
Q Consensus       316 ~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~  394 (666)
                      +.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+....                               
T Consensus       232 ~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------------  280 (523)
T PRK08316        232 GPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDF-------------------------------  280 (523)
T ss_pred             HHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc-------------------------------
Confidence            45788999999986 7999999999999999999999999877652100                               


Q ss_pred             hhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCC--CCCCCccCCccC
Q 005991          395 KMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD--NLSGHVGSPNPA  471 (666)
Q Consensus       395 ~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~  471 (666)
                                 +.....++|.+++||++++.++.+.+++.+ ++++++.||+||++.+++.....+  ...+++|+|+++
T Consensus       281 -----------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~  349 (523)
T PRK08316        281 -----------DTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLN  349 (523)
T ss_pred             -----------ccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCC
Confidence                       000114799999999999999999999877 789999999999988766544332  456789999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcC
Q 005991          472 CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA  551 (666)
Q Consensus       472 ~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~  551 (666)
                      ++++|+| +++..++.+.   .|||+++|+.++.||+++++.+++.| .+|||+|||+|++++||.++++||.||+||+ 
T Consensus       350 ~~~~i~~-~~~~~~~~g~---~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~-  423 (523)
T PRK08316        350 VETRVVD-DDGNDVAPGE---VGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKT-  423 (523)
T ss_pred             cEEEEEc-CCCCCCCCCC---cceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEecccccEEEe-
Confidence            9999999 5566666654   89999999999999999999999999 7899999999999999999999999999997 


Q ss_pred             CeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHH
Q 005991          552 QGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFI  622 (666)
Q Consensus       552 ~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v  622 (666)
                      +|++|+|.+||+.+.++++|.+++|++.+++   +.++++++++      .+.+.++++++ ++     .+++|..+.++
T Consensus       424 ~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~-----~~~~p~~i~~v  497 (523)
T PRK08316        424 GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRAR-LA-----GFKVPKRVIFV  497 (523)
T ss_pred             CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHHHHHHHHHHh-cc-----cCCCCcEEEEe
Confidence            8999999999999999999999999997654   5688888864      36788899888 87     89999999988


Q ss_pred             H-HHHHHhhhhhhhhhccc
Q 005991          623 A-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       623 ~-~~~~~~gK~~r~~l~~~  640 (666)
                      + +|++.+||++|++|++.
T Consensus       498 ~~~p~t~~gKi~r~~l~~~  516 (523)
T PRK08316        498 DELPRNPSGKILKRELRER  516 (523)
T ss_pred             cCCCCCCccceeHHHHHHH
Confidence            5 77888899999999775

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.9e-64  Score=559.98  Aligned_cols=501  Identities=25%  Similarity=0.372  Sum_probs=401.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...++.++|...++++|+++|+++.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus        21 ~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~l   91 (557)
T PRK07059         21 QYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIA   91 (557)
T ss_pred             CCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            3568999999999999999999764   3      359999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCC-CCCCC----------
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDE-HLPSL----------  225 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~-~~~~~----------  225 (666)
                      ||+++|++++|+++.++.+++.+++++++++++|++......+.+..... ..+.++....... .....          
T Consensus        92 a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (557)
T PRK07059         92 AVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT-AVKHVVVASMGDLLGFKGHIVNFVVRRVK  170 (557)
T ss_pred             HHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc-CCceeEEeccccccccccccccccccccc
Confidence            99999999999999999999999999999999999877665555443322 2333333221100 00000          


Q ss_pred             ---CCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccccc----cc---C
Q 005991          226 ---PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV----QF---Y  295 (666)
Q Consensus       226 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~----~~---~  295 (666)
                         ..........++++...+...........++++++|+|||||||.||||+++|++++..+......+    ..   .
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~  250 (557)
T PRK07059        171 KMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRP  250 (557)
T ss_pred             ccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCC
Confidence               0000011244555554443322233446789999999999999999999999999987654332211    11   1


Q ss_pred             CCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHH
Q 005991          296 PSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLR  372 (666)
Q Consensus       296 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  372 (666)
                      ..+.+++.+|++|.+++.. .+.++..|++.++.+  .++..+++.++++++|.+.++|+++..+......         
T Consensus       251 ~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~---------  321 (557)
T PRK07059        251 DQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDF---------  321 (557)
T ss_pred             CCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCc---------
Confidence            2457888999999998765 556788888877765  5889999999999999999999999887652100         


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhh
Q 005991          373 EKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCII  452 (666)
Q Consensus       373 ~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~  452 (666)
                                               ....        .+++|.++.||+++++.+.+.|.+.+++++++.||+||++.++
T Consensus       322 -------------------------~~~~--------~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  368 (557)
T PRK07059        322 -------------------------DKLD--------FSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVA  368 (557)
T ss_pred             -------------------------CcCC--------chhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchh
Confidence                                     0000        0378999999999999999999988999999999999998876


Q ss_pred             hccCCCC-CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEE
Q 005991          453 SAIDKGD-NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGL  531 (666)
Q Consensus       453 ~~~~~~~-~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~  531 (666)
                      +...... ...+++|.|+++++++|+| ++++.++.+.   .|||+++|+.++.||+++++.|++.|..+|||+|||+|+
T Consensus       369 ~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~  444 (557)
T PRK07059        369 TCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGE---PGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGV  444 (557)
T ss_pred             hcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCCCCCC---ceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEE
Confidence            6544322 3467899999999999999 5666666665   899999999999999999999999998899999999999


Q ss_pred             EecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC-----hhHHHHHHHHc
Q 005991          532 WLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD-----PDVLKDWAASQ  603 (666)
Q Consensus       532 ~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~~~~~~  603 (666)
                      +++||.++++||++|+||+ +|++|+|.+||+++.+||+|.+++|++.++.   +.++++|+..     .+++.++++++
T Consensus       445 ~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~~~~~~  523 (557)
T PRK07059        445 MDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPALTEEDVKAFCKER  523 (557)
T ss_pred             EcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCCCCHHHHHHHHHHh
Confidence            9999999999999999997 8999999999999999999999999986643   5688888753     47888999988


Q ss_pred             CCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          604 GIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       604 ~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                       ++     .+++|..+.+++ +|++.+||++|++|+..
T Consensus       524 -l~-----~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        524 -LT-----NYKRPKFVEFRTELPKTNVGKILRRELRDG  555 (557)
T ss_pred             -cc-----cccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence             87     899999999995 78888899999998753

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.8e-64  Score=559.32  Aligned_cols=497  Identities=19%  Similarity=0.256  Sum_probs=400.4

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991           75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (666)
Q Consensus        75 ~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  154 (666)
                      .+...++.++|.+.++++|+++|+...   +      +.+||+||.+++.++|++|.+.|+++||+|+++++|+++|+++
T Consensus         6 ~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~   76 (540)
T PRK06164          6 APRADTLASLLDAHARARPDAVALIDE---D------RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVL   76 (540)
T ss_pred             ccCCCCHHHHHHHHHHhCCCCeEEecC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHH
Confidence            345568999999999999999999632   2      3599999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH-----HHHHHhhh-cCCCceEEEEeCCCCCCCCCCCCC
Q 005991          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFIS-EIPSVHLIVVVGGKDEHLPSLPST  228 (666)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~-~~~~l~~ii~~~~~~~~~~~~~~~  228 (666)
                      ++||+++|++++|+++..+.+++.+++++++++++|++.+..     +.+..... ..+.++.++.++........... 
T Consensus        77 ~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  155 (540)
T PRK06164         77 FLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAP-  155 (540)
T ss_pred             HHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCc-
Confidence            999999999999999999999999999999999999986642     22222111 12345555555421111110000 


Q ss_pred             CCcEEEehHHHHhcCCCCCC---CCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCC
Q 005991          229 SGVKLISYLQLQSQGCSSPQ---PFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLP  305 (666)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p  305 (666)
                           ..+.++.........   ......++++++++|||||||.||||++||+++...+......+++.+++++++++|
T Consensus       156 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p  230 (540)
T PRK06164        156 -----GARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALP  230 (540)
T ss_pred             -----ccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCC
Confidence                 011111111000000   012234689999999999999999999999999998888777788899999999999


Q ss_pred             hHHHHHHHHHHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005991          306 LAHIYERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (666)
Q Consensus       306 l~h~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (666)
                      ++|.+++...+.++..|+++++.+ +++..+++.|+++++|+++++|+++..+.+...    ..                
T Consensus       231 ~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~----~~----------------  290 (540)
T PRK06164        231 FCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG----ER----------------  290 (540)
T ss_pred             chhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc----cc----------------
Confidence            999999988889999999999887 799999999999999999999999998876300    00                


Q ss_pred             HHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecC-CCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC---C
Q 005991          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGA-SPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD---N  460 (666)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG-~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~---~  460 (666)
                                             ...++++.+.++| .+.+.++.+++... |+++++.||+||++.+++......   .
T Consensus       291 -----------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~  346 (540)
T PRK06164        291 -----------------------ADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPATDPVSV  346 (540)
T ss_pred             -----------------------CCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCCCCCcc
Confidence                                   0013678776665 66667777777664 899999999999987665543322   2


Q ss_pred             CCCCccCCc-cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEE
Q 005991          461 LSGHVGSPN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK  539 (666)
Q Consensus       461 ~~~~vG~p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~  539 (666)
                      ...+.|.|. ++++++|+|++++..++.++   .|||||+|++++.|||++++.|++.|+.+|||+|||+|+++++|.++
T Consensus       347 ~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~  423 (540)
T PRK06164        347 RIEGGGRPASPEARVRARDPQDGALLPDGE---SGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFV  423 (540)
T ss_pred             eeccCccccCCCeEEEEecCCCCcCCCCCC---eeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEE
Confidence            334578875 89999999977777776665   89999999999999999999999999889999999999999999999


Q ss_pred             EEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCC--CCeEEEEEEcC------hhHHHHHHHHcCCCccccc
Q 005991          540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF--NSCLVAIVAVD------PDVLKDWAASQGIKVIYCF  611 (666)
Q Consensus       540 i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~------~~~l~~~~~~~~l~~~~~~  611 (666)
                      +.||.||+||+ +|++|+|.+||+++.+||+|.+++|++.+.  .+.++++++++      .+++.++++++ ++     
T Consensus       424 ~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~-l~-----  496 (540)
T PRK06164        424 YQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGASPDEAGLMAACREA-LA-----  496 (540)
T ss_pred             EEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCCCCHHHHHHHHHhh-cc-----
Confidence            99999999997 899999999999999999999999998653  35788888863      46889999998 88     


Q ss_pred             ccccCcchhHHH-HHHHHhh---hhhhhhhccc
Q 005991          612 SFRANSHVIFIA-LIHNLCQ---LYSSKELFRS  640 (666)
Q Consensus       612 ~~~~p~~i~~v~-~~~~~~g---K~~r~~l~~~  640 (666)
                      .+++|..+.+++ +|.+.+|   |++|++|++.
T Consensus       497 ~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~  529 (540)
T PRK06164        497 GFKVPARVQVVEAFPVTESANGAKIQKHRLREM  529 (540)
T ss_pred             cCcCCcEEEEecCCCCCCCCccccccHHHHHHH
Confidence            899999999996 7777778   9999999775

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.5e-64  Score=612.83  Aligned_cols=497  Identities=24%  Similarity=0.297  Sum_probs=405.2

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      +...++.++|.+.++++||++|+.+.   ++     +.+||+||.++++++|++|.+ ++++||+|+++++|++++++++
T Consensus       612 ~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~  682 (1146)
T PRK08633        612 EALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALAN  682 (1146)
T ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHH
Confidence            45688999999999999999999642   22     359999999999999999987 5899999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhh--hcCCCceEEEEeCCCCCCCCCCCCCCCcEE
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI--SEIPSVHLIVVVGGKDEHLPSLPSTSGVKL  233 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~  233 (666)
                      +||+++|++++|+++.++.+++.+++++++++++++++...+.+.+..  ...+....++..++......        ..
T Consensus       683 la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  754 (1146)
T PRK08633        683 LALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKIS--------KV  754 (1146)
T ss_pred             HHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccc--------hh
Confidence            999999999999999999999999999999999999987665543211  01223334444433211000        00


Q ss_pred             EehHHHHhcCCCC-----CCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHH
Q 005991          234 ISYLQLQSQGCSS-----PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAH  308 (666)
Q Consensus       234 ~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h  308 (666)
                      ..+.+........     ........++|+++++|||||||.||||++||+++.+.+......+++.++|++++.+|++|
T Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h  834 (1146)
T PRK08633        755 DKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH  834 (1146)
T ss_pred             HHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHH
Confidence            1122211110000     00013456899999999999999999999999999998887777788899999999999999


Q ss_pred             HHHHHH-HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 005991          309 IYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ  385 (666)
Q Consensus       309 ~~~~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~  385 (666)
                      .+++.. .+.++..|+++++.+  .++..+++.++++++|++.++|++++.+.+....                      
T Consensus       835 ~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------  892 (1146)
T PRK08633        835 SFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKL----------------------  892 (1146)
T ss_pred             HHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhcccc----------------------
Confidence            999887 678899999998876  6899999999999999999999999877652100                      


Q ss_pred             HHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-------
Q 005991          386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-------  458 (666)
Q Consensus       386 ~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-------  458 (666)
                                          .+...+++|.+++||+++++++.+.+++.+|+++++.||+||++++++...+.       
T Consensus       893 --------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  952 (1146)
T PRK08633        893 --------------------HPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK  952 (1146)
T ss_pred             --------------------CcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCcccccccc
Confidence                                00001489999999999999999999998999999999999998766544321       


Q ss_pred             ---CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCC---CCeeecccEEEE
Q 005991          459 ---DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG---DGWLHTGDIGLW  532 (666)
Q Consensus       459 ---~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~---~gw~~TGDlg~~  532 (666)
                         ....+++|+|+||++++|+|+++++.++.++   .|||+++|++++.||+++|+.|++.+.+   +|||+|||+|++
T Consensus       953 ~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~ 1029 (1146)
T PRK08633        953 RQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGE---DGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029 (1146)
T ss_pred             cccCCCCCCccccCCCCEEEEEcCCCCccCCCCC---ceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEE
Confidence               1346789999999999999977777777665   8999999999999999999999998832   399999999999


Q ss_pred             ecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCc--CcceEEEEEeCCC---CeEEEEEEc---ChhHHHHHHHHcC
Q 005991          533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCK--FVLQCFIYGDSFN---SCLVAIVAV---DPDVLKDWAASQG  604 (666)
Q Consensus       533 ~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p--~V~~~~V~g~~~~---~~~va~vv~---~~~~l~~~~~~~~  604 (666)
                      |+||+++++||.||+||+ +|++|+|.|||+++.+||  .+.+|+|++.+++   +.+++++++   +.++++++++++.
T Consensus      1030 ~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~l~~~~~~~~ 1108 (1146)
T PRK08633       1030 DEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAEDVEELKRAIKESG 1108 (1146)
T ss_pred             cCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCccCHHHHHHHHHhcC
Confidence            999999999999999997 899999999999999999  5678999987764   578888875   4567888887655


Q ss_pred             CCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          605 IKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       605 l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++     .|++|..+++++ +|++.+||++|++|++.
T Consensus      1109 l~-----~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~ 1140 (1146)
T PRK08633       1109 LP-----NLWKPSRYFKVEALPLLGSGKLDLKGLKEL 1140 (1146)
T ss_pred             CC-----cccCCcEEEEecCcCCCCCCCCcHHHHHHH
Confidence            87     999999999996 77888899999999875

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=6.5e-64  Score=561.08  Aligned_cols=502  Identities=21%  Similarity=0.264  Sum_probs=395.3

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .|++..|...++.+|+++|+.+.   .      ..+||+||.++++++|.+|.+.|+++||+|+++++|+++|+++++||
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~   90 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHG---S------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV   90 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence            46899999999999999999753   1      35899999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCC-------CceEEEEeCCCCCCCCCCCCCCCc
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIP-------SVHLIVVVGGKDEHLPSLPSTSGV  231 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~l~~ii~~~~~~~~~~~~~~~~~~  231 (666)
                      +++|++++|+++.++.+++.+++++++++++|+++...+...+....+.       ....++.++...............
T Consensus        91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (567)
T PLN02479         91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK  170 (567)
T ss_pred             HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence            9999999999999999999999999999999999877655544332211       112344443211110000000111


Q ss_pred             EEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHH
Q 005991          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYE  311 (666)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~  311 (666)
                      ....|.+++...............+++++++|||||||.||||++||+++..........+++..++++++.+|++|.++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~  250 (567)
T PLN02479        171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNG  250 (567)
T ss_pred             CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhh
Confidence            23456666654322111112234457788999999999999999999998766655555567888999999999999999


Q ss_pred             HHHHH-HHHHhCcEEEEecCCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005991          312 RANQI-VSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (666)
Q Consensus       312 ~~~~~-~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (666)
                      +...+ ..+..|.++++..+++..+++.++++++|++.++|+++..|.+.....                          
T Consensus       251 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------  304 (567)
T PLN02479        251 WCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSE--------------------------  304 (567)
T ss_pred             HHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhc--------------------------
Confidence            87654 356677777666689999999999999999999999999886531100                          


Q ss_pred             CCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCC---------CC--
Q 005991          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK---------GD--  459 (666)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~---------~~--  459 (666)
                          ..           ...++++.++++|+++++++.++|++. ++++++.||+||+++.++....         ..  
T Consensus       305 ----~~-----------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~  368 (567)
T PLN02479        305 ----TI-----------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQA  368 (567)
T ss_pred             ----cc-----------ccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceeccccccccCccccc
Confidence                00           001478999999999999999998874 8999999999998654332210         00  


Q ss_pred             CCCCCccCCccCcE-EEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcE
Q 005991          460 NLSGHVGSPNPACE-IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRL  538 (666)
Q Consensus       460 ~~~~~vG~p~~~~~-v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l  538 (666)
                      ....++|.+.++++ ++|+|.+++..++.+. ++.|||+++|++++.|||++|+.|++.| .+|||+|||+|++|++|++
T Consensus       369 ~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g-~~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l  446 (567)
T PLN02479        369 RLNARQGVRYIGLEGLDVVDTKTMKPVPADG-KTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYI  446 (567)
T ss_pred             ccccccCCCcCCcCceeEEcCCCCcccCCCC-CCceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCccE
Confidence            11245788888876 8899866666655431 1379999999999999999999999999 6899999999999999999


Q ss_pred             EEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh-----------hHHHHHHHHcC
Q 005991          539 KIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP-----------DVLKDWAASQG  604 (666)
Q Consensus       539 ~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-----------~~l~~~~~~~~  604 (666)
                      +|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.+++   +.+++++++.+           +++.++++++ 
T Consensus       447 ~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~-  524 (567)
T PLN02479        447 EIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRER-  524 (567)
T ss_pred             EEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhh-
Confidence            999999999996 8999999999999999999999999997653   57889888642           4678888888 


Q ss_pred             CCcccccccccCcchhHHHHHHHHhhhhhhhhhccc
Q 005991          605 IKVIYCFSFRANSHVIFIALIHNLCQLYSSKELFRS  640 (666)
Q Consensus       605 l~~~~~~~~~~p~~i~~v~~~~~~~gK~~r~~l~~~  640 (666)
                      ++     .|+.|+.+.+.++|.+.+||++|++|++.
T Consensus       525 l~-----~~~~P~~~~~~~iP~t~~gKv~r~~L~~~  555 (567)
T PLN02479        525 LP-----AYWVPKSVVFGPLPKTATGKIQKHVLRAK  555 (567)
T ss_pred             cc-----cccCCceEEeccCCCCCccCeeHHHHHHH
Confidence            88     99999998887888888999999999765

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-63  Score=555.52  Aligned_cols=498  Identities=20%  Similarity=0.268  Sum_probs=404.7

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      ..|+.++|+.+++++||+++++..  .+   ++.+.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus         9 ~~~~~~~~~~~a~~~~~~~~~~~~--~~---~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la   83 (542)
T PRK06018          9 PLLCHRIIDHAARIHGNREVVTRS--VE---GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYG   83 (542)
T ss_pred             CCCHHHHHHHHHHhCCCceEEEee--cc---CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHH
Confidence            358999999999999999999743  12   2356799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehH
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (666)
                      |+++|++++|+++.++.+++.++++.+++++++++....+.+.+.....+.++.++...+... ...   ........|.
T Consensus        84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~  159 (542)
T PRK06018         84 IMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAH-MPQ---TTLKNAVAYE  159 (542)
T ss_pred             HHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEeccccc-ccc---cCccccccHH
Confidence            999999999999999999999999999999999998888777776666666666665543211 000   0111234566


Q ss_pred             HHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHH-HH-HhhcccccccCCCcEEEEcCChHHHHHHHHH
Q 005991          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLI-SN-VAGFSLMVQFYPSDIYMSYLPLAHIYERANQ  315 (666)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~-~~-~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~  315 (666)
                      ++...... ........++++++|+|||||||.||||++||++.+ +. .......+++..+|+++..+|++|.+++...
T Consensus       160 ~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~  238 (542)
T PRK06018        160 EWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIA  238 (542)
T ss_pred             HHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHH
Confidence            66543321 111233467889999999999999999999999743 22 2233445678899999999999999998877


Q ss_pred             HHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005991          316 IVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (666)
Q Consensus       316 ~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (666)
                      +.++..|+++++..  .++..+++.++++++|++.++|+++..+.........                           
T Consensus       239 ~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~---------------------------  291 (542)
T PRK06018        239 FSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGL---------------------------  291 (542)
T ss_pred             HhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCC---------------------------
Confidence            88899999998864  6889999999999999999999999888653211000                           


Q ss_pred             ChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC-----------CCC
Q 005991          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-----------NLS  462 (666)
Q Consensus       394 ~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----------~~~  462 (666)
                                     ..+++|.+++||+++++++.++|++ +++++++.||+||++.+.+......           ...
T Consensus       292 ---------------~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (542)
T PRK06018        292 ---------------KLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVL  355 (542)
T ss_pred             ---------------CcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCCchhhhhcc
Confidence                           0037999999999999999999999 8999999999999987655432111           123


Q ss_pred             CCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 005991          463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID  542 (666)
Q Consensus       463 ~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G  542 (666)
                      .++|+|.++++++|+| +++..++.+. +..|||+++|++++.|||++   +.+.++.+|||+|||+|+++++|++++.|
T Consensus       356 ~~~G~~~~g~~i~v~d-~~~~~~~~~~-~~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~G  430 (542)
T PRK06018        356 QKQGYPPFGVEMKITD-DAGKELPWDG-KTFGRLKVRGPAVAAAYYRV---DGEILDDDGFFDTGDVATIDAYGYMRITD  430 (542)
T ss_pred             ccCCCCCCCcEEEEEC-CCCCCCCCCC-CceeEEEEecCCcchhhhcC---cccEecCCcEEEcCCEEEEcCCccEEEEe
Confidence            5789999999999999 4555554321 13799999999999999983   34556679999999999999999999999


Q ss_pred             cCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCccccccc
Q 005991          543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSF  613 (666)
Q Consensus       543 R~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~  613 (666)
                      |.+|+||+ +|++|+|.+||+++.+||+|.+|+|++.++.   +.++++|++.      .+++.++++++ ++     .+
T Consensus       431 R~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~-----~~  503 (542)
T PRK06018        431 RSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGK-IA-----KW  503 (542)
T ss_pred             cCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCCHHHHHHHHHhh-Cc-----cc
Confidence            99999996 8999999999999999999999999997653   5677777753      46889999998 88     89


Q ss_pred             ccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          614 RANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       614 ~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++|..+.+++ +|++.+||++|++|++.
T Consensus       504 ~~P~~i~~v~~iP~t~~GKi~r~~L~~~  531 (542)
T PRK06018        504 WMPDDVAFVDAIPHTATGKILKTALREQ  531 (542)
T ss_pred             cCCcEEEEeccCCCCCcchhhHHHHHHH
Confidence            9999999995 88888899999999875

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-63  Score=553.84  Aligned_cols=489  Identities=20%  Similarity=0.268  Sum_probs=390.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHhHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ...++.++|.+.+.  +|++|+.+.   +      +++||.||.++++++|++|.++ |+++|++|+++++|+++|++++
T Consensus         3 ~~~~~~~~l~~~a~--~~~~a~~~~---~------~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~   71 (529)
T PRK07867          3 SAPTVAELLLPLAE--DDDRGLYFE---D------SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL   71 (529)
T ss_pred             ccccHHHHHHHhcc--cCCceEEEC---C------cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence            45678999988775  788998653   2      4699999999999999999997 8999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (666)
                      +||+++|++++|+++.++.+++.+++++++++++|+++.....+....   +.+.. +..+.                ..
T Consensus        72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~-~~~~~----------------~~  131 (529)
T PRK07867         72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---PGVRV-INVDS----------------PA  131 (529)
T ss_pred             HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---cCceE-EEecc----------------cc
Confidence            999999999999999999999999999999999999987665544332   22222 22211                12


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH-
Q 005991          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-  314 (666)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-  314 (666)
                      |.+++..............++++++|+|||||||.||||++||+++..........+++..+|++++.+|++|.+++.. 
T Consensus       132 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~  211 (529)
T PRK07867        132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAG  211 (529)
T ss_pred             HHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHH
Confidence            3333322211112223457799999999999999999999999999888887777788899999999999999999877 


Q ss_pred             HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005991          315 QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (666)
Q Consensus       315 ~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (666)
                      .+.++..|+++++.+ .++..+++.++++++|++.++|+.+..++.....                             .
T Consensus       212 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~-----------------------------~  262 (529)
T PRK07867        212 WAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPER-----------------------------P  262 (529)
T ss_pred             HHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc-----------------------------c
Confidence            446788999998876 7899999999999999999999998876542100                             0


Q ss_pred             ChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcE
Q 005991          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACE  473 (666)
Q Consensus       394 ~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~  473 (666)
                       .            ....++|. ++||+++++.+ ..+.+.+|+++++.||+||++..++...  ....+++|.|+++  
T Consensus       263 -~------------~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~--~~~~~~~g~~~~~--  323 (529)
T PRK07867        263 -D------------DADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTP--DTPPGALGPLPPG--  323 (529)
T ss_pred             -c------------ccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCC--CCCCCCcCCCCCC--
Confidence             0            00136774 56888888775 5566678999999999999986544322  2345789999999  


Q ss_pred             EEEEecCCCCCCCCCC---------CCCccEEEE-eCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 005991          474 IKLVDVPEMNYTSEDQ---------PHPRGEICV-RGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR  543 (666)
Q Consensus       474 v~ivd~~~~~~~~~~~---------~~~~GEl~v-~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR  543 (666)
                      ++++|.+++..++.+.         .+..|||++ +|++++.||+++++.|.+.| .+|||+|||+|+++++|+++|+||
T Consensus       324 ~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR  402 (529)
T PRK07867        324 VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGR  402 (529)
T ss_pred             EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEeeccEEEEeCCCcEEEecc
Confidence            7778855555554432         011799999 99999999999999999999 689999999999999999999999


Q ss_pred             CCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc------ChhHHHHHHHHc-CCCccccccc
Q 005991          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV------DPDVLKDWAASQ-GIKVIYCFSF  613 (666)
Q Consensus       544 ~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~-~l~~~~~~~~  613 (666)
                      .||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++   +.++++|++      ++++++++++++ .++     .+
T Consensus       403 ~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~~l~-----~~  476 (529)
T PRK07867        403 LGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLG-----PK  476 (529)
T ss_pred             ccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCHHHHHHHHHhhccCC-----cc
Confidence            9999997 8999999999999999999999999998754   578888775      356888888763 366     89


Q ss_pred             ccCcchhHHH-HHHHHhhhhhhhhhccchhhhhcCCCcccee
Q 005991          614 RANSHVIFIA-LIHNLCQLYSSKELFRSRCCYRTGRDSSVFC  654 (666)
Q Consensus       614 ~~p~~i~~v~-~~~~~~gK~~r~~l~~~~~~~~~~~~~~~~~  654 (666)
                      ++|..+.+++ +|++.+||++|++|++..   +.+.+...|.
T Consensus       477 ~~P~~i~~~~~iP~t~~GKv~r~~L~~~~---~~~~~~~~~~  515 (529)
T PRK07867        477 QWPSYVRVCAELPRTATFKVLKRQLSAEG---VDCADPVWWI  515 (529)
T ss_pred             cCCeEEEEeeccCCCCCcceeHHHHHHhc---CCCCCCeeeh
Confidence            9999999985 788888999999998752   3344444443

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.5e-63  Score=551.83  Aligned_cols=487  Identities=22%  Similarity=0.306  Sum_probs=407.5

Q ss_pred             CCCHHHHHHHH-HHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           78 IGTLHDNFIYA-VENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        78 ~~tl~~~~~~~-a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      .+...+++.+. ++.+||++|+...   +      ..+||.||.++++++|++|.+.|+++|++|+++++|+++|+++++
T Consensus         3 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~   73 (508)
T TIGR02262         3 YNAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL   73 (508)
T ss_pred             chHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            35567888876 6779999999643   2      359999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ||+++|++++|+++.++.+++.++++.+++++++++....+.+.+....++.++.++..+....           ....+
T Consensus        74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~  142 (508)
T TIGR02262        74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEA-----------GEVQL  142 (508)
T ss_pred             HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCc-----------ccccH
Confidence            9999999999999999999999999999999999998887777776667777777776644210           11234


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhh-cccccccCCCcEEEEcCChHHHHHHHH-
Q 005991          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAG-FSLMVQFYPSDIYMSYLPLAHIYERAN-  314 (666)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~pl~h~~~~~~-  314 (666)
                      .++...... ........++++++++|||||||.||||++||+++...+.. ....+++.++|++++.+|++|.+++.. 
T Consensus       143 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~  221 (508)
T TIGR02262       143 AELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNA  221 (508)
T ss_pred             HHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHH
Confidence            444332221 11223345789999999999999999999999999887765 344567889999999999999999866 


Q ss_pred             HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991          315 QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (666)
Q Consensus       315 ~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (666)
                      ++.++..|+++++.+  .++..+++.|++++||++.++|.++..+.....                              
T Consensus       222 ~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~------------------------------  271 (508)
T TIGR02262       222 LTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPN------------------------------  271 (508)
T ss_pred             HHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcc------------------------------
Confidence            556789999998876  589999999999999999999998876653100                              


Q ss_pred             CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCc
Q 005991          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPAC  472 (666)
Q Consensus       393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~  472 (666)
                                  .+.....++|.+++||+++++++.+.|.+.+|+++++.||+||++...+.....+...+++|.|++++
T Consensus       272 ------------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~  339 (508)
T TIGR02262       272 ------------LPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGY  339 (508)
T ss_pred             ------------ccccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCCCCCCcCCCCCCc
Confidence                        00001248999999999999999999999899999999999999876554444444567899999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCC
Q 005991          473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQ  552 (666)
Q Consensus       473 ~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~  552 (666)
                      +++|+| +++..++.+.   .|||+++|++++.||+++++.+++.| .++||+|||+++++++|.++++||.||+||+ +
T Consensus       340 ~v~i~d-~~~~~~~~g~---~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~-~  413 (508)
T TIGR02262       340 RLRLVG-DGGQDVAAGE---PGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKV-S  413 (508)
T ss_pred             EEEEEC-CCCCCCCCCC---eeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccEEEeccccceeee-C
Confidence            999999 7777776665   89999999999999999999999988 6899999999999999999999999999998 7


Q ss_pred             eeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC---------hhHHHHHHHHcCCCcccccccccCcchh
Q 005991          553 GEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD---------PDVLKDWAASQGIKVIYCFSFRANSHVI  620 (666)
Q Consensus       553 G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~---------~~~l~~~~~~~~l~~~~~~~~~~p~~i~  620 (666)
                      |++|+|.+||+.+.++|+|.++++++.++.   +.+++++++.         .++++++++++ ++     .+++|..+.
T Consensus       414 G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~-l~-----~~~~p~~i~  487 (508)
T TIGR02262       414 GIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDR-LA-----PYKYPRWIV  487 (508)
T ss_pred             CEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHh-cc-----cCCCCceEE
Confidence            999999999999999999999999996543   4677888752         35778888888 88     899999998


Q ss_pred             HHH-HHHHHhhhhhhhhhcc
Q 005991          621 FIA-LIHNLCQLYSSKELFR  639 (666)
Q Consensus       621 ~v~-~~~~~~gK~~r~~l~~  639 (666)
                      +++ +|++.+||++|++|++
T Consensus       488 ~~~~iP~t~~gKi~r~~l~~  507 (508)
T TIGR02262       488 FVDDLPKTATGKIQRFKLRE  507 (508)
T ss_pred             EecCCCCCCCCcEehhhccC
Confidence            884 7888889999999876

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.9e-64  Score=556.38  Aligned_cols=490  Identities=21%  Similarity=0.277  Sum_probs=386.3

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCCHhHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGL-QKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv-~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      .|+.++|..++  .|+++|+.+.   +      ..+||.||.++++++|.+|.+.|+ ++||+|+++++|+++|+++++|
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~---~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA   71 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG---D------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA   71 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence            47888887754  7999999753   2      259999999999999999999999 7999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehH
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (666)
                      |+++|++++|+++.++.+++.+++++++++++|++......+.+..  .+.++.++ ++..                .+.
T Consensus        72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~i~-~~~~----------------~~~  132 (540)
T PRK13388         72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LPGVRVLD-VDTP----------------AYA  132 (540)
T ss_pred             HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--ccCceEEE-ccch----------------hhh
Confidence            9999999999999999999999999999999999877665544321  23333332 2210                122


Q ss_pred             HHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHH-
Q 005991          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI-  316 (666)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~-  316 (666)
                      +++..... ..+.....++++++++|||||||.||||+++|+++...+......+++.++|++++.+|++|.+++...+ 
T Consensus       133 ~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~  211 (540)
T PRK13388        133 ELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWA  211 (540)
T ss_pred             hhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHH
Confidence            22221111 1122235679999999999999999999999999998887777778899999999999999999887744 


Q ss_pred             HHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCCh
Q 005991          317 VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (666)
Q Consensus       317 ~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (666)
                      .++..|+++++.+ .++..+++.++++++|++..+|..+..+......                             + .
T Consensus       212 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~-----------------------------~-~  261 (540)
T PRK13388        212 PAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPER-----------------------------P-D  261 (540)
T ss_pred             HHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC-----------------------------c-c
Confidence            5789999998877 7899999999999999999999998776542000                             0 0


Q ss_pred             hhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEE
Q 005991          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIK  475 (666)
Q Consensus       396 ~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~  475 (666)
                                  ....+++.+ + |++++++....+.+.+++++++.||+||++.+++..  .....+++|+|++|+++ 
T Consensus       262 ------------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~--~~~~~~~vG~p~~g~~i-  324 (540)
T PRK13388        262 ------------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVRE--PGTPPGSIGRGAPGVAI-  324 (540)
T ss_pred             ------------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecC--CCCCCCCCCCCCCCcEE-
Confidence                        000256643 3 556678888888888899999999999998655432  23456789999999765 


Q ss_pred             EEecCCCCCCCC------C----CCCCccEEEEe-CCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC
Q 005991          476 LVDVPEMNYTSE------D----QPHPRGEICVR-GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK  544 (666)
Q Consensus       476 ivd~~~~~~~~~------~----~~~~~GEl~v~-g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~  544 (666)
                       ++.++...++.      +    .++..|||+++ |++++.||+++|+.|++.| .+|||+|||+|++|+||+++++||+
T Consensus       325 -~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~  402 (540)
T PRK13388        325 -YNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRT  402 (540)
T ss_pred             -EcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEeccC
Confidence             33222111110      0    12248999998 9999999999999999999 6899999999999999999999999


Q ss_pred             CCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHc-CCCcccccccc
Q 005991          545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQ-GIKVIYCFSFR  614 (666)
Q Consensus       545 ~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~-~l~~~~~~~~~  614 (666)
                      ||+||+ +|++|+|.+||+++.+||+|.+|+|++.+++   +.+++++++.      .++++++++.+ .++     .++
T Consensus       403 ~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~l~~~~~l~-----~~~  476 (540)
T PRK13388        403 ADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLG-----TKA  476 (540)
T ss_pred             CceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCCHHHHHHHHHhhccCC-----ccc
Confidence            999997 8999999999999999999999999997654   4667777643      45788888754 366     899


Q ss_pred             cCcchhHHH-HHHHHhhhhhhhhhccchhhhhcCCCccceehh
Q 005991          615 ANSHVIFIA-LIHNLCQLYSSKELFRSRCCYRTGRDSSVFCQE  656 (666)
Q Consensus       615 ~p~~i~~v~-~~~~~~gK~~r~~l~~~~~~~~~~~~~~~~~~~  656 (666)
                      +|..+.+++ +|++.+||++|++|++..  .-.++...+|++.
T Consensus       477 ~P~~~~~v~~iP~t~~GKv~R~~L~~~~--~~~~~~~~~~~~~  517 (540)
T PRK13388        477 WPRYVRIAADLPSTATNKVLKRELIAQG--WATGDPVTLWVRR  517 (540)
T ss_pred             CCcEEEEeccCCCCCcceeeHHhHHHhc--cCCCCCceEEEcC
Confidence            999999885 888888999999998753  3344555666655

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-63  Score=553.82  Aligned_cols=486  Identities=25%  Similarity=0.334  Sum_probs=403.9

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      ..|+.++|.++++++|+++|+.+.   +      +.+||.||.++++++|..|.+.|+++|++|+++++|+++|+++++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la   81 (524)
T PRK06188         11 GATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGA   81 (524)
T ss_pred             CccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            458999999999999999999763   2      3599999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccc-cHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ-TLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      |+++|++++|+++.++.+++.++++.++++.+++++. ....+.+.....+.+..++.++.....            ...
T Consensus        82 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~  149 (524)
T PRK06188         82 AQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDG------------VDL  149 (524)
T ss_pred             HHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccch------------hhH
Confidence            9999999999999999999999999999999999876 444444444445555555554432100            011


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHH
Q 005991          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI  316 (666)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~  316 (666)
                      .+....... ........++++++|+|||||||.||+|++||.++.+.+......+++..+|++++.+|++|.+++. .+
T Consensus       150 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~  227 (524)
T PRK06188        150 LAAAAKFGP-APLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FL  227 (524)
T ss_pred             HHhhhccCc-ccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HH
Confidence            111110000 0111123456799999999999999999999999999888877778889999999999999998874 56


Q ss_pred             HHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCCh
Q 005991          317 VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (666)
Q Consensus       317 ~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (666)
                      .+++.|+++++.+ .++..+++.++++++|++.++|+++..+.+.....                               
T Consensus       228 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~-------------------------------  276 (524)
T PRK06188        228 PTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR-------------------------------  276 (524)
T ss_pred             HHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc-------------------------------
Confidence            7789999999987 78999999999999999999999998886531000                               


Q ss_pred             hhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC------CCCCCccCCc
Q 005991          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD------NLSGHVGSPN  469 (666)
Q Consensus       396 ~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~------~~~~~vG~p~  469 (666)
                                 .....++|.+++||++++++....+.+.+++.+++.||+||++..++......      ...+++|+|+
T Consensus       277 -----------~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~  345 (524)
T PRK06188        277 -----------TRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPT  345 (524)
T ss_pred             -----------CCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccccCCcccccc
Confidence                       00014899999999999999988888888999999999999976555433221      3457899999


Q ss_pred             cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 005991          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (666)
Q Consensus       470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik  549 (666)
                      ++++++|+| +++..++.+.   .|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++||.+++.||.+|+||
T Consensus       346 ~g~~v~i~~-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~  420 (524)
T PRK06188        346 PGLRVALLD-EDGREVAQGE---VGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMIV  420 (524)
T ss_pred             CCcEEEEEc-CCCCCCCCCC---eeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcCCccEEEEecccccee
Confidence            999999999 4566666554   89999999999999999999999998 789999999999999999999999999999


Q ss_pred             cCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchh
Q 005991          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVI  620 (666)
Q Consensus       550 l~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~  620 (666)
                      + +|++|+|.+||++|.+|++|.+++|++.+++   +.++++++++      .++++++++++ ++     .+++|..|+
T Consensus       421 ~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~-----~~~~p~~i~  493 (524)
T PRK06188        421 T-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKER-KG-----SVHAPKQVD  493 (524)
T ss_pred             c-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHh-cc-----cCCCCcEEE
Confidence            7 8999999999999999999999999997654   5788888863      36889999988 87     899999999


Q ss_pred             HHH-HHHHHhhhhhhhhhccc
Q 005991          621 FIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       621 ~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +++ +|++.+||++|++|++.
T Consensus       494 ~v~~~P~t~~gKi~r~~L~~~  514 (524)
T PRK06188        494 FVDSLPLTALGKPDKKALRAR  514 (524)
T ss_pred             EecCCCCCccccccHHHHHHH
Confidence            995 88888899999998765

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-63  Score=549.76  Aligned_cols=463  Identities=21%  Similarity=0.295  Sum_probs=379.1

Q ss_pred             HHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeE
Q 005991           86 IYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYIS  165 (666)
Q Consensus        86 ~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  165 (666)
                      +.+++.+||++|+.+.  .++     ..+||+||.++++++|.+|.+.|+++|++|+++++|+++|+++++||+++|+++
T Consensus         2 ~~~a~~~p~~~a~~~~--~~~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   74 (488)
T PRK09088          2 AFHARLQPQRLAAVDL--ALG-----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY   74 (488)
T ss_pred             chhhhhCCCceEEEec--CCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            3567889999998652  011     459999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCC
Q 005991          166 VPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCS  245 (666)
Q Consensus       166 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (666)
                      +|+++.++.+++.+++++++++++|+++.....      ..    ..                     +.++++......
T Consensus        75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~------~~----~~---------------------~~~~~~~~~~~~  123 (488)
T PRK09088         75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAG------RT----DV---------------------EDLAAFIASADA  123 (488)
T ss_pred             EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcc------cc----cc---------------------cchhhhhhhccc
Confidence            999999999999999999999999997643210      00    00                     111111111000


Q ss_pred             -CCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH-HHHHHHhCc
Q 005991          246 -SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYYGV  323 (666)
Q Consensus       246 -~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~  323 (666)
                       .........++++++++|||||||.||+|.+||+++...+..+.....+..+|++++.+|++|.+++.. ++.++..|+
T Consensus       124 ~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~  203 (488)
T PRK09088        124 LEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGG  203 (488)
T ss_pred             cccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCC
Confidence             011112345688999999999999999999999999887776666667788999999999999999887 456788899


Q ss_pred             EEEEec-CCHHHHHHHHH--hhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHH
Q 005991          324 AVGFYQ-GDNLKLMDDLA--VLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL  400 (666)
Q Consensus       324 ~~~~~~-~~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~  400 (666)
                      ++++.+ .++..++..+.  ++++|+++++|+++..+.+....                                  +. 
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~----------------------------------~~-  248 (488)
T PRK09088        204 SILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGF----------------------------------DA-  248 (488)
T ss_pred             EEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCc----------------------------------Cc-
Confidence            998876 68888888886  48899999999999877542000                                  00 


Q ss_pred             hhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCC---CCCCCCCccCCccCcEEEEE
Q 005991          401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK---GDNLSGHVGSPNPACEIKLV  477 (666)
Q Consensus       401 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~---~~~~~~~vG~p~~~~~v~iv  477 (666)
                             ...+++|.+++||++++.+..+.+... |+++++.||+||++........   .....+++|.|.|+++++|+
T Consensus       249 -------~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~  320 (488)
T PRK09088        249 -------AALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVV  320 (488)
T ss_pred             -------cccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEE
Confidence                   001379999999999999988877753 8999999999999865432211   12356789999999999999


Q ss_pred             ecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeec
Q 005991          478 DVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVA  557 (666)
Q Consensus       478 d~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~  557 (666)
                      | +++..++.+.   .|||+|+|++++.||+++++.|++.|+.+|||+|||+|+++++|.++|.||.||+||+ +|++|+
T Consensus       321 d-~~~~~~~~g~---~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~  395 (488)
T PRK09088        321 D-DQGNDCPAGV---PGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFIS-GGENVY  395 (488)
T ss_pred             C-CCCCCCcCCC---ceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEe-CCEEEC
Confidence            9 5566665554   8999999999999999999999999988999999999999999999999999999997 899999


Q ss_pred             cHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHHH-HHHH
Q 005991          558 PEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHN  627 (666)
Q Consensus       558 p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~  627 (666)
                      |.+||++|.++|+|.+++|++.+++   +..+++|+++      .+++.++++++ ++     .+++|..|.+++ +|++
T Consensus       396 ~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~-----~~~~p~~i~~~~~iP~t  469 (488)
T PRK09088        396 PAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTR-LA-----KYKVPKHLRLVDALPRT  469 (488)
T ss_pred             HHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHHhh-Cc-----CCCCCCEEEEcccCCCC
Confidence            9999999999999999999997653   5677888763      46788999988 87     899999999995 7778


Q ss_pred             Hhhhhhhhhhccc
Q 005991          628 LCQLYSSKELFRS  640 (666)
Q Consensus       628 ~~gK~~r~~l~~~  640 (666)
                      .+||++|++|++.
T Consensus       470 ~~gKi~r~~l~~~  482 (488)
T PRK09088        470 ASGKLQKARLRDA  482 (488)
T ss_pred             CCCceeHHHHHHH
Confidence            7899999999875

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-63  Score=561.87  Aligned_cols=490  Identities=22%  Similarity=0.296  Sum_probs=386.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...|+.++|.+.++++||++|+++.   +      +.+||+||.++++++|.+|.+.|+++|++|+++++|+++|+++++
T Consensus        35 ~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~l  105 (600)
T PRK08279         35 SKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWL  105 (600)
T ss_pred             CcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4568999999999999999999864   3      349999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+..........++..++....          ....+
T Consensus       106 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~  175 (600)
T PRK08279        106 GLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLD----------DPEGY  175 (600)
T ss_pred             HHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCcccc----------ccccH
Confidence            99999999999999999999999999999999999988777766655444433333333321100          01233


Q ss_pred             HHHHhcCCCC----CCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHH
Q 005991          237 LQLQSQGCSS----PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER  312 (666)
Q Consensus       237 ~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  312 (666)
                      .++.......    ........++++++|+|||||||.||||++||+++.+.+.+....+++.++|++++.+|++|.+++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~  255 (600)
T PRK08279        176 EDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGG  255 (600)
T ss_pred             HHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhH
Confidence            4443222111    111233467899999999999999999999999999999888777889999999999999999999


Q ss_pred             HHHH-HHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005991          313 ANQI-VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (666)
Q Consensus       313 ~~~~-~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (666)
                      ...+ .++..|+++++.+ +++..+++.++++++|++.++|+++..+.......                          
T Consensus       256 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~--------------------------  309 (600)
T PRK08279        256 TVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKP--------------------------  309 (600)
T ss_pred             HHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCc--------------------------
Confidence            8754 5677888888876 79999999999999999999999988776421000                          


Q ss_pred             CCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCC-ccccCcccchhhhhhhccCCCCCCCCCccCCc
Q 005991          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGHVGSPN  469 (666)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~  469 (666)
                         .             ....++|.+  +|+++++++.+.|.+.++. .+++.||+||++..++..   ....+++|.+.
T Consensus       310 ---~-------------~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~~~~~~g~~~  368 (600)
T PRK08279        310 ---T-------------DRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV---FNFDGTVGRVP  368 (600)
T ss_pred             ---c-------------ccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc---CCCCccccccc
Confidence               0             000356654  4777999999999988876 599999999987533221   23456778766


Q ss_pred             c----CcEEEEEecCCCC-------CCCCCCCCCccEEE--EeCCCcCccccCChhhhhhcc------CCCCeeecccEE
Q 005991          470 P----ACEIKLVDVPEMN-------YTSEDQPHPRGEIC--VRGPIVFQGYYKNEVQTREVI------DGDGWLHTGDIG  530 (666)
Q Consensus       470 ~----~~~v~ivd~~~~~-------~~~~~~~~~~GEl~--v~g~~v~~GY~~~~~~t~~~~------~~~gw~~TGDlg  530 (666)
                      +    +..+...+.+.+.       ......+++.|||+  ++|++++.|| ++++.|++.|      +.++||+|||+|
T Consensus       369 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg  447 (600)
T PRK08279        369 LWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLM  447 (600)
T ss_pred             ccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceE
Confidence            6    4433322211111       11112334589998  7899999999 9999998876      246899999999


Q ss_pred             EEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC----CeEEEEEE-c-----ChhHHHHHH
Q 005991          531 LWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN----SCLVAIVA-V-----DPDVLKDWA  600 (666)
Q Consensus       531 ~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~----~~~va~vv-~-----~~~~l~~~~  600 (666)
                      ++++||.|++.||.||+||+ +|++|+|.|||+++.+||+|.+|+|+|.++.    ...+++|+ .     +.+++++++
T Consensus       448 ~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l  526 (600)
T PRK08279        448 RDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHL  526 (600)
T ss_pred             EEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCHHHHHHHH
Confidence            99999999999999999997 8999999999999999999999999986532    33444444 3     347899999


Q ss_pred             HHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          601 ASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       601 ~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +++ |+     .|++|..+++++ +|++.+||++|++|++.
T Consensus       527 ~~~-L~-----~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~  561 (600)
T PRK08279        527 YER-LP-----AYAVPLFVRLVPELETTGTFKYRKVDLRKE  561 (600)
T ss_pred             Hhh-Cc-----cccCCeEEEeecCCCCCcchhhhHHHHhhc
Confidence            998 98     999999999995 88888899999999887

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.2e-62  Score=548.49  Aligned_cols=498  Identities=26%  Similarity=0.350  Sum_probs=395.1

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...++.++|.+.++.+|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+++|++|+++++|+++|+++++
T Consensus        19 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l   89 (541)
T TIGR03205        19 ARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFF   89 (541)
T ss_pred             CCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            4568999999999999999999753   2      359999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEcccc--HHHHHHhhhcCCCceEEEEeCCCCCCCCCC--C-CCCCc
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT--LNTLLSFISEIPSVHLIVVVGGKDEHLPSL--P-STSGV  231 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~--~-~~~~~  231 (666)
                      ||+++|++++|+++.++.+++.+++++++++.+|+++..  ...+.+.... ..+..+++.+.........  . .....
T Consensus        90 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (541)
T TIGR03205        90 GALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWGKVGTPQAPIPADP  168 (541)
T ss_pred             HHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccccccccccccCCCc
Confidence            999999999999999999999999999999999997531  1222222111 1133444443321000000  0 00112


Q ss_pred             EEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc-----ccccCCCcEEEEcCCh
Q 005991          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL-----MVQFYPSDIYMSYLPL  306 (666)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~pl  306 (666)
                      ...+++++...... ........++++++++|||||||.||||+++|+++.........     .......+++++.+|+
T Consensus       169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~  247 (541)
T TIGR03205       169 RIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPL  247 (541)
T ss_pred             ccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccH
Confidence            24556666653322 12223456789999999999999999999999998765542211     1122345799999999


Q ss_pred             HHHHHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005991          307 AHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (666)
Q Consensus       307 ~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (666)
                      +|.+++.. .+.++..|+++++.. .++..+++.|+++++|++.++|+++..+.+...  .                   
T Consensus       248 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~-------------------  306 (541)
T TIGR03205       248 FHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS--L-------------------  306 (541)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc--c-------------------
Confidence            99998876 567889999988877 799999999999999999999999987754100  0                   


Q ss_pred             HHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-CCCCC
Q 005991          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSG  463 (666)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~  463 (666)
                                           ......++|.+++||+++++++.+++.+.++.++++.||+||++..++..... ....+
T Consensus       307 ---------------------~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~  365 (541)
T TIGR03205       307 ---------------------EKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPG  365 (541)
T ss_pred             ---------------------cccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCCCCCC
Confidence                                 00001379999999999999999999988899999999999998766554332 24567


Q ss_pred             CccCCccCcEEEEEecC-CCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 005991          464 HVGSPNPACEIKLVDVP-EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID  542 (666)
Q Consensus       464 ~vG~p~~~~~v~ivd~~-~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G  542 (666)
                      ++|.|+++++++|++.+ +++.++.+   +.|||+++|++++.||+++|+.|++.| .++||+|||+|+++++|+++++|
T Consensus       366 ~~G~~~~~~~~~v~~~d~~~~~~~~g---~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~G  441 (541)
T TIGR03205       366 SIGLMLPGIELDVVSLDDPTKVLPPG---EVGELRIRGPNVTRGYWNRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLVD  441 (541)
T ss_pred             CcceeccCceeEEEecCCCCccCCCC---CeeEEEEecCCccccccCChhhhHhhh-ccCCcccCceEEEcCCceEEEEc
Confidence            89999999999987643 34444444   489999999999999999999999998 58899999999999999999999


Q ss_pred             cCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC-------hhHHHHHHHHcCCCcccccc
Q 005991          543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD-------PDVLKDWAASQGIKVIYCFS  612 (666)
Q Consensus       543 R~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-------~~~l~~~~~~~~l~~~~~~~  612 (666)
                      |.||+||+ +|++|+|.+||+++.+|++|.+++|++.+++   +.++++++++       .+++.++++++ ++     .
T Consensus       442 R~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~-l~-----~  514 (541)
T TIGR03205       442 RKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGK-LG-----K  514 (541)
T ss_pred             cccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcCCHHHHHHHHHhh-cc-----c
Confidence            99999996 8999999999999999999999999987643   5688888753       46788899988 87     8


Q ss_pred             cccCcchhHHH-HHHHHhhhhhhhhhc
Q 005991          613 FRANSHVIFIA-LIHNLCQLYSSKELF  638 (666)
Q Consensus       613 ~~~p~~i~~v~-~~~~~~gK~~r~~l~  638 (666)
                      |++|+.|.+++ +|.+.+||++|++|+
T Consensus       515 ~~~P~~i~~~~~iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       515 HELPVAVEFVDELPRTPVGKLSRHELR  541 (541)
T ss_pred             ccCCcEEEEeccCCCCcccceeHhhcC
Confidence            99999999995 777878999999874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=3.9e-63  Score=554.96  Aligned_cols=500  Identities=25%  Similarity=0.364  Sum_probs=401.0

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL-FHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ..++.++|.++++++|+++|+++.   +      +.+||+||.++++++|..|. +.|+++|++|+++++|+++++++++
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   94 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF---G------KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF   94 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC---C------ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999999753   2      35999999999999999997 6899999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCC-CC-------------
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDE-HL-------------  222 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~-~~-------------  222 (666)
                      ||+++|++++|++|.++.+++.+++++++++++++++.....+.......+ ...++..+.... ..             
T Consensus        95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (560)
T PRK08751         95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-VKQVITTGLGDMLGFPKAALVNFVVKYV  173 (560)
T ss_pred             HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-ccEEEEechhhhcccccchhhhhhhhhh
Confidence            999999999999999999999999999999999999877666655544443 233333221000 00             


Q ss_pred             CC-CCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccc----cCC-
Q 005991          223 PS-LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ----FYP-  296 (666)
Q Consensus       223 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~----~~~-  296 (666)
                      .. ...........+.+....+.....+.....++++++++|||||||.||||++||+++...+......+.    +.+ 
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~  253 (560)
T PRK08751        174 KKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEG  253 (560)
T ss_pred             hccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCC
Confidence            00 000000112345555444332222333456799999999999999999999999999887765444332    333 


Q ss_pred             CcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHH
Q 005991          297 SDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE  373 (666)
Q Consensus       297 ~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  373 (666)
                      .+++++.+|++|.+++.. .+.++..|++.++..  .++..+++.++++++|++.++|.++..+.+...           
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----------  322 (560)
T PRK08751        254 CEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG-----------  322 (560)
T ss_pred             CceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC-----------
Confidence            367788999999999865 456677787776654  689999999999999999999999987765200           


Q ss_pred             HHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhh
Q 005991          374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIIS  453 (666)
Q Consensus       374 ~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~  453 (666)
                                             .+...+        +++|.+++||+++++++.+.|++.+|+++++.||+||++..++
T Consensus       323 -----------------------~~~~~l--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  371 (560)
T PRK08751        323 -----------------------FDQIDF--------SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAAC  371 (560)
T ss_pred             -----------------------cCCcch--------hhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCcee
Confidence                                   000001        3799999999999999999999988999999999999987655


Q ss_pred             ccCCC-CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEE
Q 005991          454 AIDKG-DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLW  532 (666)
Q Consensus       454 ~~~~~-~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~  532 (666)
                      ..... ....+++|.|+++++++++| +++..++.+.   .|||+++|+.++.||+++++.|++.|+.+|||+|||+|++
T Consensus       372 ~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~  447 (560)
T PRK08751        372 INPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGE---IGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARM  447 (560)
T ss_pred             cccccccccCCCcCccCCCceEEEEC-CCCCCCCCCC---ceEEEEecCccchhhcCChhhhhhccccCCCccccceEEE
Confidence            43322 24457899999999999999 6667666665   8999999999999999999999999988999999999999


Q ss_pred             ecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc-----ChhHHHHHHHHcC
Q 005991          533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV-----DPDVLKDWAASQG  604 (666)
Q Consensus       533 ~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~l~~~~~~~~  604 (666)
                      +++|.+++.||.+|+||+ +|++|+|.+||+++..||+|.+|+|++.++.   +.++++++.     +.++++++++++ 
T Consensus       448 ~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~~~~~~-  525 (560)
T PRK08751        448 DEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPALTAEDVKAHARAN-  525 (560)
T ss_pred             cCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCCCCHHHHHHHHHHh-
Confidence            999999999999999997 8999999999999999999999999997654   466777764     346888999988 


Q ss_pred             CCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          605 IKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       605 l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++     .+++|..+.+++ +|++.+||++|++|++.
T Consensus       526 l~-----~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~  557 (560)
T PRK08751        526 LT-----GYKQPRIIEFRKELPKTNVGKILRRELRDA  557 (560)
T ss_pred             hh-----hccCCeEEEEhhhCCCCccccccHHHHHHh
Confidence            88     999999999996 88888899999999865

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-63  Score=544.30  Aligned_cols=449  Identities=23%  Similarity=0.319  Sum_probs=375.6

Q ss_pred             HHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEe
Q 005991           88 AVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVP  167 (666)
Q Consensus        88 ~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vp  167 (666)
                      .+.+.++++|+.+.   +      +.+||+||.++++++|..|.     ++|+|+++++|+++|+++++||+++|++++|
T Consensus         9 ~~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~   74 (471)
T PRK07787          9 VAAAADIADAVRIG---G------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVP   74 (471)
T ss_pred             hhcccCCceEEEeC---C------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEee
Confidence            34566788998653   2      35999999999999999996     4799999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCCCC
Q 005991          168 LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSP  247 (666)
Q Consensus       168 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (666)
                      +++.++.+++.+++++++++.++++....      ...++.+...  ...                .++           
T Consensus        75 l~~~~~~~~l~~~l~~~~~~~il~~~~~~------~~~~~~~~~~--~~~----------------~~~-----------  119 (471)
T PRK07787         75 VPPDSGVAERRHILADSGAQAWLGPAPDD------PAGLPHVPVR--LHA----------------RSW-----------  119 (471)
T ss_pred             cCCCCChHHHHHHHHhcCCCEEEecCCcc------cccccceeee--ccc----------------ccc-----------
Confidence            99999999999999999999999976311      0111111100  000                000           


Q ss_pred             CCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH-HHHHHHhCcEEE
Q 005991          248 QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVG  326 (666)
Q Consensus       248 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~  326 (666)
                      .......++++++++|||||||.||||++||+++...+......+++.++|++++.+|++|.+++.. ++.++..|++++
T Consensus       120 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~  199 (471)
T PRK07787        120 HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFV  199 (471)
T ss_pred             ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEE
Confidence            0111245789999999999999999999999999998887777788889999999999999999886 678899999998


Q ss_pred             Eec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHH
Q 005991          327 FYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI  405 (666)
Q Consensus       327 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~  405 (666)
                      +.+ .++..+++.++ +++|++.++|+++..+.+....                                          
T Consensus       200 ~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~------------------------------------------  236 (471)
T PRK07787        200 HTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA------------------------------------------  236 (471)
T ss_pred             ecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc------------------------------------------
Confidence            877 79999999999 9999999999999887652000                                          


Q ss_pred             HHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCC
Q 005991          406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT  485 (666)
Q Consensus       406 ~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~  485 (666)
                      .. ...++|.+++||+++++++.++|.+.++.++++.||+||++...+.........+++|+|+++++++|+|. ++..+
T Consensus       237 ~~-~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~-~~~~~  314 (471)
T PRK07787        237 AR-ALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDE-DGGPV  314 (471)
T ss_pred             cc-cccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCCcccCCcccccCCCcEEEEECC-CCCCC
Confidence            00 01479999999999999999999998999999999999998655444333445678999999999999994 45544


Q ss_pred             CC-CCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC-CCeEEcCCeeeeccHHHHH
Q 005991          486 SE-DQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK-KNIFKLAQGEYVAPEKIEN  563 (666)
Q Consensus       486 ~~-~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~-~d~ikl~~G~~v~p~eIE~  563 (666)
                      +. ++  ..|||+++|++++.||+++++.|++.|..+|||+|||+|++++||+++++||+ ||++|. +|++|+|.+||+
T Consensus       315 ~~~~~--~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v~~~eIE~  391 (471)
T PRK07787        315 PHDGE--TVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRIGAGEIET  391 (471)
T ss_pred             CCCCC--CceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEECHHHHHH
Confidence            42 21  37999999999999999999999999988999999999999999999999996 899996 899999999999


Q ss_pred             HHhcCcCcceEEEEEeCCC---CeEEEEEEc----ChhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhh
Q 005991          564 VYAKCKFVLQCFIYGDSFN---SCLVAIVAV----DPDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSK  635 (666)
Q Consensus       564 ~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~  635 (666)
                      ++.++|.|.+++|++.++.   +.++++|++    +++++.++++++ ++     .+++|..+.+++ +|++.+||++|+
T Consensus       392 ~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~l~~~-l~-----~~~~P~~i~~~~~iP~~~~GKi~r~  465 (471)
T PRK07787        392 ALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDVAADELIDFVAQQ-LS-----VHKRPREVRFVDALPRNAMGKVLKK  465 (471)
T ss_pred             HHHhCCCcceEEEEcccccccCeEEEEEEEeCCCCCHHHHHHHHHhh-cc-----cccCCcEEEEeccCCCCCCccccHH
Confidence            9999999999999997654   578999886    567899999988 88     899999999885 888888999999


Q ss_pred             hhcc
Q 005991          636 ELFR  639 (666)
Q Consensus       636 ~l~~  639 (666)
                      +|++
T Consensus       466 ~L~~  469 (471)
T PRK07787        466 QLLS  469 (471)
T ss_pred             Hhcc
Confidence            9976

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.6e-63  Score=551.93  Aligned_cols=500  Identities=23%  Similarity=0.348  Sum_probs=393.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ..+++.++|...+..+|+++|+.+.   +      +.+||+||.+++.++|++|.+.|+++||+|+++++|+++++++++
T Consensus        22 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   92 (563)
T PRK06710         22 DIQPLHKYVEQMASRYPEKKALHFL---G------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY   92 (563)
T ss_pred             CcccHHHHHHHHHHHCCCceEEEec---C------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            3468999999999999999999764   2      359999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCC-CCCCC-----CCCC--
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKD-EHLPS-----LPST--  228 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~-~~~~~-----~~~~--  228 (666)
                      ||+++|++++|++|.++.+++.++++.++++++++++.....+...... .....++...... ...+.     ....  
T Consensus        93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (563)
T PRK06710         93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA-TKIEHVIVTRIADFLPFPKNLLYPFVQKKQ  171 (563)
T ss_pred             HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh-hccceeEEeccccccccccccccchhhccc
Confidence            9999999999999999999999999999999999987655444332211 1122222211000 00000     0000  


Q ss_pred             --------CCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc-ccccC-CCc
Q 005991          229 --------SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL-MVQFY-PSD  298 (666)
Q Consensus       229 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~~~-~~d  298 (666)
                              .......|..+.... ..........++++++++|||||||.||||.+||+++......... .++.. .++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~  250 (563)
T PRK06710        172 SNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEE  250 (563)
T ss_pred             ccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCc
Confidence                    000000122221111 1011111123578999999999999999999999998755432222 23333 356


Q ss_pred             EEEEcCChHHHHHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHH
Q 005991          299 IYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLF  376 (666)
Q Consensus       299 ~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~  376 (666)
                      ++++.+|++|.+++.. .+.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+.......            
T Consensus       251 ~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------  318 (563)
T PRK06710        251 VVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLK------------  318 (563)
T ss_pred             eEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccc------------
Confidence            8899999999999876 456888999998876 69999999999999999999999998876421000            


Q ss_pred             HHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccC
Q 005991          377 TAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAID  456 (666)
Q Consensus       377 ~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~  456 (666)
                                         ..+           .+++|.+++||+++++++.+++++.+++++++.||+||++..+....
T Consensus       319 -------------------~~~-----------~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  368 (563)
T PRK06710        319 -------------------EYD-----------ISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNF  368 (563)
T ss_pred             -------------------cCC-----------hhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCc
Confidence                               000           03789999999999999999999988999999999999987554332


Q ss_pred             C-CCCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecC
Q 005991          457 K-GDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG  535 (666)
Q Consensus       457 ~-~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d  535 (666)
                      . .....+++|+|.++++++++|++++..++.+.   .|||+++|+.++.||+++++.|...| .+|||+|||+|+++++
T Consensus       369 ~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~  444 (563)
T PRK06710        369 LWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGE---IGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDED  444 (563)
T ss_pred             ccccccCCccCCCCCCCeEEEEECCCCccCCCCC---ceEEEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcCC
Confidence            2 22345789999999999999977777676665   89999999999999999999999988 6899999999999999


Q ss_pred             CcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc------ChhHHHHHHHHcCCC
Q 005991          536 GRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV------DPDVLKDWAASQGIK  606 (666)
Q Consensus       536 G~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~~l~  606 (666)
                      |.++++||.||+||+ +|++|+|.+||+++.+||.|.+++|++.++.   +.++++|++      +.++++++++++ ++
T Consensus       445 g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~  522 (563)
T PRK06710        445 GFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKY-LA  522 (563)
T ss_pred             CcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCCHHHHHHHHHHh-cc
Confidence            999999999999997 8999999999999999999999999997653   578888875      356888999988 88


Q ss_pred             cccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          607 VIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       607 ~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                           .+++|..+.+++ +|.+.+||++|++|++.
T Consensus       523 -----~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~  552 (563)
T PRK06710        523 -----AYKVPKVYEFRDELPKTTVGKILRRVLIEE  552 (563)
T ss_pred             -----cccCCcEEEEcccCCCCccchhhHHHHHHH
Confidence                 999999999996 88888899999999764

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.3e-62  Score=542.99  Aligned_cols=469  Identities=19%  Similarity=0.226  Sum_probs=381.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...++.+.|.++++++||++|+.+.   ++      .+||+||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~~------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l  103 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIIDD---DG------ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF  103 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEeC---CC------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3468999999999999999999753   22      49999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ||+++|++++|+++.++.+++.+++++++++.+++++...+.+.....      .++.++...                 
T Consensus       104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~------~~~~~~~~~-----------------  160 (516)
T PRK13383        104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD------AVAVIDPAT-----------------  160 (516)
T ss_pred             HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc------ceEEeccch-----------------
Confidence            999999999999999999999999999999999998876655443211      122222110                 


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHH--HHhhcccccccCCCcEEEEcCChHHHHHHHH
Q 005991          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS--NVAGFSLMVQFYPSDIYMSYLPLAHIYERAN  314 (666)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (666)
                      .....      ....+...++.++|+|||||||.||||++||.....  ........+++.++|++++.+|++|.+++..
T Consensus       161 ~~~~~------~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~  234 (516)
T PRK13383        161 AGAEE------SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGM  234 (516)
T ss_pred             hhhhc------CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHH
Confidence            00000      001112345678999999999999999999984321  1112223456788999999999999999988


Q ss_pred             HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005991          315 QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (666)
Q Consensus       315 ~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (666)
                      .+.++..|+++++.. .++..+++.++++++|.+.++|.++..+........ .                          
T Consensus       235 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~--------------------------  287 (516)
T PRK13383        235 LMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR-A--------------------------  287 (516)
T ss_pred             HHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc-c--------------------------
Confidence            888899999998776 799999999999999999999999988765211000 0                          


Q ss_pred             ChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-CCCCCCccCCccCc
Q 005991          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPAC  472 (666)
Q Consensus       394 ~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~  472 (666)
                                   ....+++|.+++||+++++++.+.|.+.+++.+++.||+||++..+...... ....+++|+|++++
T Consensus       288 -------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~  354 (516)
T PRK13383        288 -------------RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGC  354 (516)
T ss_pred             -------------cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcccCCCCCc
Confidence                         0001479999999999999999999999999999999999998654433221 23467899999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCC
Q 005991          473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQ  552 (666)
Q Consensus       473 ~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~  552 (666)
                      +++|+| ++++.++.+   +.|||+++|+.++.||++++.   +.+ .+|||+|||+|++|++|+++++||.||+||+ +
T Consensus       355 ~~~i~d-~~~~~~~~g---~~Gel~v~g~~~~~~Y~~~~~---~~~-~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~-~  425 (516)
T PRK13383        355 PVRILD-RNNRPVGPR---VTGRIFVGGELAGTRYTDGGG---KAV-VDGMTSTGDMGYLDNAGRLFIVGREDDMIIS-G  425 (516)
T ss_pred             EEEEEC-CCCCCCCCC---CceEEEEecCcccccccCCch---hhe-ecCceecceeEEEcCCccEEEeccccceEEE-C
Confidence            999999 555655555   489999999999999998764   223 5899999999999999999999999999997 8


Q ss_pred             eeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHHH
Q 005991          553 GEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA  623 (666)
Q Consensus       553 G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~  623 (666)
                      |++|+|.+||++|.+||.|.+++|++.++.   +.++++|+++      .++++++++++ ++     .+++|..+.+++
T Consensus       426 G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~-----~~~~p~~i~~v~  499 (516)
T PRK13383        426 GENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDR-VS-----RFEQPRDINIVS  499 (516)
T ss_pred             CEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHHh-cc-----cCCCCcEEEEeC
Confidence            999999999999999999999999996643   5788888863      46889999988 87     899999999995


Q ss_pred             -HHHHHhhhhhhhhhc
Q 005991          624 -LIHNLCQLYSSKELF  638 (666)
Q Consensus       624 -~~~~~~gK~~r~~l~  638 (666)
                       +|++.+||++|++|+
T Consensus       500 ~iP~t~~gKi~r~~L~  515 (516)
T PRK13383        500 SIPRNPTGKVLRKELP  515 (516)
T ss_pred             CCCCCCCCcCcHHHhC
Confidence             777778999999874

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.6e-62  Score=548.97  Aligned_cols=498  Identities=23%  Similarity=0.329  Sum_probs=396.3

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .++.++|...++.+||++|+.+.   +      +.+||.||.+++.++|.+|.++|+++|++|+++++|+++|+++++||
T Consensus        33 ~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~  103 (567)
T PRK06178         33 RPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGI  103 (567)
T ss_pred             ccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHH
Confidence            68999999999999999999764   3      35999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCC--CCCC--CCC---CCCc
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDE--HLPS--LPS---TSGV  231 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~--~~~~--~~~---~~~~  231 (666)
                      +++|++++|++|.++.+++.+++++++++++++++...+.+.+..... .++.++..+..+.  ....  ...   ....
T Consensus       104 ~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (567)
T PRK06178        104 LKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPAEPTLPLPDSLRAPRL  182 (567)
T ss_pred             HHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-CcceEEEeccccccccccccccccccccccc
Confidence            999999999999999999999999999999999988877776655443 3444444332110  0000  000   0000


Q ss_pred             EEEehHHHHhcCCC--CCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc-ccccCCCcEEEEcCChHH
Q 005991          232 KLISYLQLQSQGCS--SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL-MVQFYPSDIYMSYLPLAH  308 (666)
Q Consensus       232 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~d~~l~~~pl~h  308 (666)
                      ....+.++......  .........++++++|+|||||||.||||++||++++..+..... ...+..+|++++++|++|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~  262 (567)
T PRK06178        183 AAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFW  262 (567)
T ss_pred             cccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHH
Confidence            00112222221111  111123356799999999999999999999999998876554432 256788999999999999


Q ss_pred             HHHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005991          309 IYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA  386 (666)
Q Consensus       309 ~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~  386 (666)
                      .+++.. ++.+++.|+++++.+ .++..++..++++++|.+.++|..+..+.....  .                     
T Consensus       263 ~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~--~---------------------  319 (567)
T PRK06178        263 IAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR--F---------------------  319 (567)
T ss_pred             HHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC--C---------------------
Confidence            999865 677899999999988 799999999999999999999998877654200  0                     


Q ss_pred             HHcCCCCChhhhHHhhHHHHHHhCCceEEEE--ecCCCCcHHHHHHHHHHhCCcccc-CcccchhhhhhhccCC---C--
Q 005991          387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMG--SGASPLSPDVMDFLKVCFGCQVME-GYGMTETSCIISAIDK---G--  458 (666)
Q Consensus       387 ~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~--~gG~~l~~~~~~~~~~~~~~~v~~-~YG~TE~~~~~~~~~~---~--  458 (666)
                                 ....+        .+++.+.  ++++++++++.+.|++.+|..++. .||+||++..++....   .  
T Consensus       320 -----------~~~~l--------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~  380 (567)
T PRK06178        320 -----------AEYDL--------SSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDF  380 (567)
T ss_pred             -----------CCCCc--------chheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCcc
Confidence                       00000        2455543  456999999999999988877775 7999998765443221   1  


Q ss_pred             --CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCC
Q 005991          459 --DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGG  536 (666)
Q Consensus       459 --~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG  536 (666)
                        ...++++|+|+||++++|+|+++++.++.++   .|||+++|++++.|||++++.+++.| .+|||+|||+|++++||
T Consensus       381 ~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~---~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~g  456 (567)
T PRK06178        381 DLLSQPVFVGLPVPGTEFKICDFETGELLPLGA---EGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQG  456 (567)
T ss_pred             ccccCCcccccccCCcEEEEEcCCCCCcCCCCC---ceEEEEECCcccccccCChhhhhhcc-cCCceeecceEEEecCC
Confidence              1345679999999999999977777777665   89999999999999999999999988 68999999999999999


Q ss_pred             cEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc------ChhHHHHHHHHcCCCc
Q 005991          537 RLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV------DPDVLKDWAASQGIKV  607 (666)
Q Consensus       537 ~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~~l~~  607 (666)
                      +++|+||++|+||+ +|++|+|.+||+++.++|+|.+++|++.+++   +.++++|++      ++++++++++++ ++ 
T Consensus       457 ~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~-  533 (567)
T PRK06178        457 FLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAWCREN-MA-  533 (567)
T ss_pred             eEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCCHHHHHHHHHhc-Cc-
Confidence            99999999999997 8999999999999999999999999987643   578888886      356889999988 88 


Q ss_pred             ccccccccCcchhHH-HHHHHHhhhhhhhhhccc
Q 005991          608 IYCFSFRANSHVIFI-ALIHNLCQLYSSKELFRS  640 (666)
Q Consensus       608 ~~~~~~~~p~~i~~v-~~~~~~~gK~~r~~l~~~  640 (666)
                          .+++|. +.++ ++|++.+||++|++|++.
T Consensus       534 ----~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~  562 (567)
T PRK06178        534 ----VYKVPE-IRIVDALPMTATGKVRKQDLQAL  562 (567)
T ss_pred             ----ccCCce-EEEeccCCCCCccceeHHHHHHH
Confidence                899997 6666 488888899999999865

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=8e-63  Score=545.45  Aligned_cols=471  Identities=18%  Similarity=0.217  Sum_probs=387.2

Q ss_pred             CHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005991           80 TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS  159 (666)
Q Consensus        80 tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~  159 (666)
                      ++.+.|.+.++.+|+++|+...   +      +.+||+||.+++.++|..|.+.|+++|++|+++++|+.+|+++++||+
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~   71 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI   71 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence            4788999999999999999653   2      359999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHH
Q 005991          160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL  239 (666)
Q Consensus       160 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (666)
                      ++|++++|+++.++.+++.++++.++++.++++........       ... ++.++.                  ...+
T Consensus        72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-------~~~-~~~~~~------------------~~~~  125 (502)
T TIGR01734        72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAV-------GTQ-IITLSA------------------LEQA  125 (502)
T ss_pred             HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEeccccccccc-------CCc-eEEchH------------------hhhh
Confidence            99999999999999999999999999999999875432211       111 111110                  1111


Q ss_pred             HhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHH
Q 005991          240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSV  319 (666)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l  319 (666)
                      ...... ........+++.++++|||||||.||||+++|+++.+.+.+....+++..++++++.+|++|.+++...+.++
T Consensus       126 ~~~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l  204 (502)
T TIGR01734       126 ETSGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCL  204 (502)
T ss_pred             hhhcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHH
Confidence            111111 1111234678999999999999999999999999998888777778888999999999999999998888999


Q ss_pred             HhCcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCCh
Q 005991          320 YYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (666)
Q Consensus       320 ~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (666)
                      ..|+++++.+    .++..+++.++++++|.+.++|.++..++.....                                
T Consensus       205 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~--------------------------------  252 (502)
T TIGR01734       205 ASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF--------------------------------  252 (502)
T ss_pred             HCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc--------------------------------
Confidence            9999999876    4889999999999999999999998765432000                                


Q ss_pred             hhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCC-----CCCCCCCccCCc
Q 005991          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDK-----GDNLSGHVGSPN  469 (666)
Q Consensus       396 ~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~-----~~~~~~~vG~p~  469 (666)
                                .....++++.+++||+++++++.+.+.+.+ ++.+++.||+||++..++....     ......++|.|.
T Consensus       253 ----------~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~  322 (502)
T TIGR01734       253 ----------NQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAK  322 (502)
T ss_pred             ----------ccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCcccccccc
Confidence                      000014799999999999999999988877 7899999999998754443221     123345799999


Q ss_pred             cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhcc---CCCCeeecccEEEEecCCcEEEEccCCC
Q 005991          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIGLWLPGGRLKIIDRKKN  546 (666)
Q Consensus       470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i~GR~~d  546 (666)
                      ++++++|+| +++..++.++   .|||+++|+.++.||+++++.|.+.|   ++++||+|||+|++|++ +|+++||.+|
T Consensus       323 ~~~~~~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d  397 (502)
T TIGR01734       323 PDMNLFIMD-EEGEPLPEGE---KGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDF  397 (502)
T ss_pred             CCCEEEEEC-CCCCCCCCCC---eeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccC
Confidence            999999999 4455555554   89999999999999999999998876   34469999999999976 9999999999


Q ss_pred             eEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeC--C--CCeEEEEEEcCh----------hHHHHHHHHcCCCcccccc
Q 005991          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS--F--NSCLVAIVAVDP----------DVLKDWAASQGIKVIYCFS  612 (666)
Q Consensus       547 ~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~--~--~~~~va~vv~~~----------~~l~~~~~~~~l~~~~~~~  612 (666)
                      +||+ +|++|+|++||+.+.++|.|.+|+|++..  +  .+.++++|+++.          .+++++++++ ++     .
T Consensus       398 ~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~-l~-----~  470 (502)
T TIGR01734       398 QIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKS-LP-----A  470 (502)
T ss_pred             eEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHHhhh-Ch-----h
Confidence            9997 89999999999999999999999999843  2  257889998753          4567788877 77     8


Q ss_pred             cccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          613 FRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       613 ~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +++|+.+++++ +|++.+||++|++|++.
T Consensus       471 ~~~P~~~~~v~~lP~t~~gKv~r~~l~~~  499 (502)
T TIGR01734       471 YMIPRKFIYRDQLPLTANGKIDRKALAEE  499 (502)
T ss_pred             hcCCcEEEEccccCCCCCCcccHHHHHHh
Confidence            99999999995 88888899999999874

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-62  Score=542.95  Aligned_cols=474  Identities=19%  Similarity=0.179  Sum_probs=375.3

Q ss_pred             HHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEE
Q 005991           87 YAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISV  166 (666)
Q Consensus        87 ~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  166 (666)
                      .+++++|+++|+.+.   +.    .+.+||+||.++++++|++|.++|+++||+|+++++|+++|+++++||+++|++++
T Consensus         5 ~~a~~~p~~~a~~~~---~~----~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~   77 (501)
T PRK13390          5 THAQIAPDRPAVIVA---ET----GEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT   77 (501)
T ss_pred             hhhhhCCCCcEEEec---CC----CeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            457789999999753   21    24699999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCCC
Q 005991          167 PLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSS  246 (666)
Q Consensus       167 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (666)
                      |+++.++++++.++++++++++++++.............   ....+.+.....           ...++++......  
T Consensus        78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~--  141 (501)
T PRK13390         78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGAD---LPLRLSFGGEID-----------GFGSFEAALAGAG--  141 (501)
T ss_pred             ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhc---cceEEEecCccc-----------ccccHHHHhcccC--
Confidence            999999999999999999999999987543332222111   112222221100           1123333322110  


Q ss_pred             CCCCCCCCCCCcEEEEeccCCCCCccEEEe--cHHHHHHHH----hhcccccccCCCcEEEEcCChHHHHHHHHHHHHHH
Q 005991          247 PQPFCPPKPEDIATICYTSGTTGTPKGAVL--THGNLISNV----AGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVY  320 (666)
Q Consensus       247 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~--th~~l~~~~----~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~  320 (666)
                        +. ....++.++|+|||||||.||||++  +|.++....    ......+.+..+|++++.+|++|.+++...+..+.
T Consensus       142 --~~-~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~  218 (501)
T PRK13390        142 --PR-LTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHA  218 (501)
T ss_pred             --CC-CCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHh
Confidence              10 1122357999999999999999995  556554321    11123466788999999999999998876555677


Q ss_pred             hCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhH
Q 005991          321 YGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (666)
Q Consensus       321 ~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (666)
                      .|+++++.+ .++..+++.|+++++|++.++|+++..+.........                                 
T Consensus       219 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------------------  265 (501)
T PRK13390        219 LGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRT---------------------------------  265 (501)
T ss_pred             cCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcc---------------------------------
Confidence            899998877 7899999999999999999999999887642100000                                 


Q ss_pred             HhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-CCCCCCccCCccCcEEEEEe
Q 005991          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKLVD  478 (666)
Q Consensus       400 ~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~ivd  478 (666)
                             .....++|.+++||+++++++.+.+++.++.++++.||+||+++++...... ....+++|+|+++ +++|+|
T Consensus       266 -------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d  337 (501)
T PRK13390        266 -------RYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICD  337 (501)
T ss_pred             -------cCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEEC
Confidence                   0000378999999999999999999998899999999999998654432221 2356789999999 799999


Q ss_pred             cCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCC--CCeeecccEEEEecCCcEEEEccCCCeEEcCCeeee
Q 005991          479 VPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG--DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYV  556 (666)
Q Consensus       479 ~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~--~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v  556 (666)
                       ++++.++.|+   .|||+|+|++++.||+++|+.|++.|..  ++|++|||+|++|+||++++.||.||+||+ +|++|
T Consensus       338 -~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~-~G~~v  412 (501)
T PRK13390        338 -DDGNELPAGR---IGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIIS-GGVNI  412 (501)
T ss_pred             -CCCCCCCCCC---ceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeE-CCeee
Confidence             5666666555   8999999999999999999999998743  689999999999999999999999999997 89999


Q ss_pred             ccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------hHHHHHHHHcCCCcccccccccCcchhHHH-
Q 005991          557 APEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------DVLKDWAASQGIKVIYCFSFRANSHVIFIA-  623 (666)
Q Consensus       557 ~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-  623 (666)
                      +|.+||+++.+||+|.+++|++.++.   +.++++|++.+         +++.++++++ ++     .|++|..+++++ 
T Consensus       413 ~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~-l~-----~~~~P~~~~~~~~  486 (501)
T PRK13390        413 YPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSR-IA-----HYKAPRSVEFVDE  486 (501)
T ss_pred             CHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHHh-cc-----cCCCCcEEEEecc
Confidence            99999999999999999999997754   57888887531         4678889888 88     999999999995 


Q ss_pred             HHHHHhhhhhhhhhc
Q 005991          624 LIHNLCQLYSSKELF  638 (666)
Q Consensus       624 ~~~~~~gK~~r~~l~  638 (666)
                      +|++.+||++|++|+
T Consensus       487 iP~t~~GKi~r~~L~  501 (501)
T PRK13390        487 LPRTPTGKLVKGLLR  501 (501)
T ss_pred             CCCCCccceehhhcC
Confidence            778888999999985

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=2.8e-62  Score=590.92  Aligned_cols=493  Identities=21%  Similarity=0.228  Sum_probs=393.3

Q ss_pred             CCCCCHHHHHHHHHHhCCC-CceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPD-YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  154 (666)
                      +...++.+.|.++++++|+ +.++.+.   +     .+.+||+||+++++++|+.|++ |+++||+|+++++|+++++++
T Consensus       628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~---~-----~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~  698 (1140)
T PRK06814        628 DYDRTLFEALIEAAKIHGFKKLAVEDP---V-----NGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVT  698 (1140)
T ss_pred             cccCCHHHHHHHHHHHcCCCCeEeECC---C-----CCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHH
Confidence            3457889999999999874 5665421   1     2459999999999999999975 999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHH--HHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcE
Q 005991          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL--LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (666)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~  232 (666)
                      ++||+++|++++|+|++++++++.+++++++++++|+++...+..  .+....++....++.+++......        .
T Consensus       699 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~  770 (1140)
T PRK06814        699 FFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIG--------L  770 (1140)
T ss_pred             HHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCC--------h
Confidence            999999999999999999999999999999999999987654322  112222333334444443211000        0


Q ss_pred             EEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHH
Q 005991          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER  312 (666)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  312 (666)
                      ...+.+....... ..+.....++|+++|+|||||||.||||++||+++.+.+......++++++|++++.+|++|.+++
T Consensus       771 ~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~  849 (1140)
T PRK06814        771 ADKIKGLLAGRFP-LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGL  849 (1140)
T ss_pred             HHHHHHHhhccCC-ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHH
Confidence            0001111111111 011113578999999999999999999999999999888877777888999999999999999998


Q ss_pred             HH-HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005991          313 AN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (666)
Q Consensus       313 ~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (666)
                      .. .+.++..|+++++.+  .+...+.+.++++++|++.++|+++..+.+...     .                     
T Consensus       850 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~-----~---------------------  903 (1140)
T PRK06814        850 TGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH-----P---------------------  903 (1140)
T ss_pred             HHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc-----c---------------------
Confidence            54 677899999999876  467788899999999999999999887754200     0                     


Q ss_pred             CCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCc
Q 005991          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPN  469 (666)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~  469 (666)
                             .           ..+++|.+++||+++++++.+.+.+.+++++++.||+||++..++...+.....+++|+|.
T Consensus       904 -------~-----------~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~  965 (1140)
T PRK06814        904 -------Y-----------DFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLL  965 (1140)
T ss_pred             -------c-----------cccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCCCCCCcCCccC
Confidence                   0           0148999999999999999999999899999999999999876665544455678999999


Q ss_pred             cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 005991          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (666)
Q Consensus       470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik  549 (666)
                      |++++++.+.++     .+   +.|||+++|++++.||+++++.+......+|||+|||+|++|+||+++++||.||+||
T Consensus       966 ~g~~~~~~~~~~-----~~---~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~ 1037 (1140)
T PRK06814        966 PGIEYRLEPVPG-----ID---EGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAK 1037 (1140)
T ss_pred             CCCeEEEeecCC-----CC---CceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeee
Confidence            999999987432     12   4799999999999999998754432223689999999999999999999999999999


Q ss_pred             cCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc---ChhHHHHHHHHcCCCcccccccccCcchhHHH
Q 005991          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV---DPDVLKDWAASQGIKVIYCFSFRANSHVIFIA  623 (666)
Q Consensus       550 l~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~---~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~  623 (666)
                      + +|++|+|.|||+++.+|+.|.+++|++.+++   +.+++++..   +.+++.++++++.++     .+++|..+.+++
T Consensus      1038 ~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~l~-----~~~~P~~i~~v~ 1111 (1140)
T PRK06814       1038 I-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASDATRAAFLAHAKAAGAS-----ELMVPAEIITID 1111 (1140)
T ss_pred             e-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCCcCHHHHHHHHHHcCCC-----cccCCcEEEEec
Confidence            7 8999999999999999999999999987654   466766653   457888999876587     999999999996


Q ss_pred             -HHHHHhhhhhhhhhccchhhh
Q 005991          624 -LIHNLCQLYSSKELFRSRCCY  644 (666)
Q Consensus       624 -~~~~~~gK~~r~~l~~~~~~~  644 (666)
                       +|++.+||++|++|++.....
T Consensus      1112 ~lP~t~~GKi~r~~L~~~~~~~ 1133 (1140)
T PRK06814       1112 EIPLLGTGKIDYVAVTKLAEEA 1133 (1140)
T ss_pred             CcCCCCCCCCcHHHHHHHHHHh
Confidence             888888999999999875543

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-61  Score=539.58  Aligned_cols=497  Identities=21%  Similarity=0.266  Sum_probs=391.0

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .++.+.|++.++.+|+++|+.+.   +      ..+||+||.+++.++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~   88 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV   88 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            57889999999999999999653   2      35999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHH
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (666)
                      +++|++++|+++.++.+++.+++++++++.++++....+.+.+.....+..+.++ ++......   .....+...++.+
T Consensus        89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~  164 (545)
T PRK08162         89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLV-IDVDDPEY---PGGRFIGALDYEA  164 (545)
T ss_pred             HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEE-EecCcccc---ccCCCcccccHHH
Confidence            9999999999999999999999999999999999888777665544444332222 22111110   0011123345666


Q ss_pred             HHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHH
Q 005991          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS  318 (666)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~  318 (666)
                      +............+.+.+++++|+|||||||.||||+++|+++...+......+.+..++++++.+|++|.+++...+..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~  244 (545)
T PRK08162        165 FLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTV  244 (545)
T ss_pred             HhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHH
Confidence            65443221111122345689999999999999999999999987666555555677888999999999999998775544


Q ss_pred             HHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhh
Q 005991          319 VYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW  397 (666)
Q Consensus       319 l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~  397 (666)
                      .+.|++.++.. .++..+++.++++++|++.++|+++..|.+.....                                 
T Consensus       245 ~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------  291 (545)
T PRK08162        245 AARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEW---------------------------------  291 (545)
T ss_pred             HHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccc---------------------------------
Confidence            44455544444 89999999999999999999999999886521000                                 


Q ss_pred             hHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-----------CCCCCCcc
Q 005991          398 DRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-----------DNLSGHVG  466 (666)
Q Consensus       398 d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG  466 (666)
                              +..+ .+.+.+++||+++++++.++++. +++++++.||+||+++.++.....           ....+++|
T Consensus       292 --------~~~~-~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  361 (545)
T PRK08162        292 --------RAGI-DHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQG  361 (545)
T ss_pred             --------ccCC-ccceEEEECCCCCCHHHHHHHHH-hCCceeecccccccCcceeecccccccccCCccchhhccCCCC
Confidence                    0000 14556678999999999999887 589999999999986544432111           01234567


Q ss_pred             CCccC-cEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCC
Q 005991          467 SPNPA-CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK  545 (666)
Q Consensus       467 ~p~~~-~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~  545 (666)
                      .+.+. .+++|+|++++..++.+. +..|||+|+|+.++.||+++++.|.+.| .+|||+|||+|++|+||.++|+||.|
T Consensus       362 ~~~~~~~~~~i~d~~~~~~~~~~g-~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~  439 (545)
T PRK08162        362 VRYPLQEGVTVLDPDTMQPVPADG-ETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSK  439 (545)
T ss_pred             cccCCcceEEEEcCCCCcccCCCC-CceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEcCCccEEEEeccc
Confidence            77653 468888865665554421 0269999999999999999999999999 68999999999999999999999999


Q ss_pred             CeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccC
Q 005991          546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRAN  616 (666)
Q Consensus       546 d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p  616 (666)
                      |+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++++|++.      .++++++++++ ++     .+++|
T Consensus       440 ~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~-----~~~~P  512 (545)
T PRK08162        440 DIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCREH-LA-----GFKVP  512 (545)
T ss_pred             ceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCCHHHHHHHHHHh-cc-----cccCC
Confidence            99996 8999999999999999999999999987643   5788888753      46788999988 88     99999


Q ss_pred             cchhHHHHHHHHhhhhhhhhhccc
Q 005991          617 SHVIFIALIHNLCQLYSSKELFRS  640 (666)
Q Consensus       617 ~~i~~v~~~~~~~gK~~r~~l~~~  640 (666)
                      ..+.+.++|.+.+||++|+.|++.
T Consensus       513 ~~~~~~~iP~t~~gK~~r~~l~~~  536 (545)
T PRK08162        513 KAVVFGELPKTSTGKIQKFVLREQ  536 (545)
T ss_pred             cEEEecccCCCCCcCCcHHHHHHH
Confidence            999877899999999999999765

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=1.3e-62  Score=533.02  Aligned_cols=412  Identities=19%  Similarity=0.186  Sum_probs=343.5

Q ss_pred             EeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEc
Q 005991          114 MTYGEVSAARKEIGSGLLFHGL-QKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCI  192 (666)
Q Consensus       114 ~Ty~el~~~~~~lA~~L~~~gv-~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  192 (666)
                      +.|+||.++++++|++|.+.|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            6899999999999999999998 579999999999999999999999999999999999999999999999999999987


Q ss_pred             cccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCcc
Q 005991          193 PQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPK  272 (666)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK  272 (666)
                      .+.....               ....                          .  .......++++++++|||||||.||
T Consensus       100 ~~~~~~~---------------~~~~--------------------------~--~~~~~~~~~~~~~i~~TSGTTG~PK  136 (452)
T PRK07445        100 DQLKLSH---------------PPPL--------------------------P--SQGILPNLETGWIMIPTGGSSGQIR  136 (452)
T ss_pred             Ccccccc---------------CCCC--------------------------C--ccccCCCCCCcEEEEeCCCCCCCCc
Confidence            6432100               0000                          0  0001235689999999999999999


Q ss_pred             EEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecC-CHHHHHHHHHhhcCeEEeech
Q 005991          273 GAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQG-DNLKLMDDLAVLKPTIFPSVP  351 (666)
Q Consensus       273 gV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P  351 (666)
                      ||++||+++.+.+......+++.+ ++.++++|++|.+|+...+.+++.|+++++.+. +..........+++|++.++|
T Consensus       137 gV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP  215 (452)
T PRK07445        137 FAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVP  215 (452)
T ss_pred             EEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehH
Confidence            999999999888877666666654 467889999999999888889999999998762 222223344578899999999


Q ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHH
Q 005991          352 RLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL  431 (666)
Q Consensus       352 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~  431 (666)
                      +++..+.+....                                             ..+++|.+++||+++++++.+.+
T Consensus       216 ~~l~~l~~~~~~---------------------------------------------~l~~l~~i~~gG~~l~~~~~~~~  250 (452)
T PRK07445        216 TQLQRLLQLRPQ---------------------------------------------WLAQFRTILLGGAPAWPSLLEQA  250 (452)
T ss_pred             HHHHHHHhhChh---------------------------------------------hhhcceEEEECCccCCHHHHHHH
Confidence            999887641000                                             00389999999999999999988


Q ss_pred             HHHhCCccccCcccchhhhhhhccCCCC--CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccC
Q 005991          432 KVCFGCQVMEGYGMTETSCIISAIDKGD--NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYK  509 (666)
Q Consensus       432 ~~~~~~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~  509 (666)
                      +. +++++++.||+||++..++...+.+  ...+++|+|+|+++++|++         +   ..|||+|+|++++.||++
T Consensus       251 ~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~---------g---~~Gel~v~g~~~~~gY~~  317 (452)
T PRK07445        251 RQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA---------N---QTGNITIQAQSLALGYYP  317 (452)
T ss_pred             Hh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC---------C---CcceEEEeCCccchhhcC
Confidence            76 5899999999999976554433322  2457899999999999971         2   379999999999999998


Q ss_pred             ChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEE
Q 005991          510 NEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLV  586 (666)
Q Consensus       510 ~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~v  586 (666)
                      ++.      +.+|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++.   +.++
T Consensus       318 ~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~  390 (452)
T PRK07445        318 QIL------DSQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVT  390 (452)
T ss_pred             Ccc------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEE
Confidence            643      35799999999999999999999999999996 8999999999999999999999999998754   5788


Q ss_pred             EEEEcC-----hhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          587 AIVAVD-----PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       587 a~vv~~-----~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      |+|++.     .++++++++++ ++     .|++|+.+.+++ +|++.+||++|++|++.
T Consensus       391 a~vv~~~~~~~~~~l~~~~~~~-L~-----~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~  444 (452)
T PRK07445        391 AIYVPKDPSISLEELKTAIKDQ-LS-----PFKQPKHWIPVPQLPRNPQGKINRQQLQQI  444 (452)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHh-CC-----cccCCeEEEEecCCCCCCCcccCHHHHHHH
Confidence            998863     46899999998 88     999999999995 88888899999999875

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.7e-62  Score=545.72  Aligned_cols=495  Identities=23%  Similarity=0.340  Sum_probs=385.7

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991           75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (666)
Q Consensus        75 ~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  154 (666)
                      .++..++.++|...++++|+..++      +.+...++.+||.||+.++.++|++|.++|+++||+|+++++|+++|+++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~   90 (579)
T PRK09192         17 YADFPTLVEALDYAALGEAGMNFY------DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEA   90 (579)
T ss_pred             ccchhhHHHHHHHhhccCCceEEE------ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHH
Confidence            356789999999999998876554      22222357799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCC-------HHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCC
Q 005991          155 DHACSAYSYISVPLYDTLG-------PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPS  227 (666)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~  227 (666)
                      ++||+++|++++|+++..+       .+++.++++.++++++|++....+.+.+.....+   .+.              
T Consensus        91 ~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~---~~~--------------  153 (579)
T PRK09192         91 FFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNP---LLH--------------  153 (579)
T ss_pred             HHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccc---ccc--------------
Confidence            9999999999999987543       6899999999999999999876665554322211   111              


Q ss_pred             CCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc-ccccCCCcEEEEcCCh
Q 005991          228 TSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL-MVQFYPSDIYMSYLPL  306 (666)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~d~~l~~~pl  306 (666)
                           +.++.++...... ........++++++|+|||||||.||||+++|+++++.+..... .+++.++|++++++|+
T Consensus       154 -----~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  227 (579)
T PRK09192        154 -----VLSHAWFKALPEA-DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPF  227 (579)
T ss_pred             -----eeehhhhcccCCC-ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCC
Confidence                 1223333222111 11222346789999999999999999999999999988877776 6888999999999999


Q ss_pred             HHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 005991          307 AHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAY  380 (666)
Q Consensus       307 ~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  380 (666)
                      +|.+++.. ++.++..|+++++.+     .++..+++.+.++++|+++..|..+..+.......                
T Consensus       228 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~----------------  291 (579)
T PRK09192        228 YHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK----------------  291 (579)
T ss_pred             CCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc----------------
Confidence            99999886 456788899987765     37889999999999998776555444332211000                


Q ss_pred             HHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC------CccccCcccchhhhhhhc
Q 005991          381 NSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG------CQVMEGYGMTETSCIISA  454 (666)
Q Consensus       381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~~~~  454 (666)
                                    .. ....+        +++|.+++||+++++++.+.+.+.++      ..+++.||+||+++.++.
T Consensus       292 --------------~~-~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~  348 (579)
T PRK09192        292 --------------DL-AELDL--------SCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSF  348 (579)
T ss_pred             --------------cc-cccch--------hhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEec
Confidence                          00 00001        47999999999999999999888763      348999999999865554


Q ss_pred             cCCCC----------------------------CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCcc
Q 005991          455 IDKGD----------------------------NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQG  506 (666)
Q Consensus       455 ~~~~~----------------------------~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~G  506 (666)
                      .....                            ...+++|.|+|+++++|+| +++..++.+.   .|||+++|+++++|
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g~---~Gel~i~g~~~~~g  424 (579)
T PRK09192        349 SPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERV---VGHICVRGPSLMSG  424 (579)
T ss_pred             cCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCCC---EEEEEecCCchhhh
Confidence            32211                            0125799999999999999 5556666554   89999999999999


Q ss_pred             ccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcc--eEEEEEeCCC--
Q 005991          507 YYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVL--QCFIYGDSFN--  582 (666)
Q Consensus       507 Y~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~--~~~V~g~~~~--  582 (666)
                      ||++ +.+.+.+..+|||+|||+|++ ++|+++|+||+||+||+ +|++|+|.|||++|.+||+|.  +|+|++.+++  
T Consensus       425 Y~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~  501 (579)
T PRK09192        425 YFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENG  501 (579)
T ss_pred             hcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCccCCcEEEEEeccCCC
Confidence            9999 778888888999999999999 99999999999999997 899999999999999999998  8999886643  


Q ss_pred             CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHH---HHHHHHhhhhhhhhhccchhhhhcCCCccc
Q 005991          583 SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFI---ALIHNLCQLYSSKELFRSRCCYRTGRDSSV  652 (666)
Q Consensus       583 ~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v---~~~~~~~gK~~r~~l~~~~~~~~~~~~~~~  652 (666)
                      +.++++|++.      .+++.++++++ +.    ..+++|..+.++   ++|++.+||++|++|++   .|.+|....+
T Consensus       502 ~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~----~~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~---~~~~~~~~~~  572 (579)
T PRK09192        502 EKIVLLVQCRISDEERRGQLIHALAAL-VR----SEFGVEAAVELVPPHSLPRTSSGKLSRAKAKK---RYLSGAFASL  572 (579)
T ss_pred             eeEEEEEEecCCChHHHHHHHHHHHHH-HH----HHhCCCceEEEeCCCCcCCCCCcchhHHHHHH---HHHcCCCCcc
Confidence            4677887752      25677888776 42    257788877777   48899999999999854   5555555444

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.2e-61  Score=536.95  Aligned_cols=499  Identities=26%  Similarity=0.327  Sum_probs=394.6

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ..++.++|...++++|+++|+...   +      +.+||.||.++++++|.+|.+ .|+++|++|+++++|+++|+++++
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   92 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINM---G------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF   92 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEEC---C------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999999753   2      359999999999999999984 899999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCC--CC----------
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHL--PS----------  224 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~--~~----------  224 (666)
                      ||+++|++++|+++.++.+++.+++++++++.++++....+.+.+..... ..+.++.........  ..          
T Consensus        93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (560)
T PRK08974         93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT-PVKHVILTRMGDQLSTAKGTLVNFVVKYI  171 (560)
T ss_pred             HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc-CcceEEEecccccccccccccccchhhhc
Confidence            99999999999999999999999999999999999876655554443222 233333221110000  00          


Q ss_pred             --C-CCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccccc---ccCCCc
Q 005991          225 --L-PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSD  298 (666)
Q Consensus       225 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~d  298 (666)
                        . .........++.+....+...........++++++|+|||||||.||||.++|+++...+......+   ....++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~  251 (560)
T PRK08974        172 KRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKE  251 (560)
T ss_pred             ccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCcc
Confidence              0 0000001122333333222211122234678999999999999999999999999987665433222   124467


Q ss_pred             EEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHH
Q 005991          299 IYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKL  375 (666)
Q Consensus       299 ~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l  375 (666)
                      .++..+|++|.+++.. .+.++..|+++++..  .++..+++.++++++|.+.++|+++..+......            
T Consensus       252 ~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------------  319 (560)
T PRK08974        252 LVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF------------  319 (560)
T ss_pred             EEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCc------------
Confidence            8889999999999765 556788898877764  5888999999999999999999999888652100            


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhcc
Q 005991          376 FTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAI  455 (666)
Q Consensus       376 ~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~  455 (666)
                                                    .....+++|.+++||+++++.+.+.|++.+|+++++.||+||++..++..
T Consensus       320 ------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~  369 (560)
T PRK08974        320 ------------------------------QELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVN  369 (560)
T ss_pred             ------------------------------ccCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeecc
Confidence                                          00001379999999999999999999998899999999999998766544


Q ss_pred             CCCC-CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEec
Q 005991          456 DKGD-NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP  534 (666)
Q Consensus       456 ~~~~-~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~  534 (666)
                      .... ...+++|.|+|+++++|+| +++..++.+.   .|||+++|+.++.||+++++.+++.| .+|||+|||+|++++
T Consensus       370 ~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~  444 (560)
T PRK08974        370 PYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGE---PGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDE  444 (560)
T ss_pred             CCCCcccCCccccCcCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcC
Confidence            3322 3467899999999999999 4566666665   89999999999999999999999998 789999999999999


Q ss_pred             CCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc-----ChhHHHHHHHHcCCC
Q 005991          535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV-----DPDVLKDWAASQGIK  606 (666)
Q Consensus       535 dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~l~~~~~~~~l~  606 (666)
                      +|.++++||.+|+|++ +|++|+|.+||+++.+||+|.+++|++.++.   +.++++|+.     +.++++++++++ ++
T Consensus       445 ~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~l~~~l~~~-l~  522 (560)
T PRK08974        445 EGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSLTEEELITHCRRH-LT  522 (560)
T ss_pred             CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCCCCHHHHHHHHHhh-cc
Confidence            9999999999999997 7999999999999999999999999987654   456677664     346788999988 87


Q ss_pred             cccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          607 VIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       607 ~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                           .+++|..+.+++ +|.+.+||++|++|++.
T Consensus       523 -----~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~  552 (560)
T PRK08974        523 -----GYKVPKLVEFRDELPKSNVGKILRRELRDE  552 (560)
T ss_pred             -----cccCCcEEEEhhhCCCCCCCcEeHHHHHHH
Confidence                 899999999885 77888899999999864

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=2.4e-61  Score=533.89  Aligned_cols=470  Identities=19%  Similarity=0.220  Sum_probs=390.1

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .++.++|.+.++.+|+++|+...   +      +.+||.||.++++++|.+|.+.|+++|++|+++++|+.+|+++++||
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~---~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~   72 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYL---G------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGA   72 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            56889999999999999998653   2      35999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHH
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQ  238 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  238 (666)
                      +++|++++|+++.++.+++.++++.+++++++++.....       ...                      .+..+.+++
T Consensus        73 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----------------------~~~~~~~~~  123 (503)
T PRK04813         73 VKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPL-------EIL----------------------GIPVITLDE  123 (503)
T ss_pred             HHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccc-------ccc----------------------CCcEEehHH
Confidence            999999999999999999999999999999999865410       000                      011122222


Q ss_pred             HHhcC--CCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHH
Q 005991          239 LQSQG--CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI  316 (666)
Q Consensus       239 ~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~  316 (666)
                      +....  ...........++++++++|||||||.||||.+||+++...+.+....+.+..++++++.+|++|..+....+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  203 (503)
T PRK04813        124 LKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLY  203 (503)
T ss_pred             hhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHH
Confidence            22211  0101112235678999999999999999999999999998888777778888999999999999999988888


Q ss_pred             HHHHhCcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991          317 VSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (666)
Q Consensus       317 ~~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (666)
                      .++..|+++++++    .++..+++.++++++|++.++|+++..+......                             
T Consensus       204 ~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~-----------------------------  254 (503)
T PRK04813        204 PTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSF-----------------------------  254 (503)
T ss_pred             HHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhcc-----------------------------
Confidence            8999999999877    4789999999999999999999998765432100                             


Q ss_pred             CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCC-----CCCCCCcc
Q 005991          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG-----DNLSGHVG  466 (666)
Q Consensus       393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~vG  466 (666)
                                   .+...+++|.++++|+++++.+.+++.+.+ ++.+++.||+||++..++.....     .....++|
T Consensus       255 -------------~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g  321 (503)
T PRK04813        255 -------------NEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIG  321 (503)
T ss_pred             -------------CcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCccc
Confidence                         000114799999999999999999999888 78999999999997654432211     13456799


Q ss_pred             CCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhcc---CCCCeeecccEEEEecCCcEEEEcc
Q 005991          467 SPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIGLWLPGGRLKIIDR  543 (666)
Q Consensus       467 ~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i~GR  543 (666)
                      +|.++++++|+| +++..++.+.   .|||+++|+.++.||+++++.|.+.|   ++.+||+|||+|++ ++|++++.||
T Consensus       322 ~~~~~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR  396 (503)
T PRK04813        322 YAKPDSPLLIID-EEGTKLPDGE---QGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGR  396 (503)
T ss_pred             ccCCCCEEEEEC-CCCCCCCCCC---ceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEecc
Confidence            999999999999 5666666554   89999999999999999999999887   23459999999999 9999999999


Q ss_pred             CCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh----------hHHHHHHHHcCCCcccc
Q 005991          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP----------DVLKDWAASQGIKVIYC  610 (666)
Q Consensus       544 ~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~l~~~~~~~~l~~~~~  610 (666)
                      .||+||+ +|++|+|.+||+.+.++|+|.+++|++.+++   +.++++|++++          +.++++++++ ++    
T Consensus       397 ~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~-l~----  470 (503)
T PRK04813        397 IDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKER-LM----  470 (503)
T ss_pred             ccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHHhh-Cc----
Confidence            9999997 8999999999999999999999999986543   57889888754          2477888887 87    


Q ss_pred             cccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          611 FSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       611 ~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                       .+++|..+++++ +|.+.+||++|++|++.
T Consensus       471 -~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~  500 (503)
T PRK04813        471 -EYMIPRKFIYRDSLPLTPNGKIDRKALIEE  500 (503)
T ss_pred             -cccCCeEEEEeccCCCCCCCCCcHHHHHHH
Confidence             899999999995 78888899999999864

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.2e-61  Score=532.44  Aligned_cols=481  Identities=19%  Similarity=0.208  Sum_probs=389.8

Q ss_pred             HHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeE
Q 005991           86 IYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYIS  165 (666)
Q Consensus        86 ~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  165 (666)
                      ...++++||++|+.+.   ++    .+.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         4 ~~~a~~~p~~~a~~~~---~~----~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~   76 (511)
T PRK13391          4 GIHAQTTPDKPAVIMA---ST----GEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY   76 (511)
T ss_pred             hhhHhhCCCceEEEec---CC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence            4678899999999763   21    2459999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCC
Q 005991          166 VPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCS  245 (666)
Q Consensus       166 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (666)
                      +|+++.++.+++.+++++++++.++++......+.+....++.....+.++.....         .....+.+...... 
T Consensus        77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-  146 (511)
T PRK13391         77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGEL---------EGFVGYAEAVAGLP-  146 (511)
T ss_pred             eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCC---------cccccHHHHhcCCC-
Confidence            99999999999999999999999999988777666665556655555555432110         01123443332111 


Q ss_pred             CCCCCCCCCCCCcEEEEeccCCCCCccEEEe--cHHHHHHHH---hhcccccccCCCcEEEEcCChHHHHHHHHHHHHHH
Q 005991          246 SPQPFCPPKPEDIATICYTSGTTGTPKGAVL--THGNLISNV---AGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVY  320 (666)
Q Consensus       246 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~--th~~l~~~~---~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~  320 (666)
                        . ....+.++.++++|||||||.||||++  +|.++....   ......+++.+++++++.+|++|.+++...+.++.
T Consensus       147 --~-~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~  223 (511)
T PRK13391        147 --A-TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIR  223 (511)
T ss_pred             --C-CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence              1 111234567899999999999999995  466654322   23334466788999999999999999888888899


Q ss_pred             hCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhH
Q 005991          321 YGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (666)
Q Consensus       321 ~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (666)
                      .|+++++.+ .++..+++.++++++|++.++|+++..+........                                + 
T Consensus       224 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------------------~-  270 (511)
T PRK13391        224 LGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR--------------------------------D-  270 (511)
T ss_pred             cCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc--------------------------------c-
Confidence            999999887 799999999999999999999999987754211000                                0 


Q ss_pred             HhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-CCCCCCccCCccCcEEEEEe
Q 005991          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKLVD  478 (666)
Q Consensus       400 ~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~ivd  478 (666)
                             ....+++|.+++||+++++++.+.+++.+|..+++.||+||++.++...... ....+++|+|.++ +++|+|
T Consensus       271 -------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d  342 (511)
T PRK13391        271 -------KYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILD  342 (511)
T ss_pred             -------cCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEEC
Confidence                   0001489999999999999999999998899999999999998765433221 2456789999999 699998


Q ss_pred             cCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCC-CeeecccEEEEecCCcEEEEccCCCeEEcCCeeeec
Q 005991          479 VPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGD-GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVA  557 (666)
Q Consensus       479 ~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~-gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~  557 (666)
                       +++...+.+.   .|||+++|+ ++.|||++++.+++.+..+ +||+|||+|+++++|.+++.||.||++|+ +|++|+
T Consensus       343 -~~~~~~~~g~---~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~-~G~~v~  416 (511)
T PRK13391        343 -DDGAELPPGE---PGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIIS-GGVNIY  416 (511)
T ss_pred             -CCCCCCCCCC---ceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEe-CCEEEC
Confidence             5566555554   899999999 8999999999999988655 99999999999999999999999999996 899999


Q ss_pred             cHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC---------hhHHHHHHHHcCCCcccccccccCcchhHHH-H
Q 005991          558 PEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD---------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-L  624 (666)
Q Consensus       558 p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~---------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~  624 (666)
                      |.+||+++.+||.|.+|+|++.++.   +.+++++++.         .+++.++++++ ++     .+++|..|.+++ +
T Consensus       417 ~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~-----~~~~P~~i~~~~~~  490 (511)
T PRK13391        417 PQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQR-LS-----RQKCPRSIDFEDEL  490 (511)
T ss_pred             HHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHHhh-cc-----cCcCCcEEEEeecC
Confidence            9999999999999999999987644   4678888752         25788999988 88     999999999985 7


Q ss_pred             HHHHhhhhhhhhhcc
Q 005991          625 IHNLCQLYSSKELFR  639 (666)
Q Consensus       625 ~~~~~gK~~r~~l~~  639 (666)
                      |.+.+||++|+.|++
T Consensus       491 P~t~~gKv~r~~l~~  505 (511)
T PRK13391        491 PRLPTGKLYKRLLRD  505 (511)
T ss_pred             CCCCccceeHHHHHH
Confidence            888889999999876

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.2e-62  Score=569.79  Aligned_cols=530  Identities=16%  Similarity=0.185  Sum_probs=387.6

Q ss_pred             HHHhhHHHHhhccccCCcCCCccccCCCCccccccCCCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHHH
Q 005991            5 SAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHDN   84 (666)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~   84 (666)
                      .++--..|-+.+++.+|+++++.+.+.....-           |        ...|       +. .. ..+...|+.++
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~--------~~~~-------~~-~~-~~~~~~sl~~l  452 (994)
T PRK07868        401 EAALALARGAADAAVAANRSVRTLAVETARTL-----------P--------RLAR-------LG-QI-NDHTRISLGRI  452 (994)
T ss_pred             HHHHHHhhhHHHHHHHhhhhhHHHHHHHHHhh-----------h--------hHHH-------hh-hc-CCCCCccHHHH
Confidence            34444566677778888888888765432210           0        0000       00 01 11345689999


Q ss_pred             HHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCe
Q 005991           85 FIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYI  164 (666)
Q Consensus        85 ~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~  164 (666)
                      |+++++++||++|+.+.   +      +.+||+||+++++++|++|.+.|+++||+|+|+++|+++|+++++||+++|++
T Consensus       453 l~~~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav  523 (994)
T PRK07868        453 IAEQARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAV  523 (994)
T ss_pred             HHHHHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCE
Confidence            99999999999999763   2      35999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCC
Q 005991          165 SVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGC  244 (666)
Q Consensus       165 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (666)
                      ++|+++.   +++.+++++++++++|++....+.+.+.      ...+++++..........  ......++++......
T Consensus       524 ~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~------~~~iiv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  592 (994)
T PRK07868        524 AVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL------PGRVLVLGGGESRDLDLP--DDADVIDMEKIDPDAV  592 (994)
T ss_pred             EEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc------CceEEEecCCccccccCC--cchhhhhhhhcCcccc
Confidence            9999985   6899999999999999987766554321      134455543211000000  0000111221111100


Q ss_pred             CCC--CCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHH-HHHh
Q 005991          245 SSP--QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIV-SVYY  321 (666)
Q Consensus       245 ~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~-~l~~  321 (666)
                      ..+  ....+..++|+++|+|| ||||.||++.++|.+...........+++.++|++++.+|++|++++...+. ++..
T Consensus       593 ~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~g  671 (994)
T PRK07868        593 ELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVG  671 (994)
T ss_pred             cCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhcc
Confidence            000  01112246899999999 5888888888888776554444445577889999999999999999987655 4555


Q ss_pred             CcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHH
Q 005991          322 GVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL  400 (666)
Q Consensus       322 G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~  400 (666)
                      |+++++.+ +++..+++.|+++++|+++++|+++..|.+....                               ...   
T Consensus       672 G~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~-------------------------------~~~---  717 (994)
T PRK07868        672 GSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAF-------------------------------VLH---  717 (994)
T ss_pred             ceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCC-------------------------------ccC---
Confidence            55565655 7999999999999999999999999887652000                               000   


Q ss_pred             hhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC-CccccCcccchhhhhhhccCCCCCCCCCccCCccCc-EEEEEe
Q 005991          401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG-CQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPAC-EIKLVD  478 (666)
Q Consensus       401 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~-~v~ivd  478 (666)
                              ..+++|.++ | +.+++++.+.+.+.++ +++++.||+||++...+.  ......+++|+|+|++ +++|.+
T Consensus       718 --------~~~slr~~~-g-~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~--~~~~~~~svG~p~pg~~~v~i~~  785 (994)
T PRK07868        718 --------GNHPVRLFI-G-SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN--VSGAKIGSKGRPLPGAGRVELAA  785 (994)
T ss_pred             --------CCCceEEEe-c-CCCCHHHHHHHHHHhCchheeeeeecccccccccc--cCCCCCcccCCccCCCCceeEEE
Confidence                    003788776 3 3499999999998886 889999999998754332  2234568999999998 777652


Q ss_pred             cC---------CCCCCCCCCCCCccEEEEeCCCcCccccCChhhhh--hccC-CCCeeecccEEEEecCCcEEEEccCCC
Q 005991          479 VP---------EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTR--EVID-GDGWLHTGDIGLWLPGGRLKIIDRKKN  546 (666)
Q Consensus       479 ~~---------~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~--~~~~-~~gw~~TGDlg~~~~dG~l~i~GR~~d  546 (666)
                      .+         +.++.....+++.|||+++|+..    + +|+.+.  ..|. ++|||+|||+|++|+||+|+|+||+||
T Consensus       786 ~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd  860 (994)
T PRK07868        786 YDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGS  860 (994)
T ss_pred             ecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCC
Confidence            11         11111122344689999999864    3 465543  2353 589999999999999999999999999


Q ss_pred             eEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC--CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcc
Q 005991          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN--SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSH  618 (666)
Q Consensus       547 ~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~  618 (666)
                      +||+ +|++|+|.|||++|.+||+|.+|+|++.+++  +.++|+|+++      +++++++++ + ++     .|++|+.
T Consensus       861 ~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~l~-~-l~-----~y~vP~~  932 (994)
T PRK07868        861 VIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEALA-S-LP-----VGLGPDI  932 (994)
T ss_pred             EEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHHHH-h-CC-----CCcCCeE
Confidence            9997 7889999999999999999999999997754  5789999853      478999998 4 77     9999999


Q ss_pred             hhHHH-HHHHHhhhhhhhhhccchh
Q 005991          619 VIFIA-LIHNLCQLYSSKELFRSRC  642 (666)
Q Consensus       619 i~~v~-~~~~~~gK~~r~~l~~~~~  642 (666)
                      |.+++ +|.+.+||++|++|++...
T Consensus       933 i~~v~~lP~T~sGKi~r~~L~~~~l  957 (994)
T PRK07868        933 VHVVPEIPLSATYRPTVSALRAAGI  957 (994)
T ss_pred             EEEeCCCCCCccccEehHHHHhcCC
Confidence            99995 8888889999999987744

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-60  Score=531.21  Aligned_cols=491  Identities=19%  Similarity=0.227  Sum_probs=396.2

Q ss_pred             CHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005991           80 TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS  159 (666)
Q Consensus        80 tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~  159 (666)
                      |+.++|.+.++++||++|+.+.   +      +.+||.||.++++++|++|.+.|+++||+|+++++|+++|+++++||+
T Consensus         4 ~l~~~~~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~   74 (533)
T PRK07798          4 NIADLFEAVADAVPDRVALVCG---D------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF   74 (533)
T ss_pred             cHHHHHHHHHHhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            7899999999999999999763   2      459999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHH
Q 005991          160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQL  239 (666)
Q Consensus       160 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (666)
                      ++|++++|+++.++.+++.++++++++++++++......+.+....++..+.++.++......      .....++++++
T Consensus        75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  148 (533)
T PRK07798         75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGND------LLPGAVDYEDA  148 (533)
T ss_pred             hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccc------cCCccccHHHH
Confidence            999999999999999999999999999999999887777777666667777777776432110      00123567777


Q ss_pred             HhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc---------ccc------CCCcEEEEcC
Q 005991          240 QSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---------VQF------YPSDIYMSYL  304 (666)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---------~~~------~~~d~~l~~~  304 (666)
                      ........ ... ...++.++|+|||||||.||||+++|+++...+......         ..+      ..+++++..+
T Consensus       149 ~~~~~~~~-~~~-~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (533)
T PRK07798        149 LAAGSPER-DFG-ERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAP  226 (533)
T ss_pred             HhccCCcC-CCC-CCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEec
Confidence            65433211 111 223455799999999999999999999987654432211         111      5678999999


Q ss_pred             ChHHHHHHHHHHHHHHhCcEEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHH-HHHHHHHhhcchHHHHHHHHHH
Q 005991          305 PLAHIYERANQIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIY-AGITNAVKASGTLREKLFTAAY  380 (666)
Q Consensus       305 pl~h~~~~~~~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~-~~~~~~~~~~~~~~~~l~~~~~  380 (666)
                      |++|.+++...+.+++.|+++++.+   .++..+++.++++++|++.++|..+...+ ..+. .                
T Consensus       227 pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~----------------  289 (533)
T PRK07798        227 PLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-A----------------  289 (533)
T ss_pred             chhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-c----------------
Confidence            9999999998889999999999987   58999999999999999999998765432 2111 0                


Q ss_pred             HHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCC
Q 005991          381 NSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD  459 (666)
Q Consensus       381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~  459 (666)
                                              .......++|.+++||+++++++.+++++.+ +..+++.||+||++...+..... 
T Consensus       290 ------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-  344 (533)
T PRK07798        290 ------------------------RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK-  344 (533)
T ss_pred             ------------------------cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCC-
Confidence                                    0000114899999999999999999999887 78999999999986554433221 


Q ss_pred             CCCCCcc--CCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC---CCCeeecccEEEEec
Q 005991          460 NLSGHVG--SPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID---GDGWLHTGDIGLWLP  534 (666)
Q Consensus       460 ~~~~~vG--~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~---~~gw~~TGDlg~~~~  534 (666)
                       .....|  .+.++..++|+| +++..++.+.++ .|+|+ +++.++.|||++++.|++.|.   +++||+|||+|++|+
T Consensus       345 -~~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~-~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~  420 (533)
T PRK07798        345 -GAVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGE-IGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEA  420 (533)
T ss_pred             -CCccCCCCccCCCceEEEEC-CCCCCCCCCCCC-eeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcC
Confidence             112344  788999999999 555566665521 26665 566899999999999999883   346999999999999


Q ss_pred             CCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc------ChhHHHHHHHHcCC
Q 005991          535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV------DPDVLKDWAASQGI  605 (666)
Q Consensus       535 dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~~l  605 (666)
                      ||++++.||.||+||. +|++|+|.+||+++.++|.|.+++|++.++.   +.++++|++      +.+++.++++++ +
T Consensus       421 ~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l  498 (533)
T PRK07798        421 DGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSS-L  498 (533)
T ss_pred             CCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCCHHHHHHHHhhh-c
Confidence            9999999999999996 8999999999999999999999999997643   568888874      447889999988 8


Q ss_pred             CcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          606 KVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       606 ~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +     .+++|..+++++ +|++.+||++|+.|++.
T Consensus       499 ~-----~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~  529 (533)
T PRK07798        499 A-----GYKVPRAIWFVDEVQRSPAGKADYRWAKEQ  529 (533)
T ss_pred             c-----cCCCCeEEEEcccCCCCCcchhhHHHHhhh
Confidence            7     899999999885 78888899999999986

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.3e-61  Score=528.89  Aligned_cols=433  Identities=24%  Similarity=0.316  Sum_probs=366.5

Q ss_pred             HHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeE
Q 005991           86 IYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYIS  165 (666)
Q Consensus        86 ~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  165 (666)
                      ...++++|+++|+.+.   +      +.+||+||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        10 ~~~a~~~~~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~   80 (458)
T PRK09029         10 RHWAQVRPQAIALRLN---D------EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARV   80 (458)
T ss_pred             HHHHHhCCCceeeecC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEE
Confidence            4558899999999642   2      349999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCC
Q 005991          166 VPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCS  245 (666)
Q Consensus       166 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (666)
                      +|+++.++++++.++++++++++++++.+... +.       .+....                      ...      .
T Consensus        81 v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-------~~~~~~----------------------~~~------~  124 (458)
T PRK09029         81 LPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FS-------ALTSLH----------------------LQL------V  124 (458)
T ss_pred             eecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hh-------hccccc----------------------ccc------c
Confidence            99999999999999999999999998765421 10       000000                      000      0


Q ss_pred             CCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEE
Q 005991          246 SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAV  325 (666)
Q Consensus       246 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~  325 (666)
                      .........++++++++|||||||.||||++||++++..+......+++.++|+++..+|++|.+++...+.++..|+++
T Consensus       125 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v  204 (458)
T PRK09029        125 EGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATL  204 (458)
T ss_pred             cccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceE
Confidence            00111234678999999999999999999999999999988877778889999999999999999988777889999999


Q ss_pred             EEecCCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHH
Q 005991          326 GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI  405 (666)
Q Consensus       326 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~  405 (666)
                      ++.+.  ..+++.+  .++|.+..+|+++..+......                                          
T Consensus       205 ~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~------------------------------------------  238 (458)
T PRK09029        205 VVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE------------------------------------------  238 (458)
T ss_pred             EeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc------------------------------------------
Confidence            98664  5566666  4799999999999877652100                                          


Q ss_pred             HHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCC
Q 005991          406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT  485 (666)
Q Consensus       406 ~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~  485 (666)
                          ..++|.+++||+++++.+.+++.. +|+++++.||+||++...+....  ....++|+|+++++++|++       
T Consensus       239 ----~~~l~~i~~gG~~~~~~~~~~~~~-~g~~~~~~YG~tE~~~~~~~~~~--~~~~~~G~~~~~~~~~i~~-------  304 (458)
T PRK09029        239 ----PLSLKAVLLGGAAIPVELTEQAEQ-QGIRCWCGYGLTEMASTVCAKRA--DGLAGVGSPLPGREVKLVD-------  304 (458)
T ss_pred             ----CCcceEEEECCCCCCHHHHHHHHH-cCCcEeccccccccCcceeccCC--CCCCCCCCCCCCCEEEEeC-------
Confidence                137999999999999999999886 59999999999999865443322  2235699999999999976       


Q ss_pred             CCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHH
Q 005991          486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVY  565 (666)
Q Consensus       486 ~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l  565 (666)
                              |||+|+|+.++.||+++++.+.... .+|||+|||+|++| ||.++|.||+||+||+ +|++|+|.|||+++
T Consensus       305 --------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~-~G~~v~p~eiE~~l  373 (458)
T PRK09029        305 --------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFFS-GGEGIQPEEIERVI  373 (458)
T ss_pred             --------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEEEEecccccceee-CCEEeCHHHHHHHH
Confidence                    8999999999999999999887654 78999999999999 9999999999999997 89999999999999


Q ss_pred             hcCcCcceEEEEEeCCC---CeEEEEEEcC----hhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhh
Q 005991          566 AKCKFVLQCFIYGDSFN---SCLVAIVAVD----PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKEL  637 (666)
Q Consensus       566 ~~~p~V~~~~V~g~~~~---~~~va~vv~~----~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l  637 (666)
                      .+||+|.+|+|++.++.   +.++|+|+++    .++++++++++ ++     .|++|..+.+++ +|++.+||++|+.|
T Consensus       374 ~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~~~~~-l~-----~~~~P~~~~~~~~~p~t~~gKi~r~~L  447 (458)
T PRK09029        374 NQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQDK-LA-----RFQQPVAYYLLPPELKNGGIKISRQAL  447 (458)
T ss_pred             hcCCCcceEEEEccCCcccCceEEEEEEcCcccCHHHHHHHHHhh-ch-----hccCCeEEEEecccccCcCCCcCHHHH
Confidence            99999999999998765   5788988864    57899999998 88     999999999996 88888899999999


Q ss_pred             ccc
Q 005991          638 FRS  640 (666)
Q Consensus       638 ~~~  640 (666)
                      ++.
T Consensus       448 ~~~  450 (458)
T PRK09029        448 KEW  450 (458)
T ss_pred             HHH
Confidence            865

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-60  Score=535.77  Aligned_cols=490  Identities=18%  Similarity=0.219  Sum_probs=362.0

Q ss_pred             CHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005991           80 TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS  159 (666)
Q Consensus        80 tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~  159 (666)
                      ++.++|++.+..+|+++|+.+........+..+.+||+||.++++++|++|.+.| .+||+|+++++|+++|+++++||+
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~   80 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL   80 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence            6789999999999999999875111011123467999999999999999999999 689999999999999999999999


Q ss_pred             hcCCeEEecCC---CCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCC--CceEEEEeCCCCCCCCCCCCCCCcEEE
Q 005991          160 AYSYISVPLYD---TLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIP--SVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (666)
Q Consensus       160 ~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~  234 (666)
                      ++|++++|+++   .++.+++.++|++++++++++++...+.+.+.....+  ....++..+..                
T Consensus        81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  144 (578)
T PRK05850         81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL----------------  144 (578)
T ss_pred             HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc----------------
Confidence            99999999997   5578999999999999999999877665544322111  11112221110                


Q ss_pred             ehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc-cc-----cCCCcEEEEcCChHH
Q 005991          235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM-VQ-----FYPSDIYMSYLPLAH  308 (666)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-~~-----~~~~d~~l~~~pl~h  308 (666)
                         ++.   ...........++++++|+|||||||.||||++||+++++.+...... +.     ...++++++++|++|
T Consensus       145 ---~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h  218 (578)
T PRK05850        145 ---DLD---SPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH  218 (578)
T ss_pred             ---ccc---cCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCC
Confidence               000   000011123467899999999999999999999999998876554332 12     356889999999999


Q ss_pred             HHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHH-HHHHHhhcchHHHHHHHHHHH
Q 005991          309 IYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG-ITNAVKASGTLREKLFTAAYN  381 (666)
Q Consensus       309 ~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~~~~~l~~~~~~  381 (666)
                      .+++.. .+.+++.|+++++.+     .++..+++.+++++++++ .+|..+..+... ....                 
T Consensus       219 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~-----------------  280 (578)
T PRK05850        219 DMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD-----------------  280 (578)
T ss_pred             CchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh-----------------
Confidence            999876 678899999999876     278999999999999865 566654433221 0000                 


Q ss_pred             HHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC------CccccCcccchhhhhhhcc
Q 005991          382 SKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG------CQVMEGYGMTETSCIISAI  455 (666)
Q Consensus       382 ~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~~~~~  455 (666)
                                            .......+++|.+++||+++++++.+.|.+.++      ..+.+.||+||++..+...
T Consensus       281 ----------------------~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  338 (578)
T PRK05850        281 ----------------------DMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATR  338 (578)
T ss_pred             ----------------------hhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheecc
Confidence                                  000000137999999999999999999888763      3689999999987654432


Q ss_pred             CCCCC-------------------------CCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCC
Q 005991          456 DKGDN-------------------------LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKN  510 (666)
Q Consensus       456 ~~~~~-------------------------~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~  510 (666)
                      .....                         ...++|.|. +.+++|+|.+++..++.++   .|||+|+|++++.|||++
T Consensus       339 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~  414 (578)
T PRK05850        339 EPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGT---VGEIWVHGDNVAAGYWQK  414 (578)
T ss_pred             CCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCC---EEEEEEecCcccccccCC
Confidence            21100                         011345554 5799999966666666654   899999999999999999


Q ss_pred             hhhhhhccC-----------CCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEe
Q 005991          511 EVQTREVID-----------GDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD  579 (666)
Q Consensus       511 ~~~t~~~~~-----------~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~  579 (666)
                      |+.|++.|.           .+|||+|||+|+++ ||+|+|+||+||+||+ +|++|+|.|||++|.+||.+. ++|++.
T Consensus       415 ~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~~-~~v~~v  491 (578)
T PRK05850        415 PEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGGR-VAAISV  491 (578)
T ss_pred             hhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCCc-EEEEEe
Confidence            999999984           25799999999997 9999999999999997 899999999999999999954 777776


Q ss_pred             CCC--CeEEEEEEcCh------hH--HHHHHHHcCCCcccc-cccccCcchhHH---HHHHHHhhhhhhhhhccc
Q 005991          580 SFN--SCLVAIVAVDP------DV--LKDWAASQGIKVIYC-FSFRANSHVIFI---ALIHNLCQLYSSKELFRS  640 (666)
Q Consensus       580 ~~~--~~~va~vv~~~------~~--l~~~~~~~~l~~~~~-~~~~~p~~i~~v---~~~~~~~gK~~r~~l~~~  640 (666)
                      ++.  +.++|+|++.+      +.  ...+++++ +...+. .....|..+.++   ++|++.+||++|++|++.
T Consensus       492 ~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~-v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~  565 (578)
T PRK05850        492 PDDGTEKLVAIIELKKRGDSDEEAMDRLRTVKRE-VTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQ  565 (578)
T ss_pred             cCCCceEEEEEEEeccccCcchhhhhhHHHHHHH-HHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHH
Confidence            644  57889988642      11  12233333 221111 012245555555   478888999999999864

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=3.5e-61  Score=530.30  Aligned_cols=446  Identities=15%  Similarity=0.131  Sum_probs=330.7

Q ss_pred             cCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEcccc------HHHHHHhhhcCCCceEEEEeCCC
Q 005991          145 LINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT------LNTLLSFISEIPSVHLIVVVGGK  218 (666)
Q Consensus       145 ~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~l~~ii~~~~~  218 (666)
                      ++|++|+++++|||+++|++++|+++.++.+++.++|++++++++|+++..      .+.+.+.....+ .+.+++....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~   79 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG   79 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence            589999999999999999999999999999999999999999999998642      122222222222 2333332211


Q ss_pred             CCCCCCCCCCCCcEEEehHHHHhcCCC------CCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccccc
Q 005991          219 DEHLPSLPSTSGVKLISYLQLQSQGCS------SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV  292 (666)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~  292 (666)
                      ....   .. ......+|+++...+..      .........++|+++|+|||||||.||||++||++++..+......+
T Consensus        80 ~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~  155 (499)
T PLN03051         80 EPVA---VP-LREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHM  155 (499)
T ss_pred             cccC---Cc-cccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhc
Confidence            1000   00 00012356665532211      01111123568999999999999999999999999887665555556


Q ss_pred             ccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcch
Q 005991          293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGT  370 (666)
Q Consensus       293 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  370 (666)
                      ++.++|++++.+|++|.+++...+.+++.|+++++++  .++..+++.|+++++|++.++|+++..|.+......     
T Consensus       156 ~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~-----  230 (499)
T PLN03051        156 DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAM-----  230 (499)
T ss_pred             CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcccc-----
Confidence            7889999999999999999877778899999999886  578999999999999999999999988765210000     


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh--CCccccCcccchh
Q 005991          371 LREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF--GCQVMEGYGMTET  448 (666)
Q Consensus       371 ~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~YG~TE~  448 (666)
                                                         .....++||.+++||+++++++.+++++.+  +++++++||+||+
T Consensus       231 -----------------------------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~  275 (499)
T PLN03051        231 -----------------------------------EGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTEL  275 (499)
T ss_pred             -----------------------------------ccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccc
Confidence                                               000003799999999999999998877643  4789999999998


Q ss_pred             hhhhhccCC-CCCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCc--CccccCChhhhhhccCC-----
Q 005991          449 SCIISAIDK-GDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIV--FQGYYKNEVQTREVIDG-----  520 (666)
Q Consensus       449 ~~~~~~~~~-~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v--~~GY~~~~~~t~~~~~~-----  520 (666)
                      +..++.... .....+++|+|.++++++|+| ++++.++.++ +..|||+++|+.+  +.|||+++ .++..+++     
T Consensus       276 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~-~~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g~~~~~  352 (499)
T PLN03051        276 ASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQ-PCVGEVALAPPMLGASDRLLNAD-HDKVYYKGMPMYG  352 (499)
T ss_pred             cceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCC-CcceEEEEecCcCCCCccccCCc-ccceeeecCCccc
Confidence            654332221 223567899999999999999 5666665552 1379999999976  58999765 34433321     


Q ss_pred             ---CCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhc-CcCcceEEEEEeCCC----CeEEEEE---
Q 005991          521 ---DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAK-CKFVLQCFIYGDSFN----SCLVAIV---  589 (666)
Q Consensus       521 ---~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~-~p~V~~~~V~g~~~~----~~~va~v---  589 (666)
                         .+||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+ ||+|.+|+|+|.+++    +.++|+|   
T Consensus       353 ~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~  431 (499)
T PLN03051        353 SKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLG  431 (499)
T ss_pred             cCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcc
Confidence               127999999999999999999999999996 8999999999999985 999999999997753    4688888   


Q ss_pred             Ec-------ChhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccch
Q 005991          590 AV-------DPDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSR  641 (666)
Q Consensus       590 v~-------~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~  641 (666)
                      ++       +.++++++|+++ +...+. .++.|..|.+++ +|++.+||++|++|++..
T Consensus       432 v~~~~~~~~~~~~l~~~~~~~-l~~~l~-~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~  489 (499)
T PLN03051        432 EEKKGFDQARPEALQKKFQEA-IQTNLN-PLFKVSRVKIVPELPRNASNKLLRRVLRDQL  489 (499)
T ss_pred             eecccccccchHHHHHHHHHH-HHhhcC-CccCCceEEEcCCCCCCCCccHHHHHHHHHH
Confidence            54       235777777655 432211 444455688885 888888999999998653

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.2e-60  Score=521.21  Aligned_cols=462  Identities=21%  Similarity=0.271  Sum_probs=380.6

Q ss_pred             eEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEE
Q 005991          112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC  191 (666)
Q Consensus       112 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~  191 (666)
                      +.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHhhhcCC-CceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCC
Q 005991          192 IPQTLNTLLSFISEIP-SVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGT  270 (666)
Q Consensus       192 ~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~  270 (666)
                      +......+.+..+..+ .++.++..+...           .....|++.......    ......++.++++|||||||.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGtTG~  154 (502)
T PRK08276         90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQPD----TPIADETAGADMLYSSGTTGR  154 (502)
T ss_pred             ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCCC----CCCCCCCcceEEEECCCCCCC
Confidence            9877766655555554 455555543211           112345554432211    112355778999999999999


Q ss_pred             ccEEEecHHHHHHHH------hhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec-CCHHHHHHHHHhhc
Q 005991          271 PKGAVLTHGNLISNV------AGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLK  343 (666)
Q Consensus       271 PKgV~~th~~l~~~~------~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~  343 (666)
                      ||||+++|.++....      ...........++++++.+|++|.+++...+.++..|+++++.+ +++..+++.+++++
T Consensus       155 PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  234 (502)
T PRK08276        155 PKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYR  234 (502)
T ss_pred             CceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhC
Confidence            999999987754322      11111222357889999999999999888888999999998887 79999999999999


Q ss_pred             CeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCC
Q 005991          344 PTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPL  423 (666)
Q Consensus       344 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l  423 (666)
                      +|++.++|+++..+.+......                             ..+|           .+++|.+++||+++
T Consensus       235 ~t~~~~~P~~~~~l~~~~~~~~-----------------------------~~~~-----------~~~lr~i~~~g~~~  274 (502)
T PRK08276        235 VTHSQLVPTMFVRMLKLPEEVR-----------------------------ARYD-----------VSSLRVAIHAAAPC  274 (502)
T ss_pred             CeEEEehHHHHHHHHhCccccC-----------------------------CCCC-----------cccceEEEecCCCC
Confidence            9999999999988765210000                             0000           14899999999999


Q ss_pred             cHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCC
Q 005991          424 SPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPI  502 (666)
Q Consensus       424 ~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~  502 (666)
                      ++++.+++.+.++..+++.||+||++.+++..... ....+++|.|+ +++++|+| ++++.++.+.   .|||+++|+.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~  349 (502)
T PRK08276        275 PVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNELPPGE---IGTVYFEMDG  349 (502)
T ss_pred             CHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCCCcCCC---ceEEEEECCC
Confidence            99999999998899999999999998755543322 24567899999 88999999 5666666664   8999999999


Q ss_pred             cCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC
Q 005991          503 VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN  582 (666)
Q Consensus       503 v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~  582 (666)
                      ++.||+++++.+++.+..+|||+|||+|+++++|.+++.||.||+||+ +|++|+|.+||.++.++|+|.+|+|++..++
T Consensus       350 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~  428 (502)
T PRK08276        350 YPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGVPDE  428 (502)
T ss_pred             ccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeCCCc
Confidence            999999999999999977799999999999999999999999999997 8999999999999999999999999987654


Q ss_pred             ---CeEEEEEEcCh---------hHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          583 ---SCLVAIVAVDP---------DVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       583 ---~~~va~vv~~~---------~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                         +.++++|++..         +++.++++++ ++     .+++|..+++++ +|++.+||++|++|++.
T Consensus       429 ~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~-l~-----~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~  493 (502)
T PRK08276        429 EMGERVKAVVQPADGADAGDALAAELIAWLRGR-LA-----HYKCPRSIDFEDELPRTPTGKLYKRRLRDR  493 (502)
T ss_pred             ccCceEEEEEEECCCCCCChhhHHHHHHHHHhh-cc-----CCCCCcEEEEecCCCCCcccchhHHHHHHH
Confidence               57899998732         2678888887 87     899999999995 88888899999999765

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.6e-59  Score=519.60  Aligned_cols=469  Identities=20%  Similarity=0.258  Sum_probs=376.5

Q ss_pred             eEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEE
Q 005991          112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC  191 (666)
Q Consensus       112 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~  191 (666)
                      +.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHhhhcCCCceEEEEeCCCCCCC-----CCCCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccC
Q 005991          192 IPQTLNTLLSFISEIPSVHLIVVVGGKDEHL-----PSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSG  266 (666)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG  266 (666)
                      +......+.+..   +....++..+......     ............+|++......    +.....++++++++||||
T Consensus        90 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSG  162 (509)
T PRK12406         90 HADLLHGLASAL---PAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTSG  162 (509)
T ss_pred             ccchhhhhhhhh---hcccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECCC
Confidence            887665544332   1111222222110000     0000001112245655543221    122345789999999999


Q ss_pred             CCCCccEEEecHHHH---HHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec-CCHHHHHHHHHhh
Q 005991          267 TTGTPKGAVLTHGNL---ISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVL  342 (666)
Q Consensus       267 TTG~PKgV~~th~~l---~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~  342 (666)
                      |||.||||+++|.+.   ..........+++.+++++++.+|++|..+....+.++..|+++++.+ .++..+++.++++
T Consensus       163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~  242 (509)
T PRK12406        163 TTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQLIERH  242 (509)
T ss_pred             CCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHHHHHHc
Confidence            999999999876553   333333444577889999999999999988877777888999998877 7999999999999


Q ss_pred             cCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCC
Q 005991          343 KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASP  422 (666)
Q Consensus       343 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~  422 (666)
                      ++|.+.++|+++..++.......                                        +..-.+++|.+++||++
T Consensus       243 ~~t~~~~~P~~~~~l~~~~~~~~----------------------------------------~~~~~~~l~~v~~gg~~  282 (509)
T PRK12406        243 RITHMHMVPTMFIRLLKLPEEVR----------------------------------------AKYDVSSLRHVIHAAAP  282 (509)
T ss_pred             CCeEEEccHHHHHHHHhCchhhc----------------------------------------ccCCCCceeEEEEcCCC
Confidence            99999999999988765211000                                        00001489999999999


Q ss_pred             CcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCC
Q 005991          423 LSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGP  501 (666)
Q Consensus       423 l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~  501 (666)
                      +++++.+++.+.+++.+++.||+||++.+++..... ...++++|.|+++++++++| ++++.++.+.   .|||+++|+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~---~Gel~v~~~  358 (509)
T PRK12406        283 CPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGE---IGEIYSRIA  358 (509)
T ss_pred             CCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCCCCCCC---ceEEEEECC
Confidence            999999999998899999999999998765543222 24567899999999999999 5566666655   899999999


Q ss_pred             CcCc-cccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeC
Q 005991          502 IVFQ-GYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS  580 (666)
Q Consensus       502 ~v~~-GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~  580 (666)
                      +++. ||+++++.+++.+ .+|||+|||+|++++||.+++.||.||+||+ +|++|+|.+||+.|.++|+|.+|+|++.+
T Consensus       359 ~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~  436 (509)
T PRK12406        359 GNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHDCAVFGIP  436 (509)
T ss_pred             ccccccccCCchhccccc-CCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeee
Confidence            9875 9999999988776 7999999999999999999999999999996 89999999999999999999999999876


Q ss_pred             CC---CeEEEEEEc------ChhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhcc
Q 005991          581 FN---SCLVAIVAV------DPDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFR  639 (666)
Q Consensus       581 ~~---~~~va~vv~------~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~  639 (666)
                      +.   +.++++|++      +.++++++++++ ++     .+++|..+.+++ +|++.+||++|++|++
T Consensus       437 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l~-----~~~~P~~i~~~~~iP~t~~GK~~r~~L~~  499 (509)
T PRK12406        437 DAEFGEALMAVVEPQPGATLDEADIRAQLKAR-LA-----GYKVPKHIEIMAELPREDSGKIFKRRLRD  499 (509)
T ss_pred             ccccCceeEEEEEECCCCCCCHHHHHHHHHHh-cc-----cCCCCcEEEEeccCCCCCccchhHHHHHH
Confidence            54   467888875      347888999988 88     899999999885 8888889999999975

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=7.3e-60  Score=500.61  Aligned_cols=509  Identities=20%  Similarity=0.272  Sum_probs=408.7

Q ss_pred             HHHHHHHHHHhC-CCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005991           81 LHDNFIYAVENY-PDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS  159 (666)
Q Consensus        81 l~~~~~~~a~~~-pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~  159 (666)
                      -+.++.+..+.. +|.++++++   +...++...+||.|+.+++.++|..|.+.|+++||+|++++|+.+|++++++||.
T Consensus        66 ~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~  142 (626)
T KOG1175|consen   66 CYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACA  142 (626)
T ss_pred             hHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHh
Confidence            344555554444 889999887   3223333448999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH---------HHHHHhhhcCCC-----ceEEEEeCCCCCCCCCC
Q 005991          160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL---------NTLLSFISEIPS-----VHLIVVVGGKDEHLPSL  225 (666)
Q Consensus       160 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~-----l~~ii~~~~~~~~~~~~  225 (666)
                      ++|++..++...++++++...+++++++++++.+...         ..+.+.+..++.     ...+++.+.        
T Consensus       143 r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------  214 (626)
T KOG1175|consen  143 RIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR--------  214 (626)
T ss_pred             hcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc--------
Confidence            9999999999999999999999999999999976432         122222222211     111111111        


Q ss_pred             CCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHH-HHHHHhhcccccccCCCcEEEEcC
Q 005991          226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGN-LISNVAGFSLMVQFYPSDIYMSYL  304 (666)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~-l~~~~~~~~~~~~~~~~d~~l~~~  304 (666)
                           .+...|++.+...... .+....+.+|+.+|+|||||||.|||+.+|+.. ++..+......+.+.++|+++++.
T Consensus       215 -----~~d~~~~~~~~~a~~~-~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~  288 (626)
T KOG1175|consen  215 -----NRDLFWSLELKKASPE-HPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCAS  288 (626)
T ss_pred             -----cccccHHHHhhhcCCC-CCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEec
Confidence                 0134566665544432 335667889999999999999999999999876 566666667778999999999999


Q ss_pred             ChHHHHHHHH-HHHHHHhCcEEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 005991          305 PLAHIYERAN-QIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAY  380 (666)
Q Consensus       305 pl~h~~~~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  380 (666)
                      .+.++.+.+. .+.+|+.|++++++.   +++..+++.+.++++|++++.|+.++.|..........             
T Consensus       289 d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~-------------  355 (626)
T KOG1175|consen  289 DLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTS-------------  355 (626)
T ss_pred             ccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccc-------------
Confidence            9999999887 556999999999987   48899999999999999999999999876632211100             


Q ss_pred             HHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCC-ccccCcccchhhhhhhccCCCC
Q 005991          381 NSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGD  459 (666)
Q Consensus       381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~  459 (666)
                                      ++          + .+||.+.++|+|+.++..+++.+.++. +|.+.||+||+|+.+....+..
T Consensus       356 ----------------~~----------~-~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~  408 (626)
T KOG1175|consen  356 ----------------YS----------L-KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGK  408 (626)
T ss_pred             ----------------cc----------c-ceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCC
Confidence                            00          0 379999999999999999999999987 6999999999999887766655


Q ss_pred             --CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCC---CcCccccCChhhhhhccCC--CCeeecccEEEE
Q 005991          460 --NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGP---IVFQGYYKNEVQTREVIDG--DGWLHTGDIGLW  532 (666)
Q Consensus       460 --~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~---~v~~GY~~~~~~t~~~~~~--~gw~~TGDlg~~  532 (666)
                        ..+++.|.|.+++.+.|+|. +++......  ..|||+++.+   +.+++||+|++.-..+.-.  .|+|.|||.|++
T Consensus       409 ~p~~pg~~~~p~~g~~v~i~de-~g~~~~~~~--~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~r  485 (626)
T KOG1175|consen  409 LPIKPGSAGKPFPGYDVQILDE-NGNELPPST--GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRR  485 (626)
T ss_pred             CCcCccccCCCCCCcceEEECC-CCCCcCCCC--ceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEE
Confidence              88999999999999999994 555555543  4899999973   7899999999944333323  799999999999


Q ss_pred             ecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------hHHHHHH
Q 005991          533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------DVLKDWA  600 (666)
Q Consensus       533 ~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~  600 (666)
                      |+||++++.||.||+|++ +|+|+++.|||+++..||.|.|++|+|.+++   +.++|||++.+         .+|+..+
T Consensus       486 d~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~V  564 (626)
T KOG1175|consen  486 DEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHV  564 (626)
T ss_pred             cCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHH
Confidence            999999999999999997 7999999999999999999999999998865   78999999854         3566666


Q ss_pred             HHcCCCcccccccccCcchhHH-HHHHHHhhhhhhhhhccchhhhhcCCCccceehh
Q 005991          601 ASQGIKVIYCFSFRANSHVIFI-ALIHNLCQLYSSKELFRSRCCYRTGRDSSVFCQE  656 (666)
Q Consensus       601 ~~~~l~~~~~~~~~~p~~i~~v-~~~~~~~gK~~r~~l~~~~~~~~~~~~~~~~~~~  656 (666)
                      ++. +.     ++..|+.|.++ ++|+|.+||+.|+.||+...-.--|..|.+-.++
T Consensus       565 R~~-ig-----p~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~~~~d~st~~dp~  615 (626)
T KOG1175|consen  565 RSV-IG-----PYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGKAVGDTSTLADPS  615 (626)
T ss_pred             Hhh-cC-----cccccceeEecCCCCccccchhHHHHHHHHhccCccccccccCChH
Confidence            666 77     99999999999 6999999999999999984422455555554444

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=4.6e-59  Score=506.04  Aligned_cols=427  Identities=21%  Similarity=0.278  Sum_probs=358.0

Q ss_pred             eHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccc
Q 005991          115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ  194 (666)
Q Consensus       115 Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~  194 (666)
                      ||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++..++++++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             cHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEE
Q 005991          195 TLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGA  274 (666)
Q Consensus       195 ~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV  274 (666)
                      .....         ..                      ...+..+................+++++++|||||||.||+|
T Consensus        81 ~~~~~---------~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v  129 (436)
T TIGR01923        81 LEEKD---------FQ----------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAV  129 (436)
T ss_pred             ccccc---------ee----------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcEE
Confidence            32110         00                      001111111111111111234568999999999999999999


Q ss_pred             EecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCCHHHHHHHHHhhcCeEEeechHHH
Q 005991          275 VLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLY  354 (666)
Q Consensus       275 ~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~  354 (666)
                      +++|+++...+......+++.++|++++.+|++|.+++...+.++..|+++++.+.. ..+++.++++++|++.++|+++
T Consensus       130 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~~~P~~l  208 (436)
T TIGR01923       130 PHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHISLVPTQL  208 (436)
T ss_pred             EEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEEeHHHHH
Confidence            999999999888888888999999999999999999998888899999999987643 3899999999999999999999


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHH
Q 005991          355 NRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC  434 (666)
Q Consensus       355 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~  434 (666)
                      ..+.+....                                              ..++|.+++||+++++++.++++. 
T Consensus       209 ~~l~~~~~~----------------------------------------------~~~l~~~~~~G~~~~~~~~~~~~~-  241 (436)
T TIGR01923       209 NRLLDEGGH----------------------------------------------NENLRKILLGGSAIPAPLIEEAQQ-  241 (436)
T ss_pred             HHHHhCcCC----------------------------------------------CCceEEEEECCCCCCHHHHHHHHH-
Confidence            887652000                                              037999999999999999998876 


Q ss_pred             hCCccccCcccchhhhhhhccCCCC-CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhh
Q 005991          435 FGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQ  513 (666)
Q Consensus       435 ~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~  513 (666)
                      +|+.+++.||+||++..++...... ....++|.|++++++++.+.+.      +   +.|||+++|+.++.||+++++.
T Consensus       242 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~------~---~~Gel~v~~~~~~~gy~~~~~~  312 (436)
T TIGR01923       242 YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNK------E---GHGEIMVKGANLMKGYLYQGEL  312 (436)
T ss_pred             hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCC------C---CceEEEEECCccchhhCCChhh
Confidence            5999999999999987655443322 2223599999999999954222      1   3799999999999999999988


Q ss_pred             hhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEE
Q 005991          514 TREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVA  590 (666)
Q Consensus       514 t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv  590 (666)
                      +...+ .+|||+|||+|++++||.+++.||.+|+||+ +|++|+|.+||+++.++|.|.+++|++.++.   ..++++|+
T Consensus       313 ~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~  390 (436)
T TIGR01923       313 TPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIV  390 (436)
T ss_pred             hhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEE
Confidence            87766 6899999999999999999999999999997 8999999999999999999999999987653   46788887


Q ss_pred             cC----hhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhh
Q 005991          591 VD----PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKEL  637 (666)
Q Consensus       591 ~~----~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l  637 (666)
                      ++    .+.+.+++++. ++     .+++|..+.+++ +|++.+||++|++|
T Consensus       391 ~~~~~~~~~l~~~l~~~-l~-----~~~~p~~i~~~~~iP~t~~GK~~r~~L  436 (436)
T TIGR01923       391 SESDISQAKLIAYLTEK-LA-----KYKVPIAFEKLDELPYNASGKILRNQL  436 (436)
T ss_pred             ECCCCCHHHHHHHHHHh-hh-----CCCCCeEEEEecCCCCCCCCceecccC
Confidence            54    56788999988 87     899999999885 88888899999876

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1e-57  Score=509.52  Aligned_cols=478  Identities=21%  Similarity=0.291  Sum_probs=368.6

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .++.+.+...+..+|+.+++...   ++    .+.+||.||+++++++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~   74 (545)
T PRK07768          2 SRFTEKMYANARTSPRGMVTGEP---DA----PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGL   74 (545)
T ss_pred             chHHHHHHHHhhCCCcceEEecC---CC----ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            46788888999999999988654   32    367999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHH-------HHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCc
Q 005991          159 SAYSYISVPLYDTLGPDAV-------KYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV  231 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~  231 (666)
                      +++|++++|+++..+.+++       .++++.++++++++++.....+.... .                       .+.
T Consensus        75 ~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~-----------------------~~~  130 (545)
T PRK07768         75 WMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLE-E-----------------------KGI  130 (545)
T ss_pred             HHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhc-c-----------------------cCC
Confidence            9999999999998876544       55677889999999875443222110 0                       012


Q ss_pred             EEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCC-cEEEEcCChHHHH
Q 005991          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPS-DIYMSYLPLAHIY  310 (666)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~-d~~l~~~pl~h~~  310 (666)
                      .+++++++......   ......++++++|+|||||||.||||+++|+++...+......+++..+ |++++.+|++|.+
T Consensus       131 ~~~~~~~l~~~~~~---~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~  207 (545)
T PRK07768        131 RVLTVADLLAADPI---DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDM  207 (545)
T ss_pred             ceeehhhhcccCCC---CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccch
Confidence            23455555442211   2234567999999999999999999999999999988877777777776 8999999999999


Q ss_pred             HHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005991          311 ERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (666)
Q Consensus       311 ~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (666)
                      ++.. .+.++..|+++++.+     .++..+.+.+++++++++.+.|.++..+...+......                 
T Consensus       208 g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------  270 (545)
T PRK07768        208 GMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP-----------------  270 (545)
T ss_pred             HHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc-----------------
Confidence            9886 456799999998876     27888899999999999988887776654422110000                 


Q ss_pred             HHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHH---hCC---ccccCcccchhhhhhhccCCC
Q 005991          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC---FGC---QVMEGYGMTETSCIISAIDKG  458 (666)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~---~~~---~v~~~YG~TE~~~~~~~~~~~  458 (666)
                                ..++           .+++|.+++||+++++++.+.+.+.   +|.   .+++.||+||++..++.....
T Consensus       271 ----------~~~~-----------~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~  329 (545)
T PRK07768        271 ----------GAFD-----------LSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCG  329 (545)
T ss_pred             ----------cCCC-----------chheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCC
Confidence                      0000           1479999999999999999988764   554   499999999998655433221


Q ss_pred             --------------------------CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChh
Q 005991          459 --------------------------DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEV  512 (666)
Q Consensus       459 --------------------------~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~  512 (666)
                                                ....+++|+|+++++++|+| ++++.++.++   .|||+++|+.++.||++++.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~  405 (545)
T PRK07768        330 AGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRG---VGVIELRGESVTPGYLTMDG  405 (545)
T ss_pred             CCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCC---EEEEEEccCcccccccCCCC
Confidence                                      11345799999999999999 6667666554   89999999999999998655


Q ss_pred             hhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeC--CC---CeEEE
Q 005991          513 QTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS--FN---SCLVA  587 (666)
Q Consensus       513 ~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~--~~---~~~va  587 (666)
                      ... .++.+|||+|||+|+++++|.++++||.||+||+ +|++|+|.+||+.+.+||+|.+++|++.+  +.   +.++.
T Consensus       406 ~~~-~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~  483 (545)
T PRK07768        406 FIP-AQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAV  483 (545)
T ss_pred             Ccc-cccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEE
Confidence            443 3447899999999999999999999999999998 89999999999999999999998877532  22   23344


Q ss_pred             EEEcC----hh---HHHHHHHHcCCCccccccc-ccCcchhHHH---HHHHHhhhhhhhhhcc
Q 005991          588 IVAVD----PD---VLKDWAASQGIKVIYCFSF-RANSHVIFIA---LIHNLCQLYSSKELFR  639 (666)
Q Consensus       588 ~vv~~----~~---~l~~~~~~~~l~~~~~~~~-~~p~~i~~v~---~~~~~~gK~~r~~l~~  639 (666)
                      ++.+.    +.   ++.+++++. +.    ..+ ..|..+.+++   +|++.+||++|++|+.
T Consensus       484 ~v~~~~~~~~~~~~~l~~~~~~~-l~----~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~  541 (545)
T PRK07768        484 AVESNAFEDPAEVRRIRHQVAHE-VV----AEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAE  541 (545)
T ss_pred             EEEecccccHHHHHHHHHHHHHH-HH----HHhCCCccEEEEeCCCcCCCCCchhHHHHHHHH
Confidence            44332    12   344555554 32    122 5788887773   7888889999999985

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=2.5e-58  Score=497.31  Aligned_cols=401  Identities=29%  Similarity=0.472  Sum_probs=320.2

Q ss_pred             HHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCe
Q 005991           85 FIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYI  164 (666)
Q Consensus        85 ~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~  164 (666)
                      |+++|+++||++|+++        ++.+++||+||+++++++|.+|.++|+++|++|+++++|+++++++++||+++|++
T Consensus         1 f~~~a~~~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~   72 (417)
T PF00501_consen    1 FERQAQRYPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI   72 (417)
T ss_dssp             HHHHHHHSTTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred             ChhHHhhCCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence            6899999999999976        22467999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEE----ccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHH
Q 005991          165 SVPLYDTLGPDAVKYVVNHAEIEAIFC----IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQ  240 (666)
Q Consensus       165 ~vpl~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (666)
                      ++|+++.++.+++.+++++++++++|+    +......+.+..........++.++.......           ......
T Consensus        73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~  141 (417)
T PF00501_consen   73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKK-----------EALKSA  141 (417)
T ss_dssp             EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTC-----------HHHHHH
T ss_pred             ccccccccccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccccccc-----------cccccc
Confidence            999999999999999999999999997    22223334444443344556666653221000           000000


Q ss_pred             hcCCCCCCCCCC-CCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcc--cccccCCCcEEEEcCChHHHHHH-HHHH
Q 005991          241 SQGCSSPQPFCP-PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS--LMVQFYPSDIYMSYLPLAHIYER-ANQI  316 (666)
Q Consensus       241 ~~~~~~~~~~~~-~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~--~~~~~~~~d~~l~~~pl~h~~~~-~~~~  316 (666)
                      .......   .+ ..++++++++|||||||.||+|.+||+++++.+..+.  ...+++  |++++++|++|.+++ ...+
T Consensus       142 ~~~~~~~---~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~  216 (417)
T PF00501_consen  142 SLSDEPQ---SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALL  216 (417)
T ss_dssp             HHCHCSH---STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHH
T ss_pred             ccccccc---cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccc
Confidence            0000000   00 0579999999999999999999999999999887754  222333  699999999999999 6688


Q ss_pred             HHHHhCcEEEEecCC----HHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991          317 VSVYYGVAVGFYQGD----NLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (666)
Q Consensus       317 ~~l~~G~~~~~~~~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (666)
                      .+++.|+++++.+..    +..+++.+++++||+++++|+++..+.+..... ....                       
T Consensus       217 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~~~-----------------------  272 (417)
T PF00501_consen  217 AALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TKIS-----------------------  272 (417)
T ss_dssp             HHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HHGT-----------------------
T ss_pred             ccccccccccccccccccccccchhccccccccccccccccccccccccccc-cccc-----------------------
Confidence            999999999999832    467899999999999999999999987621110 0000                       


Q ss_pred             CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCC-ccccCcccchhhhhhhccCCCC--CCCCCccCCc
Q 005991          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGD--NLSGHVGSPN  469 (666)
Q Consensus       393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~  469 (666)
                                   +..+ +++|.+++||+++++++.+++++.++. ++++.||+||++.+++......  ...+++|.|+
T Consensus       273 -------------~~~l-~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~  338 (417)
T PF00501_consen  273 -------------KKDL-SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPL  338 (417)
T ss_dssp             -------------TTTG-TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEES
T ss_pred             -------------cccc-ccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccccccccc
Confidence                         0001 369999999999999999999999987 9999999999999887553222  4678899999


Q ss_pred             cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 005991          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (666)
Q Consensus       470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik  549 (666)
                      |+++++|+|.+++++++.++   .|||+|+|+.++.||+++|+.|++.|.++|||+|||+|++|+||+|+++||.||+||
T Consensus       339 ~~~~~~ivd~~~~~~~~~g~---~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~  415 (417)
T PF00501_consen  339 PGVEVKIVDPNTGEPLPPGE---PGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIK  415 (417)
T ss_dssp             TTEEEEEECTTTSSBESTTS---EEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEE
T ss_pred             cccccccccccccccccccc---cccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEE
Confidence            99999999976688887765   899999999999999999999999997668999999999999999999999999999


Q ss_pred             c
Q 005991          550 L  550 (666)
Q Consensus       550 l  550 (666)
                      +
T Consensus       416 ~  416 (417)
T PF00501_consen  416 V  416 (417)
T ss_dssp             E
T ss_pred             e
Confidence            6

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.3e-57  Score=484.22  Aligned_cols=389  Identities=16%  Similarity=0.183  Sum_probs=335.1

Q ss_pred             EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEc
Q 005991          113 WMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCI  192 (666)
Q Consensus       113 ~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  192 (666)
                      .+||+||.++++++|+.|. .|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..++++++++.++++
T Consensus         8 ~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~   86 (414)
T PRK08308          8 EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYG   86 (414)
T ss_pred             eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEec
Confidence            5999999999999999985 689999999999999999999999999999999999999999999999999999999987


Q ss_pred             cccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCcc
Q 005991          193 PQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPK  272 (666)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK  272 (666)
                      .....               .  .                                ......++++++++|||||||.||
T Consensus        87 ~~~~~---------------~--~--------------------------------~~~~~~~~~~~~i~~TSGtTG~PK  117 (414)
T PRK08308         87 ESDFT---------------K--L--------------------------------EAVNYLAEEPSLLQYSSGTTGEPK  117 (414)
T ss_pred             Ccccc---------------c--c--------------------------------cCCCCCCCCceEEEECCCCCCCCc
Confidence            52100               0  0                                001235688999999999999999


Q ss_pred             EEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeec
Q 005991          273 GAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSV  350 (666)
Q Consensus       273 gV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~  350 (666)
                      ||++||+++.+.+..+...+++..+|+.+..+|++|.+++.. ++.++..|+++++.+ .++..+++.++++++|+++++
T Consensus       118 gv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~  197 (414)
T PRK08308        118 LIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAV  197 (414)
T ss_pred             EEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcC
Confidence            999999999988887777788889999999999999999865 678899999998877 799999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHH
Q 005991          351 PRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDF  430 (666)
Q Consensus       351 P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~  430 (666)
                      |+++..+.+....                                              ..+++.+++||+++++++.++
T Consensus       198 P~~~~~l~~~~~~----------------------------------------------~~~l~~~~~~G~~l~~~~~~~  231 (414)
T PRK08308        198 PLMLHILGRLLPG----------------------------------------------TFQFHAVMTSGTPLPEAWFYK  231 (414)
T ss_pred             HHHHHHHHhcCCc----------------------------------------------cccccEEEEccCCCCHHHHHH
Confidence            9999887652100                                              026788999999999999999


Q ss_pred             HHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCC
Q 005991          431 LKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKN  510 (666)
Q Consensus       431 ~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~  510 (666)
                      +++. +.++++.||+||++++..  .......+++|+|+|++++++.+.       .+   ..|||++++          
T Consensus       232 ~~~~-~~~~~~~YG~tE~~~~~~--~~~~~~~~~~G~p~~~~~~~~~~~-------~~---~~gel~v~~----------  288 (414)
T PRK08308        232 LRER-TTYMMQQYGCSEAGCVSI--CPDMKSHLDLGNPLPHVSVSAGSD-------EN---APEEIVVKM----------  288 (414)
T ss_pred             HHHh-CChhhhccCccccCCeee--cCCCCCCCccCccCCCeEEEEecC-------CC---CCceEEEEc----------
Confidence            9875 678999999999985433  222345678999999999998752       12   369999975          


Q ss_pred             hhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEE
Q 005991          511 EVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVA  587 (666)
Q Consensus       511 ~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va  587 (666)
                               .++||+|||+|++++||+++|+||.||+||+ +|++|+|.|||+++.++|+|.+|+|++.++.   +.+++
T Consensus       289 ---------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~  358 (414)
T PRK08308        289 ---------GDKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKA  358 (414)
T ss_pred             ---------CCceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEE
Confidence                     3689999999999999999999999999997 8999999999999999999999999987654   57788


Q ss_pred             EEEc----ChhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhh
Q 005991          588 IVAV----DPDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKE  636 (666)
Q Consensus       588 ~vv~----~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~  636 (666)
                      +++.    +.++++++++++ ++     .+++|..+.+++ +|++.+||++|+.
T Consensus       359 ~v~~~~~~~~~~l~~~l~~~-l~-----~~~~P~~i~~v~~iP~t~~GKi~r~~  406 (414)
T PRK08308        359 KVISHEEIDPVQLREWCIQH-LA-----PYQVPHEIESVTEIPKNANGKVSRKL  406 (414)
T ss_pred             EEEeCCCCCHHHHHHHHHHh-Cc-----cccCCcEEEEeccCCCCCCcCeehhh
Confidence            8875    457899999998 88     899999999995 8888889999994

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.9e-54  Score=438.33  Aligned_cols=509  Identities=22%  Similarity=0.256  Sum_probs=391.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      +..|++++|.++++++|+++|+++.   +    +.+.+||+|++++++++|+.|+..|++.||.|+++|+|++|++.++|
T Consensus        75 ~~~ti~~~F~~~vrr~p~k~aii~~---~----~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWl  147 (649)
T KOG1179|consen   75 ERRTIAELFLSQVRRQPDKPAIIYE---G----PFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWL  147 (649)
T ss_pred             cCCcHHHHHHHHHHhCCCccEEEEe---C----CCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHH
Confidence            4579999999999999999999986   2    24569999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCc-eEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV-HLIVVVGGKDEHLPSLPSTSGVKLIS  235 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (666)
                      +.+++|++...||+++..+.+.|.|..++++++|++++..+.+.++.+.+... -.+...+.....       .  .+.+
T Consensus       148 GLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~-------~--g~~~  218 (649)
T KOG1179|consen  148 GLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVP-------D--GIES  218 (649)
T ss_pred             hHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCC-------c--hHHH
Confidence            99999999999999999999999999999999999999888887774433221 122222211100       0  1123


Q ss_pred             hHHHHhcCCCCCCC---CCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHH
Q 005991          236 YLQLQSQGCSSPQP---FCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER  312 (666)
Q Consensus       236 ~~~~~~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  312 (666)
                      +...++.....+.|   ....+-.++++.+|||||||.||++++||.........+...++++++|+++..+|++|..+.
T Consensus       219 L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~  298 (649)
T KOG1179|consen  219 LLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAG  298 (649)
T ss_pred             HHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHH
Confidence            33333333322212   223456789999999999999999999999998888777778999999999999999999998


Q ss_pred             HH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005991          313 AN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (666)
Q Consensus       313 ~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (666)
                      +. +..++..|+|+++-. ++..+++++-.++++|++.-+-.+.+-|++.                              
T Consensus       299 ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~------------------------------  348 (649)
T KOG1179|consen  299 ILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQ------------------------------  348 (649)
T ss_pred             HHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcC------------------------------
Confidence            87 667999999999987 9999999999999999998877777776652                              


Q ss_pred             CCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCc-cccCcccchhhhhhhccCCCCCCCCCccCC-
Q 005991          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHVGSP-  468 (666)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~-v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p-  468 (666)
                       ++++ .++          ..++|.++--  .+.+++++.|.++||.. |.+.||+||+.......   +.+.|.+|.. 
T Consensus       349 -p~~~-~er----------~HkVRla~GN--GLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~---d~~vGA~G~~~  411 (649)
T KOG1179|consen  349 -PPSP-EER----------QHKVRLAYGN--GLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY---DGRVGACGFMS  411 (649)
T ss_pred             -CCCh-hhc----------CceEEEEecC--CCCchHHHHHHHHcCCCeEEEEeccccCcceeeee---cCccccccchh
Confidence             1110 111          1478877644  48899999999999876 99999999987644433   3344455442 


Q ss_pred             -----ccCcEEEEEecCCCC-------CCCCCCCCCccEEEE--eCCCc---CccccCChhhhhhcc------CCCCeee
Q 005991          469 -----NPACEIKLVDVPEMN-------YTSEDQPHPRGEICV--RGPIV---FQGYYKNEVQTREVI------DGDGWLH  525 (666)
Q Consensus       469 -----~~~~~v~ivd~~~~~-------~~~~~~~~~~GEl~v--~g~~v---~~GY~~~~~~t~~~~------~~~gw~~  525 (666)
                           +--+++-=+|+++++       .|-..+||+.|.+.-  .-..-   |.||.+..++|++++      .+|-||.
T Consensus       412 ~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~  491 (649)
T KOG1179|consen  412 RLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFN  491 (649)
T ss_pred             hhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEe
Confidence                 112233333444443       344455667785532  22333   899999888888765      4677999


Q ss_pred             cccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC----CeEEEEEEcC------hhH
Q 005991          526 TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN----SCLVAIVAVD------PDV  595 (666)
Q Consensus       526 TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~----~~~va~vv~~------~~~  595 (666)
                      |||+-.+|+.|+|||.||..|.+.. .||||+..|||++|....+++|+.|+|..-+    ..-+|.|+.+      -+.
T Consensus       492 tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~~  570 (649)
T KOG1179|consen  492 TGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLEK  570 (649)
T ss_pred             eCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcccchHHH
Confidence            9999999999999999999999997 8999999999999999999999999996432    3456666643      356


Q ss_pred             HHHHHHHcCCCcccccccccCcchhHHHHH-HHHhhhhhhhhhccch----h----hhhcCCCccceeh
Q 005991          596 LKDWAASQGIKVIYCFSFRANSHVIFIALI-HNLCQLYSSKELFRSR----C----CYRTGRDSSVFCQ  655 (666)
Q Consensus       596 l~~~~~~~~l~~~~~~~~~~p~~i~~v~~~-~~~~gK~~r~~l~~~~----~----~~~~~~~~~~~~~  655 (666)
                      +-.++++. ||     +|.+|..+.+.+.+ .|.+-|..+.+|.|.-    +    +|.-+.+-..|.|
T Consensus       571 l~~~l~~~-LP-----~YA~P~FlRl~~~i~~TgTFKl~K~~L~~egf~p~~~~dply~~~~~~~~y~P  633 (649)
T KOG1179|consen  571 LYQHLREN-LP-----SYARPRFLRLQDEIEKTGTFKLQKTELQKEGFNPAIISDPLYYLDNAGKSYVP  633 (649)
T ss_pred             HHHHHHhh-Cc-----cccchHHHHHHhhhhcccchhhHHHHHHHccCCccccCCceEEEeccCCcccc
Confidence            67788887 88     99999999999755 5555888888888872    1    5555555555554

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=2.7e-54  Score=464.48  Aligned_cols=389  Identities=22%  Similarity=0.311  Sum_probs=325.3

Q ss_pred             eHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEcc
Q 005991          115 TYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIP  193 (666)
Q Consensus       115 Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  193 (666)
                      ||.||.+.++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccE
Q 005991          194 QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKG  273 (666)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg  273 (666)
                      .....+.....      .++.+...                 +..................++++++++|||||||.||+
T Consensus        81 ~~~~~~~~~~~------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~  137 (408)
T TIGR01733        81 ALASRLAGLVL------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKG  137 (408)
T ss_pred             chhhhccccCC------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCCE
Confidence            76554322110      11111110                 00000000000011111457899999999999999999


Q ss_pred             EEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecC----CHHHHHHHHHhhcCeEEee
Q 005991          274 AVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQG----DNLKLMDDLAVLKPTIFPS  349 (666)
Q Consensus       274 V~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~  349 (666)
                      |.+||+++...+......+.+.++|++++.+|++|.+++...+.++..|+++++++.    .+..+.+.++++++|.+.+
T Consensus       138 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~  217 (408)
T TIGR01733       138 VVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNL  217 (408)
T ss_pred             EEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEe
Confidence            999999999998888878888899999999999999999889999999999998872    3678899999999999999


Q ss_pred             chHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHH
Q 005991          350 VPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD  429 (666)
Q Consensus       350 ~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~  429 (666)
                      +|.+++.+.+...                                             ....++|.+++||+++++++.+
T Consensus       218 ~p~~~~~l~~~~~---------------------------------------------~~~~~l~~v~~~g~~~~~~~~~  252 (408)
T TIGR01733       218 TPSLLALLAAALP---------------------------------------------PALASLRLVILGGEALTPALVD  252 (408)
T ss_pred             CHHHHHHHHHhhh---------------------------------------------hcccCceEEEEeCccCCHHHHH
Confidence            9999998876321                                             0114899999999999999999


Q ss_pred             HHHHHhC-CccccCcccchhhhhhhccCCCC---C--CCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCc
Q 005991          430 FLKVCFG-CQVMEGYGMTETSCIISAIDKGD---N--LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIV  503 (666)
Q Consensus       430 ~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~---~--~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v  503 (666)
                      ++.+.++ +.+++.||+||++.+++......   .  ...++|.|.++++++|+|+ ++..++.++   .|||+++|+.+
T Consensus       253 ~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~g~---~Gel~v~~~~~  328 (408)
T TIGR01733       253 RWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDD-DLRPVPVGV---VGELYIGGPGV  328 (408)
T ss_pred             HHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECC-CCCCCCCCC---ceEEEecCccc
Confidence            9999887 89999999999987665332222   1  1678999999999999994 466666654   89999999999


Q ss_pred             CccccCChhhhhhccCCC------C--eeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEE
Q 005991          504 FQGYYKNEVQTREVIDGD------G--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCF  575 (666)
Q Consensus       504 ~~GY~~~~~~t~~~~~~~------g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~  575 (666)
                      +.||+++++.|.+.|..+      |  ||+|||+|++|++|++++.||.||+|++ +|++|+|.+||+++..||.|.+|+
T Consensus       329 ~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~  407 (408)
T TIGR01733       329 ARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLRHPGVREAV  407 (408)
T ss_pred             cccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhcCcchhhhc
Confidence            999999999999887332      3  9999999999999999999999999997 899999999999999999999987


Q ss_pred             E
Q 005991          576 I  576 (666)
Q Consensus       576 V  576 (666)
                      |
T Consensus       408 v  408 (408)
T TIGR01733       408 V  408 (408)
T ss_pred             C
Confidence            6

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.3e-45  Score=414.85  Aligned_cols=454  Identities=19%  Similarity=0.173  Sum_probs=364.3

Q ss_pred             hHHHhhHHHHhhccccCCcCCCccccCCCCccccccCCCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHH
Q 005991            4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD   83 (666)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~   83 (666)
                      +.+.++|..++.+++.+|...++.+++......                       ..+.      ....+.+...++++
T Consensus       181 ~~~~~~~~~~l~~~~~~~~~~~~~l~ll~~~e~-----------------------~~~~------~~~~~~~~~~~i~~  231 (642)
T COG1020         181 ERELRHFLQLLAALADAPRTSLSALPLLLPSER-----------------------EVWN------ALAAPIPLRLTIHL  231 (642)
T ss_pred             HHHHHHHHHHHHHHHhCcccCcccCCCCCHHHH-----------------------hhcc------ccccCCCccchHHH
Confidence            567788999999999999877777776553310                       0000      00112344578999


Q ss_pred             HHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005991           84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (666)
Q Consensus        84 ~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~  163 (666)
                      +|...+.+.|++.|+...   +      ..+||+|+..+++++|+.|.+.|+++++.|++++++++++++.++|++++|+
T Consensus       232 ~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~  302 (642)
T COG1020         232 LFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGA  302 (642)
T ss_pred             HHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCC
Confidence            999999999999888643   2      3599999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcC
Q 005991          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQG  243 (666)
Q Consensus       164 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (666)
                      .++|+++.++.+++.+++++++++.+++........    ..++.    +..+...                +    ...
T Consensus       303 ~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~----------------~----~~~  354 (642)
T COG1020         303 AYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDD----VGLPG----LALDDAL----------------S----EIP  354 (642)
T ss_pred             eEecCCCCChHHHHHHHHhhcCccEEEecccccccc----ccCCc----ccccccc----------------c----cCC
Confidence            999999999999999999999999999983321100    00110    1111100                0    000


Q ss_pred             CCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCc
Q 005991          244 CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGV  323 (666)
Q Consensus       244 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~  323 (666)
                      ...+ ......+++.+|++|||||||.||||+++|+++.+.+.+....+.++..|+++...++.++.+....+.++..|+
T Consensus       355 ~~~~-~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~  433 (642)
T COG1020         355 DTDP-IPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGA  433 (642)
T ss_pred             ccCc-ccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHHhCCC
Confidence            0000 012345689999999999999999999999999998888877789999999999999999999999999999999


Q ss_pred             EEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhH
Q 005991          324 AVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (666)
Q Consensus       324 ~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (666)
                      ++++..    .++..+.+.+.++++|++..+|.++..+........                          ..      
T Consensus       434 ~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~--------------------------~~------  481 (642)
T COG1020         434 RLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD--------------------------LI------  481 (642)
T ss_pred             EEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc--------------------------cc------
Confidence            999877    589999999999999999999999988765300000                          00      


Q ss_pred             HhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh--CCccccCcccchhhhhhhccCCCCCC--CCCccCCccCcEEE
Q 005991          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF--GCQVMEGYGMTETSCIISAIDKGDNL--SGHVGSPNPACEIK  475 (666)
Q Consensus       400 ~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~~~~~~~~~--~~~vG~p~~~~~v~  475 (666)
                              .-...+|.+++||+.++..+...+....  ...+.+.||+||++............  ..++|+|++|+.++
T Consensus       482 --------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~  553 (642)
T COG1020         482 --------SPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLY  553 (642)
T ss_pred             --------CCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEE
Confidence                    0002489999999999999999887655  46899999999977666554433322  45899999999999


Q ss_pred             EEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeee
Q 005991          476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY  555 (666)
Q Consensus       476 ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~  555 (666)
                      |+| +....++.+.   .||++|.|.++.+||+++|+.|++.|..+.+|+|||++++++||.+.++||.|+++|+ +|++
T Consensus       554 ild-~~~~~~p~gv---~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki-~g~R  628 (642)
T COG1020         554 ILD-QGLRPLPLGV---PGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKI-RGFR  628 (642)
T ss_pred             EEC-CCCCcCCCCC---CeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEe-ceEe
Confidence            999 6667777765   7999999999999999999999999955469999999999999999999999999998 8999


Q ss_pred             eccHHHHHHHhcCc
Q 005991          556 VAPEKIENVYAKCK  569 (666)
Q Consensus       556 v~p~eIE~~l~~~p  569 (666)
                      |++.|||..+.++|
T Consensus       629 iel~eie~~l~~~~  642 (642)
T COG1020         629 IELGEIEAALAEQP  642 (642)
T ss_pred             cCcHHHHHHHhcCC
Confidence            99999999998875

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.7e-46  Score=394.60  Aligned_cols=307  Identities=25%  Similarity=0.317  Sum_probs=257.7

Q ss_pred             CCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec---
Q 005991          253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ---  329 (666)
Q Consensus       253 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~---  329 (666)
                      ..++|+++++|||||||.||||+++|+++.+.+......+  ...++++..+|++|.+++...+.++..|++++++.   
T Consensus        32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~  109 (358)
T PRK07824         32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA  109 (358)
T ss_pred             CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence            4578999999999999999999999999988877654433  35678999999999999988888899999988732   


Q ss_pred             -CCHHHHHHHHHhhc--CeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHH
Q 005991          330 -GDNLKLMDDLAVLK--PTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIR  406 (666)
Q Consensus       330 -~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~  406 (666)
                       +++..+++.+++++  .++...+|..+..+.....                             ..             
T Consensus       110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-----------------------------~~-------------  147 (358)
T PRK07824        110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-----------------------------AT-------------  147 (358)
T ss_pred             CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-----------------------------cc-------------
Confidence             68999999999998  4666778887765543100                             00             


Q ss_pred             HHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCCC
Q 005991          407 ERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS  486 (666)
Q Consensus       407 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~  486 (666)
                       ....++|.+++||+++++++.+++.+ +++++++.||+||++..+.          ..|.|++++++++.|        
T Consensus       148 -~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~----------~~G~~~~g~~v~i~~--------  207 (358)
T PRK07824        148 -AALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV----------YDGVPLDGVRVRVED--------  207 (358)
T ss_pred             -CCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC----------cCceeCCCCEEEecC--------
Confidence             00148999999999999999998876 5999999999999875332          358999999999843        


Q ss_pred             CCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHh
Q 005991          487 EDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYA  566 (666)
Q Consensus       487 ~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~  566 (666)
                             |||+++|+.++.||+++++.+  .|..+|||+|||+|++ ++|.++++||.||+||+ +|++|+|.+||++|.
T Consensus       208 -------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~  276 (358)
T PRK07824        208 -------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVLPQVVEAALA  276 (358)
T ss_pred             -------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEECHHHHHHHHH
Confidence                   999999999999999998754  4556889999999999 89999999999999997 899999999999999


Q ss_pred             cCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhh
Q 005991          567 KCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKE  636 (666)
Q Consensus       567 ~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~  636 (666)
                      +||+|.+|+|++.+++   +.++|+|+++      .++++++++++ ++     .+++|..|.+++ +|++.+||++|++
T Consensus       277 ~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~~~-l~-----~~~~P~~i~~v~~lP~t~~GKi~r~~  350 (358)
T PRK07824        277 THPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVART-LD-----RTAAPRELHVVDELPRRGIGKVDRRA  350 (358)
T ss_pred             hCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHHHHHHHHhh-Cc-----cccCCCEEEEecCCCCCCCccccHHH
Confidence            9999999999997653   5788888753      46789999988 88     999999999995 8888889999999


Q ss_pred             hccc
Q 005991          637 LFRS  640 (666)
Q Consensus       637 l~~~  640 (666)
                      |++.
T Consensus       351 L~~~  354 (358)
T PRK07824        351 LVRR  354 (358)
T ss_pred             HHHH
Confidence            9763

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=7e-39  Score=336.57  Aligned_cols=278  Identities=19%  Similarity=0.181  Sum_probs=221.6

Q ss_pred             CCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCC--CcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec-CC
Q 005991          256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYP--SDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ-GD  331 (666)
Q Consensus       256 ~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~--~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~  331 (666)
                      ++.++++|||||||.||||++||+++.+.+......+++..  .|++++++|++|.+++.. ++.++..|+++++.+ ++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~  174 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP  174 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence            45789999999999999999999999988877766666643  468999999999999765 667888999998876 67


Q ss_pred             HHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCC
Q 005991          332 NLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGG  411 (666)
Q Consensus       332 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~  411 (666)
                      +..+++.++..  |+++++|++|..+.+..    .                                          ..+
T Consensus       175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~------------------------------------------~l~  206 (386)
T TIGR02372       175 ASGIMRHARPG--DLIVGTPFIWEQLADLD----Y------------------------------------------RLP  206 (386)
T ss_pred             hHHHHHhhccC--CEEEECcHHHHHHHhhC----c------------------------------------------CCC
Confidence            88888877643  89999999998875520    0                                          002


Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHhCC-ccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCCCCCCC
Q 005991          412 RVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQP  490 (666)
Q Consensus       412 ~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~  490 (666)
                      +++. ++||+++++++.+.+++. +. .+++.||+||++++++...     ++..|.|.|++++++ +  ++      . 
T Consensus       207 slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-----~~~~~~~~p~~~~~~-~--~~------~-  269 (386)
T TIGR02372       207 GVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-----PDDPFRLLPDLACFA-D--TL------S-  269 (386)
T ss_pred             ccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-----CCCCcccCCCccccC-C--Cc------c-
Confidence            5665 688999999999999875 64 6999999999987544321     234577888876543 1  10      0 


Q ss_pred             CCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcC
Q 005991          491 HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKF  570 (666)
Q Consensus       491 ~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~  570 (666)
                          +   .|+                   ..|++|||+|+||++|+|+|+||+||+||+ +|++|+|.+||+++.+||+
T Consensus       270 ----~---~g~-------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~  322 (386)
T TIGR02372       270 ----S---AGL-------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRDILERNPR  322 (386)
T ss_pred             ----C---CCc-------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHHHHHcCCC
Confidence                0   011                   237899999999999999999999999997 8999999999999999999


Q ss_pred             cceEEEEEeCCCCeEEEEEEcCh--------hHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhh
Q 005991          571 VLQCFIYGDSFNSCLVAIVAVDP--------DVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYS  633 (666)
Q Consensus       571 V~~~~V~g~~~~~~~va~vv~~~--------~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~  633 (666)
                      |.+|+|...  .+.++|+|++++        ++++++++++ ++     .|++|..+.+++ +|++.+||++
T Consensus       323 V~~~~v~~~--g~~~~a~vv~~~~~~~~~~~~~l~~~~~~~-L~-----~~~~P~~i~~~~~lP~t~~GKi~  386 (386)
T TIGR02372       323 VRAAAVRLD--GRRLKAFIVVAEDADEAELEIELRATAARH-LP-----APARPDRFRFGTELPRTGAGKLA  386 (386)
T ss_pred             ceEEEEEcC--CceEEEEEEECCCCChHHHHHHHHHHHHHh-CC-----CCCCCcEEEEcccCCCCCCCCcC
Confidence            999999743  467899988642        4778889988 88     999999999995 8888889974

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=2.8e-34  Score=309.30  Aligned_cols=314  Identities=17%  Similarity=0.157  Sum_probs=225.5

Q ss_pred             CCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhc---ccccccCCCcEEEEcCChHHHHH-HHHHHHHHHhCcEEEEe
Q 005991          253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF---SLMVQFYPSDIYMSYLPLAHIYE-RANQIVSVYYGVAVGFY  328 (666)
Q Consensus       253 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~~-~~~~~~~l~~G~~~~~~  328 (666)
                      ..++++++++|||||||.||+|.+||.++.......   ...+++.++|++++..++.+..+ +...+.++..|++++..
T Consensus        72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  151 (422)
T TIGR02155        72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI  151 (422)
T ss_pred             CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence            355788999999999999999999999986654332   22357889999988766544322 33345577789998876


Q ss_pred             c-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHH
Q 005991          329 Q-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRE  407 (666)
Q Consensus       329 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~  407 (666)
                      + .++..+++.|++++||+++++|+++..|.+.....                         +..+.             
T Consensus       152 ~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~-------------------------~~~~~-------------  193 (422)
T TIGR02155       152 SGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRM-------------------------GIDPA-------------  193 (422)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHc-------------------------CCCcc-------------
Confidence            5 67899999999999999999999999887642211                         00000             


Q ss_pred             HhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCc--cCcEEEEEecCCCCCC
Q 005991          408 RLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPN--PACEIKLVDVPEMNYT  485 (666)
Q Consensus       408 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~~~~v~ivd~~~~~~~  485 (666)
                        ..++|.+++||+++++++.+.+++.||+++++.||+||+++..........   ..|.++  +++.++|+|++++..+
T Consensus       194 --~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~~---~~g~~~~~~~~~~eivd~~~g~~v  268 (422)
T TIGR02155       194 --QTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVET---QDGLHIWEDHFYPEIIDPHTGEVL  268 (422)
T ss_pred             --cCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeeccccc---CCCceEecCeeEEEEECCCCCCCC
Confidence              037999999999999999999999999999999999998532111111111   123343  3577889996677777


Q ss_pred             CCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecC-C-----cEEEEccCCCeEEcCCeeeeccH
Q 005991          486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG-G-----RLKIIDRKKNIFKLAQGEYVAPE  559 (666)
Q Consensus       486 ~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-G-----~l~i~GR~~d~ikl~~G~~v~p~  559 (666)
                      ++|+   .|||+++|.            +++.| ..+||+|||+|+++++ |     .++|.||.||+||+ +|++|+|.
T Consensus       269 ~~Ge---~Gelvvt~~------------~~~~~-p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G~~v~p~  331 (422)
T TIGR02155       269 PDGE---EGELVFTTL------------TKEAL-PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RGVNVFPT  331 (422)
T ss_pred             CCCC---eeEEEEecC------------Ccccc-ceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CCEEECHH
Confidence            6665   899999973            33445 5789999999999876 4     47899999999997 79999999


Q ss_pred             HHHHHHhcCcCcc-eEEEEEeCC--CCeEEEEEEcC---------------hhHHHHHHHHcCCCcccccccccCcchhH
Q 005991          560 KIENVYAKCKFVL-QCFIYGDSF--NSCLVAIVAVD---------------PDVLKDWAASQGIKVIYCFSFRANSHVIF  621 (666)
Q Consensus       560 eIE~~l~~~p~V~-~~~V~g~~~--~~~~va~vv~~---------------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~  621 (666)
                      +||+++.+||+|. ++.++....  .+.++..|++.               .++++++++++ +.     .+   ..|.+
T Consensus       332 eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-----~~---~~v~~  402 (422)
T TIGR02155       332 QLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQE-VG-----VS---MDVHL  402 (422)
T ss_pred             HHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHhc-cC-----cE---EEEEE
Confidence            9999999999998 444433221  23566655543               23456666665 44     11   22444


Q ss_pred             H---HHHHHHhhhhhhhh
Q 005991          622 I---ALIHNLCQLYSSKE  636 (666)
Q Consensus       622 v---~~~~~~~gK~~r~~  636 (666)
                      +   ++|++. ||+.|..
T Consensus       403 ~~~~~lp~~~-GK~~~~~  419 (422)
T TIGR02155       403 VEPGSLPRSE-GKARRVV  419 (422)
T ss_pred             ECCCCccCCC-CCceEEE
Confidence            3   356644 9987653

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=6.2e-31  Score=293.35  Aligned_cols=497  Identities=16%  Similarity=0.117  Sum_probs=321.5

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      -+.++.+.|.+.+...|.+.+..+.+... ..+.....||++....++.+++.|...|..+|+.|++++..+.++++..+
T Consensus        34 ~~g~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~  112 (1032)
T KOG1178|consen   34 FMGTLEDSFRRELAEAPENTGHVIIPTAS-ESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVF  112 (1032)
T ss_pred             hhcchhhHHHHHHhhcccCCCceEeeccc-ccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeee
Confidence            34577888999999999999988764422 22335568999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCC----HHHHHHH---HHhcCceEEEEccccHHHHHHhhhc-CCCceEEEEeCCCCCCCCCCCCC
Q 005991          157 ACSAYSYISVPLYDTLG----PDAVKYV---VNHAEIEAIFCIPQTLNTLLSFISE-IPSVHLIVVVGGKDEHLPSLPST  228 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~----~~~l~~~---l~~~~~~~vi~~~~~~~~~~~~~~~-~~~l~~ii~~~~~~~~~~~~~~~  228 (666)
                      |++++|..+++++|.++    ++.+..+   +......++  ..  .+.+...... .+... +                
T Consensus       113 ~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~--~~--l~i~~~~~~~~~~~~s-v----------------  171 (1032)
T KOG1178|consen  113 AVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIV--RR--LNIIDILLNSLFPKLS-V----------------  171 (1032)
T ss_pred             ehhhcceEEEEecCCCcccccchHHHhhhhhheeccceeh--hh--hhhHHHHhhccccccc-h----------------
Confidence            99999999999999999    3321111   111111110  00  0000000000 00000 0                


Q ss_pred             CCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCCh-H
Q 005991          229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPL-A  307 (666)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl-~  307 (666)
                      ... .-.|..+.....  .......-+|..+++.||||+||.||||.-+|..+.....++...+.....+++-..... +
T Consensus       172 ~~~-~~~f~~~~~~~~--~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~  248 (1032)
T KOG1178|consen  172 ETI-ADSFQMVLHNED--TREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYF  248 (1032)
T ss_pred             hhc-cchhhhhhccCC--CcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeec
Confidence            000 011111111111  111123456789999999999999999999999999999998888888877776222222 2


Q ss_pred             HHHHHHHHHHHHHhCcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 005991          308 HIYERANQIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSK  383 (666)
Q Consensus       308 h~~~~~~~~~~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k  383 (666)
                      |+.-.......|+.|..+..+.    .++..+.+.+.+++++....+|++.+.++..........        ..+    
T Consensus       249 ~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l--------~~~----  316 (1032)
T KOG1178|consen  249 DDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLL--------EHA----  316 (1032)
T ss_pred             ccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhh--------hhh----
Confidence            2222222334555566555443    357899999999999999999999888766322110000        000    


Q ss_pred             HHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCCCCC
Q 005991          384 KQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGDNLS  462 (666)
Q Consensus       384 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~  462 (666)
                         ...+...+              -.+.++...++|++....+...+...+ -.-...-|+.|+..+..+......   
T Consensus       317 ---~~~~dl~~--------------~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~---  376 (1032)
T KOG1178|consen  317 ---FSLSDLLT--------------KRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSP---  376 (1032)
T ss_pred             ---hhcccccc--------------cchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCc---
Confidence               00000000              003789999999999999888444433 222333488888776655433221   


Q ss_pred             CCccCCccCcEEEEEec---------------CCCCCCCCCCCC-CccEEEEeCCCcCccccCChhhhhhcc-----CCC
Q 005991          463 GHVGSPNPACEIKLVDV---------------PEMNYTSEDQPH-PRGEICVRGPIVFQGYYKNEVQTREVI-----DGD  521 (666)
Q Consensus       463 ~~vG~p~~~~~v~ivd~---------------~~~~~~~~~~~~-~~GEl~v~g~~v~~GY~~~~~~t~~~~-----~~~  521 (666)
                        .+.-+-...+.++..               ..+.....+..+ ..|+-+..+..+..| ++.++.....+     ..+
T Consensus       377 --s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~  453 (1032)
T KOG1178|consen  377 --SKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKA  453 (1032)
T ss_pred             --ccceecceeEEeccchhhccCCCcceeeeeccCcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchh
Confidence              111111111111110               011111111000 112222223334445 34444443333     245


Q ss_pred             CeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh-----
Q 005991          522 GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP-----  593 (666)
Q Consensus       522 gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-----  593 (666)
                      ..|||||.|+..++|.+.|.||.|++||+ +|.|+...||+.++..||.|.++++....+.   +.++|||++..     
T Consensus       454 r~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~  532 (1032)
T KOG1178|consen  454 RIYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSV  532 (1032)
T ss_pred             hcccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCch
Confidence            68999999999999999999999999998 8999999999999999999999999875543   57999999742     


Q ss_pred             --hHHHHHHHHcCCCcccccccccCcchhHH-HHHHHHhhhhhhhhhccc
Q 005991          594 --DVLKDWAASQGIKVIYCFSFRANSHVIFI-ALIHNLCQLYSSKELFRS  640 (666)
Q Consensus       594 --~~l~~~~~~~~l~~~~~~~~~~p~~i~~v-~~~~~~~gK~~r~~l~~~  640 (666)
                        ..++.|++.. ++     .|++|..++.+ +.|.+.+||+|+++|.+.
T Consensus       533 ~~~~i~~~l~~~-La-----~y~vPs~~V~l~~vPl~~~GKvDkkaL~~~  576 (1032)
T KOG1178|consen  533 LIRDIRNYLKKE-LA-----SYMLPSLVVPLAKVPLNPNGKVDKKALLEY  576 (1032)
T ss_pred             hHHHHHHhhccc-cc-----ceecceEEEEhhhCCcCCCCCcChhhhhhh
Confidence              4688999988 87     99999988888 588999999999999984

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.97  E-value=2.9e-28  Score=262.87  Aligned_cols=515  Identities=16%  Similarity=0.159  Sum_probs=341.3

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      .+|.++++..++++||.+|+...   ++.......+||++|..++.+++..|+.. -+++||.|+++.+++.|++++++|
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~  846 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA  846 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence            68999999999999999999886   66666678899999999999999999976 589999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCC------HHHHHHHHHhcCceEEEEccccHHHHHHhhhc----CCCceEEEEeCCCCCCCCCCCC
Q 005991          158 CSAYSYISVPLYDTLG------PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISE----IPSVHLIVVVGGKDEHLPSLPS  227 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~----~~~l~~ii~~~~~~~~~~~~~~  227 (666)
                      |+.+|.+++|+.|.-.      -..+..+++..++.+|+++......+...-..    ...+..++.+++.....     
T Consensus       847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~-----  921 (1363)
T KOG3628|consen  847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETI-----  921 (1363)
T ss_pred             HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhh-----
Confidence            9999999999988643      34788999999999999997654443322110    01122222222211000     


Q ss_pred             CCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChH
Q 005991          228 TSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLA  307 (666)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~  307 (666)
                           ........+.  ..+.+....+++.+|++-+.--++|.--||.++|.++++.+........+.+..-++.+++.+
T Consensus       922 -----~k~~~~~~k~--~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~  994 (1363)
T KOG3628|consen  922 -----RKRKKNIKKL--NTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPY  994 (1363)
T ss_pred             -----hhhhhhhhcc--CCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCc
Confidence                 0001111111  112233335678999999998899999999999999999999999988888888888888887


Q ss_pred             HHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 005991          308 HIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYN  381 (666)
Q Consensus       308 h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~  381 (666)
                      -..|+.. ++...+.|.+..+.+     .++..++..|.++++.-++.+-..++.+..+...+.....   .        
T Consensus       995 sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~---~-------- 1063 (1363)
T KOG3628|consen  995 SGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLS---K-------- 1063 (1363)
T ss_pred             cchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhh---h--------
Confidence            7777765 778899999987766     5999999999999998887777777666553322211110   0        


Q ss_pred             HHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh---CC---ccccCcccchhhhhhhcc
Q 005991          382 SKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF---GC---QVMEGYGMTETSCIISAI  455 (666)
Q Consensus       382 ~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~---~~---~v~~~YG~TE~~~~~~~~  455 (666)
                             .+..                  .+...++..-+.....+.+-|.+.+   |.   .+--.|+.-=.-.++...
T Consensus      1064 -------~gnn------------------~s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~ 1118 (1363)
T KOG3628|consen 1064 -------RGNN------------------TSSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRS 1118 (1363)
T ss_pred             -------hhcc------------------cccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhcc
Confidence                   0000                  0012222222333333333333332   11   122222222111111110


Q ss_pred             C---------------------------CCCCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCcccc
Q 005991          456 D---------------------------KGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYY  508 (666)
Q Consensus       456 ~---------------------------~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~  508 (666)
                      .                           +........|...+++++.|+++++..++.+++   .||||+.|..-+.+|+
T Consensus      1119 ~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge---~GEIW~~S~hnA~~~~ 1195 (1363)
T KOG3628|consen 1119 YSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGE---LGEIWVNSAHNASCSF 1195 (1363)
T ss_pred             ccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccccccccCC---cceEEecccccccccc
Confidence            0                           000111224888899999999998888888776   9999999999998888


Q ss_pred             CChhh-hhhcc---------CCCCeeecccEEEEec------CC----cEEEEccCCCeEEcCCeeeeccHHHHHHH-hc
Q 005991          509 KNEVQ-TREVI---------DGDGWLHTGDIGLWLP------GG----RLKIIDRKKNIFKLAQGEYVAPEKIENVY-AK  567 (666)
Q Consensus       509 ~~~~~-t~~~~---------~~~gw~~TGDlg~~~~------dG----~l~i~GR~~d~ikl~~G~~v~p~eIE~~l-~~  567 (666)
                      +-.+. ....|         .+.+|.||||+|++..      +|    -||++|-.++.+.+ +|.+.+|.+||..+ +.
T Consensus      1196 ~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DIE~TV~~v 1274 (1363)
T KOG3628|consen 1196 TIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDIETTVERV 1274 (1363)
T ss_pred             ccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcchHHHHHHHh
Confidence            64221 11122         3456999999999842      22    49999999999998 89999999999999 78


Q ss_pred             CcCcceEEEEEeCCCCeEEEEEEcChh-HHHHHHHHcCCCcccccccccCcchhHHH---HHHHHhhhhhhhhhccchhh
Q 005991          568 CKFVLQCFIYGDSFNSCLVAIVAVDPD-VLKDWAASQGIKVIYCFSFRANSHVIFIA---LIHNLCQLYSSKELFRSRCC  643 (666)
Q Consensus       568 ~p~V~~~~V~g~~~~~~~va~vv~~~~-~l~~~~~~~~l~~~~~~~~~~p~~i~~v~---~~~~~~gK~~r~~l~~~~~~  643 (666)
                      ||.|..|+|+...  ..+|.++....+ ++.+..--- +...+.+++-+-..+.||+   +|++..|.-.|..+   +..
T Consensus      1275 H~~I~~cavF~~~--glvVvviE~~gq~~~~~LvPlI-v~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I---~~~ 1348 (1363)
T KOG3628|consen 1275 HPSIGGCAVFQAT--GLVVVVIECHGQQELADLVPLI-VNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHI---LDS 1348 (1363)
T ss_pred             cccccceeeEeeC--CeEEEEEEecCchhHhhhhHHH-HHHHHhhcceEEEEEEEecCCccccCCchhhHHHHH---HHH
Confidence            9999999999774  345555554432 111110000 0011123455566666775   44444332222221   447


Q ss_pred             hhcCCCcccee
Q 005991          644 YRTGRDSSVFC  654 (666)
Q Consensus       644 ~~~~~~~~~~~  654 (666)
                      |..|+...+|+
T Consensus      1349 w~~~kL~~~~v 1359 (1363)
T KOG3628|consen 1349 WLAGKLDPIYV 1359 (1363)
T ss_pred             HHhcccceeee
Confidence            88888777653

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.95  E-value=6.6e-26  Score=220.70  Aligned_cols=222  Identities=13%  Similarity=0.039  Sum_probs=165.3

Q ss_pred             HHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005991           85 FIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF-HGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (666)
Q Consensus        85 ~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~  163 (666)
                      +...++++|+++|+++.   +...++.+.+||+||.++++++|++|++ +|+++||+|+|+++|+++++++++||+++|+
T Consensus         2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~   78 (227)
T TIGR03089         2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV   78 (227)
T ss_pred             hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence            46778899999999754   2211123569999999999999999998 7999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCC-CCCCCCCCCCCcEEEehHHHHhc
Q 005991          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKD-EHLPSLPSTSGVKLISYLQLQSQ  242 (666)
Q Consensus       164 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  242 (666)
                      +++|++             ++++++++++++..+.+.     .+  +.++.+.... ..........  ...+|.+....
T Consensus        79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  136 (227)
T TIGR03089        79 EVVLAG-------------DPDADVVVTGPDRLAAAA-----GS--GEVVALSLDPLGRRVAGELPP--GVIDFAPEVRV  136 (227)
T ss_pred             EEEeCC-------------CCCCCEEEeCcchhhhcc-----cC--CceEEEeccccccCCCCCCCC--cccchhhhhhc
Confidence            999995             789999999987766532     12  2223321100 0000000011  12466665543


Q ss_pred             CCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH-HHHHHHh
Q 005991          243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYY  321 (666)
Q Consensus       243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~  321 (666)
                      ......+.....++|++.|+||||+         +|++++...    ...++.++|+++ .+|++|.+|+.. ++.+++.
T Consensus       137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~  202 (227)
T TIGR03089       137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAA  202 (227)
T ss_pred             cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhcc
Confidence            2222222213567999999999986         666765554    446788999999 999999999876 7789999


Q ss_pred             CcEEEEec-CCHHHHHHHHHhhcCe
Q 005991          322 GVAVGFYQ-GDNLKLMDDLAVLKPT  345 (666)
Q Consensus       322 G~~~~~~~-~~~~~~~~~i~~~~~t  345 (666)
                      |+++++++ +++..+++.|+++|+|
T Consensus       203 G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       203 GGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             CceEEEecCCCHHHHHHHHHhhcCC
Confidence            99999988 9999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.94  E-value=1.3e-25  Score=242.07  Aligned_cols=258  Identities=17%  Similarity=0.188  Sum_probs=187.0

Q ss_pred             CCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc---cccCCCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec
Q 005991          254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ  329 (666)
Q Consensus       254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~  329 (666)
                      ..++++.+.|||||||.||+|.+||.++..........   .++.++|+++...|+.+..+... .+.++..|++++. .
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~-~  162 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP-E  162 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc-C
Confidence            45788999999999999999999999987665544332   47889999999998887665544 4556778887653 3


Q ss_pred             CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHh
Q 005991          330 GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERL  409 (666)
Q Consensus       330 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~  409 (666)
                      +.....++.|+.+++|.++++|+.+..|.+.....                         +..+.               
T Consensus       163 ~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~-------------------------g~~~~---------------  202 (445)
T TIGR03335       163 GKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAE-------------------------GIDPA---------------  202 (445)
T ss_pred             CchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHc-------------------------CCCcc---------------
Confidence            34456788999999999999999887776532211                         00000               


Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCc--cCcEEEEEecCCCCCCCC
Q 005991          410 GGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPN--PACEIKLVDVPEMNYTSE  487 (666)
Q Consensus       410 ~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~~~~v~ivd~~~~~~~~~  487 (666)
                      ..++|.+++||+++++++.+.+.+.+|+++++.||+||++.. ..+..      ..|..+  +.+.+.|+|++++.++++
T Consensus       203 ~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~-~~c~~------~~g~h~~~d~~~vEIvDp~~~~~vp~  275 (445)
T TIGR03335       203 ESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMC-GECQA------VAGLHVPEDLVHLDVYDPRHQRFLPD  275 (445)
T ss_pred             cCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhhe-EEecC------CCCccccCCceEEEEEcCCCCCCCcC
Confidence            037999999999999999999999899999999999998632 21111      123333  457899999665555666


Q ss_pred             CCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEec-C----C----cEEEEccCCCeEEcCCeeeecc
Q 005991          488 DQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP-G----G----RLKIIDRKKNIFKLAQGEYVAP  558 (666)
Q Consensus       488 ~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~-d----G----~l~i~GR~~d~ikl~~G~~v~p  558 (666)
                      |+   .|||++++-....        +.+.+ +=--|+|||++++.. +    |    .+..+||.||++++ +|.+|+|
T Consensus       276 Ge---~GELvvT~L~~~~--------~r~~~-PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~-~g~~~~p  342 (445)
T TIGR03335       276 GE---CGRIVLTTLLKPG--------ERCGS-LLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWI-SGVPFNR  342 (445)
T ss_pred             CC---ceEEEEEecCCCC--------ccCCc-eEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEE-CCEEeCH
Confidence            65   8999998753210        00000 111299999999732 2    3    15557999999999 8999999


Q ss_pred             HHHHHHHhcC---cCcc
Q 005991          559 EKIENVYAKC---KFVL  572 (666)
Q Consensus       559 ~eIE~~l~~~---p~V~  572 (666)
                      .+||++|.++   +++.
T Consensus       343 ~~ie~~l~~~~~~~~~~  359 (445)
T TIGR03335       343 VDVERAVFQRENMDSLT  359 (445)
T ss_pred             HHHHHHHhccCCCCCCC
Confidence            9999999985   5553

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.91  E-value=5e-23  Score=210.50  Aligned_cols=279  Identities=21%  Similarity=0.203  Sum_probs=205.7

Q ss_pred             CCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc---cccCCCcEEEEcCChH-HHHHHHHHHHHHHhCcEEEEec
Q 005991          254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLA-HIYERANQIVSVYYGVAVGFYQ  329 (666)
Q Consensus       254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~-h~~~~~~~~~~l~~G~~~~~~~  329 (666)
                      .-++...|--||||||+|+-+.+|+..+......+.+.   .+...+|++..+.-.. +..|+...+++--.|++++-..
T Consensus        88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~  167 (438)
T COG1541          88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPIS  167 (438)
T ss_pred             cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccC
Confidence            44667778899999999999999999877666555544   5677888876654311 1222333444555677665444


Q ss_pred             -CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHH
Q 005991          330 -GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER  408 (666)
Q Consensus       330 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~  408 (666)
                       ++...-++.++.++||++.++|+.+..|.+.+....                         ..+..             
T Consensus       168 ~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G-------------------------~~~~~-------------  209 (438)
T COG1541         168 GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEG-------------------------IDPDK-------------  209 (438)
T ss_pred             CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcC-------------------------CChhh-------------
Confidence             689999999999999999999999999988654331                         01100             


Q ss_pred             hCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCCCCC
Q 005991          409 LGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSED  488 (666)
Q Consensus       409 ~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~  488 (666)
                        .++|.+++|+|+++++..+.+.+.||+..++.||+||..+.. .........-+  -.-++.-+.|+|+++++++++|
T Consensus       210 --~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g-~~eC~~~~glh--i~eD~~~~Ei~dP~t~e~l~dg  284 (438)
T COG1541         210 --LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPG-AGECTERNGLH--IWEDHFIFEIVDPETGEQLPDG  284 (438)
T ss_pred             --cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCc-ccccccccCCC--cchhhceeeeecCCcCccCCCC
Confidence              389999999999999999999999999999999999997663 11111111111  1235678899999999999888


Q ss_pred             CCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecC----Cc-----EEEEccCCCeEEcCCeeeeccH
Q 005991          489 QPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG----GR-----LKIIDRKKNIFKLAQGEYVAPE  559 (666)
Q Consensus       489 ~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~-----l~i~GR~~d~ikl~~G~~v~p~  559 (666)
                      .   .|||.++.-.            ++.+ +---|+|||++.+.++    |.     -.|.||.||++++ .|.+|+|.
T Consensus       285 e---~GelV~T~L~------------~~~~-PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~-~G~~vfp~  347 (438)
T COG1541         285 E---RGELVITTLT------------KEGM-PLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIV-RGVNVFPS  347 (438)
T ss_pred             C---eeEEEEEecc------------ccCc-ceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEE-CCEEeCHH
Confidence            6   8999997643            1111 1123999999999874    32     5799999999998 79999999


Q ss_pred             HHHHHHhcCcCcc---eEEEEEeCCCCeEEEEEEcC
Q 005991          560 KIENVYAKCKFVL---QCFIYGDSFNSCLVAIVAVD  592 (666)
Q Consensus       560 eIE~~l~~~p~V~---~~~V~g~~~~~~~va~vv~~  592 (666)
                      .||.+|.+.+.+.   ++++........+..-|+..
T Consensus       348 ~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~  383 (438)
T COG1541         348 QIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELE  383 (438)
T ss_pred             HHHHHHhcccCCCceEEEEEecCCCCceEEEEEEec
Confidence            9999999999999   66666633345666666654

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.76  E-value=5.9e-19  Score=181.61  Aligned_cols=108  Identities=21%  Similarity=0.155  Sum_probs=98.2

Q ss_pred             CCCeeecccEEEE-ecCCcEEEEccCCCeEEcCCe---eeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc-
Q 005991          520 GDGWLHTGDIGLW-LPGGRLKIIDRKKNIFKLAQG---EYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV-  591 (666)
Q Consensus       520 ~~gw~~TGDlg~~-~~dG~l~i~GR~~d~ikl~~G---~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-  591 (666)
                      .||||+|||+|++ |+||+|+|+||.|      +|   ++|+|. ||++|.+||+|.+|+|+|.+++   +.++|+|++ 
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~  279 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAE  279 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEEC
Confidence            7899999999998 6999999999997      57   899999 9999999999999999998764   679999985 


Q ss_pred             ---ChhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccch
Q 005991          592 ---DPDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSR  641 (666)
Q Consensus       592 ---~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~  641 (666)
                         +.+++++||+++ |+     . ++|+.+.+++ +|.+.+||++|++|+...
T Consensus       280 ~~~~~~el~~~l~~~-L~-----~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~  326 (365)
T PRK09188        280 LPADEKSLRARLAGA-KP-----P-KPPEHIQPVAALPRDADGTVRDDILRLIA  326 (365)
T ss_pred             CCCCHHHHHHHHHhh-ch-----h-cCCcEEEEECCCCCCCCCCccHHHHHHHh
Confidence               457899999999 98     8 9999999995 889999999999998864

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.71  E-value=9e-16  Score=167.20  Aligned_cols=441  Identities=14%  Similarity=0.124  Sum_probs=291.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHH-HHHhCCCCCCCEEEEEcCCC--HhHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGS-GLLFHGLQKGVRIGLYLINR--PEWLI  153 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~-~L~~~gv~~gd~V~i~~~n~--~e~~~  153 (666)
                      .+..+..+++.+-.+++..+|.++-   |.+.. ...+||..+..++.++|+ .|-+-|+.++|+|.++...+  .|+++
T Consensus        92 a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~i  167 (1363)
T KOG3628|consen   92 ALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLI  167 (1363)
T ss_pred             hhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhh
Confidence            4566778888888899999999887   65533 788999999999999999 77777999999999998876  79999


Q ss_pred             HHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcE-
Q 005991          154 VDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK-  232 (666)
Q Consensus       154 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~-  232 (666)
                      ..++|..+|.+.+|+.+..+.+++..+++....+++++..................+.+           .+......+ 
T Consensus       168 sl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v-----------~~w~t~~~k~  236 (1363)
T KOG3628|consen  168 SLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAV-----------AWWKTNDFKG  236 (1363)
T ss_pred             hhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHH-----------Hhhhcccccc
Confidence            99999999999999999999999999999999999998765544332221000000000           000000000 


Q ss_pred             EEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc--------------------cc
Q 005991          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL--------------------MV  292 (666)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~--------------------~~  292 (666)
                      .+.++..         ..+..... ..+|-||++++|+--||+.+|+ ++.+.+.+..                    .+
T Consensus       237 ~~~~~k~---------~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~  305 (1363)
T KOG3628|consen  237 NYTKDKI---------KKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVF  305 (1363)
T ss_pred             eeehhhc---------cCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhcc
Confidence            1111110         11111222 8999999999999999999998 5544433211                    13


Q ss_pred             ccCCCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhh
Q 005991          293 QFYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKA  367 (666)
Q Consensus       293 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  367 (666)
                      +....++++..+......|+.+ ++.+++.|.+....+    ..|..+.+.+.++|.+++..--..+......+.+.   
T Consensus       306 ~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~---  382 (1363)
T KOG3628|consen  306 PVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQED---  382 (1363)
T ss_pred             ccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCC---
Confidence            4456677787777777777776 778999999988776    46777888888999988765544443332221110   


Q ss_pred             cchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh----CCc-c---
Q 005991          368 SGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF----GCQ-V---  439 (666)
Q Consensus       368 ~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~----~~~-v---  439 (666)
                                               |.   ..+.|.+-+.--.+++|.+++.-..+..+..+...+++    |.. +   
T Consensus       383 -------------------------p~---a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~  434 (1363)
T KOG3628|consen  383 -------------------------PK---ATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVV  434 (1363)
T ss_pred             -------------------------cc---cccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCccee
Confidence                                     00   00011111111226899999999999988766554433    221 1   


Q ss_pred             --------------ccCcccchhhhhhhccCCCC------------------------------CCCCCccCCccC-cEE
Q 005991          440 --------------MEGYGMTETSCIISAIDKGD------------------------------NLSGHVGSPNPA-CEI  474 (666)
Q Consensus       440 --------------~~~YG~TE~~~~~~~~~~~~------------------------------~~~~~vG~p~~~-~~v  474 (666)
                                    +..=+++|.+...-..+...                              .....+|...|+ +.+
T Consensus       435 ~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~  514 (1363)
T KOG3628|consen  435 DFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATL  514 (1363)
T ss_pred             echhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEE
Confidence                          11122345443322221100                              011235666665 567


Q ss_pred             EEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhcc------------CCCCeeecccEEEEecCCcEEEEc
Q 005991          475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI------------DGDGWLHTGDIGLWLPGGRLKIID  542 (666)
Q Consensus       475 ~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~------------~~~gw~~TGDlg~~~~dG~l~i~G  542 (666)
                      .+++++....+..++   +|||||.++++..+||.-+..|...|            ....|.|||-+|++. +|.++++|
T Consensus       515 ~vv~~~t~~LC~~~e---VGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl~  590 (1363)
T KOG3628|consen  515 AVVNPDTNQLCKTDE---VGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVLG  590 (1363)
T ss_pred             EEeCCCcccccccCc---ceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEEE
Confidence            777766666665554   99999999999999999888887777            123489999999995 56677777


Q ss_pred             cCCCeEEcCCeeeeccHH----------HHHHHhcCcCcceEEEEE
Q 005991          543 RKKNIFKLAQGEYVAPEK----------IENVYAKCKFVLQCFIYG  578 (666)
Q Consensus       543 R~~d~ikl~~G~~v~p~e----------IE~~l~~~p~V~~~~V~g  578 (666)
                      -++|++.--.|.+.+..+          |+.+++..+.|-++.++-
T Consensus       591 ~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~  636 (1363)
T KOG3628|consen  591 LKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE  636 (1363)
T ss_pred             echhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee
Confidence            666665433576665443          456667778888888887

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.67  E-value=5.8e-15  Score=155.75  Aligned_cols=256  Identities=18%  Similarity=0.205  Sum_probs=159.4

Q ss_pred             cEEEEeccCCCCCccEEEecHHHHHHHHhhc-cc--ccccCCCcEEEEcCCh-HHHHHHHHHHHHHHh-CcEEEEec--C
Q 005991          258 IATICYTSGTTGTPKGAVLTHGNLISNVAGF-SL--MVQFYPSDIYMSYLPL-AHIYERANQIVSVYY-GVAVGFYQ--G  330 (666)
Q Consensus       258 ~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~--~~~~~~~d~~l~~~pl-~h~~~~~~~~~~l~~-G~~~~~~~--~  330 (666)
                      -..+..||||||.|-.+..+........... ..  ..++..++++...+.- .+.+.      .+.. ...+.+++  .
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~------~~~~~~~~~~~~~l~~  174 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQ------SVNNRWISLDFFDLLA  174 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHH------HHHhccceeeecCCCc
Confidence            3456779999999999999988654332221 11  1245555655544211 12111      1111 11133333  5


Q ss_pred             CHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhC
Q 005991          331 DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLG  410 (666)
Q Consensus       331 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~  410 (666)
                      +....++.|++++|+++.+.|+.+..|++.+.+...                                           .
T Consensus       175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l-------------------------------------------~  211 (430)
T TIGR02304       175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL-------------------------------------------T  211 (430)
T ss_pred             CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC-------------------------------------------C
Confidence            788899999999999999999999998875332100                                           0


Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCCCCCCC
Q 005991          411 GRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQP  490 (666)
Q Consensus       411 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~  490 (666)
                      ..++.++++||+++++..+.+++.||+++++.||+|| +.+++.+..+.   -++-...--+|..++|+ ++        
T Consensus       212 ~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~---lHl~ed~~~vE~~ivD~-~~--------  278 (430)
T TIGR02304       212 IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGT---LHLNEDLVHIEKQYLDE-HK--------  278 (430)
T ss_pred             CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCC---EEEccccEEEEeeEECC-CC--------
Confidence            2689999999999999999999999999999999999 44332221111   11111111233336662 21        


Q ss_pred             CCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecC----Cc----E-EEEccCCCeEEc--CCeee--ec
Q 005991          491 HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG----GR----L-KIIDRKKNIFKL--AQGEY--VA  557 (666)
Q Consensus       491 ~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~----l-~i~GR~~d~ikl--~~G~~--v~  557 (666)
                        .++.+|++      +.|.      .+ +=--|+|||++.+.++    |.    | .|.||.+|++++  .+|..  |+
T Consensus       279 --~~~~ViT~------L~n~------~~-PlIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~  343 (430)
T TIGR02304       279 --RFVPIITD------FTRT------TQ-PIVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVF  343 (430)
T ss_pred             --ceEEEEec------CCCc------cc-eEEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeC
Confidence              13344433      2221      11 1113999999988544    32    4 489999999985  34544  59


Q ss_pred             cHHHHHHH-hcCcCcceEEEEEeCCCCeEEEEEEc
Q 005991          558 PEKIENVY-AKCKFVLQCFIYGDSFNSCLVAIVAV  591 (666)
Q Consensus       558 p~eIE~~l-~~~p~V~~~~V~g~~~~~~~va~vv~  591 (666)
                      |..+++++ ...++|.+..++... ...+...+++
T Consensus       344 p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~  377 (430)
T TIGR02304       344 PDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADC  377 (430)
T ss_pred             HHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEe
Confidence            99999885 568899998888665 3344444444

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.87  E-value=1.6e-07  Score=97.37  Aligned_cols=231  Identities=17%  Similarity=0.221  Sum_probs=134.6

Q ss_pred             CCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc----cccCC-CcEEEEcCChHHH---HH-H-HHHHHHHHhCc
Q 005991          254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM----VQFYP-SDIYMSYLPLAHI---YE-R-ANQIVSVYYGV  323 (666)
Q Consensus       254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~----~~~~~-~d~~l~~~pl~h~---~~-~-~~~~~~l~~G~  323 (666)
                      .++++..++-||||||.|--+.+.+..+......+...    .+... .-.++...|-...   ++ . ...+..+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            34567788889999999866666666655544333222    12211 1233333343211   11 1 11222334555


Q ss_pred             EEEEec--CCHHHHHHHHH----hhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhh
Q 005991          324 AVGFYQ--GDNLKLMDDLA----VLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW  397 (666)
Q Consensus       324 ~~~~~~--~~~~~~~~~i~----~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~  397 (666)
                      ...+-.  .+...+++.+.    ..+|..+++.|.++..++..+.+....                              
T Consensus       167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~------------------------------  216 (365)
T PF04443_consen  167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIR------------------------------  216 (365)
T ss_pred             eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCc------------------------------
Confidence            533322  36666666554    567899999999877665533222100                              


Q ss_pred             hHHhhHHHHHHhCCceEEEEecC------CCCcH-HHHHHHHHHhCC----ccccCcccchhhhhhhccCCCCCCCCCcc
Q 005991          398 DRLVFNKIRERLGGRVRFMGSGA------SPLSP-DVMDFLKVCFGC----QVMEGYGMTETSCIISAIDKGDNLSGHVG  466 (666)
Q Consensus       398 d~~~~~~~~~~~~~~lr~i~~gG------~~l~~-~~~~~~~~~~~~----~v~~~YG~TE~~~~~~~~~~~~~~~~~vG  466 (666)
                               -.+.+..+.+-.||      +.+++ ++.+.+++.||+    .+++.||+||.....+-....     .  
T Consensus       217 ---------~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~-----~--  280 (365)
T PF04443_consen  217 ---------FRLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG-----H--  280 (365)
T ss_pred             ---------ccCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC-----c--
Confidence                     00112455666665      55764 566778888998    689999999976543332111     1  


Q ss_pred             CCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecC--------CcE
Q 005991          467 SPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG--------GRL  538 (666)
Q Consensus       467 ~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d--------G~l  538 (666)
                      .+.|.. +.|.|+.+..+++.|+   .|-|-+-.+... .             .-+..-|.|+|.+..+        .++
T Consensus       281 ~~~p~w-V~iRDp~tl~~~~~Ge---~Gli~vidl~~~-s-------------~p~~IlTeDlGvl~~~~~c~cr~g~~f  342 (365)
T PF04443_consen  281 FHVPPW-VIIRDPETLEPLPPGE---TGLIQVIDLANT-S-------------YPGFILTEDLGVLHGDDDCGCRKGKYF  342 (365)
T ss_pred             ccCCCe-EEEECCCCCcCCCCCC---eeEEEEEccccc-C-------------CCcEEEEcceeeecCCCCCCCccCCEE
Confidence            122333 7778988877777766   888887766432 1             1244679999988654        279


Q ss_pred             EEEccCCCeE
Q 005991          539 KIIDRKKNIF  548 (666)
Q Consensus       539 ~i~GR~~d~i  548 (666)
                      .++||.+.-=
T Consensus       343 ~vlGR~~~ae  352 (365)
T PF04443_consen  343 EVLGRADGAE  352 (365)
T ss_pred             EEEeCCCCCc
Confidence            9999987543

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.79  E-value=1.2e-09  Score=85.82  Aligned_cols=66  Identities=20%  Similarity=0.273  Sum_probs=56.0

Q ss_pred             HHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcChhHHHHHHHHcCCCcccccccccCcchhHH---H-HHHHHhhh
Q 005991          560 KIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDPDVLKDWAASQGIKVIYCFSFRANSHVIFI---A-LIHNLCQL  631 (666)
Q Consensus       560 eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v---~-~~~~~~gK  631 (666)
                      |||+++.+||+|.+|+|++.++.   +.++|+|+++.+++++|++++ |+     .|++|+.+.++   + +|++.+||
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~~~~~i~~~~~~~-l~-----~~~~P~~~~~v~~~~~lP~t~~GK   73 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVLDEEEIRDHLRDK-LP-----PYMVPRRIRFVRLDEELPRTPSGK   73 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEEHHHHHHHHHHHH-S------GGGS-SEEEEEEESSSEEBETTSS
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEeeecccccchhhh-CC-----CcceeeEEEEccccCcCCCCCCCC
Confidence            79999999999999999997754   689999999778999999999 98     99999655555   5 88888887

...

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.26  E-value=2.4e-05  Score=86.03  Aligned_cols=158  Identities=16%  Similarity=0.176  Sum_probs=84.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHhCC-c-cccCcccchhhhhhhccCCCCCCCCCccCCccC-cEEEEEecCCCC----
Q 005991          411 GRVRFMGSGASPLSPDVMDFLKVCFGC-Q-VMEGYGMTETSCIISAIDKGDNLSGHVGSPNPA-CEIKLVDVPEMN----  483 (666)
Q Consensus       411 ~~lr~i~~gG~~l~~~~~~~~~~~~~~-~-v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~-~~v~ivd~~~~~----  483 (666)
                      ++++++.+-+..-.....+.+++.+|- + +..+|++||+..  ..... ....  .+.+.++ .-+..++.++.+    
T Consensus       267 P~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i--~i~~~-~~~~--~~~l~~~~~ffEFip~~~~~~~~~  341 (528)
T PF03321_consen  267 PNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFI--GIPLD-PEDP--GYVLAPDSGFFEFIPVDEDEQNPS  341 (528)
T ss_dssp             TT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEE--EEES--CCC----EEE-TTSSEEEEEE-STT-----
T ss_pred             CCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEE--EEecC-CCCC--ceEeecCCeEEEEEeccCCccccc
Confidence            478855443333333455666666653 3 447999999643  22211 1111  1222232 134445544322    


Q ss_pred             ----C--CCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEec--CC--cEEEEccCCCeEEcCCe
Q 005991          484 ----Y--TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP--GG--RLKIIDRKKNIFKLAQG  553 (666)
Q Consensus       484 ----~--~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~--dG--~l~i~GR~~d~ikl~~G  553 (666)
                          .  ..+.+.|..-||.|+..   .|.|+              |+.||+.++..  ++  .+.|+||.+.++.+ .|
T Consensus       342 ~~~~~l~~~ele~G~~YelviTt~---~GLyR--------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l-~g  403 (528)
T PF03321_consen  342 EQPKTLLLHELEVGEEYELVITTN---SGLYR--------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL-FG  403 (528)
T ss_dssp             --SSSEEGGG--TT-EEEEEEEST---TS-SS--------------EEECEEEEEEEEETTEEEEEEEEETTEEE-S-SS
T ss_pred             CCCceecHHHhcCCCeEEEEEecc---cceee--------------eecCCEEEEeeccCCCcEEEEeccCCceeec-ce
Confidence                1  12233344677888764   24443              99999999852  34  69999999999998 79


Q ss_pred             eeeccHHHHHHHhcC-----cCcceEEEEEeC---CCCeEEEEEEc
Q 005991          554 EYVAPEKIENVYAKC-----KFVLQCFIYGDS---FNSCLVAIVAV  591 (666)
Q Consensus       554 ~~v~p~eIE~~l~~~-----p~V~~~~V~g~~---~~~~~va~vv~  591 (666)
                      |+++-.+|++++.+.     -.+.+..+..+.   ....-+-++.+
T Consensus       404 Ekl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~  449 (528)
T PF03321_consen  404 EKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWEL  449 (528)
T ss_dssp             --EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEE
T ss_pred             eecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEe
Confidence            999999999999654     336676776662   23455555554

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=98.21  E-value=0.00018  Score=79.37  Aligned_cols=132  Identities=13%  Similarity=0.124  Sum_probs=77.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHh-CC-ccccCcccchhhhhhhccCCCCCCCCCccCC--ccCcEEEEEecCCCC-----
Q 005991          413 VRFMGSGASPLSPDVMDFLKVCF-GC-QVMEGYGMTETSCIISAIDKGDNLSGHVGSP--NPACEIKLVDVPEMN-----  483 (666)
Q Consensus       413 lr~i~~gG~~l~~~~~~~~~~~~-~~-~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p--~~~~~v~ivd~~~~~-----  483 (666)
                      +..++.||..   .....++..+ +. .+..+|++||+...  .+......+..++..  ..+.-+..++.++.+     
T Consensus       307 i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~g--i~~~~~~~p~~~~~~l~~~~~ffEFiP~~~~~~~~~~  381 (597)
T PLN02249        307 LDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFG--INLNPMCKPSEVSYTIMPNMAYFEFLPHNHDGDGALD  381 (597)
T ss_pred             EEEEecCChH---HHHHHHHHHcCCCccccccccccceEEE--eecCCCCCCCCcceEecCCcEEEEeeecccCCcccCC
Confidence            6667777755   4556666655 33 35689999996432  221111111112221  113334445432211     


Q ss_pred             ---C--CCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecC----CcEEEEccCCCeEEcCCee
Q 005991          484 ---Y--TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG----GRLKIIDRKKNIFKLAQGE  554 (666)
Q Consensus       484 ---~--~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~l~i~GR~~d~ikl~~G~  554 (666)
                         .  +.+.+.|..-||+|+..   .|-|.              |+.||+.++..-    -.|.|+||.+.++.+ .||
T Consensus       382 ~~~~v~l~eVe~G~~Y~lVvTT~---~GLyR--------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~-~GE  443 (597)
T PLN02249        382 ETSLVELADVEVGKEYELVITTY---AGLYR--------------YRVGDILRVTGFHNSAPQFKFIRRKNVLLSI-ESD  443 (597)
T ss_pred             CCcEecHHHcCCCCeEEEEEEcc---cceeE--------------eecCCEEEEeeccCCCcEEEEEccCCcceec-ccc
Confidence               0  11122233556777542   23332              999999998632    369999999999998 899


Q ss_pred             eeccHHHHHHHhc
Q 005991          555 YVAPEKIENVYAK  567 (666)
Q Consensus       555 ~v~p~eIE~~l~~  567 (666)
                      ++.-++++.++.+
T Consensus       444 Kl~e~~v~~Av~~  456 (597)
T PLN02249        444 KTDEADLQKAVEN  456 (597)
T ss_pred             cCCHHHHHHHHHH
Confidence            9999999998865

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.62  E-value=0.0026  Score=69.72  Aligned_cols=137  Identities=13%  Similarity=0.156  Sum_probs=78.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHh-CCccc-cCcccchhhhhhhccCCCCCCCC-CccCCccCcE-EEEEecCCCCC--
Q 005991          411 GRVRFMGSGASPLSPDVMDFLKVCF-GCQVM-EGYGMTETSCIISAIDKGDNLSG-HVGSPNPACE-IKLVDVPEMNY--  484 (666)
Q Consensus       411 ~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~-~vG~p~~~~~-v~ivd~~~~~~--  484 (666)
                      +++++|.+--..-.......++..+ |.+++ -+||+||+.+.+-..+.  ..+. .....+|+.- +..++.++++.  
T Consensus       293 P~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~--~~p~~~sy~L~p~~~yFEFip~~~~~~~~  370 (606)
T PLN02247        293 PRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPL--SDPSDVSYTLLPNMAYFEFLPVDKNNGEV  370 (606)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcC--CCccCCceeecCCcEEEEEeecCCCcccc
Confidence            5777766533333455556666555 56555 58999997543322221  1111 1223344422 34443332210  


Q ss_pred             ------------------------CCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEe----cCC
Q 005991          485 ------------------------TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWL----PGG  536 (666)
Q Consensus       485 ------------------------~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~----~dG  536 (666)
                                              +.+.+.|..-||+|+..   .|.|.              ||.||+.++.    ..-
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~---~GLYR--------------YrlGDvv~V~GF~n~~P  433 (606)
T PLN02247        371 IHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTF---TGLYR--------------YRVGDILMVTGFYNNAP  433 (606)
T ss_pred             cccccccccccccccccccCceecHHHccCCCeEEEEEEec---CceEE--------------EecCCEEEEeeecCCCc
Confidence                                    00122233456666532   23222              8999998874    334


Q ss_pred             cEEEEccCCCeEEcCCeeeeccHHHHHHHhc
Q 005991          537 RLKIIDRKKNIFKLAQGEYVAPEKIENVYAK  567 (666)
Q Consensus       537 ~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~  567 (666)
                      .|.|++|.+.+..+ .|++.+-.++-.++.+
T Consensus       434 ~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~  463 (606)
T PLN02247        434 QFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQ  463 (606)
T ss_pred             eEEEEecCCceeec-ccccCCHHHHHHHHHH
Confidence            69999999999998 8999999999888854

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.44  E-value=0.0052  Score=67.33  Aligned_cols=137  Identities=13%  Similarity=0.143  Sum_probs=77.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHh-CCccc-cCcccchhhhhhhccCCCCCCCCCc-cCCccCcE-EEEEecCCCC---
Q 005991          411 GRVRFMGSGASPLSPDVMDFLKVCF-GCQVM-EGYGMTETSCIISAIDKGDNLSGHV-GSPNPACE-IKLVDVPEMN---  483 (666)
Q Consensus       411 ~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~v-G~p~~~~~-v~ivd~~~~~---  483 (666)
                      +++++|.+-...-.......++..+ |.+++ -+|++||+.+.+-..+.  ..+..+ +..+|+.- +..++.++.+   
T Consensus       304 P~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~--~~p~~~sy~L~p~~~yFEFip~~~~~~~~  381 (612)
T PLN02620        304 PNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPL--CKPSEVSYTLIPTMAYFEFLPVHRNNGVT  381 (612)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCC--CCcccceeeecCCcEEEEEeeccCccccc
Confidence            5777665533333444555565544 56655 68999997543322221  112222 23334422 3334322110   


Q ss_pred             ------------------CCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEe----cCCcEEEE
Q 005991          484 ------------------YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWL----PGGRLKII  541 (666)
Q Consensus       484 ------------------~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~----~dG~l~i~  541 (666)
                                        .+.+.+.|..-||+|+..   .|.|.              ||.||+.++.    ..-.|.|+
T Consensus       382 ~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~---~GLyR--------------YrlGDvv~V~Gf~n~~P~~~Fv  444 (612)
T PLN02620        382 NSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTY---AGLYR--------------YRVGDVLRVAGFKNKAPQFSFI  444 (612)
T ss_pred             ccccccccccccccCccccHHHccCCCeEEEEEEec---CceEE--------------EecCCEEEEeeecCCCceEEEE
Confidence                              011122233556777542   23222              8999998874    23469999


Q ss_pred             ccCCCeEEcCCeeeeccHHHHHHHhc
Q 005991          542 DRKKNIFKLAQGEYVAPEKIENVYAK  567 (666)
Q Consensus       542 GR~~d~ikl~~G~~v~p~eIE~~l~~  567 (666)
                      +|.+.+..+ .|++.+-.++-.++.+
T Consensus       445 ~R~~~~lsi-~gEK~tE~~l~~Av~~  469 (612)
T PLN02620        445 CRKNVVLSI-DSDKTDEVELQNAVKN  469 (612)
T ss_pred             eecCceeec-ccccCCHHHHHHHHHH
Confidence            999999998 8999999999888744

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=94.37  E-value=0.26  Score=51.91  Aligned_cols=92  Identities=12%  Similarity=0.026  Sum_probs=75.7

Q ss_pred             eEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCH--hHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEE
Q 005991          112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRP--EWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAI  189 (666)
Q Consensus       112 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v  189 (666)
                      ..+|+.|+...+..+|+.|...|..+||+|.+...-+.  .-+-..+|+.++|++++|+.+. .-++-..++++.++.++
T Consensus       108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI  186 (438)
T COG1541         108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI  186 (438)
T ss_pred             eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence            46899999999999999999999999999888766221  1167889999999999999883 45667789999999999


Q ss_pred             EEccccHHHHHHhhh
Q 005991          190 FCIPQTLNTLLSFIS  204 (666)
Q Consensus       190 i~~~~~~~~~~~~~~  204 (666)
                      .+.++.+-.+.+...
T Consensus       187 ~~tps~~l~lae~~~  201 (438)
T COG1541         187 AATPSYLLYLAEEAE  201 (438)
T ss_pred             EEChHHHHHHHHHHH
Confidence            999988766655544

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=93.63  E-value=0.028  Score=46.45  Aligned_cols=40  Identities=25%  Similarity=0.183  Sum_probs=27.1

Q ss_pred             eeeeccHHHHHHHhcCcCcc-eEEEE--EeCCCCeEEEEEEcC
Q 005991          553 GEYVAPEKIENVYAKCKFVL-QCFIY--GDSFNSCLVAIVAVD  592 (666)
Q Consensus       553 G~~v~p~eIE~~l~~~p~V~-~~~V~--g~~~~~~~va~vv~~  592 (666)
                      |.||+|..||+++.++|++. +..++  ...+.+.+...|...
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~   43 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELR   43 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEES
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEEC
Confidence            78999999999999999998 43332  233335555556553

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=87.99  E-value=5.8  Score=42.66  Aligned_cols=96  Identities=15%  Similarity=0.090  Sum_probs=70.9

Q ss_pred             cCccCCc--eEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCH--hHHHHHHHHHhcCCeEEecCCCCCHHHHHHH
Q 005991          105 DGTVGGY--KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRP--EWLIVDHACSAYSYISVPLYDTLGPDAVKYV  180 (666)
Q Consensus       105 ~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~  180 (666)
                      .|.++..  ..+|..++......++..+...|+++||++....+.+.  ......++....|+..+++.... .+.+...
T Consensus        84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~  162 (422)
T TIGR02155        84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL  162 (422)
T ss_pred             CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence            4555543  34577777766677778888889999999887665442  22234677889999999988754 5778899


Q ss_pred             HHhcCceEEEEccccHHHHHH
Q 005991          181 VNHAEIEAIFCIPQTLNTLLS  201 (666)
Q Consensus       181 l~~~~~~~vi~~~~~~~~~~~  201 (666)
                      |++.++.++++.+.....+.+
T Consensus       163 i~~~~~t~l~~~Ps~l~~L~~  183 (422)
T TIGR02155       163 IQDFKPDIIMVTPSYMLNLLE  183 (422)
T ss_pred             HHHHCCCEEEEcHHHHHHHHH
Confidence            999999999999887665544

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=87.11  E-value=7.5  Score=42.16  Aligned_cols=92  Identities=13%  Similarity=0.092  Sum_probs=68.1

Q ss_pred             cCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHh--HHHHHHHHHhcCCeEEecCCCCCHHHHHHH
Q 005991          105 DGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE--WLIVDHACSAYSYISVPLYDTLGPDAVKYV  180 (666)
Q Consensus       105 ~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~  180 (666)
                      .|.++.  ...+|..++...+...+..+...|+.+||++.+..+.+..  .....+|+...|+.++|...   .+....+
T Consensus        95 SGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~  171 (445)
T TIGR03335        95 SGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRI  171 (445)
T ss_pred             CCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHH
Confidence            444443  3457899999888888888888999999999988876542  23456788899999887653   2345678


Q ss_pred             HHhcCceEEEEccccHHHH
Q 005991          181 VNHAEIEAIFCIPQTLNTL  199 (666)
Q Consensus       181 l~~~~~~~vi~~~~~~~~~  199 (666)
                      +++.++.++++.....-.+
T Consensus       172 i~~~~~t~l~~~ps~ll~L  190 (445)
T TIGR03335       172 IESYRPTGIVASVFKLLRL  190 (445)
T ss_pred             HHHhCCCEEEECHHHHHHH
Confidence            8999999998876654443

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	666
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		2e-25
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		4e-25
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-23
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-23
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-23
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		1e-22
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		3e-22
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		3e-22
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		3e-22
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		4e-22
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		8e-22
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-21
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		1e-20
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		3e-20
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		3e-20
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		3e-18
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		7e-18
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		2e-15
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		1e-13
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		3e-13
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		9e-13
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-12
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		4e-12
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		1e-11
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		1e-11
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		2e-09
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-09
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		1e-08
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-08
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		4e-08
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		5e-08
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		1e-07
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		8e-07
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-06
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		3e-06
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		3e-06
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		4e-06
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-05
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-05
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		2e-05
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		1e-04
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		5e-04
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		6e-04
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		6e-04
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		6e-04
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		6e-04
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		6e-04
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		7e-04
3dhv_A	512	Crystal Structure Of Dlta Protein In Complex With D		7e-04
3fcc_A	512	Crystal Structure Of Dlta Protein In Complex With A		7e-04

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 131/522 (25%), Positives = 208/522 (39%), Gaps = 85/522 (16%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           ++Y E+ A    + + L+  GLQ G R+        E L++  A      + +PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
              + Y +  AE + + C P   + + +  ++         VG   E L   P   G   
Sbjct: 89  LHELDYFITDAEPKIVVCDPSKRDGIAAIAAK---------VGATVETLG--PDGRG--- 134
Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
              L   + G S          +D+A I YTSGTTG  KGA L+H NL SN        +
Sbjct: 135 --SLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWR 192
Query: 294 FYPSDIYMSYLPLAHIYER--ANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVP 351
           F P D+ +  LP+ H +    A+ +     G  +   + D  K++D  A  + T+   VP
Sbjct: 193 FTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVLXGVP 250
Query: 352 RLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGG 411
             Y R+                                 Q+P          ++ +   G
Sbjct: 251 TFYTRLL--------------------------------QSP----------RLTKETTG 268
Query: 412 RVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPA 471
             R   SG++PL  D         G  V+E YG TET+   S    GD + G VG   P 
Sbjct: 269 HXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPG 328
Query: 472 CEIKLVDVPEMNYTSEDQPHPRGEIC---VRGPIVFQGYYKNEVQTREVIDGDGWLHTGD 528
              ++ D PE       +  PRG+I    V+GP VF+GY++   +T+     DG+  TGD
Sbjct: 329 VSARVTD-PETG-----KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGD 382
Query: 529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCL 585
           +G     G + I+ R K++  +  G  V P++IE+       V++  + G     F   +
Sbjct: 383 LGKIDERGYVHILGRGKDLV-ITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGV 441
Query: 586 VAIVAVDPDVLKDWAASQGIKVIYCFS-----FRANSHVIFI 622
            A+V  D     D A     +V++        F+    VIF+
Sbjct: 442 TAVVVRDKGATIDEA-----QVLHGLDGQLAKFKXPKKVIFV 478

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 198/460 (43%), Gaps = 64/460 (13%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY +V    ++I +     G+ +   + L L N PE+++   A S     +        P
Sbjct: 90  TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
             +      +  + I    + ++     I  + +   +V+V   D    S+P   G    
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDK----IKPLQNDDGVVIVCIDDNE--SVPIPEGCLRF 203
Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA----GFSL 290
           + L   +   S         P+D+  + Y+SGTTG PKG +LTH  L+++VA    G + 
Sbjct: 204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENP 263
Query: 291 MVQFYPSDIYMSYLPLAHIYE-RANQIVSVYYGVAVGFYQGDNLKLMDDL-AVLKPTIFP 348
            + F+  D+ +  LP+ HIY   +  +  +  G A+       + L+ +L    K T+ P
Sbjct: 264 NLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAP 323
Query: 349 SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER 408
            VP +   I        K+S T +  L +                               
Sbjct: 324 MVPPIVLAI-------AKSSETEKYDLSS------------------------------- 345
Query: 409 LGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIIS-----AIDKGDNLS 462
               +R + SGA+PL  ++ D +   F   ++ +GYGMTE   +++     A +     S
Sbjct: 346 ----IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKS 401
Query: 463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG 522
           G  G+     E+K+VD    +  S +QP   GEIC+RG  + +GY  N   T E ID DG
Sbjct: 402 GACGTVVRNAEMKIVDPDTGDSLSRNQP---GEICIRGHQIMKGYLNNPAATAETIDKDG 458
Query: 523 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
           WLHTGDIGL      L I+DR K + K  +G  VAP ++E
Sbjct: 459 WLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELE 497

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 148/333 (44%), Gaps = 57/333 (17%)
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSDIYMSYLPLAHIY 310
           + E +A I  +SG+TG PKG  LTH N+++  +     +   Q  P    ++ +P  H +
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGF 249
Query: 311 ERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
                +  +  G  V     F +   LK + D       + P++  + N+          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK---------- 299
Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
                                      S++ ++   + + E        + SG +PLS +
Sbjct: 300 ---------------------------SELLNKYDLSNLVE--------IASGGAPLSKE 324
Query: 427 VMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485
           V + +   F    V +GYG+TET+  I    +GD+  G  G   P  + K++D   ++  
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVID---LDTK 381
Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
               P+ RGE+CV+GP++ +GY  N   T+E+ID +GWLHTGDIG +       I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
           ++ K  +G  V P ++E+V  +   +    + G
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAG 473

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 148/333 (44%), Gaps = 57/333 (17%)
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSDIYMSYLPLAHIY 310
           + E +A I  +SG+TG PKG  LTH N+++  +     +   Q  P    ++ +P  H +
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGF 249
Query: 311 ERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
                +  +  G  V     F +   LK + D       + P++  + N+          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK---------- 299
Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
                                      S++ ++   + + E        + SG +PLS +
Sbjct: 300 ---------------------------SELLNKYDLSNLVE--------IASGGAPLSKE 324
Query: 427 VMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485
           V + +   F    V +GYG+TET+  I    +GD+  G  G   P  + K++D   ++  
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVID---LDTK 381
Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
               P+ RGE+CV+GP++ +GY  N   T+E+ID +GWLHTGDIG +       I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
           ++ K  +G  V P ++E+V  +   +    + G
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAG 473

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 148/333 (44%), Gaps = 57/333 (17%)
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSDIYMSYLPLAHIY 310
           + E +A I  +SG+TG PKG  LTH N+++  +     +   Q  P    ++ +P  H +
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGF 249
Query: 311 ERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
                +  +  G  V     F +   LK + D       + P++  + N+          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNK---------- 299
Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
                                      S++ ++   + + E        + SG +PLS +
Sbjct: 300 ---------------------------SELLNKYDLSNLVE--------IASGGAPLSKE 324
Query: 427 VMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485
           V + +   F    V +GYG+TET+  I    +GD+  G  G   P  + K++D   ++  
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVID---LDTK 381
Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
               P+ RGE+CV+GP++ +GY  N   T+E+ID +GWLHTGDIG +       I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
           ++ K  +G  V P ++E+V  +   +    + G
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAG 473

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 197/475 (41%), Gaps = 102/475 (21%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY +V    + + SGL   G+Q+G  I L+L + PE+++                  LG 
Sbjct: 51  TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLA----------------FLGA 94
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
                ++  A        P +    L+  ++     L++      E +      S VK++
Sbjct: 95  SHRGAIITAAN-------PFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVM 147
Query: 235 S---------YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
                     +    +Q   +  P     P+D+  + Y+SGTTG PKG +LTH  LI++V
Sbjct: 148 CVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSV 207
Query: 286 A----GFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVG--------FYQGDNL 333
           A    G +  + F+  D+ +  LP+ HIY   N I+    G+ VG        F  G  L
Sbjct: 208 AQQVDGDNPNLYFHSEDVILCVLPMFHIYA-LNSIM--LCGLRVGAPILIMPKFEIGSLL 264
Query: 334 KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP 393
            L++   V   +I P VP +   I                                 ++P
Sbjct: 265 GLIEKYKV---SIAPVVPPVMMSI--------------------------------AKSP 289
Query: 394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETS--- 449
               D+   + +R         + SG +PL  ++ D ++  F   ++ +GYGMTE     
Sbjct: 290 D--LDKHDLSSLR--------MIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVL 339
Query: 450 --CIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGY 507
             C+  A +  D   G  G+     E+K+VD         +QP   GEIC+RG  + +GY
Sbjct: 340 AMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP---GEICIRGDQIMKGY 396
Query: 508 YKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
             +   T   ID +GWLHTGDIG       L I+DR K + K  +G  VAP ++E
Sbjct: 397 LNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELE 450

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 188/472 (39%), Gaps = 91/472 (19%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY EV    + +  GL   G+  G R+     N    L    A      +       L P
Sbjct: 49  TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSP 108
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
             + Y++NHAE + +   P  L  + +   E+ +V   VV+   DE  P           
Sbjct: 109 KEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVM---DEKAPE---------- 155
Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM--V 292
            YL  +        P   P+      + YT+GTTG PKG V +H  L+ +    SL+   
Sbjct: 156 GYLAYEEALGEEADPVRVPE-RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT 214
Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
                D+ +  +P+ H+    N     Y    VG  Q                + P  PR
Sbjct: 215 ALSEKDVVLPVVPMFHV----NAWCLPYAATLVGAKQ----------------VLPG-PR 253
Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGR 412
           L     A +       G      FTA   +             +W  L      E  G R
Sbjct: 254 LDP---ASLVELFDGEGVT----FTAGVPT-------------VW--LALADYLESTGHR 291
Query: 413 VRFM-----GSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCII---------SAIDKG 458
           ++ +     G  A+P S  +  F ++  G +V +GYG+TETS ++          ++ + 
Sbjct: 292 LKTLRRLVVGGSAAPRS-LIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 348
Query: 459 DNLS--GHVGSPNPACEIKLVDVPEMNYTSEDQPHPR-----GEICVRGPIVFQGYYKNE 511
           + L+     G P P   +++ D        E +P P+     GE+ ++GP +  GYY NE
Sbjct: 349 EKLTLKAKTGLPIPLVRLRVAD-------EEGRPVPKDGKALGEVQLKGPWITGGYYGNE 401
Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
             TR  +  DG+  TGDI +W   G ++I DR K++ K + GE+++   +EN
Sbjct: 402 EATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLEN 452

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 14/198 (7%)
Query: 416 MGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEI 474
           + SG +PLS +V + +   F    + +GYG+TET+  I    +GD+  G VG   P  E 
Sbjct: 312 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 371
Query: 475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP 534
           K+VD+        +Q   RGE+CVRGP++  GY  N   T  +ID DGWLH+GDI  W  
Sbjct: 372 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 428
Query: 535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAV 591
                I+DR K++ K  +G  VAP ++E++  +   +    + G   D       A+V +
Sbjct: 429 DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 592 D------PDVLKDWAASQ 603
           +         + D+ ASQ
Sbjct: 488 EHGKTMTEKEIVDYVASQ 505

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 14/198 (7%)
Query: 416 MGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEI 474
           + SG +PLS +V + +   F    + +GYG+TET+  I    +GD+  G VG   P  E 
Sbjct: 312 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 371
Query: 475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP 534
           K+VD+        +Q   RGE+CVRGP++  GY  N   T  +ID DGWLH+GDI  W  
Sbjct: 372 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 428
Query: 535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAV 591
                I+DR K++ K  +G  VAP ++E++  +   +    + G   D       A+V +
Sbjct: 429 DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 592 D------PDVLKDWAASQ 603
           +         + D+ ASQ
Sbjct: 488 EHGKTMTEKEIVDYVASQ 505

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 14/198 (7%)
Query: 416 MGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEI 474
           + SG +PLS +V + +   F    + +GYG+TET+  I    +GD+  G VG   P  E 
Sbjct: 317 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 376
Query: 475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP 534
           K+VD+        +Q   RGE+CVRGP++  GY  N   T  +ID DGWLH+GDI  W  
Sbjct: 377 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 433
Query: 535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAV 591
                I+DR K++ K  +G  VAP ++E++  +   +    + G   D       A+V +
Sbjct: 434 DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 492
Query: 592 D------PDVLKDWAASQ 603
           +         + D+ ASQ
Sbjct: 493 EHGKTMTEKEIVDYVASQ 510

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 187/448 (41%), Gaps = 85/448 (18%)
Query: 181 VNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK-LISYLQL 239
           +N ++   +F   + L  +L+   ++P +  I+++  K ++        G + + +++  
Sbjct: 123 MNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-------QGFQSMYTFVTS 175
Query: 240 QSQGCSSPQPFCPP---KPEDIATICYTSGTTGTPKGAVLTHGNL---ISNVAGFSLMVQ 293
                 +   F P    + + IA I  +SG+TG PKG  L H  L    S+        Q
Sbjct: 176 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGNQ 235
Query: 294 FYPSDIYMSYLPLAH---IYERANQIVSVYYGVAV-GFYQGDNLKLMDDL----AVLKPT 345
             P    +S +P  H   ++     ++S +  V +  F +   L+ + D     A+L PT
Sbjct: 236 IAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPT 295
Query: 346 IFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI 405
           +F  + +                                         S + D+   + +
Sbjct: 296 LFSFLAK-----------------------------------------STLIDKYDLSNL 314
Query: 406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGH 464
            E        + SG +PLS +V + +   F    + +GYG+TET+  I    KGD+  G 
Sbjct: 315 HE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKGDDKPGA 366
Query: 465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL 524
           VG   P  E K+VD+        +Q   RGE+ VRGP++  GY  N   T  +ID DGWL
Sbjct: 367 VGKVVPFFEAKVVDLDTGKTLGVNQ---RGELSVRGPMIMSGYVNNPEATNALIDKDGWL 423
Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSF 581
           H+GDI  W       I+DR K++ K  +G  VAP ++E++  +   +    + G   D  
Sbjct: 424 HSGDIAYWDEDEHFFIVDRLKSLIKY-KGCQVAPAELESILLQHPNIFDAGVAGLPDDDA 482
Query: 582 NSCLVAIVAVD------PDVLKDWAASQ 603
                A+V ++         + D+ ASQ
Sbjct: 483 GELPAAVVVLEHGKTMTEKEIVDYVASQ 510

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 168/402 (41%), Gaps = 67/402 (16%)
Query: 189 IFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQ 248
           +FC  + L  +L    ++P +  IV++  +++++          + S+++       +  
Sbjct: 160 VFCSKRALQKILGVQKKLPIIQKIVILDSREDYM------GKQSMYSFIESHLPAGFNEY 213
Query: 249 PFCPP---KPEDIATICYTSGTTGTPKGAVLTHGNL---ISNVAGFSLMVQFYPSDIYMS 302
            + P    +    A I  +SG+TG PKG  LTH N+    S+        Q  P    ++
Sbjct: 214 DYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILT 273
Query: 303 YLPLAHIYERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIY 358
            +P  H +     +  +  G  +     F +   L+ + D  +    + P++   + +  
Sbjct: 274 VIPFHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK-- 331
Query: 359 AGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGS 418
                                              S + D+   + + E        + S
Sbjct: 332 -----------------------------------STLVDKYDLSNLHE--------IAS 348
Query: 419 GASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKL 476
           G +PL+ +V + +   F    + +GYG+TET+  I    +G D+  G  G   P    K+
Sbjct: 349 GGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKI 408
Query: 477 VDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGG 536
           VD+        +Q   RGE+CV+GP++ +GY  N   T  +ID DGWLH+GDI  +   G
Sbjct: 409 VDLDTGKTLGVNQ---RGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDG 465
Query: 537 RLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
              I+DR K++ K  +G  V P ++E++  +  F+    + G
Sbjct: 466 YFFIVDRLKSLIKY-KGYQVPPAELESILLQHPFIFDAGVAG 506

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 142/353 (40%), Gaps = 59/353 (16%)
Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER--A 313
           +D+A I YTSGTTG   GA+L+H NL SN        +F P D+ +  LP+ H +    A
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
           + +     G  +     D   ++D +A  + T+   VP  Y R+                
Sbjct: 215 SNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLL--------------- 257
Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
                            Q+P          ++     G +R   SG++PL  D       
Sbjct: 258 -----------------QSP----------RLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 434 CFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
             G  V+E YGMTET+   S    GD + G VG   P    ++ D PE          PR
Sbjct: 291 XTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD-PETG-----XELPR 344
Query: 494 GEIC---VRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 550
           G+I    V GP VF GY++    T      DG+  TGD+G     G + I+ R  ++  +
Sbjct: 345 GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLV-I 403
Query: 551 AQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDPDVLKDWA 600
             G  V P +IE+       V++  + G     F   + A+V  D     D A
Sbjct: 404 TGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEA 456

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 134/328 (40%), Gaps = 56/328 (17%)
Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER--A 313
           +D+A I YTSGTTG   GA+L+H NL SN        +F P D+ +  LP+ H +    A
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
           + +     G  +     D   ++D +A  + T+   VP  Y R+                
Sbjct: 215 SNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLL--------------- 257
Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
                            Q+P          ++     G +R   SG++PL  D       
Sbjct: 258 -----------------QSP----------RLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 434 CFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
             G  V+E YGMTET+   S    GD + G VG   P    ++ D PE          PR
Sbjct: 291 XTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD-PETG-----XELPR 344
Query: 494 GEIC---VRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 550
           G+I    V GP VF GY++    T      DG+  TGD+G     G + I+ R  ++  +
Sbjct: 345 GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLV-I 403
Query: 551 AQGEYVAPEKIENVYAKCKFVLQCFIYG 578
             G  V P +IE+       V++  + G
Sbjct: 404 TGGFNVYPXEIESEIDAMPGVVESAVIG 431

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 134/328 (40%), Gaps = 56/328 (17%)
Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER--A 313
           +D+A I YTSGTTG   GA+L+H NL SN        +F P D+ +  LP+ H +    A
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
           + +     G  +     D   ++D +A  + T+   VP  Y R+                
Sbjct: 215 SNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLL--------------- 257
Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
                            Q+P          ++     G +R   SG++PL  D       
Sbjct: 258 -----------------QSP----------RLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 434 CFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
             G  V+E YGMTET+   S    GD + G VG   P    ++ D PE          PR
Sbjct: 291 XTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD-PETGXEL-----PR 344
Query: 494 GEIC---VRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 550
           G+I    V GP VF GY++    T      DG+  TGD+G     G + I+ R  ++  +
Sbjct: 345 GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLV-I 403
Query: 551 AQGEYVAPEKIENVYAKCKFVLQCFIYG 578
             G  V P +IE+       V++  + G
Sbjct: 404 TGGFNVYPXEIESEIDAMPGVVESAVIG 431

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 138/339 (40%), Gaps = 49/339 (14%)
Query: 257 DIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI 316
           D A + YTSGTTG PKGAV+    L + +   +   Q+   D+ +  LPL H++     I
Sbjct: 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGI 215
Query: 317 VS-VYYGVAVG----FYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTL 371
           +  +  G +V     F      + ++D A    T+   VP +Y+RI       + A   L
Sbjct: 216 LGPLRRGGSVRHLGRFSTEGAARELNDGA----TMLFGVPTMYHRI----AETLPADPEL 267
Query: 372 REKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL 431
            + L  A                                   R + SG++ L     + +
Sbjct: 268 AKALAGA-----------------------------------RLLVSGSAALPVHDHERI 292
Query: 432 KVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPH 491
               G +V+E YGMTET    S    G+  +G VG P P  E++LV+       + D   
Sbjct: 293 AAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDG-E 351
Query: 492 PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA 551
             GEI VRGP +F  Y      T      DG+  TGD+ +  P G ++I+ RK      +
Sbjct: 352 SVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS 411
Query: 552 QGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVA 590
            G  +   +IEN   +   V +  + G+        IVA
Sbjct: 412 GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVA 450

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 109/483 (22%), Positives = 190/483 (39%), Gaps = 68/483 (14%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           MTY +++A        L   G+ KG R+ L + N  E+  + +  +    ++VP+   L 
Sbjct: 44  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
              V ++++ +  + +             I   PS  +I  +  + +   ++    G   
Sbjct: 104 APEVSFILSDSGSKVV-------------IYGAPSAPVIDAIRAQADPPGTVTDWIGADS 150
Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
           ++  +L+S     P   C    +D   I YTSGTTG PKG V TH ++ S  + ++  + 
Sbjct: 151 LAE-RLRSAAADEPAVEC--GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207
Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVA-VGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
               D  +  LP+ H+      I S   GV  +   Q D  K+   +   +  I  +VP 
Sbjct: 208 VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPA 267
Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGR 412
           + N +                                 Q P          +  E     
Sbjct: 268 ILNFMR--------------------------------QVP----------EFAELDAPD 285
Query: 413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPAC 472
            R+  +G +P+ P+ +  +      +V++GY +TE SC    +   ++     GS   A 
Sbjct: 286 FRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTE-SCGGGTLLLSEDALRKAGSAGRAT 343
Query: 473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLW 532
                DV         + H  GE+ ++  I+ + Y+     TR+  D +GW  TGDIG  
Sbjct: 344 --MFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEI 400
Query: 533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIV 589
              G L I DR K++  ++ GE V P +IE+V      V +  + G   + +     AIV
Sbjct: 401 DDEGYLYIKDRLKDMI-ISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV 459
Query: 590 AVD 592
             D
Sbjct: 460 VAD 462

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 136/323 (42%), Gaps = 44/323 (13%)
Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ 315
           +DIA   Y+SG+TG PKG V TH NL            ++ +++Y    P+  I E  N 
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTHANL------------YWTAELYAK--PILGIAE--ND 226
Query: 316 IVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKL 375
           +V     +   +  G+ L             FP        +  G T  + A     + +
Sbjct: 227 VVFSAAKLFFAYGLGNGLT------------FP--------LSVGATAILMAERPTADAI 266
Query: 376 FTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF 435
           F  A   + +  V    P+   + LV   +  R    +R   S    L  ++ +     F
Sbjct: 267 F--ARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF 324
Query: 436 GCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGE 495
           GC++++G G TE   I  +   G    G  G P P  EI+L D  E  +   D     G+
Sbjct: 325 GCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRD--EAGHAVPDG--EVGD 380
Query: 496 ICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY 555
           + ++GP     Y+ N  ++R    G+ W+ +GD    LP G      R  ++ K++ G+Y
Sbjct: 381 LYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQY 438
Query: 556 VAPEKIENVYAKCKFVLQCFIYG 578
           V+P ++E V  +   VL+  + G
Sbjct: 439 VSPVEVEMVLVQHDAVLEAAVVG 461

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/418 (21%), Positives = 161/418 (38%), Gaps = 64/418 (15%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           MTY +++A        L   G+ KG R+ L + N  E+  + +  +    ++VP+   L 
Sbjct: 30  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
              V ++++ +  + +             I   PS  +I  +  + +   ++    G   
Sbjct: 90  APEVSFILSDSGSKVV-------------IYGAPSAPVIDAIRAQADPPGTVTDWIGADS 136
Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
           ++  +L+S     P   C    +D   I YTSGTTG PKG V TH ++ S  + ++  + 
Sbjct: 137 LAE-RLRSAAADEPAVEC--GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 193
Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVA-VGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
               D  +  LP+ H+      I S   GV  +   Q D  K+   +   +  I  +VP 
Sbjct: 194 VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPA 253
Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGR 412
           + N +                                 Q P          +  E     
Sbjct: 254 ILNFMR--------------------------------QVP----------EFAELDAPD 271
Query: 413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPAC 472
            R+  +G +P+ P+ +  +      +V++GY +TE SC    +   ++     GS   A 
Sbjct: 272 FRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTE-SCGGGTLLLSEDALRKAGSAGRAT 329
Query: 473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIG 530
                DV         + H  GE+ ++  I+ + Y+     TR+  D +GW  TGDIG
Sbjct: 330 --MFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIG 384

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 156/392 (39%), Gaps = 71/392 (18%)
Query: 188 AIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSP 247
           A+F     LNT   F++E  S+ ++ ++    EH                 LQ       
Sbjct: 133 ALFSGDDFLNT---FVTEHSSIRVVQLLNDSGEH----------------NLQDAINHPA 173
Query: 248 QPF-CPPKPED-IATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLP 305
           + F   P P D +A    + GTTGTPK    TH +   +V     + QF     Y+  +P
Sbjct: 174 EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIP 233
Query: 306 LAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
            AH Y  ++       G    F  G  + L  D +      FP + +    + A +  AV
Sbjct: 234 AAHNYAMSSP------GSLGVFLAGGTVVLAADPSAT--LCFPLIEKHQVNVTALVPPAV 285
Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
                    L+        QA++ G++ +++                ++ +  G + LS 
Sbjct: 286 S--------LWL-------QALIEGESRAQL--------------ASLKLLQVGGARLSA 316
Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV-GSPN-PACEIKLVDVPEMN 483
            +   +    GCQ+ + +GM E     + +D       H  G P  P  E+ + D     
Sbjct: 317 TLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD----- 371
Query: 484 YTSEDQPHPRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
             +E  P P+GE+     RGP  F+GYYK+        D +G+  +GD+    P G + +
Sbjct: 372 --AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITV 429
Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVL 572
             R+K+      GE +A E+IEN+  +   V+
Sbjct: 430 QGREKDQINRG-GEKIAAEEIENLLLRHPAVI 460

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 104/459 (22%), Positives = 177/459 (38%), Gaps = 73/459 (15%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           +Y E+      + +G    G+Q+  R+ + L N  E+  V  A      + V    +   
Sbjct: 52  SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTL------LSFISEIPSVHLIVVVGGKDEHLPSLPST 228
             + Y    AE  A + IP   +            S++P++  I+V G  +E LP     
Sbjct: 112 SEITYFCEFAEA-AAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLP----- 165
Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
                     L ++    P+     K  D+A +  + G+TG  K    TH + I ++   
Sbjct: 166 -------LEDLHTEPVKLPEV----KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRS 214
Query: 289 SLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFP 348
             +     S +Y++ LP+AH Y  ++       GV    Y G  +       VL P+  P
Sbjct: 215 VEVCWLDHSTVYLAALPMAHNYPLSSP------GVLGVLYAGGRV-------VLSPSPSP 261
Query: 349 --SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIR 406
             + P L  R    IT  V     +    +  A +S++  + S Q               
Sbjct: 262 DDAFP-LIEREKVTITALVPPLAMV----WMDAASSRRDDLSSLQV-------------- 302
Query: 407 ERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV- 465
                    +  G +  S +    +K  FGC + + +GM E     + +D  + +  +  
Sbjct: 303 ---------LQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQ 353
Query: 466 GSP-NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL 524
           G P +P  E ++ D    ++  + +P   G +  RGP   +GYYK E         DG+ 
Sbjct: 354 GKPMSPYDESRVWD----DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFY 409
Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
            TGDI      G + +  R K+      GE VA E++EN
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRG-GEKVAAEEVEN 447

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 107/480 (22%), Positives = 193/480 (40%), Gaps = 84/480 (17%)
Query: 118 EVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAV 177
           E+    K++ SG+   G++KG  +G+ + N  +++   +A    +   VP+        +
Sbjct: 57  EICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFEL 116
Query: 178 KYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL 237
           ++++N +E      +   L      + E   V  + VVGG+   L  +   SG +    +
Sbjct: 117 EHILNDSEA-TTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEV-XDSGSEDFENV 174
Query: 238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPS 297
           ++  +             ED+A I YT GTTG PKG  LTH NL +N    ++       
Sbjct: 175 KVNPE-------------EDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHX 221
Query: 298 DIYMSYLPLAHIYERANQIVSVYYG---VAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLY 354
           D  +   P  H  E     + V  G   V  G +  +   L +++   K T   +VP   
Sbjct: 222 DTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQE--XLAENIEKYKGTFSWAVPPAL 279
Query: 355 NRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR 414
           N     + N +++S     K +  +Y                                ++
Sbjct: 280 NV----LVNTLESSN----KTYDWSY--------------------------------LK 299
Query: 415 FMGSGASPLSPDVMDFL-----KVCFGCQVMEG--YGMTETSCIISA-----IDKGDNLS 462
              +GA P++P +++ L     + C   ++     +G TE    ++      +DK    S
Sbjct: 300 VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPPLRLDK----S 355
Query: 463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---- 518
              G P    E+K++ + +       +    GEI +RGP +F+GY+K E + +E      
Sbjct: 356 TTQGVPXSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDE 412
Query: 519 DGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
            G  +  TGD+G     G L   DR K + K  +G  +AP ++E +  K + V    + G
Sbjct: 413 KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLXKHEAVXDVAVIG 471

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 121/526 (23%), Positives = 193/526 (36%), Gaps = 114/526 (21%)
Query: 122 ARKEIGSG-LLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG------- 173
           AR E G+  LL   L+KG R+ L      E++    AC     ++VPL    G       
Sbjct: 56  ARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDSW 115
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
              ++ ++   +  AI    + L  + +   + P +H++           +LP       
Sbjct: 116 SAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVL-----SHAWFKALPEAD---- 166
Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL-MV 292
              + LQ            P P DIA + YTSG+T  P+G ++TH  + +N+   S   +
Sbjct: 167 ---VALQR-----------PVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGI 212
Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
           +  P D  +S+LP  H       +V             D L+  D         F   P 
Sbjct: 213 KLRPGDRCVSWLPFYH----DXGLVGFLLTPVATQLSVDYLRTQD---------FAXRPL 259
Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGR 412
            + ++ +     V  +     +L     N K  A    +     W               
Sbjct: 260 QWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLA----ELDLSCW--------------- 300
Query: 413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEG------YGMTETSCIISAIDKG-------- 458
            R  G GA P+S + +     CF     +       YG+ E +  +S  D+         
Sbjct: 301 -RVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAENALAVSFSDEASGVVVNEV 359
Query: 459 --DNLSGHVGSPNPACEIKLVD--------VPEMNYTSEDQP------HPRGEICVRGPI 502
             D L     +  P  E + V         +PE      ++          G IC+ GP 
Sbjct: 360 DRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGXPVAERVVGHICISGPS 419
Query: 503 VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG-----GRLK--IIDRKKNIFKLAQGEY 555
           +  GY+ ++V   E I   GWL TGD+G  L G     GR+K  II R +NI+     EY
Sbjct: 420 LXSGYFGDQVSQDE-IAATGWLDTGDLGYLLDGYLYVTGRIKDLIIIRGRNIWP-QDIEY 477
Query: 556 VAPEK--------IENVYAKCKFVL--QCFIYGDSFNSCLVAIVAV 591
           +A ++        I  V A+ K +L  QC I  +     L+  +A 
Sbjct: 478 IAEQEPEIHSGDAIAFVTAQEKIILQIQCRISDEERRGQLIHALAA 523

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 175/459 (38%), Gaps = 73/459 (15%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           +Y E+      + +G    G+Q+  R+ + L N  E+  V  A      + V    +   
Sbjct: 52  SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTL------LSFISEIPSVHLIVVVGGKDEHLPSLPST 228
             + Y    AE  A + IP   +            S++P++  I+V G  +E LP     
Sbjct: 112 SEITYFCEFAEA-AAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLP----- 165
Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
                     L ++    P+     K  D+A +  + G+TG  K    TH + I ++   
Sbjct: 166 -------LEDLHTEPVKLPEV----KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRS 214
Query: 289 SLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFP 348
             +     S +Y++ LP AH Y  ++       GV    Y G  +       VL P+  P
Sbjct: 215 VEVCWLDHSTVYLAALPXAHNYPLSSP------GVLGVLYAGGRV-------VLSPSPSP 261
Query: 349 --SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIR 406
             + P L  R    IT  V     +    +  A +S++  + S Q               
Sbjct: 262 DDAFP-LIEREKVTITALVPPLAXV----WXDAASSRRDDLSSLQV-------------- 302
Query: 407 ERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV- 465
                    +  G +  S +    +K  FGC + + +G  E     + +D  + +  +  
Sbjct: 303 ---------LQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQ 353
Query: 466 GSP-NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL 524
           G P +P  E ++ D    ++  + +P   G +  RGP   +GYYK E         DG+ 
Sbjct: 354 GKPXSPYDESRVWD----DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFY 409
Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
            TGDI      G + +  R K+      GE VA E++EN
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRG-GEKVAAEEVEN 447

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 112/518 (21%), Positives = 200/518 (38%), Gaps = 91/518 (17%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K  T+ ++     +  +  + HG+ KG  + L L +R ++            I+VP    
Sbjct: 85  KIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHM 144
Query: 172 LGPDAVKYVVNHAEIEAIFCI-----PQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLP 226
           L    + Y +  A ++ I CI     P+ ++   +   +IP       VGG         
Sbjct: 145 LKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKK--AKVGGD-------V 195
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA 286
               +     L+  S     P      K EDI  + ++SGT G PK  ++ H N  +   
Sbjct: 196 LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPK--MVEHDN--TYPL 251
Query: 287 GFSLMVQFYPS--DIYMSYLPLAHIYERA------NQIVSVYYGVAVGFYQGDNLK---L 335
           G  L  +++ +  D  + Y      + +        Q ++   G AV  Y  D  +   +
Sbjct: 252 GHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIA---GCAVFVYDYDRFEAKNM 308
Query: 336 MDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK 395
           ++  +    T F + P +Y  +             ++E L    +++ K A+V+G+    
Sbjct: 309 LEKASKYGVTTFCAPPTIYRFL-------------IKEDLSHYNFSTLKYAVVAGE---- 351
Query: 396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAI 455
                                     PL+P+V +      G ++MEG+G TET   I+  
Sbjct: 352 --------------------------PLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF 385
Query: 456 DKGDNLSGHVGSPNPACEIKLVDVP-EMNYTSEDQPHPRGEICVR----GPIVFQGYYKN 510
              +   G +G P P  +I+L+D    +    E+     GEI +      P+    +Y  
Sbjct: 386 PWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE-----GEIVINTMEGKPVGLFVHYGK 440
Query: 511 EVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKF 570
           + +  E    DG+ HTGD+      G L  + R  +I K + G  V P ++E+   +   
Sbjct: 441 DPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTS-GYKVGPFEVESALIQHPA 499
Query: 571 VLQCFIYG--DSFNSCLVAIVAVDPDVLKDWAASQGIK 606
           VL+C I G  D     ++    V   + KD+  S  +K
Sbjct: 500 VLECAITGVPDPVRGQVIKATIV---LTKDYTPSDSLK 534

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 140/335 (41%), Gaps = 60/335 (17%)
Query: 251 CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY 310
            P K  D+A + YTSGTTG PKG +L H        G S +  F+ + + ++        
Sbjct: 177 VPSKSTDLAYVIYTSGTTGNPKGTMLEH-------KGISNLKVFFENSLNVTE------K 223
Query: 311 ERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGT 370
           +R  Q  S+ +                           SV  ++  +  G +  +    T
Sbjct: 224 DRIGQFASISFDA-------------------------SVWEMFMALLTGASLYIILKDT 258
Query: 371 LREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDF 430
           + + +    Y ++K+  V    P+      V +   ER+   ++ + +  S  SP +++ 
Sbjct: 259 INDFVKFEQYINQKEITVITLPPT-----YVVHLDPERILS-IQTLITAGSATSPSLVNK 312
Query: 431 LKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH---VGSPNPACEIKLVDVPEMNYTSE 487
            K       +  YG TET+   +         GH   +G+P    +I +VD   +   S 
Sbjct: 313 WKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSV 369
Query: 488 DQPHPRGEICVRGPIVFQGYYKN-EVQTREVID-----GDGWLHTGDIGLWLPGGRLKII 541
            +    GE+C+ G  + +GY+K  E+ +++ +D     G+    TGD   WL  G ++ +
Sbjct: 370 GEA---GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL 426
Query: 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
            R  N  K+ +G  V  E++E++  K  ++ +  +
Sbjct: 427 GRIDNQVKI-RGHRVELEEVESILLKHMYISETAV 460

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 178/493 (36%), Gaps = 93/493 (18%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI----VDHACSAYSYISVPLY 169
           ++Y E+      I   L  HG  KG  + LY     E +I    V  A +AY    +P+ 
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAY----LPVD 545
Query: 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
             L  D + Y++  +   A  C+                    +      E    LP T 
Sbjct: 546 PKLPEDRISYMLADS---AAACL--------------------LTHQEMKEQAAELPYT- 581
Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS 289
           G  L    Q + +  +S  P     P D A I YTSGTTG PKG + TH N+   V    
Sbjct: 582 GTTLFIDDQTRFEEQAS-DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVD 640
Query: 290 LMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPS 349
            M  F   D ++S              VS Y   A  F    ++     L +        
Sbjct: 641 YMA-FSDQDTFLS--------------VSNYAFDAFTFDFYASMLNAARLIIADEHTLLD 685
Query: 350 VPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERL 409
             RL + I     N + A+  L   L  A  +  K                         
Sbjct: 686 TERLTDLILQENVNVMFATTALFNLLTDAGEDWMK------------------------- 720
Query: 410 GGR-VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAI---DKGDNLSG-H 464
           G R + F G  AS   P V   L++    +++  YG TE +   +A    D  D++S   
Sbjct: 721 GLRCILFGGERAS--VPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLP 778
Query: 465 VGSPNPACEIKLVDVPEMNYTSEDQPH-PRGEICVRGPIVFQGYYKNEVQTREVI----- 518
           +G P     I    V  +N  S+ QP    GE+C+ G  V +GY      T+E       
Sbjct: 779 IGKP-----ISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPF 833
Query: 519 -DGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY 577
             G+    TGD+  WLP G ++   R  +  K+ +G  +  E+IE    +   V    + 
Sbjct: 834 KPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVV 892
Query: 578 GDSFNSCLVAIVA 590
            D   S   +I A
Sbjct: 893 ADRHESGDASINA 905

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 97/442 (21%), Positives = 170/442 (38%), Gaps = 79/442 (17%)
Query: 172 LGPDAVKYVVNHAEIEAIFCIPQTLNTLL--SFISEI---PSVHLIVVVGGKDEHLPSLP 226
           + P++   V+    +  +  +P  LN  L  + ++E+     +   V+  G+        
Sbjct: 60  VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ 119
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPP------KPEDIATICYTSGTTGTPKGAVLTHGN 280
           S SG ++I    L   G   P  + PP      +P   A I YTSGTTG PK A++    
Sbjct: 120 SGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 281 LISNVAGFSLMVQFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKL-MD 337
             S V   S  V       ++ +  +PL H+               VGF+      L +D
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD 222
Query: 338 DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW 397
              V+     P                V A   ++++  T+ + +           +   
Sbjct: 223 GTYVVVEEFRP----------------VDALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266
Query: 398 DRLVFNKIRERLGGRVRFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAID 456
             L  + +R      V F G+      PD V++ +      + + GYG TE    ++++ 
Sbjct: 267 SSLKLDSLRH-----VTFAGA----TMPDAVLETVHQHLPGEKVNGYGTTEA---MNSLY 314
Query: 457 KGDNLSGHVGSPNPACEIKLV----DVPEMNYTSEDQPHPRGEICVRGP-IVFQGYYKNE 511
                +G   +P    E+++V     V E+    E+     GE+ V      F GY    
Sbjct: 315 MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----GELIVAASDSAFVGYLNQP 369
Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFV 571
             T E +  DGW  T D+ +W P G ++I+ R  ++  ++ GE + P +IE V      V
Sbjct: 370 QATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGV 427
Query: 572 LQCFI-------YGDSFNSCLV 586
            +  +       +G S  +C+V
Sbjct: 428 TEVVVIGLADQRWGQSVTACVV 449

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
Query: 434 CFGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGSP-NPACEIKLVDVPEMNYTSEDQPH 491
              C++ + +GM E     + +D  D  +    G P +   EIK+VD        + +  
Sbjct: 330 VLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-------EQYREV 382
Query: 492 PRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIF 548
           P GEI     RGP  F GYY++     +V D D + ++GD+    P G L+++ R K+  
Sbjct: 383 PEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQI 442
Query: 549 KLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIV 589
               GE +A E+IE      K +L   ++ +  ++ LVAIV
Sbjct: 443 NRG-GEKIASEEIE------KLIL---LHPEVMHAALVAIV 473

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 31/214 (14%)
Query: 424 SPDVMD-FLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEM 482
           +P+ ++ F   C        +G +ETS + S      +     G P     + +VD    
Sbjct: 282 TPETIERFEATCPNATFWATFGQSETSGL-STFAPYRDRPKSAGRPLFWRTVAVVD---- 336
Query: 483 NYTSEDQPHPRGE---ICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
              +ED+P P GE   I +RGP VF+GY+ N   T+     +GW HTGD+G +   G L 
Sbjct: 337 ---AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDADGYLF 392
Query: 540 IIDR--KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDP- 593
              R  +K + K   GE V P ++E    +   +    + G     ++  + A+    P 
Sbjct: 393 YAGRAPEKELIKTG-GENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG 451
Query: 594 -----DVLKDWAASQGIKVIYCFSFRANSHVIFI 622
                D L ++ AS          ++   HV+F+
Sbjct: 452 ESIAADALAEFVAS------LIARYKKPKHVVFV 479

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 169/442 (38%), Gaps = 79/442 (17%)
Query: 172 LGPDAVKYVVNHAEIEAIFCIPQTLNTLL--SFISEI---PSVHLIVVVGGKDEHLPSLP 226
           + P++   V+    +  +  +P  LN  L  + ++E+     +   V+  G+        
Sbjct: 60  VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ 119
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPP------KPEDIATICYTSGTTGTPKGAVLTHGN 280
           S SG ++I    L   G   P  + PP      +P   A I YTSGTTG PK A++    
Sbjct: 120 SGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 281 LISNVAGFSLMVQFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKL-MD 337
             S V   S  V       ++ +  +PL H+               VGF+      L +D
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD 222
Query: 338 DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW 397
              V+     P                V A   ++++  T+ + +           +   
Sbjct: 223 GTYVVVEEFRP----------------VDALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266
Query: 398 DRLVFNKIRERLGGRVRFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAID 456
             L  + +R      V F G+      PD V++ +      + +  YG TE    ++++ 
Sbjct: 267 SSLKLDSLRH-----VTFAGA----TMPDAVLETVHQHLPGEKVNAYGTTEA---MNSLY 314
Query: 457 KGDNLSGHVGSPNPACEIKLV----DVPEMNYTSEDQPHPRGEICVRGP-IVFQGYYKNE 511
                +G   +P    E+++V     V E+    E+     GE+ V      F GY    
Sbjct: 315 MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----GELIVAASDSAFVGYLNQP 369
Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFV 571
             T E +  DGW  T D+ +W P G ++I+ R  ++  ++ GE + P +IE V      V
Sbjct: 370 QATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGV 427
Query: 572 LQCFI-------YGDSFNSCLV 586
            +  +       +G S  +C+V
Sbjct: 428 TEVVVIGLADQRWGQSVTACVV 449

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 119/517 (23%), Positives = 196/517 (37%), Gaps = 121/517 (23%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           TY ++    K I + L   G + G R+ L        +     C     I+VP+Y    P
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY----P 97
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
            A + +++ A+       P  +  +   I +  +           + L + P    +  I
Sbjct: 98  PAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTA-----------DELNTNPKFLKIPAI 146
Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF 294
           +   ++    SS QP    K  DIA + YTSG+T  PKG  ++H NL+ N+    +   F
Sbjct: 147 ALESIELNRSSSWQP-TSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLN--KIFTSF 203
Query: 295 YPSD--IYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
           + +D  I  S+LP  H                             D  ++   + P    
Sbjct: 204 HXNDETIIFSWLPPHH-----------------------------DXGLIGCILTP---- 230
Query: 353 LYNRIYAGITNAVKAS--GTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLG 410
               IY GI  A+  S    L+  L    + +K +A +SG +P+  +D  V  +IRE   
Sbjct: 231 ----IYGGI-QAIXXSPFSFLQNPLSWLKHITKYKATISG-SPNFAYDYCV-KRIREEKK 283
Query: 411 GRVRFMG-----SGASPLSPDVMD-----FLKVCFGCQVM-EGYGMTETSCIISAIDKG- 458
             +         +GA P+  +  +     F +  F  +     YG+ E + +++    G 
Sbjct: 284 EGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGS 343
Query: 459 ---------------------DNLSGH---VGSPNPACEIKLVDVPEMNYTSEDQPHPRG 494
                                DN  G    V S NP  E+K++D   +     DQ    G
Sbjct: 344 SYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQ---VG 400
Query: 495 EICVRGPIVFQGYYKNEVQTREVIDGD--------GWLHTGDIGLWLPGGRLKIIDRKKN 546
           EI V+   V +GY+    +TR    G          +L TGD+G +L    L +  R K+
Sbjct: 401 EIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG-FLHENELYVTGRIKD 459
Query: 547 IFKLAQGEYVAPEKIE---------NVYAKC-KFVLQ 573
           +  +  G+   P+ IE         +V  KC  FV+Q
Sbjct: 460 LI-IIYGKNHYPQDIEFSLXHSPLHHVLGKCAAFVIQ 495

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 143/382 (37%), Gaps = 74/382 (19%)
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPP------KPEDIATICYTSGTTGTPKGAVLTHGN 280
           S SG ++I    L   G   P  + PP      +P   A I YTSGTTG PK A++    
Sbjct: 120 SGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 281 LISNVAGFSLMVQFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKL-MD 337
             S V   S  V       ++ +   PL H+               VGF+      L +D
Sbjct: 178 AESRVLFXSTQVGLRHGRHNVVLGLXPLYHV---------------VGFFAVLVAALALD 222
Query: 338 DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW 397
              V+     P                V A   ++++  T+ + +           +   
Sbjct: 223 GTYVVVEEFRP----------------VDALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266
Query: 398 DRLVFNKIRERLGGRVRFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAID 456
             L  + +R      V F G+      PD V++ +      + +  YG TE     +++ 
Sbjct: 267 SSLKLDSLRH-----VTFAGA----TXPDAVLETVHQHLPGEKVNIYGTTEAX---NSLY 314
Query: 457 KGDNLSGHVGSPNPACEIKLV----DVPEMNYTSEDQPHPRGEICVRGP-IVFQGYYKNE 511
                +G   +P    E+++V     V E+    E+     GE+ V      F GY    
Sbjct: 315 XRQPKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEE-----GELIVAASDSAFVGYLNQP 369
Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFV 571
             T E +  DGW  T D+ +W P G ++I+ R  +   ++ GE + P +IE V      V
Sbjct: 370 QATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDXI-ISGGENIHPSEIERVLGTAPGV 427
Query: 572 LQCFI-------YGDSFNSCLV 586
            +  +       +G S  +C+V
Sbjct: 428 TEVVVIGLADQRWGQSVTACVV 449

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 99/442 (22%), Positives = 174/442 (39%), Gaps = 92/442 (20%)
Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDT-LGPDAVKYVVNHAEIEAIFC-IPQTLN 197
           R+GLY+ N  + +I+ HAC   + I + + +T L P+ +   +   +++ IFC +P  L 
Sbjct: 50  RVGLYIDNSIQSIILIHAC-WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELR 108
Query: 198 TLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKP-- 255
                  +I S+  I   G        L +T G+          Q  +S +   P +   
Sbjct: 109 GF-----QIVSLDDIEFAGRDITTNGLLDNTMGI----------QYDTSNETVVPKESPS 153
Query: 256 ---------EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPL 306
                    +DIA+I +TSGTTG  K    T  N  ++  G    + F     ++S LP+
Sbjct: 154 NILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPI 213
Query: 307 AHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
            HI   +  + +V  G  V     D       L ++K           N     I+   +
Sbjct: 214 YHISGLSVLLRAVIEGFTVRIV--DKFNAEQILTMIK-----------NERITHISLVPQ 260
Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
               L ++     YN +K  +                               G + LS  
Sbjct: 261 TLNWLMQQGLHEPYNLQKILL-------------------------------GGAKLSAT 289
Query: 427 VMDFLKVCFGCQVMEGYGMTET-SCIISAIDKGDNLS-GHVGSPNPACEIKLVDVPEMNY 484
           +++   + +   +   +GMTET S  ++A  +  +     VG P+   ++K+        
Sbjct: 290 MIE-TALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKI-------- 340
Query: 485 TSEDQPHPRGEICVRGPIVFQGY-YKNEVQ-TREVIDGDGWLHTGDIGLWLPGGRLKIID 542
                    GE+ ++G  V  GY Y  ++  T E    +G+ +TGDI      G + I D
Sbjct: 341 -KNPNKEGHGELMIKGANVMNGYLYPTDLTGTFE----NGYFNTGDIAEIDHEGYVMIYD 395
Query: 543 RKKNIFKLAQGEYVAPEKIENV 564
           R+K++  ++ GE + P +IE V
Sbjct: 396 RRKDLI-ISGGENIYPYQIETV 416

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 96/455 (21%), Positives = 171/455 (37%), Gaps = 75/455 (16%)
Query: 134 GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIP 193
           GLQ+G R+ + L   PEW +V   C     I +P    +    + Y +  ++ +AI    
Sbjct: 95  GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 194 QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPP 253
           + +  + +  SE PS+ + ++V  K        S  G   +++ +L ++  S+       
Sbjct: 155 EVIQEVDTVASECPSLRIKLLVSEK--------SCDG--WLNFKKLLNE-ASTTHHCVET 203
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA 313
             ++ + I +TSGT+G PK A  ++ +L       +       SDI  +      I    
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNIL 263
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
             ++  +   A  F     L   D L +LK     S P     I + +   +     L++
Sbjct: 264 CSLMEPWALGACTFVH--LLPKFDPLVILK--TLSSYP-----IKSMMGAPIVYRMLLQQ 314
Query: 374 KLFTAAYNSKKQAIVSGQT--PSKM--WDRLVFNKIRERLGGR---VRFMGSGASPLSPD 426
            L +  +   +  +  G++  P  +  W       IRE  G     +  M S    + P 
Sbjct: 315 DLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPG 374
Query: 427 VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS 486
            M     C+  Q+++              DKG+ L                         
Sbjct: 375 YMGTAASCYDVQIID--------------DKGNVLP------------------------ 396
Query: 487 EDQPHPRGEICVR-GPI----VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII 541
              P   G+I +R  PI    +F GY  N  +T   I GD WL  GD G+    G  + +
Sbjct: 397 ---PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFM 452
Query: 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
            R  +I   + G  + P ++EN   +   V++  +
Sbjct: 453 GRADDIIN-SSGYRIGPSEVENALMEHPAVVETAV 486

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 96/455 (21%), Positives = 171/455 (37%), Gaps = 75/455 (16%)
Query: 134 GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIP 193
           GLQ+G R+ + L   PEW +V   C     I +P    +    + Y +  ++ +AI    
Sbjct: 95  GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 194 QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPP 253
           + +  + +  SE PS+ + ++V  K        S  G   +++ +L ++  S+       
Sbjct: 155 EVIQEVDTVASECPSLRIKLLVSEK--------SCDG--WLNFKKLLNE-ASTTHHCVET 203
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA 313
             ++ + I +TSGT+G PK A  ++ +L       +       SDI  +      I    
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNIL 263
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
             ++  +   A  F     L   D L +LK     S P     I + +   +     L++
Sbjct: 264 CSLMEPWALGACTFVH--LLPKFDPLVILK--TLSSYP-----IKSMMGAPIVYRMLLQQ 314
Query: 374 KLFTAAYNSKKQAIVSGQT--PSKM--WDRLVFNKIRERLGGR---VRFMGSGASPLSPD 426
            L +  +   +  +  G++  P  +  W       IRE  G     +  M S    + P 
Sbjct: 315 DLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPG 374
Query: 427 VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS 486
            M     C+  Q+++              DKG+ L                         
Sbjct: 375 YMGTAASCYDVQIID--------------DKGNVLP------------------------ 396
Query: 487 EDQPHPRGEICVR-GPI----VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII 541
              P   G+I +R  PI    +F GY  N  +T   I GD WL  GD G+    G  + +
Sbjct: 397 ---PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFM 452
Query: 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
            R  +I   + G  + P ++EN   +   V++  +
Sbjct: 453 GRADDIIN-SSGYRIGPSEVENALMEHPAVVETAV 486

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 437 CQVMEGYGMTETSCIISAIDKGDNLSGH-----VGSPNPACEIKLVDVPEMNYTSEDQPH 491
            +++  YG TE +  +SAI+    +  +     +G P P     ++D      +S +Q  
Sbjct: 291 AKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ-- 348
Query: 492 PRGEICVRGPIVFQGYYKNEVQTRE---VIDGDGWLHTGDIG------LWLPGGRL 538
             GEI V GP V +GY  N  +T E      G    HTGDIG      + L GGRL
Sbjct: 349 --GEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRL 402

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 504 FQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
           F GY      T E +  DGW  T D+ +W P G ++I+ R  ++  ++ GE + P +IE 
Sbjct: 362 FVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIER 419
Query: 564 VYAKCKFVLQCFI-------YGDSFNSCLV 586
           V      V +  +       +G S  +C+V
Sbjct: 420 VLGTAPGVTEVVVIGLADQRWGQSVTACVV 449

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 504 FQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
           F GY      T E +  DGW  T D+ +W P G ++I+ R  ++  ++ GE + P +IE 
Sbjct: 362 FVGYLNQPEATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIER 419
Query: 564 VYAKCKFVLQCFI-------YGDSFNSCLV 586
           V      V +  +       +G S  +C+V
Sbjct: 420 VLGTAPGVTEVVVIGLADQRWGQSVTACVV 449

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 504 FQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
           F GY      T E +  DGW  T D+ +W P G ++I+ R  ++  ++ GE + P +IE 
Sbjct: 362 FVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVPDMI-ISGGENIHPSEIER 419
Query: 564 VYAKCKFVLQCFI-------YGDSFNSCLV 586
           V      V +  +       +G S  +C+V
Sbjct: 420 VLGTAPGVTEVVVIGLADQRWGQSVTACVV 449

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLA 307
           P  ED+A + YTSGTTG PKG  + H N+++ +AG   +  F   D ++ +  L+
Sbjct: 172 PGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLS 226

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K ++Y E+        + LL  G++KG  + +Y+   PE  +   AC+    +   ++  
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
             P+AV         + V+   E + A   IP   N   +  +  + SV  ++V+   G 
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
           D     +    G  L  +  L  +     QP      ED   I YTSG+TG PKG + T 
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
           G  L+     F  +  ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 133/355 (37%), Gaps = 60/355 (16%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K ++Y E+        + LL  G++KG  + +Y+   PE  +   AC+    +   ++  
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
             P+AV         + V+   E + A   IP   N   +  +  + SV  ++V+   G 
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
           D     +    G  L  +  L  +     QP      ED   I YTSG+TG PKG + T 
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMD 337
           G  L+     F  +  ++P DIY                   +    VG+  G +  L  
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY-------------------WCTADVGWVTGHSYLLYG 319
Query: 338 DLAVLKPTI-FPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM 396
            LA    T+ F  VP      +       +     +  +   A  + +  +  G      
Sbjct: 320 PLACGATTLMFEGVPN-----WPTPARMCQVVDKHQVNILYTAPTAIRALMAEG------ 368
Query: 397 WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTET 448
            D+ +    R  L    R +GS   P++P+  ++     G   C V++ +  TET
Sbjct: 369 -DKAIEGTDRSSL----RILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET 418

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K ++Y E+        + LL  G++KG  + +Y+   PE  +   AC+    +   ++  
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
             P+AV         + V+   E + A   IP   N   +  +  + SV  ++V+   G 
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
           D     +    G  L  +  L  +     QP      ED   I YTSG+TG PKG + T 
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
           G  L+     F  +  ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K ++Y E+        + LL  G++KG  + +Y+   PE  +   AC+    +   ++  
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
             P+AV         + V+   E + A   IP   N   +  +  + SV  ++V+   G 
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
           D     +    G  L  +  L  +     QP      ED   I YTSG+TG PKG + T 
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
           G  L+     F  +  ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K ++Y E+        + LL  G++KG  + +Y+   PE  +   AC+    +   ++  
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
             P+AV         + V+   E + A   IP   N   +  +  + SV  ++V+   G 
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
           D     +    G  L  +  L  +     QP      ED   I YTSG+TG PKG + T 
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
           G  L+     F  +  ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K ++Y E+        + LL  G++KG  + +Y+   PE  +   AC+    +   ++  
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
             P+AV         + V+   E + A   IP   N   +  +  + SV  ++V+   G 
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
           D     +    G  L  +  L  +     QP      ED   I YTSG+TG PKG + T 
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
           G  L+     F  +  ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
           K ++Y E+        + LL  G++KG  + +Y+   PE  +   AC+    +   ++  
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
             P+AV         + V+   E + A   IP   N   +  +  + SV  ++V+   G 
Sbjct: 166 FSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
           D     +    G  L  +  L  +     QP      ED   I YTSG+TG PKG + T 
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
           G  L+     F  +  ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301

>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 148/378 (39%), Gaps = 63/378 (16%)
Query: 245 SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS----NVAGFSLMVQFYPSDIY 300
           ++P P    K ++   I YTSG+TG PKG  +T+  L+S     V  F+L        ++
Sbjct: 133 NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQT----GQVF 188
Query: 301 MSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
           ++  P +                        +L +MD        I+PS+      +  G
Sbjct: 189 LNQAPFSF-----------------------DLSVMD--------IYPSL------VTGG 211
Query: 361 ITNAVKASGTLREK-LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR-FMGS 418
              A+      R K LF +   S  Q   S  TPS     L+     E +   ++ F+  
Sbjct: 212 TLWAIDKDMIARPKDLFASLEQSDIQVWTS--TPSFAEMCLMEASFSESMLPNMKTFLFC 269
Query: 419 GASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN-LSGHVGSPNPAC--EIK 475
           G    +      ++      +M  YG TE +  ++ I   +  L  +   P   C  + +
Sbjct: 270 GEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCR 329
Query: 476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTRE---VIDGDGWLHTGDIGLW 532
           L+ + E    + D    +GEI + GP V  GY  +   T +   +IDG+    TGD G +
Sbjct: 330 LLIMKEDGTIAPD--GEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAG-Y 386
Query: 533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY----GDSFNSCLVAI 588
           +  G L    R     KL  G  +  E+IE+    C +V    I     G+ ++  L  +
Sbjct: 387 VENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVV 445
Query: 589 VAVDPDVLKDWAASQGIK 606
           V  +    K++  +  IK
Sbjct: 446 VPGEHSFEKEFKLTSAIK 463

>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 148/378 (39%), Gaps = 63/378 (16%)
Query: 245 SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS----NVAGFSLMVQFYPSDIY 300
           ++P P    K ++   I YTSG+TG PKG  +T+  L+S     V  F+L        ++
Sbjct: 133 NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQT----GQVF 188
Query: 301 MSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
           ++  P +                        +L +MD        I+PS+      +  G
Sbjct: 189 LNQAPFSF-----------------------DLSVMD--------IYPSL------VTGG 211
Query: 361 ITNAVKASGTLREK-LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR-FMGS 418
              A+      R K LF +   S  Q   S  TPS     L+     E +   ++ F+  
Sbjct: 212 TLWAIDKDMIARPKDLFASLEQSDIQVWTS--TPSFAEMCLMEASFSESMLPNMKTFLFC 269
Query: 419 GASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN-LSGHVGSPNPAC--EIK 475
           G    +      ++      +M  YG TE +  ++ I   +  L  +   P   C  + +
Sbjct: 270 GEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCR 329
Query: 476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTRE---VIDGDGWLHTGDIGLW 532
           L+ + E    + D    +GEI + GP V  GY  +   T +   +IDG+    TGD G +
Sbjct: 330 LLIMKEDGTIAPD--GEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAG-Y 386
Query: 533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY----GDSFNSCLVAI 588
           +  G L    R     KL  G  +  E+IE+    C +V    I     G+ ++  L  +
Sbjct: 387 VENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVV 445
Query: 589 VAVDPDVLKDWAASQGIK 606
           V  +    K++  +  IK
Sbjct: 446 VPGEHSFEKEFKLTSAIK 463

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	666
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	6e-83
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	3e-82
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	6e-82
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	7e-82
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-81
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	3e-80
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	4e-77
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	5e-77
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	6e-76
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-75
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	9e-75
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	6e-72
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-71
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	4e-71
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	2e-70
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	4e-48
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-43
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	4e-37
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-22
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	6e-16
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	6e-21
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	7e-18
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	8e-21
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	9e-15
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	1e-14
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	3e-11
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	6e-09
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-08
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-08
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	5e-08
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-04
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	2e-04

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  271 bits (694), Expect = 6e-83
 Identities = 117/521 (22%), Positives = 207/521 (39%), Gaps = 83/521 (15%)

Query: 57  NVYRSARSPLTLVDRFPDHP-EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMT 115
           N+              P +P E G+        +E Y     LG     +   G     +
Sbjct: 9   NIVVG---------PKPFYPIEEGSAGTQLRKYMERYAK---LGAIAFTNAVTG--VDYS 54

Query: 116 YGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPD 175
           Y E       +G  L  +GL    RI L   N  E+ I   A         P  +     
Sbjct: 55  YAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLR 114

Query: 176 AVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235
            + + +  ++   +F   + L+ +++    + ++  IV++  K ++           L +
Sbjct: 115 ELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC------LDT 168

Query: 236 YLQLQSQGCSSPQPFCPPK---PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
           +++  +        F   +    E +A I  +SG+TG PKG  LTH N+++  +     +
Sbjct: 169 FIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI 228

Query: 293 ---QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPT 345
              Q  P    ++ +P  H +     +  +  G  V     F +   LK + D    K T
Sbjct: 229 YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQD---YKCT 285

Query: 346 IFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI 405
               VP L+  +                          K  ++         ++   + +
Sbjct: 286 SVILVPTLFAILN-------------------------KSELL---------NKYDLSNL 311

Query: 406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGH 464
                     + SG +PLS +V + +   F    V +GYG+TET+  I    +GD+  G 
Sbjct: 312 V--------EIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGA 363

Query: 465 VGSPNPACEIKLVDVPEMNYTSEDQP-HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGW 523
            G   P  + K++D  +   T +    + RGE+CV+GP++ +GY  N   T+E+ID +GW
Sbjct: 364 SGKVVPLFKAKVID-LD---TKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGW 419

Query: 524 LHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           LHTGDIG +       I+DR K++ K  +G  V P ++E+V
Sbjct: 420 LHTGDIGYYDEEKHFFIVDRLKSLIK-YKGYQVPPAELESV 459

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  267 bits (685), Expect = 3e-82
 Identities = 119/507 (23%), Positives = 198/507 (39%), Gaps = 87/507 (17%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           ++Y E+ A    + + L+  GLQ G R+        E L++  A      + +PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
              + Y +  AE + + C P   + + +  +++ +    +   G+               
Sbjct: 89  LHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGS------------- 135

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
              L   + G S          +D+A I YTSGTTG  KGA+L+H NL SN        +
Sbjct: 136 ---LTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWR 192

Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLM---DDLAVL----KPTI 346
           F P D+ +  LP+ H +      V       V  +   ++  +   D   +L    + T+
Sbjct: 193 FTPDDVLIHALPIYHTHG---LFV----ASNVTLFARGSMIFLPKFDPDKILDLMARATV 245

Query: 347 FPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIR 406
              VP  Y R+                                 Q+P          ++ 
Sbjct: 246 LMGVPTFYTRLL--------------------------------QSP----------RLT 263

Query: 407 ERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVG 466
           +   G +R   SG++PL  D         G  V+E YGMTET+   S    GD + G VG
Sbjct: 264 KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVG 323

Query: 467 SPNPACEIKLVDVPEMNYTSEDQPH-PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLH 525
              P    ++ D PE   T ++ P    G I V+GP VF+GY++   +T+     DG+  
Sbjct: 324 PALPGVSARVTD-PE---TGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFI 379

Query: 526 TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFN 582
           TGD+G     G + I+ R K++  +  G  V P++IE+       V++  + G     F 
Sbjct: 380 TGDLGKIDERGYVHILGRGKDLV-ITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFG 438

Query: 583 SCLVAIV------AVDPDVLKDWAASQ 603
             + A+V       +D   +      Q
Sbjct: 439 EGVTAVVVRDKGATIDEAQVLHGLDGQ 465

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  267 bits (685), Expect = 6e-82
 Identities = 96/501 (19%), Positives = 176/501 (35%), Gaps = 82/501 (16%)

Query: 70  DRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSG 129
               D  ++  +           P                  +  TY +++A        
Sbjct: 7   HHVDDDDKMKNIGWMLRQRATVSPR------LQAYVEPSTDVRM-TYAQMNALANRCADV 59

Query: 130 LLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAI 189
           L   G+ KG R+ L + N  E+  + +  +    ++VP+   L    V ++++ +  + +
Sbjct: 60  LTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVV 119

Query: 190 FCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQP 249
                +   + +  ++      +    G D     L S +                  +P
Sbjct: 120 IYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAA----------------DEP 163

Query: 250 FCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI 309
                 +D   I YTSGTTG PKG V TH ++ S  + ++  +     D  +  LP+ H+
Sbjct: 164 AVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHV 223

Query: 310 YERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
                 I S   GV +     F   D  K+   +   +  I  +VP + N +        
Sbjct: 224 AALTTVIFSAMRGVTLISMPQF---DATKVWSLIVEERVCIGGAVPAILNFMR------- 273

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
                                    Q P          +  E      R+  +G +P+  
Sbjct: 274 -------------------------QVP----------EFAELDAPDFRYFITGGAPMPE 298

Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLS--GHVGSPNPACEIKLVDVPEMN 483
            ++         +V++GY +TE+    + +   D L   G  G      ++ +    +  
Sbjct: 299 ALIKIYAA-KNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGV 356

Query: 484 YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR 543
                + H  GE+ ++  I+ + Y+     TR+  D +GW  TGDIG     G L I DR
Sbjct: 357 ----IREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDR 411

Query: 544 KKNIFKLAQGEYVAPEKIENV 564
            K++     GE V P +IE+V
Sbjct: 412 LKDMIISG-GENVYPAEIESV 431

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  268 bits (687), Expect = 7e-82
 Identities = 116/518 (22%), Positives = 197/518 (38%), Gaps = 76/518 (14%)

Query: 57  NVYRSARSPLTLVDRFPDHP-EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMT 115
           N+ +            P +P E GT  +    A++ Y      GT    D  +     +T
Sbjct: 6   NIKKG---------PAPFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIE--VNIT 52

Query: 116 YGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPD 175
           Y E       +   +  +GL    RI +   N  ++ +             P  D     
Sbjct: 53  YAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNER 112

Query: 176 AVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235
            +   +N ++   +F   + L  +L+   ++P +  I+++  K ++       S    ++
Sbjct: 113 ELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGF---QSMYTFVT 169

Query: 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA---GFSLMV 292
                        P    + + IA I  +SG+TG PKG  L H       +         
Sbjct: 170 SHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN 229

Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFP 348
           Q  P    +S +P  H +     +  +  G  V     F +   L+ + D    K     
Sbjct: 230 QIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQD---YKIQSAL 286

Query: 349 SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER 408
            VP L++                            K  ++         D+   + +   
Sbjct: 287 LVPTLFSFFA-------------------------KSTLI---------DKYDLSNLH-- 310

Query: 409 LGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLSGHVGS 467
                  + SG +PLS +V + +   F    + +GYG+TET+  I    +GD+  G VG 
Sbjct: 311 ------EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGK 364

Query: 468 PNPACEIKLVDVPEMNYTSEDQP-HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHT 526
             P  E K+VD  +   T +    + RGE+CVRGP++  GY  N   T  +ID DGWLH+
Sbjct: 365 VVPFFEAKVVD-LD---TGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS 420

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           GDI  W       I+DR K++ K  +G  VAP ++E++
Sbjct: 421 GDIAYWDEDEHFFIVDRLKSLIK-YKGYQVAPAELESI 457

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  267 bits (685), Expect = 1e-81
 Identities = 104/524 (19%), Positives = 192/524 (36%), Gaps = 89/524 (16%)

Query: 58  VYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYG 117
            Y+     L     +P       L D    A E + +   + +      +    + M + 
Sbjct: 6   KYKIGFPSLY----YPKIS----LADRIDAAAEKFGEKTAIISAEPKFPSEFP-ESMNFL 56

Query: 118 EVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAV 177
           E+    K++ SG+   G++KG  +G+ + N  ++++  +A    +   VP+        +
Sbjct: 57  EICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFEL 116

Query: 178 KYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL 237
           ++++N +E   +             + +      + VVGG+   L  +            
Sbjct: 117 EHILNDSEATTLVVHSMLYENFKPVLEKTGVER-VFVVGGEVNSLSEV------------ 163

Query: 238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPS 297
            + S           P  ED+A I YT GTTG PKG +LTH NL +N    ++       
Sbjct: 164 -MDSGSEDFENVKVNP-EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHM 221

Query: 298 DIYMSYLPLAHIYERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRL 353
           D  +  +P+ H  E     + V  G        F Q    + ++     K T   +VP  
Sbjct: 222 DTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEK---YKGTFSWAVPPA 278

Query: 354 YNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRV 413
            N                               +V+            ++ +        
Sbjct: 279 LN------------------------------VLVNTLES--SNKTYDWSYL-------- 298

Query: 414 RFMGSGASPLSPDVMDFLKVCFG-------CQVMEGYGMTETSCIISAIDK-GDNLSGHV 465
           +   +GA P++P +++ L             +  + +GMTE   +++       + S   
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQ 358

Query: 466 GSPNPACEIKLVDVPEMNYTSEDQPH-PRGEICVRGPIVFQGYYKNEVQTREVI----DG 520
           G P    E+K++   E      +      GEI +RGP +F+GY+K E + +E       G
Sbjct: 359 GVPMSDIELKVIS-LE---DGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKG 414

Query: 521 DGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
             +  TGD+G     G L   DR K + K  +G  +AP ++E +
Sbjct: 415 RKFFRTGDVGFIDEEGFLHFQDRVKEVIK-YKGYTIAPFELEAL 457

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  263 bits (675), Expect = 3e-80
 Identities = 126/528 (23%), Positives = 210/528 (39%), Gaps = 102/528 (19%)

Query: 57  NVYRSARSPLTLVDRFPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTY 116
            ++RS    + +       P+   LH   +  + N+     L     ++G  G     TY
Sbjct: 7   FIFRSKLPDIYI-------PKNLPLHSYVLENLSNHSSKPCL-----INGANG--DVYTY 52

Query: 117 GEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDA 176
            +V    + + SGL   G+Q+G  I L+L + PE+++     S    I         P  
Sbjct: 53  ADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAE 112

Query: 177 VKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY 236
           +      +  + +         +  F  E   V ++ V    D              + +
Sbjct: 113 LAKHAKASRAKLLITQACYYEKVKDFARESD-VKVMCVDSAPDGC------------LHF 159

Query: 237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA----GFSLMV 292
            +L      +  P     P+D+  + Y+SGTTG PKG +LTH  LI++VA    G +  +
Sbjct: 160 SELTQAD-ENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL 218

Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLM---DDLAVL------K 343
            F+  D+ +  LP+ HIY       ++   +  G   G  + +M   +  ++L      K
Sbjct: 219 YFHSEDVILCVLPMFHIY-------ALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYK 271

Query: 344 PTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFN 403
            +I P VP +   I                          K   +         D+   +
Sbjct: 272 VSIAPVVPPVMMSIA-------------------------KSPDL---------DKHDLS 297

Query: 404 KIRERLGGRVRFMGSGASPLSPDVMD-FLKVCFGCQVMEGYGMTETSCIIS-----AIDK 457
            +R         + SG +PL  ++ D         ++ +GYGMTE   +++     A + 
Sbjct: 298 SLR--------MIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEP 349

Query: 458 GDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQP-HPRGEICVRGPIVFQGYYKNEVQTRE 516
            D   G  G+     E+K+VD PE   T    P +  GEIC+RG  + +GY  +   T  
Sbjct: 350 FDIKPGACGTVVRNAEMKIVD-PE---TGASLPRNQPGEICIRGDQIMKGYLNDPEATSR 405

Query: 517 VIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
            ID +GWLHTGDIG       L I+DR K + K  +G  VAP ++E +
Sbjct: 406 TIDKEGWLHTGDIGYIDDDDELFIVDRLKELIK-YKGFQVAPAELEAL 452

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  254 bits (650), Expect = 4e-77
 Identities = 85/494 (17%), Positives = 167/494 (33%), Gaps = 88/494 (17%)

Query: 80  TLHDNFIYAVENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQ 136
           +L        +                           TY  +      +   L      
Sbjct: 2   SLDFWLYKQAQQNGHHIAITDGQES------------YTYQNLYCEASLLAKRL---KAY 46

Query: 137 KGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL 196
           +  R+GLY+ N  + +I+ HAC   +     +   L P+ +   +   +++ IFC     
Sbjct: 47  QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLE 106

Query: 197 NTL--LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPK 254
                +  + +I      +   G  ++   +   +     S   +  +   S        
Sbjct: 107 LRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDT-----SNETVVPKESPSNILNTSFN 161

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
            +DIA+I +TSGTTG  K    T  N  ++  G    + F     ++S LP+ HI   + 
Sbjct: 162 LDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSV 221

Query: 315 QIVSVYYGVAVGFYQG-DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
            + +V  G  V      +  +++  +   + T    VP+  N +             +++
Sbjct: 222 LLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL-------------MQQ 268

Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD-FLK 432
            L                                     ++ +  G + LS  +++  L+
Sbjct: 269 GLHEPY--------------------------------NLQKILLGGAKLSATMIETALQ 296

Query: 433 VCFGCQVMEGYGMTETSCIISAIDKGDNLS--GHVGSPNPACEIKLVDVPEMNYTSEDQP 490
             +   +   +GMTET             +    VG P+   ++K+ +            
Sbjct: 297 --YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKN---------PNK 345

Query: 491 HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 550
              GE+ ++G  V  GY           + +G+ +TGDI      G + I DR+K++   
Sbjct: 346 EGHGELMIKGANVMNGYLYPT-DLTGTFE-NGYFNTGDIAEIDHEGYVMIYDRRKDLII- 402

Query: 551 AQGEYVAPEKIENV 564
           + GE + P +IE V
Sbjct: 403 SGGENIYPYQIETV 416

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  254 bits (650), Expect = 5e-77
 Identities = 107/509 (21%), Positives = 181/509 (35%), Gaps = 103/509 (20%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           +TY E++AA     +G     +    R+ ++     E  +   A       +VPL    G
Sbjct: 49  LTYAELAAA-----AGATAGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSG 103

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
              + ++++ +    +   P                          E  P+L +   V +
Sbjct: 104 DKELAHILSDSAPSLVLAPPDA------------------------ELPPALGALERVDV 139

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
                          P       D A + YTSGTTG PKGAV+    L + +   +   Q
Sbjct: 140 DV-------RARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192

Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVAVG--------FYQGDNLKLMDDLAVLKPT 345
           +   D+ +  LPL H++     ++ +   +  G        F      + ++D      T
Sbjct: 193 WTGEDVLVQGLPLFHVH---GLVLGILGPLRRGGSVRHLGRFSTEGAARELND----GAT 245

Query: 346 IFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI 405
           +   VP +Y+RI       + A   L + L                              
Sbjct: 246 MLFGVPTMYHRI----AETLPADPELAKAL------------------------------ 271

Query: 406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV 465
                   R + SG++ L     + +    G +V+E YGMTET    S    G+  +G V
Sbjct: 272 -----AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTV 326

Query: 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLH 525
           G P P  E++LV+  +    +       GEI VRGP +F  Y      T      DG+  
Sbjct: 327 GVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFR 385

Query: 526 TGDIGLWLPGGRLKIIDRK-KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSF 581
           TGD+ +  P G ++I+ RK  ++ K   G  +   +IEN   +   V +  + G      
Sbjct: 386 TGDMAVRDPDGYVRIVGRKATDLIKSG-GYKIGAGEIENALLEHPEVREAAVTGEPDPDL 444

Query: 582 NSCLVAIV-------AVDPDVLKDWAASQ 603
              +VA +             L D  A++
Sbjct: 445 GERIVAWIVPADPAAPPALGTLADHVAAR 473

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  251 bits (644), Expect = 6e-76
 Identities = 94/458 (20%), Positives = 155/458 (33%), Gaps = 66/458 (14%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
            TYGE+    +   S L   G+    RI L +++     +          + V     L 
Sbjct: 49  TTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLT 108

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
           P    Y++ H+   A+      +  +   +         ++V    E  P L        
Sbjct: 109 PADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPL----- 163

Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV- 292
               +      +          +DIA   Y+SG+TG PKG V TH NL      ++  + 
Sbjct: 164 ---FEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL 220

Query: 293 QFYPSDIYMSYLPLAHIYERANQIV-SVYYGVAVGFYQG--DNLKLMDDLAVLKPTIFPS 349
               +D+  S   L   Y   N +   +  G              +   L   +PT+F  
Sbjct: 221 GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYG 280

Query: 350 VPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERL 409
           VP LY  +                                          LV   +  R 
Sbjct: 281 VPTLYANM------------------------------------------LVSPNLPARA 298

Query: 410 GGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPN 469
              +R   S    L  ++ +     FGC++++G G TE   I  +   G    G  G P 
Sbjct: 299 DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPV 358

Query: 470 PACEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHT 526
           P  EI+L D             P    G++ ++GP     Y+ N  ++R       W+ +
Sbjct: 359 PGYEIELRD-------EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRS 410

Query: 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           GD    LP G      R  ++ K++ G+YV+P ++E V
Sbjct: 411 GDKYCRLPNGCYVYAGRSDDMLKVS-GQYVSPVEVEMV 447

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  250 bits (642), Expect = 1e-75
 Identities = 97/497 (19%), Positives = 170/497 (34%), Gaps = 97/497 (19%)

Query: 80  TLHDNFIYAVENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQ 136
           TL D +      +PD   +   G R            +T+ +  A  + + SGLL  G+ 
Sbjct: 7   TLADVYRRNAALFPDRTAFMVDGVR------------LTHRDYLARAERLASGLLRDGVH 54

Query: 137 KGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL 196
            G R+ +   N  E + +  A +    I +P+   L  D + +V+       +       
Sbjct: 55  TGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR 114

Query: 197 NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPE 256
           + +   +  +  V     +G                   +  L S    +P         
Sbjct: 115 DIVAGVLPSLGGVKKAYAIGDGSGPFAP-----------FKDLAS---DTPFSAPEFGAA 160

Query: 257 DIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI 316
           D   I +T+   G P+GA+++ GNL+   +      +   +D+ +  LPL H+      +
Sbjct: 161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220

Query: 317 VSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLR 372
                G A      F   D  +   D+   K T+                          
Sbjct: 221 TLQQAGGASVIAAKF---DPAQAARDIEAHKVTVMAEFA----------P---------- 257

Query: 373 EKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK 432
                                  M   ++ ++        +R +    +P + +  +   
Sbjct: 258 -----------------------MLGNIL-DQAAPAQLASLRAVTGLDTPETIERFE--A 291

Query: 433 VCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP 492
            C        +G +ETS + +     D      G P     + +VD       +ED+P P
Sbjct: 292 TCPNATFWATFGQSETSGLSTFAPYRDRP-KSAGRPLFWRTVAVVD-------AEDRPLP 343

Query: 493 R---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR--KKNI 547
               GEI +RGP VF+GY+ N   T+     +GW HTGD+G +   G L    R  +K +
Sbjct: 344 PGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKEL 402

Query: 548 FKLAQGEYVAPEKIENV 564
            K   GE V P ++E  
Sbjct: 403 IK-TGGENVYPAEVEGA 418

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  258 bits (660), Expect = 9e-75
 Identities = 130/573 (22%), Positives = 220/573 (38%), Gaps = 97/573 (16%)

Query: 12  AVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDR 71
           +   H  S+                   SQ    +           ++RS    + +   
Sbjct: 4   SHHHHHHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDV---IFRSKLPDIYI--- 57

Query: 72  FPDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL 131
               P   +LHD     +  +     L     ++G  G     TY +V    ++I +   
Sbjct: 58  ----PNHLSLHDYIFQNISEFATKPCL-----INGPTG--HVYTYSDVHVISRQIAANFH 106

Query: 132 FHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC 191
             G+ +   + L L N PE+++   A S     +        P  +      +  + I  
Sbjct: 107 KLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIIT 166

Query: 192 IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFC 251
             + ++ +    ++   V  IV +   +    S+P   G    + L   +   S      
Sbjct: 167 EARYVDKIKPLQNDDGVV--IVCIDDNE----SVPIPEGCLRFTELTQSTTEASEVIDSV 220

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA----GFSLMVQFYPSDIYMSYLPLA 307
              P+D+  + Y+SGTTG PKG +LTH  L+++VA    G +  + F+  D+ +  LP+ 
Sbjct: 221 EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMF 280

Query: 308 HIYERANQIVSVYYGVAVGFYQGDNLKLM---DDLAVL------KPTIFPSVPRLYNRIY 358
           HIY       ++   +  G   G  + +M   +   +L      K T+ P VP +   I 
Sbjct: 281 HIY-------ALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIA 333

Query: 359 AGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGS 418
                                    K +           ++   + IR         + S
Sbjct: 334 -------------------------KSSET---------EKYDLSSIR--------VVKS 351

Query: 419 GASPLSPDVMD-FLKVCFGCQVMEGYGMTETSCIIS-----AIDKGDNLSGHVGSPNPAC 472
           GA+PL  ++ D         ++ +GYGMTE   +++     A +     SG  G+     
Sbjct: 352 GAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNA 411

Query: 473 EIKLVDVPEMNYTSEDQ-PHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGL 531
           E+K+VD P+   T +    +  GEIC+RG  + +GY  N   T E ID DGWLHTGDIGL
Sbjct: 412 EMKIVD-PD---TGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGL 467

Query: 532 WLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
                 L I+DR K + K  +G  VAP ++E +
Sbjct: 468 IDDDDELFIVDRLKELIK-YKGFQVAPAELEAL 499

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  241 bits (618), Expect = 6e-72
 Identities = 82/504 (16%), Positives = 160/504 (31%), Gaps = 96/504 (19%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
            L       V+++P    +         + G + ++Y E+      + + L   GL KG 
Sbjct: 31  PLTRILTVGVQSHPHSLAI---------ICGERQLSYIELDRLSTNLATRLAEKGLGKGD 81

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNT- 198
              + L N  E+ IV  A      + +    +     +   +   + + +    Q     
Sbjct: 82  TALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFS 141

Query: 199 ----LLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPK 254
               + S      S  +I+++  +                  L        +   F    
Sbjct: 142 NNQFIDSLHDVNLSPEIILMLNHQATDF------------GLLDWIETPAETFVDFSSTP 189

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
            +++A    + G+TGTPK    TH +   +V   + +     +   +  LP  H +    
Sbjct: 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNF---- 245

Query: 315 QIVSVYYGVAVGFYQGDNLKLMDD---LAVL------KPTIFPSVPRLYNRIYAGITNAV 365
             +    G     + G  + +  +   L         +  +   VP              
Sbjct: 246 --MLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVI----MWLEKA 299

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
                                    Q  S                  ++ +  G +    
Sbjct: 300 AQYKD--------------------QIQS------------------LKLLQVGGASFPE 321

Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH-VGSP-NPACEIKLVDVPEMN 483
            +   +     C++ + +GM E     + +D  D       G P +   EIK+VD     
Sbjct: 322 SLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD----- 376

Query: 484 YTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
              + +  P    G +  RGP  F GYY++     +V D D + ++GD+    P G L++
Sbjct: 377 --EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV 434

Query: 541 IDRKKNIFKLAQGEYVAPEKIENV 564
           + R K+      GE +A E+IE +
Sbjct: 435 VGRIKDQI-NRGGEKIASEEIEKL 457

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  240 bits (614), Expect = 2e-71
 Identities = 101/504 (20%), Positives = 162/504 (32%), Gaps = 100/504 (19%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T  D        Y D   +           G    +Y E+      + +G    G+Q+  
Sbjct: 26  TFGDLLRDRAAKYGDRIAI---------TCGNTHWSYRELDTRADRLAAGFQKLGIQQKD 76

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNT- 198
           R+ + L N  E+  V  A      + V    +     + Y    AE  A           
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136

Query: 199 ----LLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPK 254
                    S++P++  I+V G  +E LP                     + P      K
Sbjct: 137 YRSLARQVQSKLPTLKNIIVAGEAEEFLP----------------LEDLHTEPVKLPEVK 180

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
             D+A +  + G+TG  K    TH + I ++     +     S +Y++ LP+AH Y    
Sbjct: 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNY---- 236

Query: 315 QIVSVYYGVAVGFYQGDNLKLMDD---LAVL------KPTIFPSVPRLYNRIYAGITNAV 365
                  GV    Y G  + L                K TI   VP L         +A 
Sbjct: 237 --PLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAM----VWMDAA 290

Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
            +                          S                  ++ +  G +  S 
Sbjct: 291 SSRRD--------------------DLSS------------------LQVLQVGGAKFSA 312

Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH-VGSP-NPACEIKLVDVPEMN 483
           +    +K  FGC + + +GM E     + +D  + +  +  G P +P  E ++ D     
Sbjct: 313 EAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWD----- 367

Query: 484 YTSEDQPHPR---GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
               D+       G +  RGP   +GYYK E         DG+  TGDI      G + +
Sbjct: 368 --DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425

Query: 541 IDRKKNIFKLAQGEYVAPEKIENV 564
             R K+      GE VA E++EN 
Sbjct: 426 EGRAKDQI-NRGGEKVAAEEVENH 448

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  238 bits (609), Expect = 4e-71
 Identities = 85/496 (17%), Positives = 158/496 (31%), Gaps = 89/496 (17%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T+++    A    PD+  L          G    +T+ E+ A  + + + L   GL+   
Sbjct: 3   TVNEMLRRAATRAPDHCAL-----AVPARG--LRLTHAELRARVEAVAARLHADGLRPQQ 55

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
           R+ +   N  + +I   A      +   L   L    +  ++   E+ A          +
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ--V 113

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
              I +  S   I+ +G  D      P + G                P      +P   A
Sbjct: 114 ADAIFQSGSGARIIFLG--DLVRDGEPYSYG---------------PPIEDPQREPAQPA 156

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNV--AGFSLMVQFYPSDIYMSYLPLAHIYERANQIV 317
            I YTSGTTG PK A++      S V      + ++    ++ +  +PL H+        
Sbjct: 157 FIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG---FFA 213

Query: 318 SVYYGVAVG--------FYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASG 369
            +   +A+         F     +  +  +   + T   + P   +              
Sbjct: 214 VLVAALALDGTYVVVEEF---RPVDALQLVQQEQVTSLFATPTHLDA------------- 257

Query: 370 TLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMD 429
                                     +           +L   +R +    + +   V++
Sbjct: 258 --------------------------LAAAAAHAGSSLKLD-SLRHVTFAGATMPDAVLE 290

Query: 430 FLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQ 489
            +      + +  YG TE    +          G   +P    E+++V            
Sbjct: 291 TVHQHLPGEKVNIYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVR-IGGGVDEIVA 346

Query: 490 PHPRGEICVRGP-IVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIF 548
               GE+ V      F GY      T E +  DGW  T D+ +W P G ++I+ R  ++ 
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI 405

Query: 549 KLAQGEYVAPEKIENV 564
             + GE + P +IE V
Sbjct: 406 I-SGGENIHPSEIERV 420

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  239 bits (613), Expect = 2e-70
 Identities = 91/470 (19%), Positives = 160/470 (34%), Gaps = 87/470 (18%)

Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
           ++Y E++ A   +   L   G++ G    + L N  E  I   A        V    +  
Sbjct: 51  LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNT-----LLSFISEIPSVHLIVVVGGKDEHLPSLPST 228
              +    +  E   +    Q         L +F++E  S+ ++ ++    EH       
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEH------- 163

Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
                 +     +   +      P   +++A    + GTTGTPK    TH +   +V   
Sbjct: 164 ------NLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRS 216

Query: 289 SLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDD---LAVL--- 342
             + QF     Y+  +P AH Y           G    F  G  + L  D          
Sbjct: 217 VEICQFTQQTRYLCAIPAAHNY------AMSSPGSLGVFLAGGTVVLAADPSATLCFPLI 270

Query: 343 ---KPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR 399
              +  +   VP   +        A+    +                             
Sbjct: 271 EKHQVNVTALVPPAVSLW----LQALIEGES----------------------------- 297

Query: 400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAI-DKG 458
                 R +L   ++ +  G + LS  +   +    GCQ+ + +GM E     + + D  
Sbjct: 298 ------RAQLA-SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSA 350

Query: 459 DNLSGHVGSP-NPACEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNEVQT 514
           + +    G P  P  E+ + D        E  P P+   G +  RGP  F+GYYK+    
Sbjct: 351 EKIIHTQGYPMCPDDEVWVADA-------EGNPLPQGEVGRLMTRGPYTFRGYYKSPQHN 403

Query: 515 REVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
               D +G+  +GD+    P G + +  R+K+      GE +A E+IEN+
Sbjct: 404 ASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRG-GEKIAAEEIENL 452

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  176 bits (449), Expect = 4e-48
 Identities = 106/496 (21%), Positives = 171/496 (34%), Gaps = 115/496 (23%)

Query: 87  YAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLI 146
            A   +         V      G     TY EV    + +  GL   G+  G R+     
Sbjct: 26  RAAALFGR-----KEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGF 80

Query: 147 NRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEI 206
           N    L    A      +       L P  + Y++NHAE + +   P  L  + +   E+
Sbjct: 81  NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL 140

Query: 207 PSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPE-DIATICYTS 265
            +V   VV+  K               ++Y +   +  + P       PE     + YT+
Sbjct: 141 KTVQHFVVMDEKAP----------EGYLAYEEALGEE-ADPVRV----PERAACGMAYTT 185

Query: 266 GTTGTPKGAVLTH--------GNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIV 317
           GTTG PKG V +H           + +    S        D+ +  +P+ H     N   
Sbjct: 186 GTTGLPKGVVYSHRALVLHSLAASLVDGTALS------EKDVVLPVVPMFH----VNAWC 235

Query: 318 SVYYGVAVG--------FYQGDNL-KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKAS 368
             Y    VG             +L +L D       T    VP     ++  + + ++++
Sbjct: 236 LPYAATLVGAKQVLPGPRLDPASLVELFDGE---GVTFTAGVPT----VWLALADYLEST 288

Query: 369 GTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVM 428
           G                                      RL    R +  G S     ++
Sbjct: 289 G-------------------------------------HRLKTLRRLV-VGGSAAPRSLI 310

Query: 429 D-FLKVCFGCQVMEGYGMTETSCIISA---IDKGDNLSGH--------VGSPNPACEIKL 476
             F +   G +V +GYG+TETS ++         ++LS           G P P   +++
Sbjct: 311 ARFER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRV 368

Query: 477 VDVPEMNYTSEDQPH---PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWL 533
            D  E        P      GE+ ++GP +  GYY NE  TR  +  DG+  TGDI +W 
Sbjct: 369 AD-EEGR----PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWD 423

Query: 534 PGGRLKIIDRKKNIFK 549
             G ++I DR K++ K
Sbjct: 424 EEGYVEIKDRLKDLIK 439

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  163 bits (416), Expect = 2e-43
 Identities = 82/462 (17%), Positives = 161/462 (34%), Gaps = 72/462 (15%)

Query: 114 MTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTL 172
             + E+S   ++  + L    GLQ+G R+ + L   PEW +V   C     I +P    +
Sbjct: 74  WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133

Query: 173 GPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232
               + Y +  ++ +AI    + +  + +  SE PS+ + ++V  K              
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCD----------G 183

Query: 233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
            +++ +L     S+         ++ + I +TSGT+G PK A  ++ +L       +   
Sbjct: 184 WLNFKKLL-NEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWT 242

Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSV-YYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVP 351
               SDI  +      I      ++     G     +                       
Sbjct: 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPK---------------FDPL 287

Query: 352 RLYNRI--YAGITNAVKASGTLREKLFTA--AYNSKKQAIVSGQTPSKMWDRLVFNKIRE 407
            +   +  Y  I +           +  A   Y              +M   L+   +  
Sbjct: 288 VILKTLSSY-PIKS-----------MMGAPIVY--------------RM---LLQQDLSS 318

Query: 408 RLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGS 467
                ++   +    L P+ ++  +   G  + E YG TET              G++G+
Sbjct: 319 YKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGT 378

Query: 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG-----PIVFQGYYKNEVQTREVIDGDG 522
                +++++D  + N      P   G+I +R        +F GY  N  +T   I G  
Sbjct: 379 AASCYDVQIID-DKGN---VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRG-D 433

Query: 523 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 564
           +   GD G+    G  + + R  +I   + G  + P ++EN 
Sbjct: 434 FWLLGDRGIKDEDGYFQFMGRADDIINSS-GYRIGPSEVENA 474

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  145 bits (368), Expect = 4e-37
 Identities = 104/535 (19%), Positives = 173/535 (32%), Gaps = 129/535 (24%)

Query: 73  PDHPEIGTLHDNFIYAVENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSG 129
            ++ +  +L D       + P+     +L   +           MTY ++    K I + 
Sbjct: 5   KEYLQCQSLVDVVRLRALHSPNKKSCTFLNKELEET--------MTYEQLDQHAKAIAAT 56

Query: 130 LLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDA---VKYVVNHAEI 186
           L   G + G R+ L        +     C     I+VP+Y           + +V +++ 
Sbjct: 57  LQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKP 116

Query: 187 EAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSS 246
             +  I   +                       + L + P    +  I+   ++    SS
Sbjct: 117 VIVLMIADHIKKF------------------TADELNTNPKFLKIPAIALESIELNRSSS 158

Query: 247 PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPL 306
            QP    K  DIA + YTSG+T  PKG +++H NL+ N+             I  S+LP 
Sbjct: 159 WQP-TSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPP 217

Query: 307 AHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
            H          +   +    Y G    +M       P  F   P  +      + +  K
Sbjct: 218 HHDM-------GLIGCILTPIYGGIQAIMMS------PFSFLQNPLSW------LKHITK 258

Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKM--WD----RLVFNKIRERLGGRVRFMGSGA 420
              T      + + N      V      K    D       FN               GA
Sbjct: 259 YKAT-----ISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFN---------------GA 298

Query: 421 SPLSPDVMD-FLKVC----FGCQVME-GYGMTETSCIISAIDKG----------DNLSGH 464
            P+  + M+ F +      F  +     YG+ E + +++    G          +    H
Sbjct: 299 EPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDH 358

Query: 465 ---------------VGSPNPACEIKLVDVPEMNYTSEDQPHPR-GEICVRGPIVFQGYY 508
                          V S NP  E+K++D P+   T       + GEI V+   V +GY+
Sbjct: 359 RVHFADDNSPGSYKLVSSGNPIQEVKIID-PD---TLIPCDFDQVGEIWVQSNSVAKGYW 414

Query: 509 KNEVQTREVI--------DGDGWLHTGDIGLWLPG-----GRLK--IIDRKKNIF 548
               +TR               +L TGD+G          GR+K  II   KN +
Sbjct: 415 NQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRIKDLIIIYGKNHY 469

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  100 bits (252), Expect = 2e-22
 Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 8/188 (4%)

Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
           T+ ++     +  +  + HG+ KG  + L L +R ++            I+VP    L  
Sbjct: 88  TFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147

Query: 175 DAVKYVVNHAEIEAIFCIP--QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232
             + Y +  A ++ I CI        +    +E   + L     G D     +       
Sbjct: 148 RDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWID------ 201

Query: 233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV 292
               L+  S     P      K EDI  + ++SGT G PK     +   + ++       
Sbjct: 202 FRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ 261

Query: 293 QFYPSDIY 300
                 ++
Sbjct: 262 NVEDDGLH 269

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 80.3 bits (199), Expect = 6e-16
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 22/128 (17%)

Query: 414 RFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSG---HVGS--- 467
           ++      PL+P+V +      G ++MEG+G TET   I+               GS   
Sbjct: 344 KYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIA------TFPWMEPKPGSIGK 397

Query: 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG----PI-VFQGYYKNEVQTREVIDGDG 522
           P P  +I+L+D  +       +    GEI +      P+ +F  Y K+  +T E     G
Sbjct: 398 PTPGYKIELMD-RDGR---LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHD-G 452

Query: 523 WLHTGDIG 530
           + HTGD+ 
Sbjct: 453 YYHTGDMA 460

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 95.1 bits (237), Expect = 8e-21
 Identities = 40/249 (16%), Positives = 80/249 (32%), Gaps = 36/249 (14%)

Query: 73  PDHPEIGTLHDNFIYAVENYPD---YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSG 129
             H  + +L           P    + ++      DG       +T+ ++      +   
Sbjct: 18  GSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVA---ITLTWSQLYRRTLNVAQE 74

Query: 130 LLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP---DAVKYVVNHAEI 186
           L   G   G R+ +      E+++          I+VPL    G    +    V++ +  
Sbjct: 75  LSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSP 133

Query: 187 EAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSS 246
            AI      ++ ++  ++  P      ++      +  L   +                +
Sbjct: 134 VAILTTSSAVDDVVQHVARRPGESPPSII-----EVDLLDLDAP---------------N 173

Query: 247 PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA------GFSLMVQFYPSDIY 300
              F   +    A + YTSG+T TP G V++H N+  N                 P+   
Sbjct: 174 GYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSAL 233

Query: 301 MSYLPLAHI 309
           +S+LP  H 
Sbjct: 234 VSWLPFYHD 242

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 76.3 bits (188), Expect = 9e-15
 Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 49/176 (27%)

Query: 411 GRVRFMGSGASPLSPDVMD-FLKVCFGCQ-----VMEGYGMTETSCIISAIDKG------ 458
           G +  + SG+  +    +  F             +   Y + E +  ++    G      
Sbjct: 311 GNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETV 370

Query: 459 ----DNLSGH---------------VGSPNPACEIKLVDVPEMNYTSEDQPHPR-GEICV 498
               ++LS                    P     +++VD  +   T  + P    GEI V
Sbjct: 371 DFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SD---TCIECPDGTVGEIWV 425

Query: 499 RGPIVFQGYYKNEVQTREVI-----------DGDGWLHTGDIGLWLPGGRLKIIDR 543
            G  V  GY++   ++                   WL TGD G     G++ II R
Sbjct: 426 HGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 75.1 bits (184), Expect = 1e-14
 Identities = 40/295 (13%), Positives = 89/295 (30%), Gaps = 39/295 (13%)

Query: 247 PQPFCPP--KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ---FYPSDIYM 301
                P     +    +  + GTTG PK  V     + + ++      Q     PS   +
Sbjct: 80  VANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTL 139

Query: 302 SYLPL-AHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
           + +P   HI    N+  ++  G             +D   V +         +    +  
Sbjct: 140 AAIPTGPHIVGAINKERALRLGGMFFSID------IDPRWVKRSLSEGDTATVRKYTHHL 193

Query: 361 ITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLV-FNKIRERLGGRVRFMGSG 419
           +            +                 TP  +   L+   ++  ++   +  +  G
Sbjct: 194 VDQVQNTLMNQDIRFLVT-------------TPP-VLRELLKRPEVVLQMKQSLAQITLG 239

Query: 420 ASPLSPDVMDFL--KVCFGCQVMEGYGMTETSCI-ISAIDKGDNLSGHVGSPNPACEIKL 476
            + L+ D + F+  ++   C+    YG T    +  S +   ++      S +P     +
Sbjct: 240 GTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDV 299

Query: 477 VDVPEMNYTSEDQPH-PRGEICV---RGPIVFQGYYKNEVQTREVIDGDGWLHTG 527
           VD      T++   +  RG + V        +    + +   R +    G+    
Sbjct: 300 VD-SI---TAQTVEYGERGNVIVTHLSPWAFYPRVAERDTAIR-LPGVSGFAGDR 349

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 65.3 bits (160), Expect = 3e-11
 Identities = 51/329 (15%), Positives = 98/329 (29%), Gaps = 53/329 (16%)

Query: 220 EHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPK----PEDIATICYTSGTTGTPKGAV 275
            +   +      K++           S Q              A + YTSG+TGTPKG  
Sbjct: 135 NNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVR 194

Query: 276 LTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKL 335
           ++  NL S    +         ++    L L     +   + S        F        
Sbjct: 195 VSRHNLSSFSDAW----GKLIGNVAPKSLELGG-VGKFLCLAS------RAF-------- 235

Query: 336 MDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK 395
             D+ + +  +F +          G+        ++ + L       +     +G  PS 
Sbjct: 236 --DVHIGE--MFLA-------WRFGLCAVTGERLSMLDDL--PRTFRELGVTHAGIVPS- 281

Query: 396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETS--CIIS 453
           + D+       E     + ++G G   ++P             ++  YG TE +  C   
Sbjct: 282 LLDQTGLVP--EDAPH-LVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAG 338

Query: 454 AIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKN 510
            I    +    +G P       ++          ++   +   GE+ + G +V  GY   
Sbjct: 339 RILPDSDTR-CIGHPLGDSVAHVLA------PGSNEHVKKGMAGELVIEGSLVANGYLNR 391

Query: 511 EVQTREVIDGDGWLH-TGDIGLWLPGGRL 538
                        ++ TGDI        +
Sbjct: 392 PDAKGFCDINGRKMYRTGDIVRMDADSSI 420

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 57.9 bits (141), Expect = 6e-09
 Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 71/333 (21%)

Query: 220 EHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHG 279
             + ++     V++     ++ +  ++     P K  D+A + YTSGTTG PKG +L H 
Sbjct: 148 HLIHNIQFNGQVEIFEEDTIKIREGTNLHV--PSKSTDLAYVIYTSGTTGNPKGTMLEHK 205

Query: 280 NLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDL 339
            + +    F   +     D    +  ++                   F          D 
Sbjct: 206 GISNLKVFFENSLNVTEKDRIGQFASIS-------------------F----------DA 236

Query: 340 AVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR 399
           +V +  +F +       +  G +  +    T+ + +    Y ++K+  V    P+     
Sbjct: 237 SVWE--MFMA-------LLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPT-YVVH 286

Query: 400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTE-----TSCIISA 454
           L      ER+   ++ + +  S  SP +++  K       +  YG TE     T+ + + 
Sbjct: 287 L----DPERILS-IQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATK 339

Query: 455 IDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR---GEICVRGPIVFQGYYKNE 511
              G ++   +G+P    +I +VD          Q       GE+C+ G  + +GY+K  
Sbjct: 340 ETIGHSVP--IGAPIQNTQIYIVD-------ENLQLKSVGEAGELCIGGEGLARGYWKRP 390

Query: 512 VQTRE--VID----GDGWLHTGDIGLWLPGGRL 538
             T +  V +    G+    TGD   WL  G +
Sbjct: 391 ELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNI 423

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 209 VHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTT 268
              ++      E    LP T     I       +  S P       P D A I YTSGTT
Sbjct: 562 AACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPAT--AIDPNDPAYIMYTSGTT 619

Query: 269 GTPKGAVLTHGNLI 282
           G PKG + TH N+ 
Sbjct: 620 GKPKGNITTHANIQ 633

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 55.6 bits (135), Expect = 3e-08
 Identities = 18/80 (22%), Positives = 26/80 (32%)

Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
              L        ++ +S  +L      S       K  +   I YTSG+TG PKG  ++ 
Sbjct: 106 AAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISA 165

Query: 279 GNLISNVAGFSLMVQFYPSD 298
            NL S               
Sbjct: 166 ANLQSFTDWICADFPVSGGK 185

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 54.8 bits (133), Expect = 5e-08
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
               P+  +  G+  +    L +   S  +P      + IA I ++SGTTG PK    TH
Sbjct: 131 CSTTPTPAN--GLPCVPVRHLPAAPASVARP--CFAADQIAYINFSSGTTGRPKAIACTH 186

Query: 279 GNLI 282
             + 
Sbjct: 187 AGIT 190

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 219 DEHLP-SLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLT 277
            E  P ++   S V L      +             K +D   I +TSGTTG PKG  ++
Sbjct: 108 IEEFPLTIEGISLVSLSEIESAKLAEMPYE-RTHSVKGDDNYYIIFTSGTTGQPKGVQIS 166

Query: 278 HGNLIS 283
           H NL+S
Sbjct: 167 HDNLLS 172

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 17/70 (24%), Positives = 31/70 (44%)

Query: 238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPS 297
              +   ++P P    K ++   I YTSG+TG PKG  +T+  L+S              
Sbjct: 126 IFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTG 185

Query: 298 DIYMSYLPLA 307
            ++++  P +
Sbjct: 186 QVFLNQAPFS 195

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 57/480 (11%), Positives = 126/480 (26%), Gaps = 170/480 (35%)

Query: 174 PDAVKYVVNHAEIEAIFCIPQTLN-------TLLS--------FISEI--PSVHLIVVVG 216
            D  K +++  EI+ I      ++       TLLS        F+ E+   +   ++   
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 217 GKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCP---PKPEDIATICYTSGTTG---- 269
             ++  PS+ +        Y++ + +  +  Q F      + +    +            
Sbjct: 99  KTEQRQPSMMTR------MYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-----RQALLEL 147

Query: 270 TPKGAVLTHGNLISNVAGF--SLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGF 327
            P   VL  G     V G   + +      D+ +SY     +  +      +++ + +  
Sbjct: 148 RPAKNVLIDG-----VLGSGKTWVA----LDVCLSYKVQCKMDFK------IFW-LNLKN 191

Query: 328 YQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAI 387
                  +++ L  L   I P+     +               LR  L +  Y   +  +
Sbjct: 192 CNSPET-VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCL 247

Query: 388 -----VSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEG 442
                V         +   +                       +  +       C+++  
Sbjct: 248 LVLLNV--------QNAKAW-----------------------NAFN-----LSCKIL-- 269

Query: 443 YGMTETSCIISAIDKG--DNLSGHVGSPNPACEIKLVDVPE--------------MNYTS 486
             +T T        K   D LS           I L                   ++   
Sbjct: 270 --LT-TR------FKQVTDFLSAAT-----TTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 487 EDQPHPRGEICVRGPIV---FQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR 543
           +D P    E+    P          ++ + T      D W H                D+
Sbjct: 316 QDLPR---EVLTTNPRRLSIIAESIRDGLATW-----DNWKHVN-------------CDK 354

Query: 544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKD-WAAS 602
              I + +    + P +   ++       +  ++  S          +   +L   W   
Sbjct: 355 LTTIIESSL-NVLEPAEYRKMF------DRLSVFPPS--------AHIPTILLSLIWFDV 399

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 249 PFCPPKP---EDIATICYTSGTTGTPKGAVLTHG 279
            + P  P   ED   + YTSG+TG PKG   +  
Sbjct: 252 TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTA 285

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 249 PFCPPKP---EDIATICYTSGTTGTPKGAVLTHG 279
           P   P+    ED   I YTSG+TG PKG + T G
Sbjct: 246 PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTG 279

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	666
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.97
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.07
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.04
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.88
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.86
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.72
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	92.95
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	92.76
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	91.67
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	82.17
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	80.09

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=1.8e-80  Score=688.85  Aligned_cols=492  Identities=26%  Similarity=0.376  Sum_probs=419.7

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      |...|+.++|.++++++||++|+++.   ++    .+++||+||+++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus        19 p~~~~l~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~   91 (536)
T 3ni2_A           19 PKNLPLHSYVLENLSNHSSKPCLING---AN----GDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF   91 (536)
T ss_dssp             CSSCCHHHHHTTTGGGSTTSEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCcHHHHHHHHhhcCCCceEEEEC---CC----CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence            44589999999999999999999753   21    256999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (666)
                      |||+++|++++|+++.++.+++.+++++++++++|++....+.+.+..... .++ ++.++....           ....
T Consensus        92 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~-----------~~~~  158 (536)
T 3ni2_A           92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DVK-VMCVDSAPD-----------GCLH  158 (536)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TCE-EEESSCCCT-----------TCEE
T ss_pred             HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cce-EEEecCCCC-----------CccC
Confidence            999999999999999999999999999999999999988777766554332 233 444443211           1245


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc----ccccCCCcEEEEcCChHHHHH
Q 005991          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL----MVQFYPSDIYMSYLPLAHIYE  311 (666)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~  311 (666)
                      ++++...... ..+....+++|+++|+|||||||.||||++||+++++.+.....    .+++.++|++++.+|++|.++
T Consensus       159 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~  237 (536)
T 3ni2_A          159 FSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA  237 (536)
T ss_dssp             THHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred             HHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence            6666544322 22334567899999999999999999999999999887765433    356789999999999999999


Q ss_pred             HHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005991          312 RAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (666)
Q Consensus       312 ~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (666)
                      +.. ++.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+...                           
T Consensus       238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------  290 (536)
T 3ni2_A          238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD---------------------------  290 (536)
T ss_dssp             HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC---------------------------
T ss_pred             HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc---------------------------
Confidence            966 678899999999987 799999999999999999999999988765210                           


Q ss_pred             CCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhcc-----CCCCCCCC
Q 005991          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAI-----DKGDNLSG  463 (666)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~-----~~~~~~~~  463 (666)
                             .+.        ...+++|.+++||+++++++.+++++.+ ++++++.||+||++.+++..     .......+
T Consensus       291 -------~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~  355 (536)
T 3ni2_A          291 -------LDK--------HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPG  355 (536)
T ss_dssp             -------GGG--------SCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTT
T ss_pred             -------ccc--------CCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCC
Confidence                   000        0114899999999999999999999988 89999999999998765433     22235678


Q ss_pred             CccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 005991          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR  543 (666)
Q Consensus       464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR  543 (666)
                      ++|+|+++++++|+|++++..++.++   .|||||+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus       356 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR  432 (536)
T 3ni2_A          356 ACGTVVRNAEMKIVDPETGASLPRNQ---PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDR  432 (536)
T ss_dssp             CCCEECSSCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred             CeeEeCCCcEEEEEeCCCCcCCCCCC---ccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEec
Confidence            99999999999999977777777665   899999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccc
Q 005991          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFR  614 (666)
Q Consensus       544 ~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~  614 (666)
                      +||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.      .++++++++++ ++     .|+
T Consensus       433 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~-l~-----~~~  505 (536)
T 3ni2_A          433 LKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQ-VI-----FYK  505 (536)
T ss_dssp             CSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTT-SC-----GGG
T ss_pred             ccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHh-cc-----CCc
Confidence            9999998 8999999999999999999999999986543   5789999863      47899999998 98     999


Q ss_pred             cCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          615 ANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       615 ~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +|+.+.+++ +|++.+||++|++|++.
T Consensus       506 ~p~~i~~v~~lP~t~~GKi~R~~L~~~  532 (536)
T 3ni2_A          506 RIKRVFFIEAIPKAPSGKILRKNLKEK  532 (536)
T ss_dssp             CCSEEEECSCCCBCTTSCBCHHHHHTC
T ss_pred             cccEEEEEecCCCCCCCCeeHHHHHHH
Confidence            999999995 88888899999999875

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=4e-80  Score=688.06  Aligned_cols=496  Identities=22%  Similarity=0.318  Sum_probs=395.3

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCc--cCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGT--VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~--~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  154 (666)
                      +..|+.++|.++++++||++|+++.   ++.  .+..+++||+||+++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus        17 ~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~   93 (549)
T 3g7s_A           17 PKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT   93 (549)
T ss_dssp             CCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence            4578999999999999999999886   421  22346799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEE
Q 005991          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (666)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~  234 (666)
                      +|||+++|+++|||++.++.+++.+++++++++++|++....+.+.......+ ++.++..+..              ..
T Consensus        94 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~  158 (549)
T 3g7s_A           94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE--------------VN  158 (549)
T ss_dssp             HHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS--------------SS
T ss_pred             HHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC--------------Cc
Confidence            99999999999999999999999999999999999999988887777665554 5556655431              13


Q ss_pred             ehHHHHhcCCCCCCCCCCCCC-CCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHH
Q 005991          235 SYLQLQSQGCSSPQPFCPPKP-EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA  313 (666)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~  313 (666)
                      ++.++...+.... +.....+ +|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.
T Consensus       159 ~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~  237 (549)
T 3g7s_A          159 SLSEVMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFG  237 (549)
T ss_dssp             CHHHHHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHH
T ss_pred             CHHHHHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHH
Confidence            5666665543322 2223334 8999999999999999999999999999998888888999999999999999999998


Q ss_pred             HHHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991          314 NQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (666)
Q Consensus       314 ~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (666)
                      ..+.++..|+++++.+ +++..+++.|+++++|+++++|+++..|.+.......                          
T Consensus       238 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------------  291 (549)
T 3g7s_A          238 LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK--------------------------  291 (549)
T ss_dssp             HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC--------------------------
T ss_pred             HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc--------------------------
Confidence            8778999999999987 7999999999999999999999999998774321100                          


Q ss_pred             CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHH----hC---CccccCcccchhhhhhhccCCCC-CCCCC
Q 005991          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC----FG---CQVMEGYGMTETSCIISAIDKGD-NLSGH  464 (666)
Q Consensus       393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~----~~---~~v~~~YG~TE~~~~~~~~~~~~-~~~~~  464 (666)
                      .              ...+++|.+++||+++++++.+.+.+.    ++   +++++.||+||++.+++...... ...++
T Consensus       292 ~--------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  357 (549)
T 3g7s_A          292 T--------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTT  357 (549)
T ss_dssp             C--------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTS
T ss_pred             c--------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCC
Confidence            0              001489999999999999999999887    56   88999999999998776655433 56788


Q ss_pred             ccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC--CCC--eeecccEEEEecCCcEEE
Q 005991          465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID--GDG--WLHTGDIGLWLPGGRLKI  540 (666)
Q Consensus       465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~--~~g--w~~TGDlg~~~~dG~l~i  540 (666)
                      +|+|+++++++|+|+++++.++.|+   .|||||+|++++.|||++|+.|+++|.  .+|  ||+|||+|++|+||+|+|
T Consensus       358 ~G~p~~~~~~~i~d~~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~  434 (549)
T 3g7s_A          358 QGVPMSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHF  434 (549)
T ss_dssp             CCEECTTCEEEEECSSSCCEECTTC---CEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEE
T ss_pred             ccccCCCCEEEEEeCCCCcCCCCCC---ceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEE
Confidence            9999999999999977778777765   899999999999999999999999983  567  999999999999999999


Q ss_pred             EccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC--------hhHHHHHHHHcCCCccc
Q 005991          541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD--------PDVLKDWAASQGIKVIY  609 (666)
Q Consensus       541 ~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~--------~~~l~~~~~~~~l~~~~  609 (666)
                      +||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|+++        .++++++++++ |+   
T Consensus       435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~-L~---  509 (549)
T 3g7s_A          435 QDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRER-IS---  509 (549)
T ss_dssp             EEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTT-CC---
T ss_pred             eccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHh-cc---
Confidence            9999999997 8999999999999999999999999997654   5788999863        46899999998 98   


Q ss_pred             ccccccCcchhHHH-HHHHHhhhhhhhhhccch
Q 005991          610 CFSFRANSHVIFIA-LIHNLCQLYSSKELFRSR  641 (666)
Q Consensus       610 ~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~  641 (666)
                        .|++|+.|.+++ +|++.+||++|++|++..
T Consensus       510 --~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~  540 (549)
T 3g7s_A          510 --GYKRVREVEFVEELPRTASGKLLRRLLREKE  540 (549)
T ss_dssp             -------CCCCEEEECC----------------
T ss_pred             --CcccceEEEEeccCCCCCCcCEeHHHHHHHh
Confidence              999999999995 899999999999998874

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=1.6e-79  Score=681.75  Aligned_cols=492  Identities=22%  Similarity=0.305  Sum_probs=388.7

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      ..|+.++|.++++++||++|+.+.   +.  ++.+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus        17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA   91 (541)
T 1v25_A           17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA   91 (541)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            368999999999999999999764   21  2356799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehH
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (666)
                      |+++|+++||+++.++.+++.+++++++++++|++....+.+......++.++.++.++.....          ...+++
T Consensus        92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~  161 (541)
T 1v25_A           92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE----------GYLAYE  161 (541)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT----------TCEEHH
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCc----------ccccHH
Confidence            9999999999999999999999999999999999998887777777777777777776543210          124566


Q ss_pred             HHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhh--cccccccCCCcEEEEcCChHHHHHHHHH
Q 005991          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAG--FSLMVQFYPSDIYMSYLPLAHIYERANQ  315 (666)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~pl~h~~~~~~~  315 (666)
                      ++......    .....++++++|+|||||||.||||++||+++++....  ....++++++|++++++|++|.+++...
T Consensus       162 ~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~  237 (541)
T 1v25_A          162 EALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP  237 (541)
T ss_dssp             HHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHH
T ss_pred             HHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHH
Confidence            66543322    13456789999999999999999999999999877655  2345678899999999999999999777


Q ss_pred             HHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005991          316 IVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (666)
Q Consensus       316 ~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (666)
                      +.+++.|+++++.+  .++..+++.++++++|+++++|+++..|.+......                            
T Consensus       238 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------  289 (541)
T 1v25_A          238 YAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG----------------------------  289 (541)
T ss_dssp             HHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------------
T ss_pred             HHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC----------------------------
Confidence            88999999999986  599999999999999999999999999876432110                            


Q ss_pred             ChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC-----------CCC
Q 005991          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-----------NLS  462 (666)
Q Consensus       394 ~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----------~~~  462 (666)
                                    ...+++|.+++||+++++++.+++ +.+|+++++.||+||++.+++......           ...
T Consensus       290 --------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (541)
T 1v25_A          290 --------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK  354 (541)
T ss_dssp             --------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHH
T ss_pred             --------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCcccccccc
Confidence                          001489999999999999999999 568999999999999987666543321           134


Q ss_pred             CCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 005991          463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID  542 (666)
Q Consensus       463 ~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G  542 (666)
                      +++|+|+|+++++|+| ++++.++.+. ++.|||+|+||+++.|||++|+.|+++|..+|||+|||+|++|+||+|+|+|
T Consensus       355 ~~~G~p~~~~~~~i~d-~~g~~~~~~~-~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~G  432 (541)
T 1v25_A          355 AKTGLPIPLVRLRVAD-EEGRPVPKDG-KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKD  432 (541)
T ss_dssp             TSCBEECTTCEEEEEC-TTSCBCCSSS-CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEE
T ss_pred             CCCCCcCCCcEEEEEC-CCCCCCCCCC-CcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEee
Confidence            7899999999999999 5556555321 1379999999999999999999999999879999999999999999999999


Q ss_pred             cCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC-----hhHHHHHHHH-cCCCccccccc
Q 005991          543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD-----PDVLKDWAAS-QGIKVIYCFSF  613 (666)
Q Consensus       543 R~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~~~~~-~~l~~~~~~~~  613 (666)
                      |+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|+++     .+++++++++ + |+     .|
T Consensus       433 R~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~-L~-----~~  505 (541)
T 1v25_A          433 RLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAG-FA-----KW  505 (541)
T ss_dssp             ESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------C-CC-----TT
T ss_pred             cccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHhcc-Cc-----cc
Confidence            99999997 8999999999999999999999999997654   5789999863     3578888888 5 88     99


Q ss_pred             ccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          614 RANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       614 ~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++|+.+++++ +|++.+||++|++|++.
T Consensus       506 ~~P~~i~~v~~lP~t~~GKi~r~~L~~~  533 (541)
T 1v25_A          506 QLPDAYVFAEEIPRTSAGKFLKRALREQ  533 (541)
T ss_dssp             TSCSBC--------------CCTTHHHH
T ss_pred             cCCcEEEEeCCCCCCCccCeeHHHHHHH
Confidence            9999999995 88888899999999875

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=4.4e-80  Score=687.94  Aligned_cols=500  Identities=24%  Similarity=0.331  Sum_probs=342.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      +..|+.++|.++++++||++|++...  ++  ...+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus        18 ~~~tl~~~l~~~a~~~p~~~a~~a~~--~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   93 (550)
T 3rix_A           18 EDGTAGEQLHKAMKRYALVPGTIAFT--DA--HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL   93 (550)
T ss_dssp             CCSCHHHHHHHHHHHHHTSTTCEEEE--ET--TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred             ccCCHHHHHHHHHHhCCCCceEEEee--ec--CCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence            45799999999999999999976321  21  112579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ||+++|++++|+++.++.+++.+++++++++++|++......+......++.++.++.++.....         ....++
T Consensus        94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  164 (550)
T 3rix_A           94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSM  164 (550)
T ss_dssp             HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBCBH
T ss_pred             HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc---------cCcccH
Confidence            99999999999999999999999999999999999999888888888888888888887653211         012355


Q ss_pred             HHHHhcCCCC------CCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc---cccCCCcEEEEcCChH
Q 005991          237 LQLQSQGCSS------PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLA  307 (666)
Q Consensus       237 ~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~  307 (666)
                      .++.......      ..+.....++++++|+|||||||.||||++||+++.+.+......   .++.++|++++++|++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~  244 (550)
T 3rix_A          165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH  244 (550)
T ss_dssp             HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred             HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHH
Confidence            5554432211      111122346889999999999999999999999998887766554   5678999999999999


Q ss_pred             HHHHHHHHHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005991          308 HIYERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA  386 (666)
Q Consensus       308 h~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~  386 (666)
                      |.+++...+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..|.+....                       
T Consensus       245 ~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------------------  301 (550)
T 3rix_A          245 HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI-----------------------  301 (550)
T ss_dssp             SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGG-----------------------
T ss_pred             HHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccc-----------------------
Confidence            9999988888999999999987 7999999999999999999999999988652100                       


Q ss_pred             HHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCc-cccCcccchhhhhhhccCCCCCCCCCc
Q 005991          387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHV  465 (666)
Q Consensus       387 ~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~-v~~~YG~TE~~~~~~~~~~~~~~~~~v  465 (666)
                                 +.        ...+++|.+++||+++++++.+++.+.++.. +++.||+||+++.++.........+++
T Consensus       302 -----------~~--------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v  362 (550)
T 3rix_A          302 -----------DK--------YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV  362 (550)
T ss_dssp             -----------GG--------SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEE
T ss_pred             -----------cc--------cCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCc
Confidence                       00        0014899999999999999999999988875 899999999998877776666778999


Q ss_pred             cCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCC
Q 005991          466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK  545 (666)
Q Consensus       466 G~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~  545 (666)
                      |+|+|+++++|+|++++..++.++   .|||||+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+|
T Consensus       363 G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~d  439 (550)
T 3rix_A          363 GKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLK  439 (550)
T ss_dssp             EEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----
T ss_pred             ccccCCcEEEEEeCCCCcCCCCCC---CeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecch
Confidence            999999999999977777777665   89999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccc-c
Q 005991          546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFR-A  615 (666)
Q Consensus       546 d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~-~  615 (666)
                      |+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.      +++++++++++ ++     .++ +
T Consensus       440 d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~-l~-----~~~~~  512 (550)
T 3rix_A          440 SLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQ-VT-----TAKKL  512 (550)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             heeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHh-cc-----ccccc
Confidence            99997 8999999999999999999999999987654   5788888864      35788888888 76     664 5


Q ss_pred             CcchhHHH-HHHHHhhhhhhhhhccch
Q 005991          616 NSHVIFIA-LIHNLCQLYSSKELFRSR  641 (666)
Q Consensus       616 p~~i~~v~-~~~~~~gK~~r~~l~~~~  641 (666)
                      |..|++++ +|++.+||++|++|++.-
T Consensus       513 ~~~i~~v~~lP~t~~GKi~r~~L~~~~  539 (550)
T 3rix_A          513 RGGVVFVDEVPKGLTGKLDARKIREIL  539 (550)
T ss_dssp             ---------------------------
T ss_pred             CCceEEEeecCCCCCcceeHHHHHHHH
Confidence            55688885 888888999999998873

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=3.8e-79  Score=682.66  Aligned_cols=496  Identities=20%  Similarity=0.250  Sum_probs=407.7

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ...+..+++|+++|+++||++|+++.   +. .++.+++||+||.++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus        53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~  128 (580)
T 3etc_A           53 ENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM  128 (580)
T ss_dssp             SSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred             ccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            34566679999999999999999876   32 244678999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH--HHHHHhhhcCCCc-eEEEEeCCCCCCCCCCCCCCCcE
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL--NTLLSFISEIPSV-HLIVVVGGKDEHLPSLPSTSGVK  232 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~  232 (666)
                      |||+++|+++||+++.++.+++.+++++++++++|++.+..  ..+.+....++.+ ..++.++....          ..
T Consensus       129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~  198 (580)
T 3etc_A          129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL----------EG  198 (580)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC----------TT
T ss_pred             HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc----------cc
Confidence            99999999999999999999999999999999999987654  5565555555555 45555543211          11


Q ss_pred             EEehHHHHhcCCCCCCCC---CCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHH
Q 005991          233 LISYLQLQSQGCSSPQPF---CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI  309 (666)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~  309 (666)
                      ..++.+............   ....++|+++|+|||||||.||||+++|.+++..+.......++.+++++++.+|++|.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (580)
T 3etc_A          199 WIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWG  278 (580)
T ss_dssp             CEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTST
T ss_pred             cccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHH
Confidence            356666665443322111   24678999999999999999999999999998887766666788999999999999999


Q ss_pred             HHHHH-HHHHHHhCcEEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 005991          310 YERAN-QIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ  385 (666)
Q Consensus       310 ~~~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~  385 (666)
                      .+.+. ++.++..|+++++.+   +++..+++.|+++++|+++++|+++..|.+...                       
T Consensus       279 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-----------------------  335 (580)
T 3etc_A          279 KCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL-----------------------  335 (580)
T ss_dssp             HHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC-----------------------
T ss_pred             HHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc-----------------------
Confidence            88876 677899999998873   799999999999999999999999988765200                       


Q ss_pred             HHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCc
Q 005991          386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV  465 (666)
Q Consensus       386 ~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v  465 (666)
                                          .....+++|.+++||+++++++.++|.+.+|++++++||+||++..++..+......+++
T Consensus       336 --------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~  395 (580)
T 3etc_A          336 --------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSI  395 (580)
T ss_dssp             -----------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCC
T ss_pred             --------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCcc
Confidence                                000114899999999999999999999989999999999999987766665556778999


Q ss_pred             cCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeC-----CCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEE
Q 005991          466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG-----PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI  540 (666)
Q Consensus       466 G~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g-----~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i  540 (666)
                      |+|+|+++++|+| ++++.++.|+   .|||+|+|     ++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|
T Consensus       396 G~p~~~~~v~ivd-~~g~~~~~g~---~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~  470 (580)
T 3etc_A          396 GKPTPGYKIELMD-RDGRLCEVGE---EGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWF  470 (580)
T ss_dssp             BEECTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEE
T ss_pred             ccCCCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEE
Confidence            9999999999999 5677776665   89999997     789999999999999999 699999999999999999999


Q ss_pred             EccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------hHHHHHHHHcCCCcc
Q 005991          541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------DVLKDWAASQGIKVI  608 (666)
Q Consensus       541 ~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~~l~~~  608 (666)
                      +||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.+         ++++++++++ ++  
T Consensus       471 ~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~-l~--  546 (580)
T 3etc_A          471 VGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNV-TA--  546 (580)
T ss_dssp             EEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH-SC--
T ss_pred             EecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhh-CC--
Confidence            9999999998 7999999999999999999999999997654   57889998643         4788999998 88  


Q ss_pred             cccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          609 YCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       609 ~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                         .|++|+.|.+++ +|++.+||++|++|++.
T Consensus       547 ---~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~  576 (580)
T 3etc_A          547 ---PYKYPRIIEFVPELPKTISGKIRRVEIRDK  576 (580)
T ss_dssp             ---GGGCCSEEEEECC-----------------
T ss_pred             ---CccCCeEEEEeCCCCCCCCcCCcHHHHHhH
Confidence               999999999985 89999999999999875

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.1e-79  Score=682.56  Aligned_cols=486  Identities=21%  Similarity=0.266  Sum_probs=411.9

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      ..|+.++|.++++++||++|+.+.   +      +++||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   94 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA   94 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            368999999999999999999753   2      4699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH-----HHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcE
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~  232 (666)
                      |+++|+++||+++.++.+++.+++++++++++|++....     ..+......++.++.++..++..             
T Consensus        95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  161 (539)
T 1mdb_A           95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE-------------  161 (539)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred             HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence            999999999999999999999999999999999987532     23333444556666666554321             


Q ss_pred             EEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHH
Q 005991          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER  312 (666)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  312 (666)
                        .+.++...... +.+.....++|+++|+|||||||.||||++||+++.+.+......++++++|++++++|++|.+++
T Consensus       162 --~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~  238 (539)
T 1mdb_A          162 --EFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL  238 (539)
T ss_dssp             --TSEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred             --chhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence              11122221111 112234578999999999999999999999999999998887777889999999999999999998


Q ss_pred             HH--HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005991          313 AN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (666)
Q Consensus       313 ~~--~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (666)
                      ..  ++.+++.|+++++.+ +++..+++.|+++++|++.++|+++..+.+......                        
T Consensus       239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------  294 (539)
T 1mdb_A          239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------------  294 (539)
T ss_dssp             HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC------------------------
T ss_pred             hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC------------------------
Confidence            74  778999999999987 799999999999999999999999998876421100                        


Q ss_pred             CCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-CCCCCCccCC
Q 005991          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSP  468 (666)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p  468 (666)
                                        ...+++|.+++||+++++++.+++++.+|+++++.||+||++..++..... ....+++|+|
T Consensus       295 ------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p  356 (539)
T 1mdb_A          295 ------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKP  356 (539)
T ss_dssp             ------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEE
T ss_pred             ------------------CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcc
Confidence                              001489999999999999999999998999999999999965433221111 1234689999


Q ss_pred             ccC-cEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCe
Q 005991          469 NPA-CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNI  547 (666)
Q Consensus       469 ~~~-~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~  547 (666)
                      +++ .+++|+| ++++.++.|+   .|||+|+|+++++|||++|+.|+++|..+|||+|||+|++|+||+|+|+||+||+
T Consensus       357 ~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~  432 (539)
T 1mdb_A          357 MSPYDESRVWD-DHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ  432 (539)
T ss_dssp             SSTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGC
T ss_pred             cCCCceEEEEC-CCCCCCcCCC---cceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccce
Confidence            976 5899999 5667676665   8999999999999999999999999988999999999999999999999999999


Q ss_pred             EEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC-----hhHHHHHHHHcCCCcccccccccCcch
Q 005991          548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD-----PDVLKDWAASQGIKVIYCFSFRANSHV  619 (666)
Q Consensus       548 ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~~~~~~~l~~~~~~~~~~p~~i  619 (666)
                      ||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|+++     .+++++++++++|+     .|++|+.|
T Consensus       433 ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~-----~~~~P~~i  506 (539)
T 1mdb_A          433 INR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLA-----AYKIPDRV  506 (539)
T ss_dssp             EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCC-----GGGSCSEE
T ss_pred             EEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhCCCC-----cccCCCEE
Confidence            996 8999999999999999999999999997654   5789999864     47899999987688     99999999


Q ss_pred             hHHH-HHHHHhhhhhhhhhccc
Q 005991          620 IFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       620 ~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      .+++ +|++.+||++|++|++.
T Consensus       507 ~~v~~lP~t~~GKi~r~~L~~~  528 (539)
T 1mdb_A          507 EFVESFPQTGVGKVSKKALREA  528 (539)
T ss_dssp             EECSSCCBCTTSCBCHHHHHHH
T ss_pred             EEeccCCCCCCcCEeHHHHHHH
Confidence            9995 88888899999999876

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=2e-79  Score=681.41  Aligned_cols=491  Identities=18%  Similarity=0.220  Sum_probs=339.3

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...|+.++|.++++++||++|+.+.         .+.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus        28 ~~~tl~~~l~~~a~~~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l   98 (544)
T 3o83_A           28 IDQPLTRILTVGVQSHPHSLAIICG---------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF   98 (544)
T ss_dssp             CCCCTTHHHHHHHHHCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEcC---------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence            3478999999999999999999753         2569999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH-----HHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCc
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV  231 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~  231 (666)
                      ||+++|++++|+++.++.+++.+++++++++++|++....     ..+.......+....++.++....           
T Consensus        99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  167 (544)
T 3o83_A           99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT-----------  167 (544)
T ss_dssp             HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred             HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence            9999999999999999999999999999999999987653     333444445556666666654211           


Q ss_pred             EEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHH
Q 005991          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYE  311 (666)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~  311 (666)
                       ...+.++.........+.....++++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.++
T Consensus       168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~  246 (544)
T 3o83_A          168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM  246 (544)
T ss_dssp             -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred             -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence             0245555544333222334567899999999999999999999999999999988888889999999999999999999


Q ss_pred             HHH--HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005991          312 RAN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV  388 (666)
Q Consensus       312 ~~~--~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~  388 (666)
                      +..  ++.++..|+++++.+ +++..+++.++++++|++.++|+++..+++......                       
T Consensus       247 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------  303 (544)
T 3o83_A          247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK-----------------------  303 (544)
T ss_dssp             HHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-----------------------
T ss_pred             cchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-----------------------
Confidence            875  778899999999987 799999999999999999999999998876421100                       


Q ss_pred             cCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC-CCCCCccC
Q 005991          389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGS  467 (666)
Q Consensus       389 ~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~  467 (666)
                                         ...+++|.+++||+++++++.+++.+.+|+++++.||+||++..++...... ...+++|+
T Consensus       304 -------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~  364 (544)
T 3o83_A          304 -------------------DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGR  364 (544)
T ss_dssp             -------------------HHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCE
T ss_pred             -------------------ccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCce
Confidence                               0004899999999999999999999989999999999999875444322211 23468999


Q ss_pred             Cc-cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCC
Q 005991          468 PN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN  546 (666)
Q Consensus       468 p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d  546 (666)
                      |+ ++++++|+| ++++.++.|+   .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||
T Consensus       365 p~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd  440 (544)
T 3o83_A          365 PISSDDEIKIVD-EQYREVPEGE---IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKD  440 (544)
T ss_dssp             ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-
T ss_pred             ecCCCcEEEEEC-CCCCCCCCCC---eeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCC
Confidence            96 899999999 6777777665   899999999999999999999999999999999999999999999999999999


Q ss_pred             eEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC-----hhHHHHHHHHcCCCcccccccccCcc
Q 005991          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD-----PDVLKDWAASQGIKVIYCFSFRANSH  618 (666)
Q Consensus       547 ~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~~~~~~~l~~~~~~~~~~p~~  618 (666)
                      +||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.     .+++++++++..++     .|++|+.
T Consensus       441 ~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~~l~-----~~~~P~~  514 (544)
T 3o83_A          441 QINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIA-----QYKLPDQ  514 (544)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHhCCCC-----cccCCcE
Confidence            9996 8999999999999999999999999987654   5788998864     35677888873377     9999999


Q ss_pred             hhHHH-HHHHHhhhhhhhhhccc
Q 005991          619 VIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       619 i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      |.+++ +|++.+||++|++|++.
T Consensus       515 i~~v~~lP~t~~GKi~r~~L~~~  537 (544)
T 3o83_A          515 IKLIESLPLTAVGKVDKKQLRSI  537 (544)
T ss_dssp             -----------------------
T ss_pred             EEEeccCCCCCCCCCcHHHHHHH
Confidence            99995 88888899999999875

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=2.8e-79  Score=675.93  Aligned_cols=487  Identities=20%  Similarity=0.255  Sum_probs=411.2

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991           75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (666)
Q Consensus        75 ~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  154 (666)
                      .+...|+.++|.++++++||++|+++.   +    ..+++||+||+++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~   84 (517)
T 3r44_A           12 DDKMKNIGWMLRQRATVSPRLQAYVEP---S----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL   84 (517)
T ss_dssp             CGGGGCHHHHHHHHHHHSTTSEEEEEG---G----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred             cccccCHHHHHHHHHHhCCCCeEEEeC---C----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence            456789999999999999999999764   2    235799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEE
Q 005991          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (666)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~  234 (666)
                      +|||+++|+++||+++.++.+++.+++++++++++|++......+.......+....++....               ..
T Consensus        85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~  149 (517)
T 3r44_A           85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG---------------AD  149 (517)
T ss_dssp             HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE---------------HH
T ss_pred             HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC---------------cc
Confidence            999999999999999999999999999999999999999887777665544332221111100               01


Q ss_pred             ehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH
Q 005991          235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN  314 (666)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (666)
                      ++.+....... ..+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++..
T Consensus       150 ~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~  228 (517)
T 3r44_A          150 SLAERLRSAAA-DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT  228 (517)
T ss_dssp             HHHHHHHHCCC-CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH
T ss_pred             cHHHHhhccCc-CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH
Confidence            23333333222 22334567899999999999999999999999999999988888889999999999999999999988


Q ss_pred             HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005991          315 QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (666)
Q Consensus       315 ~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (666)
                      .+.+++.|+++++.+ +++..+++.++++++|++.++|+++..|.+....                              
T Consensus       229 ~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------  278 (517)
T 3r44_A          229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF------------------------------  278 (517)
T ss_dssp             HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH------------------------------
T ss_pred             HHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc------------------------------
Confidence            666666999999887 7999999999999999999999999988663110                              


Q ss_pred             ChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC--CCCCCCccCCccC
Q 005991          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--DNLSGHVGSPNPA  471 (666)
Q Consensus       394 ~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~  471 (666)
                                  .....+++|.+++||+++++++.+.+... +++++++||+||+++.++.....  ....+++|+|.++
T Consensus       279 ------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~  345 (517)
T 3r44_A          279 ------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMF  345 (517)
T ss_dssp             ------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTT
T ss_pred             ------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCC
Confidence                        11112589999999999999999999886 99999999999998766654433  3567899999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcC
Q 005991          472 CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA  551 (666)
Q Consensus       472 ~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~  551 (666)
                      ++++|+| +++...+.+    .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+||+||+ 
T Consensus       346 ~~~~i~d-~~~~~~~~g----~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-  418 (517)
T 3r44_A          346 TDVAVRG-DDGVIREHG----EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS-  418 (517)
T ss_dssp             EEEEEEC-TTSCEESSE----EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEE-
T ss_pred             eEEEEEC-CCCCCCCCC----CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEE-
Confidence            9999999 454444433    69999999999999999999999999 7999999999999999999999999999997 


Q ss_pred             CeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc-----ChhHHHHHHHHcCCCcccccccccCcchhHHH
Q 005991          552 QGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV-----DPDVLKDWAASQGIKVIYCFSFRANSHVIFIA  623 (666)
Q Consensus       552 ~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~  623 (666)
                      +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|+.     ++++++++++++ |+     .|++|+.|.+++
T Consensus       419 ~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~-L~-----~~~~P~~i~~v~  492 (517)
T 3r44_A          419 GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTR-LA-----RYKLPKKVIFAE  492 (517)
T ss_dssp             TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHH-SC-----GGGSCSEEEECS
T ss_pred             CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHh-CC-----CCCCCCEEEEEC
Confidence            8999999999999999999999999987654   467777753     357899999999 98     999999999995


Q ss_pred             -HHHHHhhhhhhhhhccc
Q 005991          624 -LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       624 -~~~~~~gK~~r~~l~~~  640 (666)
                       +|++.+||++|++|++.
T Consensus       493 ~lP~t~~GKi~R~~L~~~  510 (517)
T 3r44_A          493 AIPRNPTGKILKTVLREQ  510 (517)
T ss_dssp             CCCBCTTCCBCHHHHHHH
T ss_pred             CCCCCCCcCccHHHHHHH
Confidence             88888899999999875

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.6e-79  Score=675.53  Aligned_cols=482  Identities=26%  Similarity=0.354  Sum_probs=407.1

Q ss_pred             HHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 005991           83 DNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS  162 (666)
Q Consensus        83 ~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G  162 (666)
                      ++|.+.++++||++|+...   +.   ..+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++|||+++|
T Consensus         4 ~l~~~~a~~~p~~~a~~~~---~~---~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   77 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIE---TA---AGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG   77 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEE---ET---TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhCCCCceEEEe---cC---CCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            5788999999999999764   11   12469999999999999999999999999999999999999999999999999


Q ss_pred             CeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhc
Q 005991          163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ  242 (666)
Q Consensus       163 ~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (666)
                      +++||+++.++.+++.+++++++++++|++....+.+.........  .++.++....             ..+.+....
T Consensus        78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~  142 (503)
T 4fuq_A           78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------------GSLTDAAAG  142 (503)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC-------------SHHHHHHHT
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc-------------cccchhhhc
Confidence            9999999999999999999999999999998765544443333221  2333332110             112222221


Q ss_pred             CCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH-HHHHHHh
Q 005991          243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYY  321 (666)
Q Consensus       243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~  321 (666)
                      . ....+.....++|+++|+|||||||.||||++||+++.+.+......++++++|++++.+|++|.+++.. .+.+++.
T Consensus       143 ~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~  221 (503)
T 4fuq_A          143 A-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA  221 (503)
T ss_dssp             S-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHT
T ss_pred             C-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHh
Confidence            1 1122334567899999999999999999999999999999988888889999999999999999999765 6678999


Q ss_pred             CcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHH
Q 005991          322 GVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL  400 (666)
Q Consensus       322 G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~  400 (666)
                      |+++++.+ +++..+++.++  ++|+++++|+++..+++....                                     
T Consensus       222 g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~-------------------------------------  262 (503)
T 4fuq_A          222 RGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRL-------------------------------------  262 (503)
T ss_dssp             TCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTC-------------------------------------
T ss_pred             CCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCc-------------------------------------
Confidence            99999887 79999999998  899999999999988652100                                     


Q ss_pred             hhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecC
Q 005991          401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVP  480 (666)
Q Consensus       401 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~  480 (666)
                           .....+++|.+++||+++++++.+.|.+.+|++++|.||+||++..++.........+++|+|+++++++|+|++
T Consensus       263 -----~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~  337 (503)
T 4fuq_A          263 -----TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPE  337 (503)
T ss_dssp             -----STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTT
T ss_pred             -----cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECC
Confidence                 000114899999999999999999999999999999999999987655444445667899999999999999977


Q ss_pred             CCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHH
Q 005991          481 EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEK  560 (666)
Q Consensus       481 ~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~e  560 (666)
                      +++.++.|+   .|||+|+|++++.|||++|+.|+++|..+|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|
T Consensus       338 ~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~e  413 (503)
T 4fuq_A          338 TGKELPRGD---IGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-GGFNVYPKE  413 (503)
T ss_dssp             TCCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-TTEEECHHH
T ss_pred             CCCCCcCCC---ceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-CCEEECHHH
Confidence            778777775   8999999999999999999999999988999999999999999999999999999997 899999999


Q ss_pred             HHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhh
Q 005991          561 IENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQ  630 (666)
Q Consensus       561 IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~g  630 (666)
                      ||++|.+||+|.+|+|++.++.   +.++|+|+++      .++++++++++ |+     .|++|+.|.+++ +|++.+|
T Consensus       414 IE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~-L~-----~~~~P~~i~~v~~lP~t~~G  487 (503)
T 4fuq_A          414 IESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQ-LA-----KFKMPKKVIFVDDLPRNTMG  487 (503)
T ss_dssp             HHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTT-BC-----GGGCCSEEEEESCCCBCTTS
T ss_pred             HHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhh-cc-----cCCCCCEEEEECCCCCCccc
Confidence            9999999999999999987643   5788999864      46899999988 88     999999999995 8888889


Q ss_pred             hhhhhhhccc
Q 005991          631 LYSSKELFRS  640 (666)
Q Consensus       631 K~~r~~l~~~  640 (666)
                      |++|++|++.
T Consensus       488 Ki~R~~L~~~  497 (503)
T 4fuq_A          488 KVQKNVLRET  497 (503)
T ss_dssp             CBCHHHHHHH
T ss_pred             ceeHHHHHHH
Confidence            9999999876

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=8.2e-79  Score=676.67  Aligned_cols=494  Identities=23%  Similarity=0.298  Sum_probs=418.7

Q ss_pred             CCCCHHH-HHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           77 EIGTLHD-NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        77 ~~~tl~~-~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ...|+.+ +|.++++++ |++|+++.   +    ..+++||+||+++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus        23 ~~~~l~~~~l~~~~~~~-~~~A~~~~---~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~   94 (548)
T 2d1s_A           23 GSAGTQLRKYMERYAKL-GAIAFTNA---V----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPV   94 (548)
T ss_dssp             SCHHHHHHHHHHHHHHH-TCEEEEET---T----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred             CcCcHHHHHHHhhhccc-CCceEEEc---C----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Confidence            3458999 899999999 99999752   1    1256999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (666)
                      |||+++|++++|+++.++.+++.+++++++++++|++....+.+......++....++.++.....       .  ...+
T Consensus        95 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~  165 (548)
T 2d1s_A           95 IAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDY-------R--GYQC  165 (548)
T ss_dssp             HHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCB-------T--TBCB
T ss_pred             HHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccc-------c--cccc
Confidence            999999999999999999999999999999999999998877776666566655666665432100       0  1235


Q ss_pred             hHHHHhcCCCCCCCCCCCC-----C-CCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc---cccCCCcEEEEcCCh
Q 005991          236 YLQLQSQGCSSPQPFCPPK-----P-EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPL  306 (666)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl  306 (666)
                      |+++...+.....+.....     + +++++|+|||||||.||||++||+++.+.+......   +++.++|++++++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  245 (548)
T 2d1s_A          166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF  245 (548)
T ss_dssp             HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred             HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence            6666554322101111122     4 899999999999999999999999999888776665   678899999999999


Q ss_pred             HHHHHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005991          307 AHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (666)
Q Consensus       307 ~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (666)
                      +|.+++.. ++.++ .|+++++.+ +++..+++.|+++++|+++++|+++..|.+...                      
T Consensus       246 ~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------  302 (548)
T 2d1s_A          246 HHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL----------------------  302 (548)
T ss_dssp             TSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC----------------------
T ss_pred             HHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc----------------------
Confidence            99999987 45566 999999887 799999999999999999999999998865200                      


Q ss_pred             HHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCCCCCC
Q 005991          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGDNLSG  463 (666)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~  463 (666)
                                  .+.        ...+++|.+++||+++++++.+++.+.+ ++.+++.||+||++..++.........+
T Consensus       303 ------------~~~--------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  362 (548)
T 2d1s_A          303 ------------LNK--------YDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPG  362 (548)
T ss_dssp             ------------GGG--------SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTT
T ss_pred             ------------ccc--------ccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCC
Confidence                        000        0014899999999999999999999988 6889999999999877666544446678


Q ss_pred             CccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 005991          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR  543 (666)
Q Consensus       464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR  543 (666)
                      ++|+|+|+++++|+|+++++.++.|+   .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus       363 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR  439 (548)
T 2d1s_A          363 ASGKVVPLFKAKVIDLDTKKSLGPNR---RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR  439 (548)
T ss_dssp             CCBEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEE
T ss_pred             CCCccCCCceEEEEeCCcCccCCCCC---CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEecc
Confidence            99999999999999977777777665   899999999999999999999999998899999999999999999999999


Q ss_pred             CCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccc
Q 005991          544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFR  614 (666)
Q Consensus       544 ~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~  614 (666)
                      +||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|+++      .++++++++++ |+     .|+
T Consensus       440 ~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~-l~-----~~~  512 (548)
T 2d1s_A          440 LKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ-VS-----NAK  512 (548)
T ss_dssp             GGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTT-SC-----GGG
T ss_pred             ccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHh-cc-----ccc
Confidence            9999997 8999999999999999999999999997654   5789999863      46899999988 88     999


Q ss_pred             cCc-chhHHH-HHHHHhhhhhhhhhccc
Q 005991          615 ANS-HVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       615 ~p~-~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +|+ .|.+++ +|++.+||++|++|++.
T Consensus       513 ~p~~~i~~v~~lP~t~~GKi~r~~L~~~  540 (548)
T 2d1s_A          513 RLRGGVRFVDEVPKGLTGKIDGRAIREI  540 (548)
T ss_dssp             SCTTCEEECSSCCBCTTSCBCHHHHHHH
T ss_pred             cccccEEEccCCCCCCcchhHHHHHHHH
Confidence            999 898885 88888899999999875

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=4.3e-78  Score=666.03  Aligned_cols=483  Identities=20%  Similarity=0.301  Sum_probs=331.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...|+.++|+++++++||++|+.+.   +      +++||+||+++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus         4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l   74 (509)
T 3ivr_A            4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG   74 (509)
T ss_dssp             TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3479999999999999999999753   2      469999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ||+++|+++||+++.++.+++.+++++++++++|++......+......++.++.++.+++...              .+
T Consensus        75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~  140 (509)
T 3ivr_A           75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--------------PF  140 (509)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS--------------SC
T ss_pred             HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc--------------Ch
Confidence            9999999999999999999999999999999999999888776666677777888877664211              12


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHH
Q 005991          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI  316 (666)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~  316 (666)
                      .++.........+.....++|+++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|.+++...+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~  220 (509)
T 3ivr_A          141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML  220 (509)
T ss_dssp             EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred             hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence            22222122222334456789999999999999999999999999999998888888999999999999999999998877


Q ss_pred             HHHHhCcEEEE-ecCCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCCh
Q 005991          317 VSVYYGVAVGF-YQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK  395 (666)
Q Consensus       317 ~~l~~G~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~  395 (666)
                      .++..|++.++ ..+++..+++.|+++++|++.++|+++..+++...     .                           
T Consensus       221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----~---------------------------  268 (509)
T 3ivr_A          221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA-----P---------------------------  268 (509)
T ss_dssp             HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC-----G---------------------------
T ss_pred             HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc-----c---------------------------
Confidence            65555555444 44899999999999999999999999999876310     0                           


Q ss_pred             hhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEE
Q 005991          396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEI  474 (666)
Q Consensus       396 ~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v  474 (666)
                                  ...+++|.++.||++   ++.+.+.+.+ ++++++.||+||++++++.....+ ...++|+|++++++
T Consensus       269 ------------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~  332 (509)
T 3ivr_A          269 ------------AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFWRTV  332 (509)
T ss_dssp             ------------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG-STTSCCEECTTCEE
T ss_pred             ------------cchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc-CCCcccccCCCcEE
Confidence                        000489999999987   7788888877 999999999999998766554332 34569999999999


Q ss_pred             EEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC--CCeEEcCC
Q 005991          475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK--KNIFKLAQ  552 (666)
Q Consensus       475 ~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~--~d~ikl~~  552 (666)
                      +|+| +++..++.|+   .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+  ||+||+ +
T Consensus       333 ~i~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~  406 (509)
T 3ivr_A          333 AVVD-AEDRPLPPGE---VGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT-G  406 (509)
T ss_dssp             EEEC-TTSCBCCTTC---CEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC----------
T ss_pred             EEEC-CCCCCCCCCC---ceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEE-C
Confidence            9999 5567776665   89999999999999999999999999 5999999999999999999999999  999996 8


Q ss_pred             eeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHHH
Q 005991          553 GEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA  623 (666)
Q Consensus       553 G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~  623 (666)
                      |++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.      .++++++++++ |+     .|++|+.|.+++
T Consensus       407 G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~-L~-----~~~~P~~i~~v~  480 (509)
T 3ivr_A          407 GENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASL-IA-----RYKKPKHVVFVE  480 (509)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhh-Cc-----ccCCCcEEEEec
Confidence            999999999999999999999999987654   5688888863      36788999988 88     999999999995


Q ss_pred             -HHHHHhhhhhhhhhccchh
Q 005991          624 -LIHNLCQLYSSKELFRSRC  642 (666)
Q Consensus       624 -~~~~~~gK~~r~~l~~~~~  642 (666)
                       +|++.+||++|++|++...
T Consensus       481 ~lP~t~~GKidr~~Lr~~~~  500 (509)
T 3ivr_A          481 ALPKDAKGAIDRAAVKTAHG  500 (509)
T ss_dssp             --------------------
T ss_pred             CCCCCCCCCccHHHHHHHHh
Confidence             8888889999999998743

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1.8e-77  Score=668.30  Aligned_cols=492  Identities=18%  Similarity=0.242  Sum_probs=420.4

Q ss_pred             CCCCHHHHHHHHHHh-----CCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHh
Q 005991           77 EIGTLHDNFIYAVEN-----YPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPE  150 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~-----~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e  150 (666)
                      ..+++.++|++++++     +||++|+.+.   ++. ++.+++||+||.++++++|++|.+. |+++||+|+|+++|+++
T Consensus        36 ~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e  111 (570)
T 3c5e_A           36 KFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE  111 (570)
T ss_dssp             BCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred             cccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence            456678999999999     9999999875   321 2347899999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCC
Q 005991          151 WLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSG  230 (666)
Q Consensus       151 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~  230 (666)
                      |++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+......++.++.++.++....        .+
T Consensus       112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  183 (570)
T 3c5e_A          112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC--------DG  183 (570)
T ss_dssp             HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC--------TT
T ss_pred             HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc--------cc
Confidence            9999999999999999999999999999999999999999999888877777677777777777654211        01


Q ss_pred             cEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHH--HHhhcccccccCCCcEEEEcCChHH
Q 005991          231 VKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS--NVAGFSLMVQFYPSDIYMSYLPLAH  308 (666)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~~~~d~~l~~~pl~h  308 (666)
                        ..+++++....... .+.....++|+++|+|||||||.||||++||+ ++.  ..... ..+++.++|++++++|++|
T Consensus       184 --~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~  258 (570)
T 3c5e_A          184 --WLNFKKLLNEASTT-HHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGW  258 (570)
T ss_dssp             --SEEHHHHHHHSCSC-CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred             --cccHHHHhhccccc-ccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence              24566666543321 22234578999999999999999999999999 444  44444 5678899999999999999


Q ss_pred             HHHHHH-HHHHHHhCcEEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005991          309 IYERAN-QIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (666)
Q Consensus       309 ~~~~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (666)
                      .+++.. ++.++..|+++++.+   +++..+++.|+++++|+++++|+++..|.+..   .                   
T Consensus       259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~-------------------  316 (570)
T 3c5e_A          259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---L-------------------  316 (570)
T ss_dssp             HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---T-------------------
T ss_pred             HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---c-------------------
Confidence            999875 778899999999885   69999999999999999999999999886520   0                   


Q ss_pred             HHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCC
Q 005991          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH  464 (666)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~  464 (666)
                             ..              ...+++|.+++||+++++++.+.|.+.+|+++++.||+||++..++.........++
T Consensus       317 -------~~--------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~  375 (570)
T 3c5e_A          317 -------SS--------------YKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGY  375 (570)
T ss_dssp             -------TT--------------CCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTC
T ss_pred             -------cc--------------cccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCc
Confidence                   00              001489999999999999999999998899999999999998766555444566789


Q ss_pred             ccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEe-----CCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEE
Q 005991          465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVR-----GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK  539 (666)
Q Consensus       465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~-----g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~  539 (666)
                      +|+|+++++++|+| ++++.++.|+   .|||+|+     |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+
T Consensus       376 vG~p~~~~~v~i~d-~~g~~~~~G~---~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~  450 (570)
T 3c5e_A          376 MGTAASCYDVQIID-DKGNVLPPGT---EGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQ  450 (570)
T ss_dssp             CCEECTTCCEEEEC-TTSCBCCTTC---CEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEE
T ss_pred             ccccCCCceEEEEC-CCCCCCCCCC---CCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEE
Confidence            99999999999999 5677777665   8999999     9999999999999999999 58999999999999999999


Q ss_pred             EEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh-----------hHHHHHHHHcCC
Q 005991          540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP-----------DVLKDWAASQGI  605 (666)
Q Consensus       540 i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-----------~~l~~~~~~~~l  605 (666)
                      |+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.+           ++++++++++ +
T Consensus       451 ~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~-L  528 (570)
T 3c5e_A          451 FMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSV-T  528 (570)
T ss_dssp             EEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHH-S
T ss_pred             EEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhh-C
Confidence            99999999997 8999999999999999999999999987653   57889998642           4678889888 8


Q ss_pred             CcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          606 KVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       606 ~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +     .|++|+.|.+++ +|++.+||++|++|++.
T Consensus       529 ~-----~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~  559 (570)
T 3c5e_A          529 A-----PYKYPRKIEFVLNLPKTVTGKIQRAKLRDK  559 (570)
T ss_dssp             C-----GGGSCSEEEEESCCCBCTTCCBCHHHHHHH
T ss_pred             c-----cccCCcEEEEeccCCCCCCcCCcHHHHHHH
Confidence            8     999999999995 88888899999999875

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=8e-78  Score=662.78  Aligned_cols=477  Identities=19%  Similarity=0.257  Sum_probs=397.0

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      ++|+.++|.++++++||++|+.+.   ++    .+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   73 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            468999999999999999999753   11    25799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEE--ccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC--IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (666)
                      |+++|+++||+++.++.+++.+++++++++++|+  +....+.+..   ..+.++ ++                     .
T Consensus        74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~---------------------~  128 (504)
T 1t5h_X           74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ---SGSGAR-II---------------------F  128 (504)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH---HCCCCE-EE---------------------E
T ss_pred             HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh---ccccce-eE---------------------E
Confidence            9999999999999999999999999999999999  6655444311   122222 22                     2


Q ss_pred             hHHHHhcCC----CCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccccccc--CCCcEEEEcCChHHH
Q 005991          236 YLQLQSQGC----SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF--YPSDIYMSYLPLAHI  309 (666)
Q Consensus       236 ~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~h~  309 (666)
                      ++++...+.    ....+.....++++++|+|||||||.||||++||+++.+.+......+++  .++|++++.+|++|.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~  208 (504)
T 1t5h_X          129 LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV  208 (504)
T ss_dssp             GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSH
T ss_pred             ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhc
Confidence            233222110    11111234578999999999999999999999999999888877766777  789999999999999


Q ss_pred             HHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 005991          310 YERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAI  387 (666)
Q Consensus       310 ~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~  387 (666)
                      +++.. ++.++..|+++++.+ +++..+++.|+++++|+++++|+++..|.+......                      
T Consensus       209 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------  266 (504)
T 1t5h_X          209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG----------------------  266 (504)
T ss_dssp             HHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------------
T ss_pred             chHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------------
Confidence            99854 778999999999987 799999999999999999999999998876310000                      


Q ss_pred             HcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccC
Q 005991          388 VSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGS  467 (666)
Q Consensus       388 ~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~  467 (666)
                          ..              ...+++|.+++||+++++++.+++++.+++.+++.||+||++. +.. .. ....+++|.
T Consensus       267 ----~~--------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~-~~-~~~~~~~g~  325 (504)
T 1t5h_X          267 ----SS--------------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLY-MR-QPKTGTEMA  325 (504)
T ss_dssp             ----CC--------------CCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEE-EE-SCSSSSEEB
T ss_pred             ----cc--------------ccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccc-cc-CCCCCcccc
Confidence                00              0014899999999999999999999999999999999999932 222 11 345688999


Q ss_pred             CccCcEEEEEecCCC--CCCCCCCCCCccEEEEe-CCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC
Q 005991          468 PNPACEIKLVDVPEM--NYTSEDQPHPRGEICVR-GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK  544 (666)
Q Consensus       468 p~~~~~v~ivd~~~~--~~~~~~~~~~~GEl~v~-g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~  544 (666)
                      |.++++++|+|.++.  +.++.|   +.|||+|+ |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+
T Consensus       326 p~~~~~~~i~~~~~~~~~~~~~g---~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~  401 (504)
T 1t5h_X          326 PGFFSEVRIVRIGGGVDEIVANG---EEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRV  401 (504)
T ss_dssp             CCTTCCEEEECTTSCTTCBCCTT---CCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEG
T ss_pred             CCCCCceeEEeccCCCCCcCCCC---CcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcc
Confidence            999999999994331  445544   48999999 9999999999999999999 7899999999999999999999999


Q ss_pred             CCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHH-cCCCcccccccc
Q 005991          545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAAS-QGIKVIYCFSFR  614 (666)
Q Consensus       545 ~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~-~~l~~~~~~~~~  614 (666)
                      ||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|+++      .+++++++++ + |+     .|+
T Consensus       402 dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~-L~-----~~~  474 (504)
T 1t5h_X          402 DDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSE-LA-----DFK  474 (504)
T ss_dssp             GGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSS-CC-----GGG
T ss_pred             cCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhcc-Cc-----ccc
Confidence            999997 8999999999999999999999999998764   5799999964      4689999998 6 88     999


Q ss_pred             cCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          615 ANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       615 ~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +|+.|.+++ +|++.+||++|++|++.
T Consensus       475 ~P~~i~~v~~lP~t~~GKi~r~~L~~~  501 (504)
T 1t5h_X          475 RPKRYFILDQLPKNALNKVLRRQLVQQ  501 (504)
T ss_dssp             SCSEEEECSCCCBCTTSCBCHHHHHHH
T ss_pred             cceEEEEhhhCCCCCCCCEeHHHHHHH
Confidence            999999995 88888899999999863

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=7.9e-78  Score=681.28  Aligned_cols=508  Identities=16%  Similarity=0.232  Sum_probs=420.9

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ...++++++|+++++++||++|+++.   +...++.+.+||+||+++++++|++|+++|+++||+|+|+++|++++++++
T Consensus        73 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~  149 (652)
T 1pg4_A           73 GTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM  149 (652)
T ss_dssp             CEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            34577899999999999999999875   322334678999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH---------HHHHHhhhcCC--CceEEEEeCCCCCCCCC
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL---------NTLLSFISEIP--SVHLIVVVGGKDEHLPS  224 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~l~~ii~~~~~~~~~~~  224 (666)
                      |||+++|++++|+++.++++++.+++++++++++|+++...         ..+.+.....+  .++.+++++....... 
T Consensus       150 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-  228 (652)
T 1pg4_A          150 LACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID-  228 (652)
T ss_dssp             HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC-
T ss_pred             HHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc-
Confidence            99999999999999999999999999999999999986532         33444443332  4566777654321110 


Q ss_pred             CCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHh-hcccccccCCCcEEEEc
Q 005991          225 LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSY  303 (666)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~  303 (666)
                      ..   .....+|+++...... ..+.....++|+++|+|||||||.||||++||++++..+. .....+++.++|+++++
T Consensus       229 ~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~  304 (652)
T 1pg4_A          229 WQ---EGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT  304 (652)
T ss_dssp             CC---BTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred             cc---CCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEc
Confidence            00   1123568887754332 1223345689999999999999999999999999876653 34455788999999999


Q ss_pred             CChHHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHH
Q 005991          304 LPLAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFT  377 (666)
Q Consensus       304 ~pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~  377 (666)
                      +|++|+++... ++.+|+.|+++++++     .++..+++.|+++++|+++++|+++..|.+......            
T Consensus       305 ~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------  372 (652)
T 1pg4_A          305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI------------  372 (652)
T ss_dssp             SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT------------
T ss_pred             cCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcccc------------
Confidence            99999999854 778999999999987     388999999999999999999999998865211000            


Q ss_pred             HHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC---CccccCcccchhhhhhhc
Q 005991          378 AAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISA  454 (666)
Q Consensus       378 ~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~  454 (666)
                                                  .....++||.+++||+++++++.+++.+.+|   +++++.||+||+++.++.
T Consensus       373 ----------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~  424 (652)
T 1pg4_A          373 ----------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT  424 (652)
T ss_dssp             ----------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBC
T ss_pred             ----------------------------ccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceec
Confidence                                        0001158999999999999999999998888   899999999999876665


Q ss_pred             cCCC--CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeC--CCcCccccCChhhhhhccC--CCCeeeccc
Q 005991          455 IDKG--DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVID--GDGWLHTGD  528 (666)
Q Consensus       455 ~~~~--~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~~--~~gw~~TGD  528 (666)
                      ..+.  ....+++|+|++|++++|+| ++++.++.+.   .|||+|+|  |++++|||++|+.+.+.|.  .+|||+|||
T Consensus       425 ~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~---~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGD  500 (652)
T 1pg4_A          425 PLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGD  500 (652)
T ss_dssp             CCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEE
T ss_pred             CCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCc---eEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCc
Confidence            4432  35678999999999999999 5666666554   89999999  7999999999999988762  489999999


Q ss_pred             EEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------hHH
Q 005991          529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------DVL  596 (666)
Q Consensus       529 lg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l  596 (666)
                      +|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|+|.+++   +.++|+|++++         +++
T Consensus       501 lg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l  579 (652)
T 1pg4_A          501 GARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEV  579 (652)
T ss_dssp             EEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHH
T ss_pred             EEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHH
Confidence            9999999999999999999998 8999999999999999999999999997643   57999999742         578


Q ss_pred             HHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccchh
Q 005991          597 KDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSRC  642 (666)
Q Consensus       597 ~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~~  642 (666)
                      +++++++ |+     .|++|+.|++++ +|++.+||++|++|++.-.
T Consensus       580 ~~~l~~~-l~-----~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~  620 (652)
T 1pg4_A          580 RNWVRKE-IG-----PLATPDVLHWTDSLPKTRSGKIMRRILRKIAA  620 (652)
T ss_dssp             HHHHHHH-TC-----GGGCCSEEEECSCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHHHh-CC-----CCcCCeEEEEcCCCCCCCCccchHHHHHHHHh
Confidence            8999998 88     999999999995 8888889999999998733

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=3.3e-78  Score=675.36  Aligned_cols=470  Identities=18%  Similarity=0.224  Sum_probs=319.2

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      +...+++++|+++++++||++|+.+.   +      +.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus        72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~  142 (570)
T 4gr5_A           72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL  142 (570)
T ss_dssp             CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            45679999999999999999999753   2      46999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (666)
                      |||+++|+++||+++.++.+++.+++++++++++|++.....       .++....++..+...                
T Consensus       143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~----------------  199 (570)
T 4gr5_A          143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSG-------RLTGTTTLYVEDEAA----------------  199 (570)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTT-------SSCSSEEEECCC-------------------
T ss_pred             HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhh-------cccCCcceeeecccc----------------
Confidence            999999999999999999999999999999999999875432       223333332211100                


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHH
Q 005991          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ  315 (666)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~  315 (666)
                            .............++|+++|+|||||||.||||++||+++.+.+.. ...+++.++|++++++|++|..+...+
T Consensus       200 ------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~  272 (570)
T 4gr5_A          200 ------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLEL  272 (570)
T ss_dssp             ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHH
T ss_pred             ------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHH
Confidence                  0001111223457899999999999999999999999999877665 445678899999999999998777778


Q ss_pred             HHHHHhCcEEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991          316 IVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (666)
Q Consensus       316 ~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (666)
                      +.+++.|+++++.+   .++..+++.|+++++|++.++|+++..|.+.....                            
T Consensus       273 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------------------------  324 (570)
T 4gr5_A          273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEA----------------------------  324 (570)
T ss_dssp             HHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGG----------------------------
T ss_pred             HHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhh----------------------------
Confidence            88999999999976   68999999999999999999999999887531100                            


Q ss_pred             CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCC----CCCCCCccC
Q 005991          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG----DNLSGHVGS  467 (666)
Q Consensus       393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~  467 (666)
                                       .+++|.+++||+++++++.+.+.+.+ +++++++||+||++++++.....    .....++|+
T Consensus       325 -----------------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~  387 (570)
T 4gr5_A          325 -----------------FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV  387 (570)
T ss_dssp             -----------------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBE
T ss_pred             -----------------CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccce
Confidence                             14899999999999999998888776 89999999999998766543321    234567999


Q ss_pred             CccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCC--------CCeeecccEEEEecCCcEE
Q 005991          468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG--------DGWLHTGDIGLWLPGGRLK  539 (666)
Q Consensus       468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~--------~gw~~TGDlg~~~~dG~l~  539 (666)
                      |+++++++|+| +++..++.|+   .|||||+|++++.|||++|+.|+++|..        +|||+|||+|++|+||+|+
T Consensus       388 p~~~~~v~i~d-~~~~~~~~G~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~  463 (570)
T 4gr5_A          388 PLAGKRAYVLD-DDLKPAANGA---LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLE  463 (570)
T ss_dssp             ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEE
T ss_pred             eeCCCEEEEEC-CCCCCCCCCC---cEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEE
Confidence            99999999999 6677777665   8999999999999999999999999843        3799999999999999999


Q ss_pred             EEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC-------hhHHHHHHHHcCCCccc
Q 005991          540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD-------PDVLKDWAASQGIKVIY  609 (666)
Q Consensus       540 i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-------~~~l~~~~~~~~l~~~~  609 (666)
                      |+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.       .++++++++++ |+   
T Consensus       464 ~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~-l~---  538 (570)
T 4gr5_A          464 YVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEA-LP---  538 (570)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhh-Cc---
Confidence            99999999997 8999999999999999999999999997643   5788998863       35788999988 88   


Q ss_pred             ccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          610 CFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       610 ~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                        .|++|+.+++++ +|++.+||++|++|++.
T Consensus       539 --~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          539 --AYMVPVECVPVDELPRTPNGKLDRRALTGS  568 (570)
T ss_dssp             --------------------------------
T ss_pred             --cccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence              999999999995 88888899999999874

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=2.2e-77  Score=666.59  Aligned_cols=470  Identities=19%  Similarity=0.276  Sum_probs=396.9

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      +...|+.++|.++++++||++|+.+.   +      +++||+||+++++++|++|.++|+++||+|+|+++|+++|++++
T Consensus        36 ~~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~  106 (563)
T 1amu_A           36 PRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI  106 (563)
T ss_dssp             CTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            34579999999999999999999753   2      46999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (666)
                      |||+++|+++||+++.++.+++.+++++++++++|++......+..    +.....+..++...                
T Consensus       107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~~~~~~~~~~~~~----------------  166 (563)
T 1amu_A          107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQFNGQVEIFEEDT----------------  166 (563)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SCCCSEEEECCCST----------------
T ss_pred             HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----ccccCceeeecchh----------------
Confidence            9999999999999999999999999999999999999876544322    11112233222110                


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHH
Q 005991          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ  315 (666)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~  315 (666)
                         +...  .......+..++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++..+
T Consensus       167 ---~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~  241 (563)
T 1amu_A          167 ---IKIR--EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM  241 (563)
T ss_dssp             ---TTTS--CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred             ---hccc--cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence               0000  00111234568999999999999999999999999999888877777889999999999999999999888


Q ss_pred             HHHHHhCcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCC
Q 005991          316 IVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ  391 (666)
Q Consensus       316 ~~~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~  391 (666)
                      +.+++.|+++++.+    .++..+++.++++++|++.++|+++..+...                               
T Consensus       242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------------------------------  290 (563)
T 1amu_A          242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE-------------------------------  290 (563)
T ss_dssp             HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------------
T ss_pred             HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------------
Confidence            88999999999886    5899999999999999999999998765320                               


Q ss_pred             CCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC---CCCCCccCC
Q 005991          392 TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD---NLSGHVGSP  468 (666)
Q Consensus       392 ~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p  468 (666)
                                       ...++|.+++||+++++++.+.|.+  .++++++||+||++.+++......   ....++|+|
T Consensus       291 -----------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p  351 (563)
T 1amu_A          291 -----------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAP  351 (563)
T ss_dssp             -----------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEE
T ss_pred             -----------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCCcccce
Confidence                             0148999999999999999999876  478999999999987665543322   345789999


Q ss_pred             ccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC------CCCeeecccEEEEecCCcEEEEc
Q 005991          469 NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID------GDGWLHTGDIGLWLPGGRLKIID  542 (666)
Q Consensus       469 ~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~l~i~G  542 (666)
                      +++++++|+| ++++.++.|+   .|||||+|++++.|||++|+.|+++|.      ++|||+|||+|++|+||+|+|+|
T Consensus       352 ~~~~~v~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~G  427 (563)
T 1amu_A          352 IQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG  427 (563)
T ss_dssp             CTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEE
T ss_pred             eCCCEEEEEC-CCcCCCCCCC---cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEec
Confidence            9999999999 6667776665   899999999999999999999999984      34699999999999999999999


Q ss_pred             cCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc----ChhHHHHHHHHcCCCccccccccc
Q 005991          543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV----DPDVLKDWAASQGIKVIYCFSFRA  615 (666)
Q Consensus       543 R~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~l~~~~~~~~l~~~~~~~~~~  615 (666)
                      |+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.   +.++|+|++    +.++++++++++ |+     .|++
T Consensus       428 R~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~-L~-----~y~~  500 (563)
T 1amu_A          428 RIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEE-LP-----TYMI  500 (563)
T ss_dssp             EGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHH-SC-----GGGS
T ss_pred             cccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCCCHHHHHHHHHhh-Cc-----hhhC
Confidence            99999997 8999999999999999999999999987653   578999986    357899999998 98     9999


Q ss_pred             CcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          616 NSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       616 p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      |+.|++++ +|++.+||++|++|++.
T Consensus       501 P~~i~~v~~lP~t~~GKi~r~~L~~~  526 (563)
T 1amu_A          501 PSYFIQLDKMPLTSNGKIDRKQLPEP  526 (563)
T ss_dssp             CSEEEECSSCCBCTTSSBCGGGSCCC
T ss_pred             CcEEEEecccCCCCCcChhHHhcCCc
Confidence            99999995 88888899999999876

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=1.2e-77  Score=674.19  Aligned_cols=468  Identities=18%  Similarity=0.148  Sum_probs=391.2

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ....|+.++|+++++++||++|+.+.   +      +.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus        24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~   94 (620)
T 4dg8_A           24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL   94 (620)
T ss_dssp             GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            35679999999999999999999764   2      45999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS  235 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (666)
                      |||+++|+++|||++.++.+++.++++++++++++++......       ...+..                      ..
T Consensus        95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~-------~~~~~~----------------------~~  145 (620)
T 4dg8_A           95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTP-------ANGLPC----------------------VP  145 (620)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCC-------CTTSCE----------------------EE
T ss_pred             HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccc-------ccCCce----------------------ee
Confidence            9999999999999999999999999999999999976532110       001111                      11


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHH
Q 005991          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ  315 (666)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~  315 (666)
                      .......  ..........++++++|+|||||||.||||+++|+++.+.+.. ...+++.++|++++++|++|++++..+
T Consensus       146 ~~~~~~~--~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~  222 (620)
T 4dg8_A          146 VRHLPAA--PASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEI  222 (620)
T ss_dssp             GGGCCCC--CCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHH
T ss_pred             eccCCcC--CccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHH
Confidence            1111000  1111222356899999999999999999999999999887765 455788999999999999999999999


Q ss_pred             HHHHHhCcEEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991          316 IVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (666)
Q Consensus       316 ~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (666)
                      +.+++.|+++++.+   .++..+++.|+++++|++.++|+++..+.+....                             
T Consensus       223 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-----------------------------  273 (620)
T 4dg8_A          223 WGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPD-----------------------------  273 (620)
T ss_dssp             HHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGG-----------------------------
T ss_pred             HHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChh-----------------------------
Confidence            99999999999865   6999999999999999999999999988652000                             


Q ss_pred             CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCC----CCCCCCccC
Q 005991          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG----DNLSGHVGS  467 (666)
Q Consensus       393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~  467 (666)
                                      ..+++|.+++||++++++..+.+...+ +++++|.||+||++.+++.....    .....++|+
T Consensus       274 ----------------~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~  337 (620)
T 4dg8_A          274 ----------------CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGK  337 (620)
T ss_dssp             ----------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBE
T ss_pred             ----------------hCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCcee
Confidence                            014899999999999998888776655 89999999999998876644322    245678999


Q ss_pred             CccCcEEEEEecCCCCC-CCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCC-------CeeecccEEEEecCCcEE
Q 005991          468 PNPACEIKLVDVPEMNY-TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGD-------GWLHTGDIGLWLPGGRLK  539 (666)
Q Consensus       468 p~~~~~v~ivd~~~~~~-~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~-------gw~~TGDlg~~~~dG~l~  539 (666)
                      |++|++++|+|. ++.. ++.|.   .|||||+|+++++|||++|+.|+++|..+       +||+|||+|++++||+|+
T Consensus       338 p~~~~~~~i~d~-~~~~~~~~g~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~  413 (620)
T 4dg8_A          338 AIAGTAVLLLDE-HGQEIAEPDR---AGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLR  413 (620)
T ss_dssp             ECTTEEEEEECT-TSCBCCSSSC---CEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEE
T ss_pred             cccCcEEEEECc-cCCCCCCCCC---ceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEE
Confidence            999999999994 4443 55554   89999999999999999999999999543       799999999999999999


Q ss_pred             EEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC--CeEEEEEEcChhHHHHHHHHcCCCcccccccccCc
Q 005991          540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN--SCLVAIVAVDPDVLKDWAASQGIKVIYCFSFRANS  617 (666)
Q Consensus       540 i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~~~~l~~~~~~~~l~~~~~~~~~~p~  617 (666)
                      |+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.++.  ..++++++.+.+.++++++++ |+     .|++|+
T Consensus       414 ~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~~~~~l~~~-Lp-----~y~~P~  486 (620)
T 4dg8_A          414 FIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLRQ-LP-----TWQRPH  486 (620)
T ss_dssp             EEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCHHHHHH-SC-----GGGSCS
T ss_pred             EEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHHHHHHHHHh-Ch-----hhcCCc
Confidence            99999999998 8999999999999999999999999986644  466777777777888888888 88     999999


Q ss_pred             chhHHH-HHHHHhhhhhhhhhccc
Q 005991          618 HVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       618 ~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      .+++++ +|++.+||++|++|++.
T Consensus       487 ~~~~v~~lP~t~~GKidR~~L~~~  510 (620)
T 4dg8_A          487 ACVRVEALPLTAHGKLDRAALLRR  510 (620)
T ss_dssp             EEEECSSCCCC----CCHHHHHHH
T ss_pred             EEEEECcCCCCcccCHhHHHHhhc
Confidence            999995 88999999999999764

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=4.3e-77  Score=661.25  Aligned_cols=490  Identities=21%  Similarity=0.295  Sum_probs=402.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      .++++.++|.++++ +||++|+++.   +      +.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus        22 ~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l   91 (529)
T 2v7b_A           22 LFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL   91 (529)
T ss_dssp             CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred             ceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence            34568999999999 9999999743   1      459999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCc-eEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV-HLIVVVGGKDEHLPSLPSTSGVKLIS  235 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~  235 (666)
                      ||+++|+++||+++.++.+++.+++++++++++|++......+.......+.+ ..++.++.....        +.....
T Consensus        92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  163 (529)
T 2v7b_A           92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE--------PRLAPL  163 (529)
T ss_dssp             HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC--------------CCCB
T ss_pred             HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc--------cccccc
Confidence            99999999999999999999999999999999999988777766655544544 455554432110        001124


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHH-HHHHhhcccccccCCCcEEEEcCChHHHHHHHH
Q 005991          236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNL-ISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN  314 (666)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (666)
                      ++++...... ..+.....++|+++|+|||||||.||||++||+++ .+........+++.++|++++++|++|.+++..
T Consensus       164 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~  242 (529)
T 2v7b_A          164 FEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN  242 (529)
T ss_dssp             HHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHH
T ss_pred             hhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHH
Confidence            6666553222 12233467899999999999999999999999999 666666666678899999999999999999876


Q ss_pred             -HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCC
Q 005991          315 -QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ  391 (666)
Q Consensus       315 -~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~  391 (666)
                       .+.++..|+++++.+  +++..+++.++++++|++.++|+++..++....                             
T Consensus       243 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------------  293 (529)
T 2v7b_A          243 GLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-----------------------------  293 (529)
T ss_dssp             HTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----------------------------
T ss_pred             HHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----------------------------
Confidence             567899999999873  799999999999999999999999988764200                             


Q ss_pred             CCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccC
Q 005991          392 TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPA  471 (666)
Q Consensus       392 ~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~  471 (666)
                      .+ ...+            .++|.+++||+++++++.+++++.+|++++++||+||++.+++.........+++|+|+++
T Consensus       294 ~~-~~~~------------~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~  360 (529)
T 2v7b_A          294 LP-ARAD------------VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPG  360 (529)
T ss_dssp             CC-CGGG------------CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTT
T ss_pred             cc-cccC------------CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCC
Confidence            00 0000            3799999999999999999999989999999999999976655554445677899999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcC
Q 005991          472 CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA  551 (666)
Q Consensus       472 ~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~  551 (666)
                      ++++|+| ++++.++.|+   .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++++||+|+|+||+||+||+ 
T Consensus       361 ~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-  434 (529)
T 2v7b_A          361 YEIELRD-EAGHAVPDGE---VGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKV-  434 (529)
T ss_dssp             CEEEEEC-TTSCBCCTTS---CEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC--
T ss_pred             CEEEEEC-CCCCCCCCCC---ccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEE-
Confidence            9999999 6677777665   89999999999999999999999999 5899999999999999999999999999997 


Q ss_pred             CeeeeccHHHHHHHhcCcCcceEEEEEeCC--CCeEEEEEEcCh---------hHHHHHHHHcCCCcccccccccCcchh
Q 005991          552 QGEYVAPEKIENVYAKCKFVLQCFIYGDSF--NSCLVAIVAVDP---------DVLKDWAASQGIKVIYCFSFRANSHVI  620 (666)
Q Consensus       552 ~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~---------~~l~~~~~~~~l~~~~~~~~~~p~~i~  620 (666)
                      +|++|+|.|||++|.+||+|.+|+|++...  .+.++|+|++.+         ++++++++++ |+     .|++|+.+.
T Consensus       435 ~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~-L~-----~~~~P~~i~  508 (529)
T 2v7b_A          435 SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDR-LA-----PHKYPRDIV  508 (529)
T ss_dssp             ---CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTT-SC-----TTTSCSEEE
T ss_pred             CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhh-cc-----hhhCCeEEE
Confidence            899999999999999999999999998732  257889998632         4688899987 88     999999999


Q ss_pred             HHH-HHHHHhhhhhhhhhcc
Q 005991          621 FIA-LIHNLCQLYSSKELFR  639 (666)
Q Consensus       621 ~v~-~~~~~~gK~~r~~l~~  639 (666)
                      +++ +|++.+||++|++|++
T Consensus       509 ~v~~lP~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          509 FVDDLPKTATGKIQRFKLRE  528 (529)
T ss_dssp             EESCCCBCTTSCBCHHHHHC
T ss_pred             EeccCCCCCccchhHHhHhh
Confidence            995 8888889999999986

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=5.9e-77  Score=674.33  Aligned_cols=510  Identities=16%  Similarity=0.203  Sum_probs=421.7

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCCHhHHH
Q 005991           75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL-FHGLQKGVRIGLYLINRPEWLI  153 (666)
Q Consensus        75 ~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~e~~~  153 (666)
                      ....++++++|+++++++||++|+++.   +...++.+++||+||.++++++|++|+ ++|+++||+|+|+++|++|+++
T Consensus        78 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~  154 (663)
T 1ry2_A           78 NGQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAII  154 (663)
T ss_dssp             TCEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHH
T ss_pred             CCCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHH
Confidence            345678999999999999999999875   322344678999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH---------HHHHHhhhcCCCceEEEEeCCCCCCCCC
Q 005991          154 VDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL---------NTLLSFISEIPSVHLIVVVGGKDEHLPS  224 (666)
Q Consensus       154 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~l~~ii~~~~~~~~~~~  224 (666)
                      ++|||+++|++++|+++.++.+++.++|++++++++|+++...         ..+.+....++.++.+++++........
T Consensus       155 a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~  234 (663)
T 1ry2_A          155 TLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA  234 (663)
T ss_dssp             HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC
T ss_pred             HHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc
Confidence            9999999999999999999999999999999999999987542         3444555566777777777643210000


Q ss_pred             CCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHh-hcccccccCCCcEEEEc
Q 005991          225 LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSY  303 (666)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~  303 (666)
                      .   ......+|.++...... ..+..+.+++|+++|+|||||||.||||++||++++..+. .....+++.++|+++++
T Consensus       235 ~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~  310 (663)
T 1ry2_A          235 F---HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA  310 (663)
T ss_dssp             C---CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEEC
T ss_pred             c---CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEc
Confidence            0   01123578777654322 1233445789999999999999999999999999876654 34445788999999999


Q ss_pred             CChHHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHH
Q 005991          304 LPLAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFT  377 (666)
Q Consensus       304 ~pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~  377 (666)
                      +|++|+++... ++.+|+.|+++++++     .++..+++.|+++++|+++++|+++..|.+....              
T Consensus       311 ~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--------------  376 (663)
T 1ry2_A          311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS--------------  376 (663)
T ss_dssp             SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT--------------
T ss_pred             CCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc--------------
Confidence            99999999854 778999999999986     3789999999999999999999999887542100              


Q ss_pred             HHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC---CccccCcccchhhhhhhc
Q 005991          378 AAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISA  454 (666)
Q Consensus       378 ~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~  454 (666)
                                     ..   +        ....++||.+++||+++++++.+++.+.+|   +++++.||+||+++.++.
T Consensus       377 ---------------~~---~--------~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~  430 (663)
T 1ry2_A          377 ---------------YI---E--------NHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT  430 (663)
T ss_dssp             ---------------SS---S--------SCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEE
T ss_pred             ---------------cc---c--------cCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeec
Confidence                           00   0        000158999999999999999999999888   899999999999876655


Q ss_pred             cCC---CCCCCCCccCCccCcEEEEEecCCCCCCCC-CCCCCccEEEEeC--CCcCccccCChhhhhhccC--CCCeeec
Q 005991          455 IDK---GDNLSGHVGSPNPACEIKLVDVPEMNYTSE-DQPHPRGEICVRG--PIVFQGYYKNEVQTREVID--GDGWLHT  526 (666)
Q Consensus       455 ~~~---~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~-~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~~--~~gw~~T  526 (666)
                      ..+   .....+++|+|++|++++|+|.++++.++. +   +.|||+|+|  |+++.|||++|+.|.+.|.  .+|||+|
T Consensus       431 ~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g---~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~T  507 (663)
T 1ry2_A          431 PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH---AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFT  507 (663)
T ss_dssp             CCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSS---CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred             cCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCC---cceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEc
Confidence            433   235678999999999999999546666655 4   389999999  5899999999999998873  3899999


Q ss_pred             ccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh----------
Q 005991          527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP----------  593 (666)
Q Consensus       527 GDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------  593 (666)
                      ||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++   +.++|+|++++          
T Consensus       508 GDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~  586 (663)
T 1ry2_A          508 GDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDD  586 (663)
T ss_dssp             EEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-----------
T ss_pred             CCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccch
Confidence            999999999999999999999997 8999999999999999999999999997653   57999998632          


Q ss_pred             ------hHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccch
Q 005991          594 ------DVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSR  641 (666)
Q Consensus       594 ------~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~  641 (666)
                            ++++++++++ |+     .|++|+.|++++ +|++.+||++|++|++.-
T Consensus       587 ~~~~l~~~l~~~l~~~-L~-----~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~  635 (663)
T 1ry2_A          587 ELQDIKKHLVFTVRKD-IG-----PFAAPKLIILVDDLPKTRSGKIMRRILRKIL  635 (663)
T ss_dssp             -CCSHHHHHHHHHHHH-TC-----TTTSCSEEEECSCCCBCTTSCBCHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHh-CC-----CCcCCeEEEEcCCCCCCCccCchHHHHHHHH
Confidence                  4577888888 88     999999999995 888889999999999863

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=2.8e-76  Score=665.62  Aligned_cols=489  Identities=20%  Similarity=0.254  Sum_probs=415.5

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...|+.++|+++++  ||++|+.+.   +      +.+||+||+++++++|++|++.|+++||+|+++++|+++|++++|
T Consensus        25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l   93 (617)
T 3rg2_A           25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF   93 (617)
T ss_dssp             CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence            45789999999987  999999753   2      469999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH-----HHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCc
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV  231 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~  231 (666)
                      ||+++|+++||+++.++.+++.++++++++++++++....     ..+.......+.++.+...+....           
T Consensus        94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  162 (617)
T 3rg2_A           94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE-----------  162 (617)
T ss_dssp             HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred             HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence            9999999999999999999999999999999999987653     333344445566666666544211           


Q ss_pred             EEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHH
Q 005991          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYE  311 (666)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~  311 (666)
                        ..+.+....... .....+..++++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.++
T Consensus       163 --~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~  239 (617)
T 3rg2_A          163 --HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA  239 (617)
T ss_dssp             --TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred             --cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence              123444433222 12234457899999999999999999999999999999988888889999999999999999999


Q ss_pred             HHH--HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005991          312 RAN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV  388 (666)
Q Consensus       312 ~~~--~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~  388 (666)
                      +..  .+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.+.......                      
T Consensus       240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------  297 (617)
T 3rg2_A          240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES----------------------  297 (617)
T ss_dssp             HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC----------------------
T ss_pred             hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc----------------------
Confidence            875  788999999999987 7999999999999999999999999988764321100                      


Q ss_pred             cCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC-CCCCCccC
Q 005991          389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGS  467 (666)
Q Consensus       389 ~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~  467 (666)
                          +.              ..+++|.+++||+++++++.+++.+.++++++|.||+||++..++...... ....++|+
T Consensus       298 ----~~--------------~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  359 (617)
T 3rg2_A          298 ----RA--------------QLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGY  359 (617)
T ss_dssp             ----TT--------------TTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCE
T ss_pred             ----cc--------------cCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCc
Confidence                00              014899999999999999999999989999999999999986544322211 23457899


Q ss_pred             Cc-cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCC
Q 005991          468 PN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN  546 (666)
Q Consensus       468 p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d  546 (666)
                      |+ ++++++|+| ++++.++.|.   .|||||+|+++++|||++|+.|+++|..+|||+|||+|++++||+|+|+||+||
T Consensus       360 p~~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd  435 (617)
T 3rg2_A          360 PMCPDDEVWVAD-AEGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKD  435 (617)
T ss_dssp             ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSS
T ss_pred             cCCCCceEEEEC-CCCCCCCCCC---ceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCC
Confidence            97 788999999 6777777775   899999999999999999999999999999999999999999999999999999


Q ss_pred             eEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC----hhHHHHHHHHcCCCcccccccccCcch
Q 005991          547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD----PDVLKDWAASQGIKVIYCFSFRANSHV  619 (666)
Q Consensus       547 ~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~----~~~l~~~~~~~~l~~~~~~~~~~p~~i  619 (666)
                      +||+ +|+||+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.    .++++++++++.++     .|++|..+
T Consensus       436 ~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~~lp-----~~~vP~~~  509 (617)
T 3rg2_A          436 QINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIA-----EFKLPDRV  509 (617)
T ss_dssp             EEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTTTCC-----GGGSCSEE
T ss_pred             EEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhCCCc-----cccCCcEE
Confidence            9997 8999999999999999999999999986543   5788998863    57899999985488     99999999


Q ss_pred             hHHH-HHHHHhhhhhhhhhccc
Q 005991          620 IFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       620 ~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++++ +|++.+||++|++|++.
T Consensus       510 ~~v~~lP~t~~GKidR~~L~~~  531 (617)
T 3rg2_A          510 ECVDSLPLTAVGKVDKKQLRQW  531 (617)
T ss_dssp             EECSCCCBCTTSSBCHHHHHHH
T ss_pred             EEecccCCCCCCCCcHHHHHHH
Confidence            9995 88999999999999876

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=2.8e-76  Score=651.65  Aligned_cols=472  Identities=18%  Similarity=0.195  Sum_probs=404.0

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      .|+.++|+++++++||++|+.+.         .+++||+||+++++++|++|.+. |.++|++|+++++|+++|++++||
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~---------~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA   71 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ---------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG   71 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC---------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence            37899999999999999999753         25699999999999999999885 888999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehH
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (666)
                      |+++|++++|+++.++.+++.+++++++++++|++......      ..                     .......+++
T Consensus        72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~---------------------~~~~~~~~~~  124 (511)
T 3e7w_A           72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AV---------------------GQQIQTVSAE  124 (511)
T ss_dssp             HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CC---------------------CCSSCEEEHH
T ss_pred             HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hc---------------------ccccceecHh
Confidence            99999999999999999999999999999999996542100      00                     0112345666


Q ss_pred             HHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHH
Q 005991          238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIV  317 (666)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~  317 (666)
                      ++...............++++++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|.+++...+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~  204 (511)
T 3e7w_A          125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP  204 (511)
T ss_dssp             HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred             hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence            66654433323333457899999999999999999999999999999988888889999999999999999999988889


Q ss_pred             HHHhCcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005991          318 SVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP  393 (666)
Q Consensus       318 ~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~  393 (666)
                      ++..|+++++.+    .++..+++.++++++|++.++|+++..++.....                              
T Consensus       205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------  254 (511)
T 3e7w_A          205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF------------------------------  254 (511)
T ss_dssp             HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC------------------------------
T ss_pred             HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc------------------------------
Confidence            999999999987    4899999999999999999999999887642000                              


Q ss_pred             ChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCC-----CCCCCCccC
Q 005991          394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG-----DNLSGHVGS  467 (666)
Q Consensus       394 ~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~  467 (666)
                                  .....+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++.....     .....++|+
T Consensus       255 ------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~  322 (511)
T 3e7w_A          255 ------------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF  322 (511)
T ss_dssp             ------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred             ------------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence                        000114899999999999999999999988 89999999999998776644322     234567999


Q ss_pred             CccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC---CCCeeecccEEEEecCCcEEEEccC
Q 005991          468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID---GDGWLHTGDIGLWLPGGRLKIIDRK  544 (666)
Q Consensus       468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~---~~gw~~TGDlg~~~~dG~l~i~GR~  544 (666)
                      |+++++++|+| +++..++.|+   .|||+|+|++++.|||++|+.|++.|.   +++||+|||+|++ +||+|+|+||+
T Consensus       323 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~  397 (511)
T 3e7w_A          323 AKPDMNIFIMD-EEGQPLPEGE---KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRL  397 (511)
T ss_dssp             ECTTCEEEEEC-TTSCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEES
T ss_pred             eeCCCEEEEEC-CCCCCCCCCC---ceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccc
Confidence            99999999999 5677777665   899999999999999999999999982   2237999999999 59999999999


Q ss_pred             CCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh----------hHHHHHHHHcCCCccccc
Q 005991          545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP----------DVLKDWAASQGIKVIYCF  611 (666)
Q Consensus       545 ~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~l~~~~~~~~l~~~~~~  611 (666)
                      ||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++++          ++++++++++ |+     
T Consensus       398 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~-L~-----  470 (511)
T 3e7w_A          398 DFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAAS-LP-----  470 (511)
T ss_dssp             SSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHH-SC-----
T ss_pred             cCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhh-Cc-----
Confidence            999998 8999999999999999999999999987643   58999999753          4688999998 88     


Q ss_pred             ccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          612 SFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       612 ~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      .|++|+.+.+++ +|++.+||++|++|++.
T Consensus       471 ~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~  500 (511)
T 3e7w_A          471 AYMIPRKFIYQDHIQMTANGKIDRKRIGEE  500 (511)
T ss_dssp             GGGSCSEEEECSCCCBCTTSCBCHHHHHHH
T ss_pred             hhhCCeeEEEeccCCCCCCcCccHHHHHhH
Confidence            999999999995 88888899999999886

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=8.5e-77  Score=656.15  Aligned_cols=470  Identities=19%  Similarity=0.235  Sum_probs=397.7

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .|+.++|+++++++||++|+.+.   +      +++||+||+++++++|++|.++|+++||+|+++++|+++|++++|||
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~   71 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC   71 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            37899999999999999999764   2      45999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe---
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS---  235 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~---  235 (666)
                      +++|+++||+++.++.+++.+++++++++++|++.....         ..+.                    .....   
T Consensus        72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~---------~~~~--------------------~~~~~~~~  122 (512)
T 3fce_A           72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV---------TDLP--------------------VRIVSEDN  122 (512)
T ss_dssp             HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS---------SCCS--------------------SEEEETHH
T ss_pred             HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc---------cccc--------------------cceechhh
Confidence            999999999999999999999999999999999753210         0000                    11112   


Q ss_pred             hHHHHhc-CCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH
Q 005991          236 YLQLQSQ-GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN  314 (666)
Q Consensus       236 ~~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (666)
                      +.++... ......+.....++++++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|.+++..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~  202 (512)
T 3fce_A          123 LKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD  202 (512)
T ss_dssp             HHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHH
T ss_pred             hhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHH
Confidence            1222211 111122333467899999999999999999999999999999988888889999999999999999999988


Q ss_pred             HHHHHHhCcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005991          315 QIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (666)
Q Consensus       315 ~~~~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (666)
                      ++.+++.|+++++.+    .++..+++.++++++|++.++|+++..++.....                           
T Consensus       203 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------  255 (512)
T 3fce_A          203 IYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASF---------------------------  255 (512)
T ss_dssp             HHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC---------------------------
T ss_pred             HHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccc---------------------------
Confidence            889999999999987    4899999999999999999999999877542000                           


Q ss_pred             CCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCC-----CCCCC
Q 005991          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD-----NLSGH  464 (666)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~  464 (666)
                                     .....+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......     ....+
T Consensus       256 ---------------~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~  320 (512)
T 3fce_A          256 ---------------SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLP  320 (512)
T ss_dssp             ---------------STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCC
T ss_pred             ---------------cchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCc
Confidence                           000114899999999999999999999988 899999999999987766443322     35678


Q ss_pred             ccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhcc---CCCCeeecccEEEEecCCcEEEE
Q 005991          465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIGLWLPGGRLKII  541 (666)
Q Consensus       465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i~  541 (666)
                      +|+|.++++++|+| +++..++.++   .|||+|+||+++.|||++|+.|++.|   +++|||+|||+|++ +||+|+|+
T Consensus       321 ~G~~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~  395 (512)
T 3fce_A          321 VGYCKSDCRLLIMK-EDGTIAPDGE---KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYN  395 (512)
T ss_dssp             CEEECTTCEEEEEC-SSSCBCCTTS---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEE
T ss_pred             cccccCCcEEEEEC-CCCCCCCCCC---eEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEe
Confidence            99999999999999 6677776665   89999999999999999999999998   46789999999999 79999999


Q ss_pred             ccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh----------hHHHHHHHHcCCCcc
Q 005991          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP----------DVLKDWAASQGIKVI  608 (666)
Q Consensus       542 GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~l~~~~~~~~l~~~  608 (666)
                      ||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.   +.++|+|++++          ++++++++++ |+  
T Consensus       396 GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~-L~--  471 (512)
T 3fce_A          396 GRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNER-LP--  471 (512)
T ss_dssp             EEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTT-SC--
T ss_pred             cccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhh-Cc--
Confidence            999999998 8999999999999999999999999986544   57899999753          3688999988 88  


Q ss_pred             cccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          609 YCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       609 ~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                         .|++|+.+.+++ +|++.+||++|++|++.
T Consensus       472 ---~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~  501 (512)
T 3fce_A          472 ---NYMIPRKFMYQSSIPMTPNGKVDRKKLLSE  501 (512)
T ss_dssp             ---GGGSCSEEEECSCCCBCTTSSBCHHHHHHH
T ss_pred             ---hhcCCeEEEEecccCCCCCcChHHHHHHhh
Confidence               999999999995 88888899999999877

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=2.1e-76  Score=700.64  Aligned_cols=499  Identities=25%  Similarity=0.356  Sum_probs=342.5

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991           75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (666)
Q Consensus        75 ~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  154 (666)
                      .|...|++++|.++++++||++|+++.   +.    .+++||+||+++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus        57 ~p~~~tl~~~l~~~a~~~pd~~Al~~~---~~----~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~  129 (979)
T 3tsy_A           57 IPNHLSLHDYIFQNISEFATKPCLING---PT----GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLS  129 (979)
T ss_dssp             CCTTSCHHHHHTTTGGGTTTSEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHhCCCCeEEEEC---CC----CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHH
Confidence            345689999999999999999999763   21    25699999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEE
Q 005991          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (666)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~  234 (666)
                      +|||+++|+++||+++.++++++.+++++++++++|++....+.+....... .+ .++.++..... .     ......
T Consensus       130 ~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~-~-----~~~~~~  201 (979)
T 3tsy_A          130 FLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNESV-P-----IPEGCL  201 (979)
T ss_dssp             HHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCTTS-C-----CCTTEE
T ss_pred             HHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCcccc-c-----CCcccc
Confidence            9999999999999999999999999999999999999987766555544332 22 34444432110 0     011235


Q ss_pred             ehHHHHhcCCCC--CCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc----ccccCCCcEEEEcCChHH
Q 005991          235 SYLQLQSQGCSS--PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL----MVQFYPSDIYMSYLPLAH  308 (666)
Q Consensus       235 ~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h  308 (666)
                      +|.++.......  ..+.....++|+++|+|||||||.||||++||+++++.+.....    .+++.++|++++++|++|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h  281 (979)
T 3tsy_A          202 RFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFH  281 (979)
T ss_dssp             EGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSS
T ss_pred             cHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHH
Confidence            666655433221  12334567899999999999999999999999999988765433    356789999999999999


Q ss_pred             HHHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005991          309 IYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA  386 (666)
Q Consensus       309 ~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~  386 (666)
                      .+++.. ++.++..|+++++.+ +++..+++.|+++++|++.++|+++..|.+.....                      
T Consensus       282 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------  339 (979)
T 3tsy_A          282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE----------------------  339 (979)
T ss_dssp             HHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG----------------------
T ss_pred             HHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcccc----------------------
Confidence            999966 677899999999987 79999999999999999999999998886521100                      


Q ss_pred             HHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccC-----CCCC
Q 005991          387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAID-----KGDN  460 (666)
Q Consensus       387 ~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~-----~~~~  460 (666)
                                          ....+++|.+++||+++++++.+++.+.+ +++++|.||+||++.+++...     +...
T Consensus       340 --------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~  399 (979)
T 3tsy_A          340 --------------------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPV  399 (979)
T ss_dssp             --------------------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCC
T ss_pred             --------------------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCcccc
Confidence                                00014899999999999999999999888 899999999999987654431     2234


Q ss_pred             CCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEE
Q 005991          461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI  540 (666)
Q Consensus       461 ~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i  540 (666)
                      ..+++|+|+++++++|+|+++++.++.++   .|||||+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|
T Consensus       400 ~~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~  476 (979)
T 3tsy_A          400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQ---PGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFI  476 (979)
T ss_dssp             CTTCCCEECSSCEEEEECTTSCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred             CCCCcCcccCCcEEEEEeCCCCCCCCCCC---ccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEE
Confidence            67899999999999999977777777765   899999999999999999999999999999999999999999999999


Q ss_pred             EccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCccccc
Q 005991          541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCF  611 (666)
Q Consensus       541 ~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~  611 (666)
                      +||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.      +++++++++++ |+     
T Consensus       477 ~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~-l~-----  549 (979)
T 3tsy_A          477 VDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQ-VV-----  549 (979)
T ss_dssp             EEESCC--------------------------------------------------------------------------
T ss_pred             ecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHh-cc-----
Confidence            9999999998 8999999999999999999999999987653   5789999863      46789999988 88     


Q ss_pred             ccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          612 SFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       612 ~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      .|++|+.+++++ +|++.+||++|++|++.
T Consensus       550 ~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~  579 (979)
T 3tsy_A          550 FYKRINKVFFTESIPKAPSGKILRKDLRAK  579 (979)
T ss_dssp             ------------------------------
T ss_pred             cccCCeEEEEeCCcCcCCCCCeeHHHHHHH
Confidence            999999999995 88888899999999876

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=6.4e-77  Score=654.78  Aligned_cols=471  Identities=23%  Similarity=0.306  Sum_probs=378.6

Q ss_pred             CCCCCHHHHHHHHHHhCCC-CceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPD-YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  154 (666)
                      .++.|+.++|.++++++|+ ++|+.+.   +      +.+||+||.++++++|++|.     .|++|+++++|+++|+++
T Consensus        19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~   84 (505)
T 3nyq_A           19 SHMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA   84 (505)
T ss_dssp             -----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred             cccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence            3567888999999999987 9999753   2      46999999999999998874     388999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEE
Q 005991          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (666)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~  234 (666)
                      +|||+++|+++|||++.++.+++.+++++++++++|++....     .......+..+. ++..                
T Consensus        85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~-~~~~----------------  142 (505)
T 3nyq_A           85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE-----LPPALGALERVD-VDVR----------------  142 (505)
T ss_dssp             HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC-----CCGGGTTSEEEE-CCTT----------------
T ss_pred             HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc-----cchhhccccccc-cccc----------------
Confidence            999999999999999999999999999999999999986421     001112222221 1110                


Q ss_pred             ehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH
Q 005991          235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN  314 (666)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (666)
                               .....+....+++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++..
T Consensus       143 ---------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~  213 (505)
T 3nyq_A          143 ---------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVL  213 (505)
T ss_dssp             ---------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTT
T ss_pred             ---------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHH
Confidence                     00112223457899999999999999999999999999999988888889999999999999999999875


Q ss_pred             -HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991          315 -QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (666)
Q Consensus       315 -~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (666)
                       ++.++..|+++++.+ +++..+++.+ ++++|+++++|+++..+.+.+.....    .                     
T Consensus       214 ~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~----~---------------------  267 (505)
T 3nyq_A          214 GILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE----L---------------------  267 (505)
T ss_dssp             TTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH----H---------------------
T ss_pred             HHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch----h---------------------
Confidence             778999999999887 7999999999 88999999999999988763211100    0                     


Q ss_pred             CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCc
Q 005991          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPAC  472 (666)
Q Consensus       393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~  472 (666)
                                   .. ..+++|.+++||+++++++.+++.+.++++++|.||+||++..++.........+++|+|++++
T Consensus       268 -------------~~-~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~  333 (505)
T 3nyq_A          268 -------------AK-ALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGV  333 (505)
T ss_dssp             -------------HH-HHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTC
T ss_pred             -------------hc-ccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCC
Confidence                         00 0037899999999999999999999899999999999999887766655566778999999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC-CCeEEcC
Q 005991          473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK-KNIFKLA  551 (666)
Q Consensus       473 ~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~-~d~ikl~  551 (666)
                      +++|+| +++..++...+++.|||+|+|++++.|||++|+.|+++|..+|||+|||+|++++||+|+|+||+ ||+||+ 
T Consensus       334 ~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-  411 (505)
T 3nyq_A          334 ELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS-  411 (505)
T ss_dssp             EEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEE-
T ss_pred             EEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEe-
Confidence            999999 55565555333458999999999999999999999999988999999999999999999999998 599997 


Q ss_pred             CeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh-------hHHHHHHHHcCCCcccccccccCcchhH
Q 005991          552 QGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP-------DVLKDWAASQGIKVIYCFSFRANSHVIF  621 (666)
Q Consensus       552 ~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------~~l~~~~~~~~l~~~~~~~~~~p~~i~~  621 (666)
                      +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.+       ++++++++++ |+     .|++|+.|.+
T Consensus       412 ~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~-L~-----~~~~P~~i~~  485 (505)
T 3nyq_A          412 GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAAR-LA-----PHKRPRVVRY  485 (505)
T ss_dssp             TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHH-TC-----GGGSCSEEEE
T ss_pred             CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhh-CC-----CCcCccEEEE
Confidence            8999999999999999999999999987653   58999999743       6899999999 98     9999999999


Q ss_pred             HH-HHHHHhhhhhhhhhcc
Q 005991          622 IA-LIHNLCQLYSSKELFR  639 (666)
Q Consensus       622 v~-~~~~~~gK~~r~~l~~  639 (666)
                      ++ +|++.+||++|++|+|
T Consensus       486 v~~lP~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          486 LDAVPRNDMGKIMKRALNR  504 (505)
T ss_dssp             CSCCCC-------------
T ss_pred             ECCCCCCCCcCeeHHhhcc
Confidence            95 8888899999999987

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=1.1e-75  Score=711.61  Aligned_cols=521  Identities=19%  Similarity=0.245  Sum_probs=433.0

Q ss_pred             hHHHhhHHHHhhccccCCcCCCccccCCCCccccccCCCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHH
Q 005991            4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD   83 (666)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~   83 (666)
                      ..++++|.++|++++++|+.+++++++..+....                   .+...+...      ..+. ...++++
T Consensus       415 ~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~e~~-------------------~~~~~~~~~------~~~~-~~~~l~~  468 (1304)
T 2vsq_A          415 LRLKSQLLTAIQQLIQNPDQPVSTINLVDDRERE-------------------FLLTGLNPP------AQAH-ETKPLTY  468 (1304)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSBGGGCCCCCHHHHH-------------------HHHTTTSCC------CCCC-CCCCHHH
T ss_pred             HHHHHHHHHHHHHhccCccccccccCCCCHHHHH-------------------HHHHhcCCC------CCCC-CCCCHHH
Confidence            4678999999999999999999999987654210                   000111100      0111 2378999


Q ss_pred             HHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005991           84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY  163 (666)
Q Consensus        84 ~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~  163 (666)
                      +|+++++++||++|+.+.   +      +.+||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|+
T Consensus       469 ~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~  539 (1304)
T 2vsq_A          469 WFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGA  539 (1304)
T ss_dssp             HHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCC
Confidence            999999999999999753   2      3599999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcC
Q 005991          164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQG  243 (666)
Q Consensus       164 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (666)
                      ++|||+|.++.+++.++++++++++++++......+    ..++.....+.+++..                  .. .. 
T Consensus       540 ~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~----~~~~~~~~~~~~~~~~------------------~~-~~-  595 (1304)
T 2vsq_A          540 AYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQA----AELPYTGTTLFIDDQT------------------RF-EE-  595 (1304)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTS----TTCCCCSEEEESSCGG------------------GG-GS-
T ss_pred             EEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhh----hccCCCCcEEEecccc------------------cc-cc-
Confidence            999999999999999999999999999987643321    1223223333332210                  00 00 


Q ss_pred             CCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCc
Q 005991          244 CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGV  323 (666)
Q Consensus       244 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~  323 (666)
                       ....+.....++++|||+|||||||.||||+++|+++.+. .+....++++++|+++++.|++|+.+...++.+++.|+
T Consensus       596 -~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~  673 (1304)
T 2vsq_A          596 -QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAA  673 (1304)
T ss_dssp             -CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred             -ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCC
Confidence             1112233457899999999999999999999999999876 44556678899999999999999999888999999999


Q ss_pred             EEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhH
Q 005991          324 AVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR  399 (666)
Q Consensus       324 ~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~  399 (666)
                      ++++.+    .++..+.+.|+++++|++.++|+++..+.+.....                                   
T Consensus       674 ~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~-----------------------------------  718 (1304)
T 2vsq_A          674 RLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW-----------------------------------  718 (1304)
T ss_dssp             EEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH-----------------------------------
T ss_pred             EEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhc-----------------------------------
Confidence            999987    58999999999999999999999999886520000                                   


Q ss_pred             HhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCC----CCCCCCccCCccCcEE
Q 005991          400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG----DNLSGHVGSPNPACEI  474 (666)
Q Consensus       400 ~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p~~~~~v  474 (666)
                        +        +++|.+++||+++++++.+.|.+.+ +++++|+||+||++++++.....    .....++|+|++|+++
T Consensus       719 --~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~  788 (1304)
T 2vsq_A          719 --M--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASV  788 (1304)
T ss_dssp             --H--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEE
T ss_pred             --C--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEE
Confidence              0        2799999999999999999888777 47899999999999877654332    2345689999999999


Q ss_pred             EEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC------CCCeeecccEEEEecCCcEEEEccCCCeE
Q 005991          475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID------GDGWLHTGDIGLWLPGGRLKIIDRKKNIF  548 (666)
Q Consensus       475 ~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~l~i~GR~~d~i  548 (666)
                      +|+| ++++.++.|.   .|||||+|+++++||+|+|+.|+++|.      +++||||||+|++++||.|+|+||+||+|
T Consensus       789 ~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qv  864 (1304)
T 2vsq_A          789 YILN-EQSQLQPFGA---VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQV  864 (1304)
T ss_dssp             EEEC-TTSCBCCTTC---CEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred             EEEC-CCcCCCCCCC---ceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEE
Confidence            9999 6667777665   899999999999999999999999993      35699999999999999999999999999


Q ss_pred             EcCCeeeeccHHHHHHHhcCcCcceEEEEEeCC---CCeEEEEEEc----ChhHHHHHHHHcCCCcccccccccCcchhH
Q 005991          549 KLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAV----DPDVLKDWAASQGIKVIYCFSFRANSHVIF  621 (666)
Q Consensus       549 kl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~----~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~  621 (666)
                      |+ +|+||+|.|||++|.+||+|.+|+|++.++   .+.++|+|++    +.++++++++++ |+     .|++|..+++
T Consensus       865 ki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~~~~~l~~~l~~~-Lp-----~ymvP~~~~~  937 (1304)
T 2vsq_A          865 KI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQ-LP-----AYMVPQTFTF  937 (1304)
T ss_dssp             EE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSSCHHHHHHHHHHH-SC-----GGGSCSEEEE
T ss_pred             EE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCCCHHHHHHHHHHh-Ch-----HhhhccEEEE
Confidence            98 899999999999999999999999998764   3689999996    357899999999 98     9999999999


Q ss_pred             HH-HHHHHhhhhhhhhhccch
Q 005991          622 IA-LIHNLCQLYSSKELFRSR  641 (666)
Q Consensus       622 v~-~~~~~~gK~~r~~l~~~~  641 (666)
                      ++ +|.+.+||++|++|.+..
T Consensus       938 l~~lP~t~~GKidR~~L~~~~  958 (1304)
T 2vsq_A          938 LDELPLTTNGKVNKRLLPKPD  958 (1304)
T ss_dssp             ESCCCCCSSCSSCCSCCCCCC
T ss_pred             ecccCCCCCcccCHhhcCCcc
Confidence            95 888989999999998763

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=3.2e-76  Score=653.25  Aligned_cols=473  Identities=20%  Similarity=0.209  Sum_probs=392.1

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      +.|+.++|++.++++||++|+.+.   +      +++||+||+++++++|++|.+.|+++||+|+++++|+++|++++||
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA   73 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDCL---G------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA   73 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcceecC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999753   2      4699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehH
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (666)
                      |+++|+++||+++.++.+++.+++++++++++|++.+....       +                      .+.....+.
T Consensus        74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~-------~----------------------~~~~~~~~~  124 (521)
T 3l8c_A           74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLT-------I----------------------EGISLVSLS  124 (521)
T ss_dssp             HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSC-------C----------------------TTSEEEEHH
T ss_pred             HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccc-------c----------------------ccCcccchh
Confidence            99999999999999999999999999999999998653211       0                      112233444


Q ss_pred             HHHhcC--CCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc--cccCCCcEEEEcCChHHHHHHH
Q 005991          238 QLQSQG--CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM--VQFYPSDIYMSYLPLAHIYERA  313 (666)
Q Consensus       238 ~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~~~~  313 (666)
                      ++....  ...........++|+++|+|||||||.||||++||+++.+.+.+....  +++.+++++++.+|++|.+++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  204 (521)
T 3l8c_A          125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM  204 (521)
T ss_dssp             HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH
T ss_pred             hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH
Confidence            332211  111122334678999999999999999999999999999887766554  6778899999999999999988


Q ss_pred             HHHHHHHhCcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005991          314 NQIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (666)
Q Consensus       314 ~~~~~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (666)
                      ..+.++..|+++++.+    .++..+++.+.++++|++.++|+++..+......                          
T Consensus       205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------  258 (521)
T 3l8c_A          205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF--------------------------  258 (521)
T ss_dssp             HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC--------------------------
T ss_pred             HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc--------------------------
Confidence            8888999999999887    3899999999999999999999999876541000                          


Q ss_pred             CCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCC-----CCCC
Q 005991          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD-----NLSG  463 (666)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-----~~~~  463 (666)
                        .              ....+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......     ...+
T Consensus       259 --~--------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~  322 (521)
T 3l8c_A          259 --C--------------QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRL  322 (521)
T ss_dssp             --S--------------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSC
T ss_pred             --c--------------cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCcc
Confidence              0              00014899999999999999999998887 899999999999987665443221     3557


Q ss_pred             CccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhcc---CCCCeeecccEEEEecCCcEEE
Q 005991          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIGLWLPGGRLKI  540 (666)
Q Consensus       464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i  540 (666)
                      ++|+|+++++++|+| +++..++.++   .|||+|+||+++.|||++|+.|++.|   +++|||+|||+|++|+||+|+|
T Consensus       323 ~vG~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~  398 (521)
T 3l8c_A          323 PIGYPKPDSPTYIID-EDGKELSSGE---QGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLY  398 (521)
T ss_dssp             EEEEECTTSCEEEEC-TTSCBCCTTC---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEE
T ss_pred             ccccccCCCEEEEEC-CCcCCCCCCC---ceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEE
Confidence            899999999999999 6667676665   89999999999999999999999998   6788999999999999999999


Q ss_pred             EccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC----CeEEEEEEcCh-------------hHHHHHHHHc
Q 005991          541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN----SCLVAIVAVDP-------------DVLKDWAASQ  603 (666)
Q Consensus       541 ~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~----~~~va~vv~~~-------------~~l~~~~~~~  603 (666)
                      +||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.    +.++|+|++++             ++++++++++
T Consensus       399 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~  477 (521)
T 3l8c_A          399 GGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDH  477 (521)
T ss_dssp             EEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGG
T ss_pred             eCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhh
Confidence            9999999997 8999999999999999999999999986532    56889998753             4677888888


Q ss_pred             CCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccch
Q 005991          604 GIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSR  641 (666)
Q Consensus       604 ~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~  641 (666)
                       |+     .|++|+.|.+++ +|++.+||++|++|++.-
T Consensus       478 -l~-----~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~  510 (521)
T 3l8c_A          478 -MM-----SYMMPSKFLYRDSLPLTPNGKIDIKTLINEV  510 (521)
T ss_dssp             -SC-----GGGSCSEEEECSSCCBCTTSSBCHHHHHHHT
T ss_pred             -Cc-----cccCCeEEEEecccCCCCCcCccHHHHhhhh
Confidence             87     999999999995 888889999999998873

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=4.9e-76  Score=648.56  Aligned_cols=481  Identities=19%  Similarity=0.240  Sum_probs=376.1

Q ss_pred             CHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005991           80 TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS  159 (666)
Q Consensus        80 tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~  159 (666)
                      ||.++|.++++++||++|+.+.   +      +++||+||+++++++|++|.+.   +||+|+|+++|+++|++++|||+
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~   69 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW   69 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence            5678899999999999999753   2      4699999999999999999987   89999999999999999999999


Q ss_pred             hcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEE-ehHH
Q 005991          160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI-SYLQ  238 (666)
Q Consensus       160 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~  238 (666)
                      ++|++++|+++.++.+++.+++++++++++|++........... ....+..+...........   ........ ..+.
T Consensus        70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  145 (501)
T 3ipl_A           70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITTNGLLD---NTMGIQYDTSNET  145 (501)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEE-ETTC-------------------------------
T ss_pred             HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccc-ccccceeeeeecccccccc---cccccccccchhh
Confidence            99999999999999999999999999999999876533221111 0111111111000000000   00000000 0011


Q ss_pred             HHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHH
Q 005991          239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS  318 (666)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~  318 (666)
                      ...............+++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~  225 (501)
T 3ipl_A          146 VVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRA  225 (501)
T ss_dssp             ----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred             ccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHH
Confidence            11101000112234578999999999999999999999999999999888888899999999999999999999988899


Q ss_pred             HHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhh
Q 005991          319 VYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW  397 (666)
Q Consensus       319 l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~  397 (666)
                      ++.|+++++.+ +++..+++.++++++|++.++|+++..|.+....                                  
T Consensus       226 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------------  271 (501)
T 3ipl_A          226 VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH----------------------------------  271 (501)
T ss_dssp             HHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------------
T ss_pred             HHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------------
Confidence            99999999987 7999999999999999999999999988663100                                  


Q ss_pred             hHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC--CCCCCCccCCccCcEEE
Q 005991          398 DRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--DNLSGHVGSPNPACEIK  475 (666)
Q Consensus       398 d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~  475 (666)
                                 ...++|.+++||+++++++.+.+.+ +++++++.||+||+++.++.....  ....+++|+|+++++++
T Consensus       272 -----------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~  339 (501)
T 3ipl_A          272 -----------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK  339 (501)
T ss_dssp             -----------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEE
T ss_pred             -----------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEE
Confidence                       0027999999999999999999987 699999999999998755443332  24668899999999999


Q ss_pred             EEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeee
Q 005991          476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY  555 (666)
Q Consensus       476 ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~  555 (666)
                      |+|.+      .+   +.|||+|+|+++++|||++|+.|.+ | .+|||+|||+|++|+||+|+|+||+||+||+ +|++
T Consensus       340 i~d~~------~~---~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~  407 (501)
T 3ipl_A          340 IKNPN------KE---GHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGEN  407 (501)
T ss_dssp             EESCC------SS---CCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCE
T ss_pred             EecCC------CC---CccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEE-CCEE
Confidence            99943      22   3799999999999999999999988 6 6899999999999999999999999999996 8999


Q ss_pred             eccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc----ChhHHHHHHHHcCCCcccccccccCcchhHHH-HHHH
Q 005991          556 VAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV----DPDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHN  627 (666)
Q Consensus       556 v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~  627 (666)
                      |+|.|||++|.+||+|.+|+|++.+++   +.++|+|++    +.++++++++++ |+     .|++|+.|.+++ +|++
T Consensus       408 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~~~-L~-----~~~~P~~i~~v~~lP~t  481 (501)
T 3ipl_A          408 IYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLSKH-LA-----KYKVPKHFEKVDTLPYT  481 (501)
T ss_dssp             ECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHHH-SC-----GGGSCSEEEECSSCC--
T ss_pred             ECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHHhh-Cc-----cccCCCEEEEecccCCC
Confidence            999999999999999999999987654   467888886    457999999999 98     999999999995 8899


Q ss_pred             Hhhhhhhhhhccc
Q 005991          628 LCQLYSSKELFRS  640 (666)
Q Consensus       628 ~~gK~~r~~l~~~  640 (666)
                      .+||++|++|++.
T Consensus       482 ~~GKi~R~~l~~~  494 (501)
T 3ipl_A          482 STGKLQRNKLYRE  494 (501)
T ss_dssp             -------------
T ss_pred             CCCCEeHHHHhhc
Confidence            9999999999987

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.1e-73  Score=638.50  Aligned_cols=485  Identities=16%  Similarity=0.166  Sum_probs=315.1

Q ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEEe-ccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991           76 PEIGTLHDNFIYAVENYPDYKYLGTRVR-VDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (666)
Q Consensus        76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~-~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  154 (666)
                      .+..|+.++|+++++++||++|+.+... .+......+++||+||+++++++|++|.+.|+ +||+|+++++|+++|+++
T Consensus        17 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~   95 (562)
T 3ite_A           17 TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI   95 (562)
T ss_dssp             -CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHH
T ss_pred             cccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHH
Confidence            3457899999999999999999987611 01111234789999999999999999999999 799999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEE
Q 005991          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (666)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~  234 (666)
                      +|||+++|+++||+++.++.+++.+++++++++++|++......+     ..+....++..+.                .
T Consensus        96 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~----------------~  154 (562)
T 3ite_A           96 IVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN----------------Q  154 (562)
T ss_dssp             HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC----------------H
T ss_pred             HHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc----------------h
Confidence            999999999999999999999999999999999999986543211     1111112221110                1


Q ss_pred             ehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc--------cccCCCcEEEEcCCh
Q 005991          235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM--------VQFYPSDIYMSYLPL  306 (666)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--------~~~~~~d~~l~~~pl  306 (666)
                      .+.+....... ........++++++|+|||||||.||||++||+++.+.+..+...        ..+...+++++..|+
T Consensus       155 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (562)
T 3ite_A          155 SFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASR  233 (562)
T ss_dssp             HHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCT
T ss_pred             hhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCc
Confidence            22222222211 122234567889999999999999999999999998877654332        457788999999999


Q ss_pred             HHHHHHHHHHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005991          307 AHIYERANQIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK  384 (666)
Q Consensus       307 ~h~~~~~~~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~  384 (666)
                      +|..++...+.++..|+++++.+  ..+..+.+.++++++|++.++|+++..+...                        
T Consensus       234 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------------------------  289 (562)
T 3ite_A          234 AFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------------------------  289 (562)
T ss_dssp             TSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------------------------
T ss_pred             hhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------------------------
Confidence            99999888889999999999876  3457788999999999999999987654210                        


Q ss_pred             HHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCC-CCCCCC
Q 005991          385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK-GDNLSG  463 (666)
Q Consensus       385 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~  463 (666)
                              +              ...+++|.+++||+++++++.++|++.+++++++.||+||++..++.... .....+
T Consensus       290 --------~--------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~  347 (562)
T 3ite_A          290 --------P--------------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTR  347 (562)
T ss_dssp             --------G--------------GGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTT
T ss_pred             --------c--------------cccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCc
Confidence                    0              00148999999999999999999998889999999999999876665443 235567


Q ss_pred             CccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCC--eeecccEEEEecCCcEEEE
Q 005991          464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG--WLHTGDIGLWLPGGRLKII  541 (666)
Q Consensus       464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g--w~~TGDlg~~~~dG~l~i~  541 (666)
                      ++|+|+++++++|+|.+++..++.|+   .|||||+|++++.|||++|+.|+..+ .+|  ||+|||+|++|+||+|+|+
T Consensus       348 ~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~  423 (562)
T 3ite_A          348 CIGHPLGDSVAHVLAPGSNEHVKKGM---AGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFL  423 (562)
T ss_dssp             EEEEECTTCEEEEECTTSSCBCCTTS---CEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEE
T ss_pred             cccccCCCCeEEEEeCCCCCCCCCCC---ceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEE
Confidence            89999999999999976666676665   89999999999999999999998776 344  9999999999999999999


Q ss_pred             ccCCCeEEcCCeeeeccHHHHHHHhcC-cCcceEEEEEeCCC---C-eEEEEEEcCh------------------hHHHH
Q 005991          542 DRKKNIFKLAQGEYVAPEKIENVYAKC-KFVLQCFIYGDSFN---S-CLVAIVAVDP------------------DVLKD  598 (666)
Q Consensus       542 GR~~d~ikl~~G~~v~p~eIE~~l~~~-p~V~~~~V~g~~~~---~-~~va~vv~~~------------------~~l~~  598 (666)
                      ||+||+||+ +|+||+|.|||++|.+| |.|.+++|++.+++   + .+++++....                  +++++
T Consensus       424 GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~  502 (562)
T 3ite_A          424 GRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQ  502 (562)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             ccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHH
Confidence            999999997 89999999999999988 88888888876543   2 3445554321                  37889


Q ss_pred             HHHHcCCCcccccccccCcchhHHH-HHHH-Hhhhhhhhhhccc
Q 005991          599 WAASQGIKVIYCFSFRANSHVIFIA-LIHN-LCQLYSSKELFRS  640 (666)
Q Consensus       599 ~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~-~~gK~~r~~l~~~  640 (666)
                      +|+++ |+     .|++|+.|.+++ +|++ .+||++|++|++.
T Consensus       503 ~~~~~-L~-----~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~  540 (562)
T 3ite_A          503 ACEQT-LP-----AYMVPDFIIPISFIPLRDTSAKTDAKALEHM  540 (562)
T ss_dssp             --------------------------------------------
T ss_pred             HHHhh-CC-----cccCCcEEEEeccCCCCCCCCcchHHHHHHH
Confidence            99988 88     999999999996 6657 7799999999987

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.6e-73  Score=640.01  Aligned_cols=488  Identities=21%  Similarity=0.251  Sum_probs=395.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...|+.++|.++++++||++|+.+.   ++  +..+++||+||.++++++|++|+++|+++||+|+++++|+++|++++|
T Consensus         9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   83 (590)
T 3kxw_A            9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL   83 (590)
T ss_dssp             TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence            4679999999999999999999876   32  234679999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCC---CHHHHHHHHHhcCceEEEEccccHHHHHHhh-hcCCCceEEEEeCCCCCCCCCCCCCCCcE
Q 005991          157 ACSAYSYISVPLYDTL---GPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI-SEIPSVHLIVVVGGKDEHLPSLPSTSGVK  232 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~  232 (666)
                      ||+++|+++||+++.+   +.+++.++++++++++++++......+.... ...+.+..+                   .
T Consensus        84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-------------------~  144 (590)
T 3kxw_A           84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI-------------------P  144 (590)
T ss_dssp             HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE-------------------E
T ss_pred             HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc-------------------c
Confidence            9999999999999988   4578999999999999999987655543221 112211111                   1


Q ss_pred             EEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHH
Q 005991          233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER  312 (666)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  312 (666)
                      ....+.+.... ..........++|+++|+|||||||.||||++||+++++.+.+....+++.++|++++++|++|++++
T Consensus       145 ~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~  223 (590)
T 3kxw_A          145 AIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGL  223 (590)
T ss_dssp             EEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred             eeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhh
Confidence            12222221111 11122335678999999999999999999999999999999988888999999999999999999999


Q ss_pred             HH-HHHHHHhCcEEEEec-C----CHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005991          313 AN-QIVSVYYGVAVGFYQ-G----DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA  386 (666)
Q Consensus       313 ~~-~~~~l~~G~~~~~~~-~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~  386 (666)
                      .. ++.+++.|+++++.+ +    ++..+++.|+++++|++.++|.++..+.+.+......                   
T Consensus       224 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-------------------  284 (590)
T 3kxw_A          224 IGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKE-------------------  284 (590)
T ss_dssp             HTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGT-------------------
T ss_pred             HHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhcc-------------------
Confidence            87 778999999999987 2    8999999999999999999999998887632111000                   


Q ss_pred             HHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC------CccccCcccchhhhhhhccCCC--
Q 005991          387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG------CQVMEGYGMTETSCIISAIDKG--  458 (666)
Q Consensus       387 ~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~~~~~~~~--  458 (666)
                                          ....+++|.+++||+++++++.+.|.+.++      +++++.||+||++++++.....  
T Consensus       285 --------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~  344 (590)
T 3kxw_A          285 --------------------GLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSS  344 (590)
T ss_dssp             --------------------TCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSC
T ss_pred             --------------------CCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCC
Confidence                                001158999999999999999999998873      4799999999999876654321  


Q ss_pred             -------------------------CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhh
Q 005991          459 -------------------------DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQ  513 (666)
Q Consensus       459 -------------------------~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~  513 (666)
                                               ....+++|+|+++  ++|+|.+++..++.++   .|||||+||+++.|||++|+.
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~  419 (590)
T 3kxw_A          345 YKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ---VGEIWVQSNSVAKGYWNQPEE  419 (590)
T ss_dssp             CCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB---CEEEEEESTTSCCCBTTCHHH
T ss_pred             ceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC---EEEEEEeCCcccccccCChhH
Confidence                                     1234678999998  8889966677776665   899999999999999999999


Q ss_pred             hhhccCC------CC--eeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHH-hcCcCcc--eEEEEEeCC-
Q 005991          514 TREVIDG------DG--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVY-AKCKFVL--QCFIYGDSF-  581 (666)
Q Consensus       514 t~~~~~~------~g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l-~~~p~V~--~~~V~g~~~-  581 (666)
                      |+++|..      +|  ||+|||+|++| ||.|+|+||+||+||+ +|+||+|.|||++| ..+|.|.  +|+|++.++ 
T Consensus       420 t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~  497 (590)
T 3kxw_A          420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEE  497 (590)
T ss_dssp             HHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEET
T ss_pred             HHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecCC
Confidence            9999943      24  99999999999 9999999999999998 89999999999999 8999998  788887554 


Q ss_pred             -CCeEEEEEEcC--------hhHHHHHHHHcCCCcccccccccCc-chhHH---HHHHHHhhhhhhhhhccc
Q 005991          582 -NSCLVAIVAVD--------PDVLKDWAASQGIKVIYCFSFRANS-HVIFI---ALIHNLCQLYSSKELFRS  640 (666)
Q Consensus       582 -~~~~va~vv~~--------~~~l~~~~~~~~l~~~~~~~~~~p~-~i~~v---~~~~~~~gK~~r~~l~~~  640 (666)
                       .+.+++++++.        .+++.++++++ ++    ..+++|. .+.++   ++|++.+||++|++|++.
T Consensus       498 ~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~-l~----~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~  564 (590)
T 3kxw_A          498 HEYKLTVMCEVKNRFMDDVAQDNLFNEIFEL-VY----ENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKH  564 (590)
T ss_dssp             TEEEEEEEEEESCTTCCHHHHHHHHHHHHHH-HH----HHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHH
T ss_pred             CCceEEEEEEeccccccchhHHHHHHHHHHH-HH----HHcCCceeEEEEECCCccCcCCCcHHHHHHHHHH
Confidence             35777887753        25677888887 64    1377775 55565   489999999999999876

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=2.1e-62  Score=537.34  Aligned_cols=400  Identities=19%  Similarity=0.206  Sum_probs=317.4

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...|+.++|.++++++||++|+++....++..+..+++||+||.++++++|++|+++|+ +||+|+|+++|+++|++++|
T Consensus        22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l  100 (480)
T 3t5a_A           22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL  100 (480)
T ss_dssp             --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence            35799999999999999999998862111223345789999999999999999999996 99999999999999999999


Q ss_pred             HHHhcCCeEEecCC---CCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCc--eEEEEeCCCCCCCCCCCCCCCc
Q 005991          157 ACSAYSYISVPLYD---TLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV--HLIVVVGGKDEHLPSLPSTSGV  231 (666)
Q Consensus       157 A~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l--~~ii~~~~~~~~~~~~~~~~~~  231 (666)
                      ||+++|+++|||++   .++.+++.+++++++++++|++......+.+.....+..  ..++.++...            
T Consensus       101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  168 (480)
T 3t5a_A          101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------  168 (480)
T ss_dssp             HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred             HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence            99999999999999   788999999999999999999998877776654433321  1233322211            


Q ss_pred             EEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCC------CcEEEEcCC
Q 005991          232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYP------SDIYMSYLP  305 (666)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~d~~l~~~p  305 (666)
                               .. .....+.....++++++|+|||||||.||||++||+++.+.+.+....+.+..      +|++++++|
T Consensus       169 ---------~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  238 (480)
T 3t5a_A          169 ---------LD-APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP  238 (480)
T ss_dssp             ---------TT-CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCC
T ss_pred             ---------cc-cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCC
Confidence                     10 01112233457899999999999999999999999999998887777777766      999999999


Q ss_pred             hHHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 005991          306 LAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA  379 (666)
Q Consensus       306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~  379 (666)
                      ++|++++.. ++.+++.|+++++.+     .++..+++.++++++| +..+|+++..++.......              
T Consensus       239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~--------------  303 (480)
T 3t5a_A          239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDD--------------  303 (480)
T ss_dssp             TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTG--------------
T ss_pred             CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcc--------------
Confidence            999999765 678999999999986     3899999999999999 8899999887765311000              


Q ss_pred             HHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC------CccccCcccchhhhhhh
Q 005991          380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG------CQVMEGYGMTETSCIIS  453 (666)
Q Consensus       380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~~~  453 (666)
                                              .......++||.+++||+++++++.++|.+.++      +.+++.||+||++.+++
T Consensus       304 ------------------------~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  359 (480)
T 3t5a_A          304 ------------------------DMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA  359 (480)
T ss_dssp             ------------------------GGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred             ------------------------cccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence                                    000001158999999999999999999998874      47999999999998776


Q ss_pred             ccCCCC-------------------------CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCcccc
Q 005991          454 AIDKGD-------------------------NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYY  508 (666)
Q Consensus       454 ~~~~~~-------------------------~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~  508 (666)
                      ......                         ...+++|+|++ ++++|+|.+++..++.|+   .|||||+|++++.|||
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~  435 (480)
T 3t5a_A          360 TSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT---VGEIWVHGDNVANGYW  435 (480)
T ss_dssp             ECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB---CEEEEEESTTSCCCBT
T ss_pred             ecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC---EEEEEEeCCccccccc
Confidence            654321                         23458999999 999999966677777665   8999999999999999


Q ss_pred             CChhhhhhccC-----------CCCeeecccEEEEecCCcEEEEcc
Q 005991          509 KNEVQTREVID-----------GDGWLHTGDIGLWLPGGRLKIIDR  543 (666)
Q Consensus       509 ~~~~~t~~~~~-----------~~gw~~TGDlg~~~~dG~l~i~GR  543 (666)
                      ++|+.|+++|+           .+|||||||+|+++ ||+|+|+||
T Consensus       436 ~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          436 QKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             TBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             cCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            99999999995           57899999999997 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=2.8e-53  Score=444.70  Aligned_cols=303  Identities=15%  Similarity=0.164  Sum_probs=260.7

Q ss_pred             CCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCCHHH
Q 005991          255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLK  334 (666)
Q Consensus       255 ~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~  334 (666)
                      .|+++||+|||||||.||||++||+++.+.+......++++++|++++++|++|++++..++.++..|+++++.+.. ..
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~-~~  114 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT-AN  114 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC-SC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc-cc
Confidence            37899999999999999999999999999999888889999999999999999999999988999999999887632 23


Q ss_pred             HHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceE
Q 005991          335 LMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR  414 (666)
Q Consensus       335 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr  414 (666)
                      .++.++++++|++.++|+++..|++....                                ..+           .+++|
T Consensus       115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------~~~-----------l~~lr  151 (358)
T 4gs5_A          115 PLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------SGQ-----------VDRLG  151 (358)
T ss_dssp             TTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------GGG-----------GGGGC
T ss_pred             HHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------ccc-----------CCcce
Confidence            46678899999999999999988752100                                000           14899


Q ss_pred             EEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCcc
Q 005991          415 FMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRG  494 (666)
Q Consensus       415 ~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~G  494 (666)
                      .+++||+++++++.+++++ ++++++++||+||++..++.........+.+|.+.||+++.+.+              .|
T Consensus       152 ~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~--------------~G  216 (358)
T 4gs5_A          152 KVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE--------------RG  216 (358)
T ss_dssp             SEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT--------------TS
T ss_pred             EEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEecC--------------cC
Confidence            9999999999999999987 69999999999999988887777777788999999999988744              69


Q ss_pred             EEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHH---hcCcCc
Q 005991          495 EICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVY---AKCKFV  571 (666)
Q Consensus       495 El~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l---~~~p~V  571 (666)
                      ||+++|+..                .+|||+|||+|++|+|| ++|+||+||+||+ +|+||+|.|||++|   .+||+|
T Consensus       217 el~~~g~~~----------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V  278 (358)
T 4gs5_A          217 CLHISGAVT----------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNI  278 (358)
T ss_dssp             EEEEESGGG----------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTC
T ss_pred             ceEEecccc----------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCc
Confidence            999998632                58999999999999988 7778999999997 89999999999887   468999


Q ss_pred             ceEEEE-EeCCC---CeEEEEEEcCh-----hHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          572 LQCFIY-GDSFN---SCLVAIVAVDP-----DVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       572 ~~~~V~-g~~~~---~~~va~vv~~~-----~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      .+|+|+ +.+++   +.++|+|++..     ++++++++++ |+     .|++|+.|++++ +|++.+||++|++|++.
T Consensus       279 ~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~-L~-----~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~  351 (358)
T 4gs5_A          279 GNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSR-VS-----TYENPKHIYFAKAFAKTQTDKIDKRATFQK  351 (358)
T ss_dssp             CCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHH-SC-----GGGSCSCEEEESSCCBCTTSCBCHHHHHHH
T ss_pred             cEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhh-CC-----CCCCceEEEEECCcCCCCCCChhHHHHHHH
Confidence            998886 44433   57888888643     6789999998 98     999999999995 88888899999999864

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=2.6e-49  Score=428.43  Aligned_cols=339  Identities=17%  Similarity=0.142  Sum_probs=270.6

Q ss_pred             EehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc---ccccCCCcEEEEcCCh-HHH
Q 005991          234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL---MVQFYPSDIYMSYLPL-AHI  309 (666)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl-~h~  309 (666)
                      .+.+++....   +.......++++++|+|||||||.||||++||+++...+.....   .+++.++|++++.+|+ +|.
T Consensus        73 ~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~  149 (443)
T 2y4o_A           73 STKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFT  149 (443)
T ss_dssp             BCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSH
T ss_pred             CcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccc
Confidence            4556665432   11223456789999999999999999999999998876554332   4678899999999998 578


Q ss_pred             HHHHHHHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005991          310 YERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV  388 (666)
Q Consensus       310 ~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~  388 (666)
                      .++...+.++..|+++++.+ +++..+++.|+++++|+++++|+++..|++.......                      
T Consensus       150 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~----------------------  207 (443)
T 2y4o_A          150 GGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM----------------------  207 (443)
T ss_dssp             HHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC----------------------
T ss_pred             cHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCC----------------------
Confidence            87777888999999998876 7999999999999999999999999988764321100                      


Q ss_pred             cCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhh-hhccCCCCCCCCCccC
Q 005991          389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCI-ISAIDKGDNLSGHVGS  467 (666)
Q Consensus       389 ~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG~  467 (666)
                         ..               ..+++|.+++||+++++++.+++++.+|+++++.||+||+++. ++.... ....+ .+.
T Consensus       208 ---~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~-~~~~g-~~~  267 (443)
T 2y4o_A          208 ---DP---------------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECV-ETKDG-PVI  267 (443)
T ss_dssp             ---CG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECT-TTCCS-EEE
T ss_pred             ---Cc---------------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccC-CCCCc-eEE
Confidence               00               0148999999999999999999999899999999999998543 222221 11112 455


Q ss_pred             CccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecC-CcE-----EEE
Q 005991          468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG-GRL-----KII  541 (666)
Q Consensus       468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-G~l-----~i~  541 (666)
                      |.++++++|+|+++++.++.|+   .|||+|+|.            |++.| .++||+|||+|+++++ |++     +|+
T Consensus       268 ~~~~~~~~i~d~~~g~~~~~G~---~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~  331 (443)
T 2y4o_A          268 WEDHFYPEIIDPVTGEVLPDGS---QGELVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKIT  331 (443)
T ss_dssp             CTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCCC
T ss_pred             ccCCeEEEEEcCCCCCCCCCCC---ceEEEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCccc
Confidence            6789999999976677777665   899999983            34556 6899999999999999 987     899


Q ss_pred             ccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeC---CCCeEEEEEEcCh-----------hHHHHHHHHcCCCc
Q 005991          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDP-----------DVLKDWAASQGIKV  607 (666)
Q Consensus       542 GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~-----------~~l~~~~~~~~l~~  607 (666)
                      ||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+   ..+.++|+|++++           ++++++++++ |+ 
T Consensus       332 GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~-l~-  408 (443)
T 2y4o_A          332 GRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHR-IK-  408 (443)
T ss_dssp             EESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHH-HH-
T ss_pred             cccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHH-HH-
Confidence            999999997 89999999999999999999999988743   2367889998875           4678888887 76 


Q ss_pred             cccccc-ccCcchhHH---HHHHHHhhhhhhhhhccc
Q 005991          608 IYCFSF-RANSHVIFI---ALIHNLCQLYSSKELFRS  640 (666)
Q Consensus       608 ~~~~~~-~~p~~i~~v---~~~~~~~gK~~r~~l~~~  640 (666)
                          .+ ++|..|.++   ++|++.+||++|+..+|.
T Consensus       409 ----~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~r~  441 (443)
T 2y4o_A          409 ----TMVGVSSGVTVLAAGGIPATATGKARRVIDRRQ  441 (443)
T ss_dssp             ----HHTCCCCEEEEECTTCSCCCTTSCCCSEEECCC
T ss_pred             ----HHhCCceEEEEeCCCcccCccCCcceEEEeccC
Confidence                55 588888777   588888899999877663

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=1.7e-48  Score=421.19  Aligned_cols=323  Identities=16%  Similarity=0.160  Sum_probs=259.4

Q ss_pred             CCCC-CCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc---ccccCCCcEEEEcCChHHHHHHH-HHHHHHHhCcEEE
Q 005991          252 PPKP-EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL---MVQFYPSDIYMSYLPLAHIYERA-NQIVSVYYGVAVG  326 (666)
Q Consensus       252 ~~~~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~~~  326 (666)
                      ...+ +++++|+|||||||.||||++||+++.+.+.....   .+++.++|++++++|+.|..+.. ..+.++..|++++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~  160 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV  160 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence            3456 89999999999999999999999999877665533   35788999999999987655544 4677899999999


Q ss_pred             Eec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHH
Q 005991          327 FYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI  405 (666)
Q Consensus       327 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~  405 (666)
                      +.+ +++..+++.|++++||+++++|+++..|++.......                         .+            
T Consensus       161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------~~------------  203 (436)
T 3qov_A          161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGI-------------------------DP------------  203 (436)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTC-------------------------CT------------
T ss_pred             eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCC-------------------------Cc------------
Confidence            876 7999999999999999999999999998875322110                         00            


Q ss_pred             HHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCC
Q 005991          406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT  485 (666)
Q Consensus       406 ~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~  485 (666)
                         ..+++|.+++||+++++++.+++++.+|+++++.||+||+++.++.....  .....|.|.++++++|+|++++..+
T Consensus       204 ---~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~~~~~~~~v~i~d~~~g~~~  278 (436)
T 3qov_A          204 ---RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMHFWEDCYLVEIIDPETGEPV  278 (436)
T ss_dssp             ---TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEEECTTTEEEEEECTTTCSBC
T ss_pred             ---ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeEEccCceEEEEEECCCCCCC
Confidence               01489999999999999999999999999999999999996542222221  1123677788999999997788888


Q ss_pred             CCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCC------c---EEEEccCCCeEEcCCeeee
Q 005991          486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGG------R---LKIIDRKKNIFKLAQGEYV  556 (666)
Q Consensus       486 ~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG------~---l~i~GR~~d~ikl~~G~~v  556 (666)
                      +.|+   .|||+|+|.            |++.| .++||+|||+|+++++|      +   ++|+||+||+||+ +|++|
T Consensus       279 ~~g~---~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~G~~v  341 (436)
T 3qov_A          279 PEGE---IGELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-KGVNI  341 (436)
T ss_dssp             STTC---CEEEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-TTEEE
T ss_pred             CCCC---ceEEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-CCEEE
Confidence            7775   899999984            34455 78999999999999998      5   6999999999998 89999


Q ss_pred             ccHHHHHHHhcCcCcceEEEEEeCC---CCeEEEEEEcC---------hhHHHHHHHHcCCCccccccc-ccCcchhHHH
Q 005991          557 APEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVD---------PDVLKDWAASQGIKVIYCFSF-RANSHVIFIA  623 (666)
Q Consensus       557 ~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~---------~~~l~~~~~~~~l~~~~~~~~-~~p~~i~~v~  623 (666)
                      +|.|||++|.+||+|.+++|++.++   .+.++|+|+++         .++++++++++ ++     .+ ++|..+.+++
T Consensus       342 ~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~-l~-----~~~~~p~~i~~v~  415 (436)
T 3qov_A          342 FPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELSDLSTDNYIELEKIRRDIIRQ-LK-----DEILVTPKVKLVK  415 (436)
T ss_dssp             CHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH-HH-----HHHSSCCEEEEEC
T ss_pred             CHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEcCccccchhhHHHHHHHHHHH-HH-----HhcCCceEEEEeC
Confidence            9999999999999999999988654   46899999975         34688888888 76     66 8899988885


Q ss_pred             ---HHHHHhhhhhhhhhccc
Q 005991          624 ---LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       624 ---~~~~~~gK~~r~~l~~~  640 (666)
                         +|++. ||++|...+|.
T Consensus       416 ~~~lP~t~-GKi~R~~~~R~  434 (436)
T 3qov_A          416 KGSLPQSE-GKAVRVKDLRD  434 (436)
T ss_dssp             TTCCC--------CEEECSC
T ss_pred             CCcccCcC-CcceEEEecCC
Confidence               88888 99999877765

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=4.4e-48  Score=418.03  Aligned_cols=337  Identities=18%  Similarity=0.128  Sum_probs=269.2

Q ss_pred             EehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc---ccccCCCcEEEEcCCh-HHH
Q 005991          234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL---MVQFYPSDIYMSYLPL-AHI  309 (666)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl-~h~  309 (666)
                      .+.+++.....   .......++++++|+|||||||.||||++||+++...+.....   .+++.++|++++.+|+ +|.
T Consensus        71 ~~~~~l~~~~~---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  147 (437)
T 2y27_A           71 TTKGDLRDSYP---FGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFT  147 (437)
T ss_dssp             BCHHHHHHTTT---TTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSH
T ss_pred             CCHHHHHhcCC---CccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccc
Confidence            44555554321   1223456799999999999999999999999998876654332   4678899999999998 788


Q ss_pred             HHHHHHHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005991          310 YERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV  388 (666)
Q Consensus       310 ~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~  388 (666)
                      .++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|++.......                      
T Consensus       148 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~----------------------  205 (437)
T 2y27_A          148 GGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGL----------------------  205 (437)
T ss_dssp             HHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC----------------------
T ss_pred             cchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCC----------------------
Confidence            88877888999999998776 6999999999999999999999999998774322100                      


Q ss_pred             cCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhh-hhccCCCCCCCCCccC
Q 005991          389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCI-ISAIDKGDNLSGHVGS  467 (666)
Q Consensus       389 ~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG~  467 (666)
                         ..               ..+++|.+++||+++++++.+++++.+|+++++.||+||+++. ++..... . ....+.
T Consensus       206 ---~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~-~-~~g~~~  265 (437)
T 2y27_A          206 ---DP---------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVE-T-KDGPTI  265 (437)
T ss_dssp             ---CG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTT-T-CSSCEE
T ss_pred             ---Cc---------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCC-C-CCceeE
Confidence               00               0148999999999999999999998889999999999998543 3322221 1 112556


Q ss_pred             CccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEec-CCcE-----EEE
Q 005991          468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP-GGRL-----KII  541 (666)
Q Consensus       468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~-dG~l-----~i~  541 (666)
                      |.++++++|+|++++..++.|+   .|||+|+|.            |++.| .++||+|||+|++++ +|++     +|+
T Consensus       266 ~~~~~~~~i~d~~~g~~~~~g~---~Gel~v~~~------------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~  329 (437)
T 2y27_A          266 WEDHFYPEIIDPETGEVLPDGE---LGELVFTSL------------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKIT  329 (437)
T ss_dssp             CTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCC
T ss_pred             ccCceEEEEEcCCCCCCCCCCC---ccEEEEecC------------CcCCc-hhheeecCCEEEEeCCCCCCccccCccc
Confidence            7789999999976677777665   899999983            44556 689999999999999 6986     999


Q ss_pred             ccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeC---CCCeEEEEEEcCh---------hHHHHHHHHcCCCccc
Q 005991          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDP---------DVLKDWAASQGIKVIY  609 (666)
Q Consensus       542 GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~---------~~l~~~~~~~~l~~~~  609 (666)
                      ||+||+||+ +|++|+|.+||++|.+||+|.+++|++.+   ..+.++|+|++++         ++++++++++ |+   
T Consensus       330 GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~-l~---  404 (437)
T 2y27_A          330 GRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYD-IK---  404 (437)
T ss_dssp             EEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHH-HH---
T ss_pred             cccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHH-HH---
Confidence            999999998 89999999999999999999999888743   2468899998753         4678888887 76   


Q ss_pred             cccc-ccCcchhHH---HHHHHHhhhhhhhhhcc
Q 005991          610 CFSF-RANSHVIFI---ALIHNLCQLYSSKELFR  639 (666)
Q Consensus       610 ~~~~-~~p~~i~~v---~~~~~~~gK~~r~~l~~  639 (666)
                        .+ ++|..|.++   ++|++. ||++|+..+|
T Consensus       405 --~~~~~p~~v~~v~~~~lP~t~-GKi~r~~~~R  435 (437)
T 2y27_A          405 --SLIGVTAVINVLPVNGIERSV-GKARRVVDKR  435 (437)
T ss_dssp             --HHHCCCEEEEECCTTCSCCCS-SSCCCEEECC
T ss_pred             --HhcCCceEEEEeCCCCccCCC-CcceEEEecC
Confidence              65 688888887   488888 9999988766

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.97  E-value=1.1e-30  Score=275.16  Aligned_cols=238  Identities=16%  Similarity=0.182  Sum_probs=175.9

Q ss_pred             CCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhc---ccccccCCCcEEEEcCCh-HHHHHHHHHHHHHHhCcEEEEe
Q 005991          253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF---SLMVQFYPSDIYMSYLPL-AHIYERANQIVSVYYGVAVGFY  328 (666)
Q Consensus       253 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~pl-~h~~~~~~~~~~l~~G~~~~~~  328 (666)
                      ..++++++|+|||||||.||||++||+++.+.+.+.   ....++.++|++++.+|+ +|.+++...+.++..|+.++..
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~  167 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI  167 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence            467899999999999999999999999999888743   344678899999999999 9999998888889999944433


Q ss_pred             cCCHH-----------------------HHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 005991          329 QGDNL-----------------------KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ  385 (666)
Q Consensus       329 ~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~  385 (666)
                      .+++.                       .+++.|+++++|++.++|+++..|++.....                     
T Consensus       168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~---------------------  226 (369)
T 3hgu_A          168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV---------------------  226 (369)
T ss_dssp             CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH---------------------
T ss_pred             cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh---------------------
Confidence            46777                       7888999999999999999999887631100                     


Q ss_pred             HHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHH-HHh-CCccccCcccchhhhhhhccCCCCCCCC
Q 005991          386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK-VCF-GCQVMEGYGMTETSCIISAIDKGDNLSG  463 (666)
Q Consensus       386 ~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~-~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~  463 (666)
                                           ....+++|.+++||+++++++.++++ +.+ ++++++.||+||+++++.....     .
T Consensus       227 ---------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~  280 (369)
T 3hgu_A          227 ---------------------LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----T  280 (369)
T ss_dssp             ---------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----C
T ss_pred             ---------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----c
Confidence                                 00003799999999999999999999 888 8999999999998865533211     1


Q ss_pred             CccCC------ccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecC--
Q 005991          464 HVGSP------NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG--  535 (666)
Q Consensus       464 ~vG~p------~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d--  535 (666)
                      ++|+|      .++++++|+|+++++.++.|+   .|||+|++..            ++.+  -.+|+|||++.+.+.  
T Consensus       281 ~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~---~GEl~vt~l~------------~~~~--l~ry~tgD~~~~~~~~~  343 (369)
T 3hgu_A          281 SESQQVIYDSFSPFITYDVVDSITAQTVEYGE---RGNVIVTHLS------------PWAF--YPRVAERDTAIRLPGVS  343 (369)
T ss_dssp             TTCSSCEEECCTTTEEEEEECTTTCSBCCTTC---EEEEEEEEEE------------TTEE--EEEEEEEEEEEEECCST
T ss_pred             cCCCcccccCCCCCeEEEEECCCCCcCCCCCC---ceEEEEEEcC------------cccc--cccccCCceEEEecCCC
Confidence            58999      999999999965788887775   8999999742            1112  234888888877543  


Q ss_pred             C-------cEEEEccCCCeEEcCCeee
Q 005991          536 G-------RLKIIDRKKNIFKLAQGEY  555 (666)
Q Consensus       536 G-------~l~i~GR~~d~ikl~~G~~  555 (666)
                      |       .+..++|.++..|| .|.+
T Consensus       344 g~~~d~~~~v~~~~~~~~~~~i-~gv~  369 (369)
T 3hgu_A          344 GFAGDRLADIEPLKISEGRKVI-EGVY  369 (369)
T ss_dssp             TCSSCEEEEEEECC-------------
T ss_pred             CCcCcccccceeccccCCCcee-eecC
Confidence            2       35677888888887 5653

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.07  E-value=1.5e-11  Score=104.12  Aligned_cols=87  Identities=14%  Similarity=0.122  Sum_probs=60.2

Q ss_pred             ccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------hHHHHHHHHcCCCccc
Q 005991          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------DVLKDWAASQGIKVIY  609 (666)
Q Consensus       542 GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~~l~~~~  609 (666)
                      .|.|||||+ +|.||+|.|||++|.+||+|.+++|++.++.   +.++++|+..+         +++.++++++ +.   
T Consensus         1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~-l~---   75 (109)
T 3lax_A            1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQ-LK---   75 (109)
T ss_dssp             CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH-HH---
T ss_pred             CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHH-HH---
Confidence            389999998 8999999999999999999999998875533   56777777532         2344444444 32   


Q ss_pred             ccccccCcchhHHH---HHHHHhhhhhhh
Q 005991          610 CFSFRANSHVIFIA---LIHNLCQLYSSK  635 (666)
Q Consensus       610 ~~~~~~p~~i~~v~---~~~~~~gK~~r~  635 (666)
                       ..+.+|..+.++.   +|++ +||+.|-
T Consensus        76 -~~~gv~~~v~~v~~~~lPrt-sGKi~Rv  102 (109)
T 3lax_A           76 -DEILVTPRVKLVPKGALPKS-EGKAVRV  102 (109)
T ss_dssp             -HHHSSCCEEEEECTTCSCCC----CCCE
T ss_pred             -HHhCCccceEEEcCCeecCC-CCCcchh
Confidence             1334555666663   6775 6998773

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.88  E-value=1.2e-08  Score=110.19  Aligned_cols=133  Identities=14%  Similarity=0.188  Sum_probs=84.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHh-CCccc-cCcccchhhhhhhccCCCCCCCCCccCC-ccC-cEEEEEecCCCC-----
Q 005991          413 VRFMGSGASPLSPDVMDFLKVCF-GCQVM-EGYGMTETSCIISAIDKGDNLSGHVGSP-NPA-CEIKLVDVPEMN-----  483 (666)
Q Consensus       413 lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~~v~ivd~~~~~-----  483 (666)
                      +..++.||.   ..-...++..+ +.++. ..|++||+.  ...+......+...|.. +|+ .-+..++.++.+     
T Consensus       302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v  376 (581)
T 4eql_A          302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT--FGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVV  376 (581)
T ss_dssp             EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE--EEECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCE
T ss_pred             EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce--eeeccCCCCCcccCceeecCCcEEEEEEeccccCCCcEe
Confidence            666677773   33334455544 67777 999999963  22222111122222322 233 334556543321     


Q ss_pred             CCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEec----CCcEEEEccCCCeEEcCCeeeeccH
Q 005991          484 YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP----GGRLKIIDRKKNIFKLAQGEYVAPE  559 (666)
Q Consensus       484 ~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~GR~~d~ikl~~G~~v~p~  559 (666)
                      ...+.+.|..+||.|+..+   |.|+              |++||+.++..    ...+.|+||.++++.+ .|++++++
T Consensus       377 ~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~  438 (581)
T 4eql_A          377 DLEDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE  438 (581)
T ss_dssp             EGGGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred             CHHHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence            1233345568999998753   4332              99999999986    3579999999999997 89999999


Q ss_pred             HHHHHHhcC
Q 005991          560 KIENVYAKC  568 (666)
Q Consensus       560 eIE~~l~~~  568 (666)
                      +||+++.+.
T Consensus       439 ~v~~al~~a  447 (581)
T 4eql_A          439 DLFKAVSQA  447 (581)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            999999643

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.86  E-value=1.1e-07  Score=103.05  Aligned_cols=131  Identities=12%  Similarity=0.145  Sum_probs=83.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHh-CCccc-cCcccchhhhhhhccCCCCCCCCCccC-CccC-cEEEEEecCCCC-----
Q 005991          413 VRFMGSGASPLSPDVMDFLKVCF-GCQVM-EGYGMTETSCIISAIDKGDNLSGHVGS-PNPA-CEIKLVDVPEMN-----  483 (666)
Q Consensus       413 lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~ivd~~~~~-----  483 (666)
                      +..++.||.   ..-...++..+ +.+++ ..|++||+..  ..+......++..+. .+|+ .-+..++.++..     
T Consensus       307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~--gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~  381 (609)
T 4b2g_A          307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYF--GLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSR  381 (609)
T ss_dssp             EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEE--EECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCS
T ss_pred             EEEEccCCh---HHHHHHHHHHcCCCccccCcccccceee--eeecCCCCCcccCceeecCCcEEEEEEecccccccccc
Confidence            556666773   33334455444 66766 8999999632  222211111222222 2333 334455543320     


Q ss_pred             -------CCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEec----CCcEEEEccCCCeEEcCC
Q 005991          484 -------YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP----GGRLKIIDRKKNIFKLAQ  552 (666)
Q Consensus       484 -------~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~GR~~d~ikl~~  552 (666)
                             .+.+.+.|..+||.|+..   .|.|+              |++||+++++.    ...+.|+||.+++|.+ .
T Consensus       382 ~~~~~~v~l~eVe~G~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~  443 (609)
T 4b2g_A          382 DSPPRLVDLAHVEVGKEYELVITTY---AGLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D  443 (609)
T ss_dssp             SSCCCCEEGGGCCTTCEEEEEEECT---TSCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred             CCCCccccHhHcCCCCeEEEehhhh---hhhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence                   022334456899999764   35554              99999999974    4689999999999997 8


Q ss_pred             eeeeccHHHHHHHh
Q 005991          553 GEYVAPEKIENVYA  566 (666)
Q Consensus       553 G~~v~p~eIE~~l~  566 (666)
                      |++|.+.+||+++.
T Consensus       444 Geki~~~~v~~av~  457 (609)
T 4b2g_A          444 SDKTDEAELQKAVD  457 (609)
T ss_dssp             SCCBCHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHH
Confidence            99999999999996

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.72  E-value=3.4e-07  Score=98.76  Aligned_cols=147  Identities=16%  Similarity=0.121  Sum_probs=88.5

Q ss_pred             CceE---EEEecCCCCcHHHHHHHHHHh-CCccc-cCcccchhhhhhhccCCCCCCCCCccC-CccC-cEEEEEecCCCC
Q 005991          411 GRVR---FMGSGASPLSPDVMDFLKVCF-GCQVM-EGYGMTETSCIISAIDKGDNLSGHVGS-PNPA-CEIKLVDVPEMN  483 (666)
Q Consensus       411 ~~lr---~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~ivd~~~~~  483 (666)
                      ++++   .++.|+.   ..-...++..+ +.++. ..|++||+.  ...+......++..+. .+|+ .-+..+..++.+
T Consensus       302 Pnl~~i~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~  376 (581)
T 4epl_A          302 PNAKYVYGIMTGSM---EPYVPKLRHYAGDLPLVSHDYGSSEGW--IAANVTPRLSPEEATFAVIPNLGYFEFLPVSETG  376 (581)
T ss_dssp             TTCCCEEEECSGGG---GGGHHHHHHHHTTSCEEECCEEETTEE--EEECCCTTSCTTTCCEEECTTSCEEEEEEC----
T ss_pred             CCCceEEEEeCCCh---HHHHHHHHHHcCCCccccCceecccee--eeeecCCCCCccccceeecCCcEEEEEEeccccc
Confidence            4664   4444543   23334555544 67777 999999963  2222222222222222 2333 223344433211


Q ss_pred             -------CCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecC----CcEEEEccCCCeEEcCC
Q 005991          484 -------YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG----GRLKIIDRKKNIFKLAQ  552 (666)
Q Consensus       484 -------~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~l~i~GR~~d~ikl~~  552 (666)
                             .+.+.+.|..+||.|+..+   |.|.              |++||+.++..-    ..+.|+||.++++.+ .
T Consensus       377 ~~~~~~v~l~eve~G~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~  438 (581)
T 4epl_A          377 EGEEKPVGLTQVKIGEEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-N  438 (581)
T ss_dssp             ---CCCEEGGGCCTTCEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred             CCCCceeeHHHcCCCCeEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-e
Confidence                   1233445568999998753   4332              999999999742    479999999999998 7


Q ss_pred             eeeeccHHHHHHHhc------Cc--CcceEEEEEeC
Q 005991          553 GEYVAPEKIENVYAK------CK--FVLQCFIYGDS  580 (666)
Q Consensus       553 G~~v~p~eIE~~l~~------~p--~V~~~~V~g~~  580 (666)
                      |+++++.+||+++.+      ..  .|.+-.++.+.
T Consensus       439 Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~  474 (581)
T 4epl_A          439 IDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDV  474 (581)
T ss_dssp             SCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEEC
T ss_pred             eeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCC
Confidence            999999999999953      22  36666666543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=92.95  E-value=1.5  Score=45.95  Aligned_cols=123  Identities=11%  Similarity=0.054  Sum_probs=89.9

Q ss_pred             CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEe
Q 005991           92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR--PEWLIVDHACSAYSYISVP  167 (666)
Q Consensus        92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~vp  167 (666)
                      .++.++.+..  ..|+++.  ...+|.+.+...+..++..+...|+.++|++...++-+  ...+...++++..|+..++
T Consensus        88 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  165 (437)
T 2y27_A           88 PQDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP  165 (437)
T ss_dssp             CGGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred             ChhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence            3456665443  2455553  35689999988888888888889999999999888853  3344567888999999987


Q ss_pred             cCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhc------CCCceEEEEeCC
Q 005991          168 LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISE------IPSVHLIVVVGG  217 (666)
Q Consensus       168 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~------~~~l~~ii~~~~  217 (666)
                      +.. ..++.+...+++.++.+++..+.....+.+....      .+.++.+++-++
T Consensus       166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe  220 (437)
T 2y27_A          166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE  220 (437)
T ss_dssp             CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred             CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence            765 4788999999999999999998877766554321      246676666443

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=92.76  E-value=1.6  Score=45.71  Aligned_cols=122  Identities=11%  Similarity=0.060  Sum_probs=89.4

Q ss_pred             CCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEec
Q 005991           93 PDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR--PEWLIVDHACSAYSYISVPL  168 (666)
Q Consensus        93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~vpl  168 (666)
                      ++.++.+..  ..|.+|.  ...+|.+.+...+..++..+...|+.++|++...++-+  ...+...++++..|+..+++
T Consensus        91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~  168 (443)
T 2y4o_A           91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM  168 (443)
T ss_dssp             GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred             hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence            455554433  1565554  34679999988888888888889999999999988863  34445678888999998887


Q ss_pred             CCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhh------cCCCceEEEEeCC
Q 005991          169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS------EIPSVHLIVVVGG  217 (666)
Q Consensus       169 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~  217 (666)
                      ... .++.+...+++.++.+++..+.....+.+...      ..+.++.+++-++
T Consensus       169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe  222 (443)
T 2y4o_A          169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE  222 (443)
T ss_dssp             CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred             CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence            664 78899999999999999999887766655332      1256776666443

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=91.67  E-value=1.5  Score=45.87  Aligned_cols=121  Identities=12%  Similarity=0.059  Sum_probs=90.2

Q ss_pred             CCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEecC
Q 005991           94 DYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR--PEWLIVDHACSAYSYISVPLY  169 (666)
Q Consensus        94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~vpl~  169 (666)
                      +.+|++..  ..|++|.  ...+|.+.+...+..++..+...|+.++|++..+++-+  ...+..+++++..|+..++.+
T Consensus        86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~  163 (436)
T 3qov_A           86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA  163 (436)
T ss_dssp             HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred             CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence            45565443  2455553  45689999999898898889889999999999988753  445557788899999988876


Q ss_pred             CCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhc------CCCceEEEEeCC
Q 005991          170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISE------IPSVHLIVVVGG  217 (666)
Q Consensus       170 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~------~~~l~~ii~~~~  217 (666)
                      .. .++.+...+++.++.+++..+.....+.+....      ++.++.+++-++
T Consensus       164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe  216 (436)
T 3qov_A          164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE  216 (436)
T ss_dssp             SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred             CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence            54 678899999999999999998877766554321      456777766543

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=82.17  E-value=26  Score=37.46  Aligned_cols=120  Identities=12%  Similarity=-0.043  Sum_probs=85.3

Q ss_pred             CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH--HH-HHHHHHhcCCeEE
Q 005991           92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW--LI-VDHACSAYSYISV  166 (666)
Q Consensus        92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~--~~-~~lA~~~~G~~~v  166 (666)
                      .|+.+|++..  ..|.+|.  ...+|.+.+...+......   .++.++|++...+|-...+  .. .+++++..|+..+
T Consensus       180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v  254 (539)
T 1mdb_A          180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV  254 (539)
T ss_dssp             CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred             CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence            4677777654  2454443  4578999887776655543   4788999998888866433  33 5788899999988


Q ss_pred             ecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhh----cCCCceEEEEeCC
Q 005991          167 PLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS----EIPSVHLIVVVGG  217 (666)
Q Consensus       167 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~l~~ii~~~~  217 (666)
                      ..+ ...++.+...+++.++.+++..+.....+.+...    .++.++.+++-++
T Consensus       255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~  308 (539)
T 1mdb_A          255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA  308 (539)
T ss_dssp             ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred             ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence            765 4678899999999999999998887766654322    4567777776544

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=80.09  E-value=30  Score=36.39  Aligned_cols=118  Identities=16%  Similarity=0.013  Sum_probs=83.2

Q ss_pred             CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHh-HHHHHHHHHhcCCeEEec
Q 005991           92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE-WLIVDHACSAYSYISVPL  168 (666)
Q Consensus        92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e-~~~~~lA~~~~G~~~vpl  168 (666)
                      .|+.+|++..  ..|.+|.  ...+|.+.+...+..+..   ..++.++|++..++|-... -+..+++++..|+..+..
T Consensus       161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~  235 (501)
T 3ipl_A          161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV  235 (501)
T ss_dssp             CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred             CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence            4677777654  2455443  356899988877666554   4588999999988886533 233467788899988876


Q ss_pred             CCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhc-CCCceEEEEe
Q 005991          169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISE-IPSVHLIVVV  215 (666)
Q Consensus       169 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~l~~ii~~  215 (666)
                      + ...++.+...+++.++.+++..+.....+.+.... ...++.+++-
T Consensus       236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~g  282 (501)
T 3ipl_A          236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLG  282 (501)
T ss_dssp             S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEEC
T ss_pred             C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEe
Confidence            5 47889999999999999999998877776654322 1246655553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	666
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	1e-75
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	1e-69
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-67
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	7e-62
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-47
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	2e-45
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	2e-45

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  253 bits (646), Expect = 1e-75
 Identities = 84/573 (14%), Positives = 174/573 (30%), Gaps = 100/573 (17%)

Query: 72  FPDHPEIGTLHDNFIY-----AVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEI 126
           + D    GTL  N         ++   D   +   +         K ++Y E+       
Sbjct: 66  YED----GTL--NLAANCLDRHLQENGDRTAI---IWEGDDTSQSKHISYRELHRDVCRF 116

Query: 127 GSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEI 186
            + LL  G++KG  + +Y+   PE  +   AC+    +   ++    P+AV   +  +  
Sbjct: 117 ANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSS 176

Query: 187 EAIFCIPQTLNTLLSFI-----------SEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235
             +    + +    S               + SV  ++V+      +             
Sbjct: 177 RLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRD-----L 231

Query: 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQF 294
           + +   +  S          ED   I YTSG+TG PKG + T G  +   A  F  +  +
Sbjct: 232 WWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY 291

Query: 295 YPSDIYMSYLPLAHIYERANQIVS-VYYGVAVGFYQG-----DNLKLMDDLAVLKPTIFP 348
           +P DIY     +  +   +  +   +  G     ++G        ++   +   +  I  
Sbjct: 292 HPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILY 351

Query: 349 SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER 408
           + P     + A                                   K  +          
Sbjct: 352 TAPTAIRALMA--------------------------------EGDKAIEGTDR------ 373

Query: 409 LGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETS--CIISAIDKGDNLSG 463
               +R +GS   P++P+  ++     G   C V++ +  TET    I       +  +G
Sbjct: 374 --SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAG 431

Query: 464 HVGSPNPACEIKLVDVPEMNYTSEDQPHP---RGEICVRGPI--VFQGYYKNEVQTRE-- 516
               P    +  LVD       +E  P      G + +        +  + +  +  +  
Sbjct: 432 SATRPFFGVQPALVD-------NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTY 484

Query: 517 VIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
                    +GD       G   I  R  ++  ++ G  +   +IE+       + +  +
Sbjct: 485 FSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAEAAV 543

Query: 577 YG---DSFNSCLVAIVAVDPDVLKDWAASQGIK 606
            G         + A V ++            ++
Sbjct: 544 VGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVR 576

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  234 bits (596), Expect = 1e-69
 Identities = 102/537 (18%), Positives = 178/537 (33%), Gaps = 83/537 (15%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
            L D    A   +   + +          G     TY EV    + +  GL   G+  G 
Sbjct: 12  NLWDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 66

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
           R+     N    L    A      +       L P  + Y++NHAE + +   P  L  +
Sbjct: 67  RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 126

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
            +   E+ +V   VV+  K                       +                 
Sbjct: 127 EAIRGELKTVQHFVVMDEKAPE--------------GYLAYEEALGEEADPVRVPERAAC 172

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFS--LMVQFYPSDIYMSYLPLAHIYERANQIV 317
            + YT+GTTG PKG V +H  L+ +    S          D+ +  +P+ H+        
Sbjct: 173 GMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA 232

Query: 318 SVYYGVAVGFY--QGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKL 375
           +   G        + D   L++       T    VP ++  +                  
Sbjct: 233 ATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLAL------------------ 274

Query: 376 FTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF 435
                                     + +        +R +  G S     ++   +   
Sbjct: 275 ------------------------ADYLESTGHRLKTLRRLVVGGSAAPRSLIARFER-M 309

Query: 436 GCQVMEGYGMTETSCIIS-----------AIDKGDNLSGHVGSPNPACEIKLVDVPEMNY 484
           G +V +GYG+TETS ++            + ++   L    G P P   +++ D  E   
Sbjct: 310 GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRP 368

Query: 485 TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK 544
             +D     GE+ ++GP +  GYY NE  TR  +  DG+  TGDI +W   G ++I DR 
Sbjct: 369 VPKDGKAL-GEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRL 427

Query: 545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDPDVLKD 598
           K++ K   GE+++   +EN       V +  +       +    +A+V    +    
Sbjct: 428 KDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTP 483

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  228 bits (581), Expect = 2e-67
 Identities = 117/545 (21%), Positives = 192/545 (35%), Gaps = 66/545 (12%)

Query: 73  PDHP-EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL 131
           P +P E GT  +    A++ Y         +            TY E       +   + 
Sbjct: 10  PFYPLEDGTAGEQLHKAMKRYALVP---GTIAFTDAHIEVNI-TYAEYFEMSVRLAEAMK 65

Query: 132 FHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC 191
            +GL    RI +   N  ++ +             P  D      +   +N ++   +F 
Sbjct: 66  RYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 125

Query: 192 IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFC 251
             + L  +L+   ++P +  I+++  K ++       S    ++             P  
Sbjct: 126 SKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGF---QSMYTFVTSHLPPGFNEYDFVPES 182

Query: 252 PPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSDIYMSYLPLAH 308
             + + IA I  +SG+TG PKG  L H       +     +   Q  P    +S +P  H
Sbjct: 183 FDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242

Query: 309 IYERANQIVSVYYGVA-VGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKA 367
            +     +  +  G   V  Y+ +    +  L   K      VP L++            
Sbjct: 243 GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA--------- 293

Query: 368 SGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDV 427
               +  L      S    I SG                            GA       
Sbjct: 294 ----KSTLIDKYDLSNLHEIASG----------------------------GAPLSKEVG 321

Query: 428 MDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSE 487
               K      + +GYG+TET+  I    +GD+  G VG   P  E K+VD+        
Sbjct: 322 EAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV 381

Query: 488 DQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNI 547
           +Q    GE+CVRGP++  GY  N   T  +ID DGWLH+GDI  W       I+DR K++
Sbjct: 382 NQR---GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSL 438

Query: 548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIV------AVDPDVLKD 598
            K   G  VAP ++E++  +   +    + G   D       A+V       +    + D
Sbjct: 439 IKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVD 497

Query: 599 WAASQ 603
           + ASQ
Sbjct: 498 YVASQ 502

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  215 bits (548), Expect = 7e-62
 Identities = 89/566 (15%), Positives = 183/566 (32%), Gaps = 79/566 (13%)

Query: 72  FPDHPEIGTLHDNFIY-----AVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEI 126
           F +    G L  N  Y          P+ K +   +      G    +TY E+     ++
Sbjct: 53  FLN----GQL--NACYNCVDRHALKTPNKKAI---IFEGDEPGQGYSITYKELLEEVCQV 103

Query: 127 GSGLLF-HGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAE 185
              L +  G++KG  + +Y+   PE +I   A S    I   ++     ++++  +N  +
Sbjct: 104 AQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGD 163

Query: 186 IEAIFC---------IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY 236
            + +           + +T   +   + E P V  ++V    +    +  +         
Sbjct: 164 SKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPR----DLD 219

Query: 237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV-QFY 295
              + +   +  P  P   ED   + YTSG+TG PKG   +    +             +
Sbjct: 220 WATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTH 279

Query: 296 PSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYN 355
             D++ +   +  I           Y V      G    + +         +P+  R ++
Sbjct: 280 QEDVFFTAGDIGWIT-------GHTYVVYGPLLYGCATLVFE-----GTPAYPNYSRYWD 327

Query: 356 RIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRF 415
            I          + T    L  A  +  +   +                        +R 
Sbjct: 328 IIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLK----------------------SLRC 365

Query: 416 MGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISAIDKGDNL---SGHVGSPN 469
           +GS   P++ +V ++     G     +++ Y  TE+   +     G       G    P 
Sbjct: 366 LGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPF 425

Query: 470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVI--DGDGWLH 525
              +  ++D       +    H  G + V+   P   +  +KN  +  +       G+  
Sbjct: 426 FGIDAVVLDPNTGEELNT--SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYF 483

Query: 526 TGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFN 582
           TGD       G + I+ R  ++  +  G  ++  +IE    +   V +C + G   D   
Sbjct: 484 TGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTG 542

Query: 583 SCLVAIVAVDPDVLKDWAASQGIKVI 608
             + A V +        A    ++ I
Sbjct: 543 QAVAAFVVLKNKSSWSTATDDELQDI 568

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  173 bits (438), Expect = 1e-47
 Identities = 83/544 (15%), Positives = 172/544 (31%), Gaps = 95/544 (17%)

Query: 73  PDHPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLF 132
            ++P   T+H  F   V   P+       V +   V   + +TY E++    ++    + 
Sbjct: 17  AEYPRDKTIHQLFEEQVSKRPN------NVAI---VCENEQLTYHELNVKANQLARIFIE 67

Query: 133 HGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCI 192
            G+ K   +G+ +    +  I   A        VP+      + ++Y+++ ++   +   
Sbjct: 68  KGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQ 127

Query: 193 PQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCP 252
              ++ L+  I     V +      K     +L                          P
Sbjct: 128 KHLVH-LIHNIQFNGQVEIFEEDTIKIREGTNLH------------------------VP 162

Query: 253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER 312
            K  D+A + YTSGTTG PKG +L H  + +    F   +     D    +  ++     
Sbjct: 163 SKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASV 222

Query: 313 ANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLR 372
               +++  G ++                          +                    
Sbjct: 223 WEMFMALLTGASLYIIL--------------KDTINDFVKFE------------------ 250

Query: 373 EKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK 432
                       Q I   +             +       ++ + +  S  SP +++  K
Sbjct: 251 ------------QYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVN--K 296

Query: 433 VCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHP 492
                  +  YG TET+   +         GH        +   + + + N         
Sbjct: 297 WKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQ-LKSVGE 355

Query: 493 RGEICVRGPIVFQGYYKNEVQTREVI------DGDGWLHTGDIGLWLPGGRLKIIDRKKN 546
            GE+C+ G  + +GY+K    T +         G+    TGD   WL  G ++ + R  N
Sbjct: 356 AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDN 415

Query: 547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIV----AVDPDVLKDW 599
             K+  G  V  E++E++  K  ++ +  +           L A       +  + L+ +
Sbjct: 416 QVKIR-GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQF 474

Query: 600 AASQ 603
           ++ +
Sbjct: 475 SSEE 478

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  167 bits (424), Expect = 2e-45
 Identities = 97/540 (17%), Positives = 165/540 (30%), Gaps = 82/540 (15%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T  D        Y D   +           G    +Y E+      + +G    G+Q+  
Sbjct: 26  TFGDLLRDRAAKYGDRIAI---------TCGNTHWSYRELDTRADRLAAGFQKLGIQQKD 76

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
           R+ + L N  E+  V  A      + V    +     + Y    AE  A           
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136

Query: 200 L-----SFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPK 254
                    S++P++  I+V G  +E LP                     + P      K
Sbjct: 137 YRSLARQVQSKLPTLKNIIVAGEAEEFLP----------------LEDLHTEPVKLPEVK 180

Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314
             D+A +  + G+TG  K    TH + I ++     +     S +Y++ LP+AH Y  ++
Sbjct: 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSS 240

Query: 315 QIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREK 374
                                               P +   +YAG    +  S +  + 
Sbjct: 241 ------------------------------------PGVLGVLYAGGRVVLSPSPSPDDA 264

Query: 375 LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC 434
                        +         D     +        ++ +  G +  S +    +K  
Sbjct: 265 FPLIEREKVTITALVPPLAMVWMDAASSRRDDLS---SLQVLQVGGAKFSAEAARRVKAV 321

Query: 435 FGCQVMEGYGMTE-TSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
           FGC + + +GM E         D  + +    G P    +   V         + +P   
Sbjct: 322 FGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDR---DVKPGET 378

Query: 494 GEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG 553
           G +  RGP   +GYYK E         DG+  TGDI      G + +  R K+      G
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRG-G 437

Query: 554 EYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIV-----AVDPDVLKDWAASQGI 605
           E VA E++EN       V    +               +     A     LK +   +G+
Sbjct: 438 EKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGL 497

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  166 bits (421), Expect = 2e-45
 Identities = 90/539 (16%), Positives = 155/539 (28%), Gaps = 84/539 (15%)

Query: 80  TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGV 139
           T+++    A    PD+  L   V   G       +T+ E+ A  + + + L   GL+   
Sbjct: 3   TVNEMLRRAATRAPDHCAL--AVPARG-----LRLTHAELRARVEAVAARLHADGLRPQQ 55

Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTL 199
           R+ +   N  + +I   A      +   L   L    +  ++   E+ A          +
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR--QV 113

Query: 200 LSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIA 259
              I +  S   I+ +G                              P      +P   A
Sbjct: 114 ADAIFQSGSGARIIFLGDLVRDGEPYSY-----------------GPPIEDPQREPAQPA 156

Query: 260 TICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSV 319
            I YTSGTTG PK A++      S V   S  V        +    +   +      V V
Sbjct: 157 FIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLV 216

Query: 320 YYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA 379
                 G Y         D   L      +           +  A   +G          
Sbjct: 217 AALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------- 266

Query: 380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQV 439
                                            +R +    + +   V++ +      + 
Sbjct: 267 --------------------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEK 300

Query: 440 MEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGE---- 495
           +  YG TE    +             G  +    +++           D+    GE    
Sbjct: 301 VNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGG-------VDEIVANGEEGEL 353

Query: 496 ICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY 555
           I       F GY      T E +  DGW  T D+ +W P G ++I+ R  ++     GE 
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIIS-GGEN 411

Query: 556 VAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIV------AVDPDVLKDWAASQGI 605
           + P +IE V      V +  + G     +   + A V       +  D L  +  S  +
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSEL 470

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	666
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.1e-76  Score=667.59  Aligned_cols=505  Identities=16%  Similarity=0.238  Sum_probs=415.6

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      .+-...+++++++.+||++|+++.   ..+.++.+++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus        71 ~N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA  147 (643)
T d1pg4a_          71 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA  147 (643)
T ss_dssp             ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHH
Confidence            344567888889999999999886   33345678899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEcccc---------HHHHHHhhh--cCCCceEEEEeCCCCCCCCCCC
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFIS--EIPSVHLIVVVGGKDEHLPSLP  226 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~--~~~~l~~ii~~~~~~~~~~~~~  226 (666)
                      |+++|++++|+++.++++++.+++++++++++|+++..         ...+...+.  ..+.+..++.+.........  
T Consensus       148 ~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~--  225 (643)
T d1pg4a_         148 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW--  225 (643)
T ss_dssp             HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC--
T ss_pred             HHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccccc--
Confidence            99999999999999999999999999999999997642         223333322  35667788877654322111  


Q ss_pred             CCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHh-hcccccccCCCcEEEEcCC
Q 005991          227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSYLP  305 (666)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~p  305 (666)
                        .......+.+....... .......+++|+++|+|||||||.||||++||++++.... .....+++.++|++++.+|
T Consensus       226 --~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p  302 (643)
T d1pg4a_         226 --QEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTAD  302 (643)
T ss_dssp             --CBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred             --ccccchhhhhhhcccCc-ccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCC
Confidence              11122344444443322 2334456789999999999999999999999999765544 3445578899999999999


Q ss_pred             hHHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 005991          306 LAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA  379 (666)
Q Consensus       306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~  379 (666)
                      ++|++++.. ++.+|+.|+++++++     .++..+++.++++++|++.++|+++..|++.......             
T Consensus       303 ~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~-------------  369 (643)
T d1pg4a_         303 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE-------------  369 (643)
T ss_dssp             TTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTT-------------
T ss_pred             hHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhcc-------------
Confidence            999999876 567899999999976     3789999999999999999999999988653111100             


Q ss_pred             HHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC---CccccCcccchhhhhhhccC
Q 005991          380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISAID  456 (666)
Q Consensus       380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~~~  456 (666)
                                                 ....++||.+++||+++++++.+++.+.++   +++++.||+||+++.++...
T Consensus       370 ---------------------------~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~  422 (643)
T d1pg4a_         370 ---------------------------GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL  422 (643)
T ss_dssp             ---------------------------TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCC
T ss_pred             ---------------------------ccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecC
Confidence                                       000148999999999999999999998874   77999999999987666544


Q ss_pred             CC--CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeC--CCcCccccCChhhhhhcc--CCCCeeecccEE
Q 005991          457 KG--DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVI--DGDGWLHTGDIG  530 (666)
Q Consensus       457 ~~--~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~--~~~gw~~TGDlg  530 (666)
                      +.  ..+.+++|+|++|++++|+| ++++.++.++   .|||+|+|  |+++.|||++++.+.+.+  ..+|||+|||+|
T Consensus       423 ~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~---~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~  498 (643)
T d1pg4a_         423 PGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGA  498 (643)
T ss_dssp             TTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEE
T ss_pred             CCccCCCCCccccccCCCEEEEEC-CCCCCCCCCc---eEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEE
Confidence            43  35678999999999999999 5666666554   89999999  578999999999888765  458999999999


Q ss_pred             EEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------hHHHH
Q 005991          531 LWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------DVLKD  598 (666)
Q Consensus       531 ~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~  598 (666)
                      ++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++   +.++|+|++++         .++++
T Consensus       499 ~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~  577 (643)
T d1pg4a_         499 RRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRN  577 (643)
T ss_dssp             EECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             EECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHHHHHHHHH
Confidence            99999999999999999997 8999999999999999999999999997653   58999999743         36889


Q ss_pred             HHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccch
Q 005991          599 WAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSR  641 (666)
Q Consensus       599 ~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~  641 (666)
                      +++++ |+     .|++|+.|++++ +|++.+||++|++|++..
T Consensus       578 ~~~~~-L~-----~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~  615 (643)
T d1pg4a_         578 WVRKE-IG-----PLATPDVLHWTDSLPKTRSGKIMRRILRKIA  615 (643)
T ss_dssp             HHHHH-TC-----GGGCCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHhh-CC-----cccCccEEEEECCCCCCCCcCccHHHHHHHh
Confidence            99998 88     999999999995 889999999999999873

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=9.5e-75  Score=641.65  Aligned_cols=495  Identities=21%  Similarity=0.290  Sum_probs=389.5

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH  156 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  156 (666)
                      ...||+++|+++++++||++|+++.   +  .++.+++||+||+++++++|++|.+.|+++||+|+|+++|+++|++++|
T Consensus         9 ~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   83 (534)
T d1v25a_           9 EELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF   83 (534)
T ss_dssp             CCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHH
Confidence            3458999999999999999999875   2  3456789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991          157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY  236 (666)
Q Consensus       157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  236 (666)
                      ||+++|++++|+++.++.+++.++|+++++++++++.............++.++.++.........          ....
T Consensus        84 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~  153 (534)
T d1v25a_          84 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEG----------YLAY  153 (534)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTT----------CEEH
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccc----------cccc
Confidence            999999999999999999999999999999999999999998888888888888877765432110          0111


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhc--ccccccCCCcEEEEcCChHHHHHHHH
Q 005991          237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF--SLMVQFYPSDIYMSYLPLAHIYERAN  314 (666)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (666)
                      ... .   ....+.....++++++|+|||||||.||||+++|++++..+...  ...+.....|++++.+|++|.+++..
T Consensus       154 ~~~-~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~  229 (534)
T d1v25a_         154 EEA-L---GEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL  229 (534)
T ss_dssp             HHH-C---CSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTH
T ss_pred             ccc-c---cccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccc
Confidence            111 1   11223345678899999999999999999999999998665433  33356788999999999999999999


Q ss_pred             HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991          315 QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT  392 (666)
Q Consensus       315 ~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~  392 (666)
                      .+..+..|+++++..  .++..+...+.++++|++.++|.++..+........                           
T Consensus       230 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~---------------------------  282 (534)
T d1v25a_         230 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG---------------------------  282 (534)
T ss_dssp             HHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT---------------------------
T ss_pred             cceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccc---------------------------
Confidence            888888888888765  799999999999999999999999998876422211                           


Q ss_pred             CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC-----------CC
Q 005991          393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-----------NL  461 (666)
Q Consensus       393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----------~~  461 (666)
                                     ...+++|.+++||++++++..+++++ ++.+++++||+||++..++......           ..
T Consensus       283 ---------------~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~  346 (534)
T d1v25a_         283 ---------------HRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTL  346 (534)
T ss_dssp             ---------------CCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHH
T ss_pred             ---------------ccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCccccccCccccccc
Confidence                           11258999999999999999999886 6999999999999998776543322           13


Q ss_pred             CCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEE
Q 005991          462 SGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII  541 (666)
Q Consensus       462 ~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~  541 (666)
                      .+++|+|+||++++|+| ++++.++.+. ++.|||+|+|++++.|||++++.|++.|..||||+|||+|++++||+|+++
T Consensus       347 ~~~~G~p~~g~~~~i~d-~~~~~~~~~~-~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~  424 (534)
T d1v25a_         347 KAKTGLPIPLVRLRVAD-EEGRPVPKDG-KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIK  424 (534)
T ss_dssp             HTSCBEECTTCEEEEEC-TTSCBCCSSS-CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEE
T ss_pred             cccceeccCCcEEEEEC-CCCCCCCCCC-CeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEe
Confidence            46899999999999999 5566555432 248999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh------hHHHHHHHHcCCCcccccc
Q 005991          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP------DVLKDWAASQGIKVIYCFS  612 (666)
Q Consensus       542 GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------~~l~~~~~~~~l~~~~~~~  612 (666)
                      ||+||+||+ +|++|+|.|||++|.+||+|.||+|++.+++   +.++|+|+++.      +.++.+++++ |+     .
T Consensus       425 GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~-l~-----~  497 (534)
T d1v25a_         425 DRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAG-FA-----K  497 (534)
T ss_dssp             EESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------C-CC-----T
T ss_pred             cccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCCHHHHHHHHHHhc-CC-----c
Confidence            999999997 8999999999999999999999999987653   57899998743      2344456666 87     8


Q ss_pred             cccCcchhHHH-HHHHHhhhhhhhhhccchh
Q 005991          613 FRANSHVIFIA-LIHNLCQLYSSKELFRSRC  642 (666)
Q Consensus       613 ~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~~  642 (666)
                      |++|+.|++++ +|++.+||++|++||+.-.
T Consensus       498 ~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~  528 (534)
T d1v25a_         498 WQLPDAYVFAEEIPRTSAGKFLKRALREQYK  528 (534)
T ss_dssp             TTSCSBC--------------CCTTHHHHST
T ss_pred             CCCccEEEEECCCCCCCCccccHHHHHHHHH
Confidence            99999999995 8889999999999998744

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-75  Score=658.01  Aligned_cols=508  Identities=17%  Similarity=0.209  Sum_probs=411.5

Q ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCCHhHHHHH
Q 005991           77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL-FHGLQKGVRIGLYLINRPEWLIVD  155 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~e~~~~~  155 (666)
                      ..+..+++|+++|+++||++|+++.   ..+.+..+++||+||.++++++|++|+ ++|+++||+|+|+++|+++|++++
T Consensus        57 ~lN~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~  133 (640)
T d1ry2a_          57 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL  133 (640)
T ss_dssp             EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred             chhHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence            3455689999999999999999986   434456788999999999999999997 679999999999999999999999


Q ss_pred             HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEcccc---------HHHHHHhhhcCCCceEEEEeCCCCCCCCCCC
Q 005991          156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQT---------LNTLLSFISEIPSVHLIVVVGGKDEHLPSLP  226 (666)
Q Consensus       156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~  226 (666)
                      |||+++|++++|+++.++++++.++++++++++++++...         ...+.......+.+................ 
T Consensus       134 lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  212 (640)
T d1ry2a_         134 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF-  212 (640)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-
T ss_pred             HHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccc-
Confidence            9999999999999999999999999999999999998642         333444444555666655554432211111 


Q ss_pred             CCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcc-cccccCCCcEEEEcCC
Q 005991          227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS-LMVQFYPSDIYMSYLP  305 (666)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~d~~l~~~p  305 (666)
                        .......+....... .......+..++|+++|+|||||||.||||+++|++++....... ..+.+.++|++++++|
T Consensus       213 --~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~p  289 (640)
T d1ry2a_         213 --HAPRDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGD  289 (640)
T ss_dssp             --CSSSEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSC
T ss_pred             --ccccccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccc
Confidence              111122333332222 223344556789999999999999999999999999877654443 3467889999999999


Q ss_pred             hHHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 005991          306 LAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA  379 (666)
Q Consensus       306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~  379 (666)
                      ++|+++... ++.+|..|+++++++     .++..+++.|+++++|++.++|+++..|.+.....               
T Consensus       290 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------  354 (640)
T d1ry2a_         290 IGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY---------------  354 (640)
T ss_dssp             TTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS---------------
T ss_pred             hhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccc---------------
Confidence            999999776 667899999998876     37899999999999999999999998775421000               


Q ss_pred             HHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC---CccccCcccchhhhhhhccC
Q 005991          380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISAID  456 (666)
Q Consensus       380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~~~  456 (666)
                                    ...++           .++||.+++||+++++++.+++.+.+|   +.++++||+||++..++...
T Consensus       355 --------------~~~~~-----------l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~  409 (640)
T d1ry2a_         355 --------------IENHS-----------LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPL  409 (640)
T ss_dssp             --------------SSSCC-----------CTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECC
T ss_pred             --------------cccCC-----------CCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeeccccccccccccc
Confidence                          00000           158999999999999999999999886   46899999999987665544


Q ss_pred             CCC---CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeC--CCcCccccCChhhhhhcc--CCCCeeecccE
Q 005991          457 KGD---NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVI--DGDGWLHTGDI  529 (666)
Q Consensus       457 ~~~---~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~--~~~gw~~TGDl  529 (666)
                      ...   .+.+++|+|++|++++|+|.+++.......  ..|||+++|  |+++.|||++++.|.+.|  +.+|||+|||+
T Consensus       410 ~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~--~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDl  487 (640)
T d1ry2a_         410 AGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDG  487 (640)
T ss_dssp             TTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEE
T ss_pred             CCCcCCCCCcccccccCCceEEEEeCCCCcccCCCC--ceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCc
Confidence            332   567899999999999999955544333332  379999998  689999999999999987  45699999999


Q ss_pred             EEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh-------------
Q 005991          530 GLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP-------------  593 (666)
Q Consensus       530 g~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------------  593 (666)
                      |++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++   +.++|+|++.+             
T Consensus       488 g~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~  566 (640)
T d1ry2a_         488 AAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQ  566 (640)
T ss_dssp             EEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CC
T ss_pred             eeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccchHHHH
Confidence            999999999999999999996 8999999999999999999999999997654   67999998754             


Q ss_pred             ---hHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          594 ---DVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       594 ---~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                         +++.++++++ |+     .|++|+.|++++ +|+|.+||++|++||+.
T Consensus       567 ~l~~~l~~~~~~~-L~-----~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~  611 (640)
T d1ry2a_         567 DIKKHLVFTVRKD-IG-----PFAAPKLIILVDDLPKTRSGKIMRRILRKI  611 (640)
T ss_dssp             SHHHHHHHHHHHH-TC-----TTTSCSEEEECSCCCBCTTSCBCHHHHHHS
T ss_pred             HHHHHHHHHHHhh-CC-----CCCCceEEEEeCCCCCCCCcCccHHHHHHH
Confidence               3477788888 88     999999999995 88899999999999887

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=2.6e-73  Score=630.94  Aligned_cols=497  Identities=24%  Similarity=0.339  Sum_probs=404.1

Q ss_pred             CCCCHHHHHHHHHHhC---CCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHH
Q 005991           77 EIGTLHDNFIYAVENY---PDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI  153 (666)
Q Consensus        77 ~~~tl~~~~~~~a~~~---pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~  153 (666)
                      +..|+.++|.+.++++   |+.+|+.+.       ...+.+||+||++++.++|++|+++|+++||+|+|+++|+++|++
T Consensus        15 ~~~t~~~~l~~~~~~~~~~P~~~a~~d~-------~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v   87 (541)
T d1lcia_          15 EDGTAGEQLHKAMKRYALVPGTIAFTDA-------HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFM   87 (541)
T ss_dssp             CSSCHHHHHHHHHHHHHTSTTCEEEEET-------TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHH
T ss_pred             CCCCHHHHHHHHHHhhCCCCCeEEEEeC-------CCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHH
Confidence            3469999999999998   444555432       123569999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEE
Q 005991          154 VDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL  233 (666)
Q Consensus       154 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~  233 (666)
                      +++||+++|++++|+++.++.+++.++|++++++++|++.+..+.+.+....++..+.+++++.....       .+  .
T Consensus        88 ~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~  158 (541)
T d1lcia_          88 PVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-------QG--F  158 (541)
T ss_dssp             HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB-------TT--B
T ss_pred             HHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccc-------cc--c
Confidence            99999999999999999999999999999999999999999999999999999999999887654321       11  1


Q ss_pred             EehHHHHhcC------CCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc---cccCCCcEEEEcC
Q 005991          234 ISYLQLQSQG------CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYL  304 (666)
Q Consensus       234 ~~~~~~~~~~------~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~  304 (666)
                      .++.+.....      .....+.....++++++|+|||||||.||||++||++++.........   ..+.+++++++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (541)
T d1lcia_         159 QSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVV  238 (541)
T ss_dssp             EEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECS
T ss_pred             chhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccc
Confidence            2333322211      111123334567899999999999999999999999998766655443   4577899999999


Q ss_pred             ChHHHHHHHHHHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 005991          305 PLAHIYERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSK  383 (666)
Q Consensus       305 pl~h~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k  383 (666)
                      |++|.++....+..+..|+..++.. .+.......+..+++|.+..+|.++..+.......                   
T Consensus       239 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~-------------------  299 (541)
T d1lcia_         239 PFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID-------------------  299 (541)
T ss_dssp             CTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGG-------------------
T ss_pred             cccccccccccccccccccccccccccccchhHHHHhhhhccccccCcccccccccccccc-------------------
Confidence            9999999998888888888887766 78999999999999999999999998876521100                   


Q ss_pred             HHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCC-ccccCcccchhhhhhhccCCCCCCC
Q 005991          384 KQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGC-QVMEGYGMTETSCIISAIDKGDNLS  462 (666)
Q Consensus       384 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~~~  462 (666)
                                  .           ....+++.+++||+++++...+++.+.++. .++++||+||+++.++.........
T Consensus       300 ------------~-----------~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~  356 (541)
T d1lcia_         300 ------------K-----------YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKP  356 (541)
T ss_dssp             ------------G-----------SCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---C
T ss_pred             ------------c-----------cccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccCCC
Confidence                        0           011489999999999999999999988864 6889999999999888887777888


Q ss_pred             CCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 005991          463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID  542 (666)
Q Consensus       463 ~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G  542 (666)
                      +++|+|+||++++|+|.+++..++.++   .|||+|+|++++.||+++++.+...+..+|||+|||+|++++||.++++|
T Consensus       357 ~svG~p~~~~~~~i~d~d~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~G  433 (541)
T d1lcia_         357 GAVGKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVD  433 (541)
T ss_dssp             CCCBEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-
T ss_pred             CccccccCCCEEEEEECCCCcCCCCCC---eEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEee
Confidence            999999999999999987788777776   89999999999999999999999999899999999999999999999999


Q ss_pred             cCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCccccccc
Q 005991          543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSF  613 (666)
Q Consensus       543 R~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~  613 (666)
                      |+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.      .++++++++++ +.    ..+
T Consensus       434 R~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~-l~----~~~  507 (541)
T d1lcia_         434 RLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQ-VT----TAK  507 (541)
T ss_dssp             ----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHH-SC----GGG
T ss_pred             eecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHh-CC----ccc
Confidence            99999998 8999999999999999999999999986543   5788999863      47899999998 65    134


Q ss_pred             ccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          614 RANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       614 ~~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++|+.|++++ +|++.+||++|++|++.
T Consensus       508 ~~p~~i~~v~~lP~t~~GKi~r~~l~~~  535 (541)
T d1lcia_         508 KLRGGVVFVDEVPKGLTGKLDARKIREI  535 (541)
T ss_dssp             SCTTEEEEESSCCC-----CCHHHHHHH
T ss_pred             cCCcEEEEeCCCCcCCCcCccHHHHHHH
Confidence            5899998886 88888899999999865

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=2.1e-70  Score=603.75  Aligned_cols=471  Identities=18%  Similarity=0.271  Sum_probs=397.4

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991           75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV  154 (666)
Q Consensus        75 ~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  154 (666)
                      .|+..||.++|+++|+++||++|+++.   +      +.+||+||+++++++|++|.++|+++||+|+++++|+++|+++
T Consensus        19 ~~~~~tl~~l~~~~a~~~Pd~~Al~~~---~------~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~   89 (514)
T d1amua_          19 YPRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIG   89 (514)
T ss_dssp             CCTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHH
Confidence            467789999999999999999999863   2      4699999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEE
Q 005991          155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI  234 (666)
Q Consensus       155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~  234 (666)
                      ++||+++|++++|+++.++++++.+++++++++++|++....+.+....   .... .......                
T Consensus        90 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~-~~~~~~~----------------  149 (514)
T d1amua_          90 ILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ---FNGQ-VEIFEED----------------  149 (514)
T ss_dssp             HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC---CCSE-EEECCCS----------------
T ss_pred             HHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhc---cccc-ccccccc----------------
Confidence            9999999999999999999999999999999999999988766543321   1111 1111110                


Q ss_pred             ehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH
Q 005991          235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN  314 (666)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~  314 (666)
                           ............+..++++++|+|||||||.||+|++||+++...+......+....+|++++.+|++|.+++..
T Consensus       150 -----~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~  224 (514)
T d1amua_         150 -----TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE  224 (514)
T ss_dssp             -----TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH
T ss_pred             -----cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccccc
Confidence                 011111122334567899999999999999999999999999999998888899999999999999999999999


Q ss_pred             HHHHHHhCcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005991          315 QIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (666)
Q Consensus       315 ~~~~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (666)
                      .+.++..|+++++..    .+....++.+....++.+..+|........                               
T Consensus       225 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------  273 (514)
T d1amua_         225 MFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP-------------------------------  273 (514)
T ss_dssp             HHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-------------------------------
T ss_pred             ccccccccccccccccccccchhhhhhhhhhhhcccccceeeecccccc-------------------------------
Confidence            999999999998876    577888899999999999999876432110                               


Q ss_pred             CCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC---CCCCCccC
Q 005991          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD---NLSGHVGS  467 (666)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~  467 (666)
                                       .-..+++.+++||+++++++.+++..  ++.+++.||+||++.+++......   ...++.|.
T Consensus       274 -----------------~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~  334 (514)
T d1amua_         274 -----------------ERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGA  334 (514)
T ss_dssp             -----------------TTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBE
T ss_pred             -----------------cccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccCccccccc
Confidence                             01158999999999999999887755  788999999999998776554443   34567889


Q ss_pred             CccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhcc------CCCCeeecccEEEEecCCcEEEE
Q 005991          468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI------DGDGWLHTGDIGLWLPGGRLKII  541 (666)
Q Consensus       468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~------~~~gw~~TGDlg~~~~dG~l~i~  541 (666)
                      +.++.++.+.| ++++.++.++   .|||+|+||.++.|||++++.+.+.|      +.+|||+|||+|++|+||+|+|+
T Consensus       335 ~~~~~~v~~~d-~~~~~~~~g~---~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~  410 (514)
T d1amua_         335 PIQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL  410 (514)
T ss_dssp             ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEE
T ss_pred             ceeeeeEeeec-ccceecCCCC---eeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEE
Confidence            99999999999 6777777765   89999999999999999999999887      45889999999999999999999


Q ss_pred             ccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh----hHHHHHHHHcCCCcccccccc
Q 005991          542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP----DVLKDWAASQGIKVIYCFSFR  614 (666)
Q Consensus       542 GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----~~l~~~~~~~~l~~~~~~~~~  614 (666)
                      ||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++++    ++++++++++ |+     .|+
T Consensus       411 GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~~~~~l~~~~~~~-l~-----~~~  483 (514)
T d1amua_         411 GRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEE-LP-----TYM  483 (514)
T ss_dssp             EEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHH-SC-----GGG
T ss_pred             ecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCCCHHHHHHHHHhh-CC-----ccc
Confidence            999999997 7999999999999999999999999997654   58999998854    6899999998 88     999


Q ss_pred             cCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991          615 ANSHVIFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       615 ~p~~i~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      +|..|++++ +|++.+||++|++|++.
T Consensus       484 ~p~~i~~v~~lP~t~~GKi~R~~L~~~  510 (514)
T d1amua_         484 IPSYFIQLDKMPLTSNGKIDRKQLPEP  510 (514)
T ss_dssp             SCSEEEECSSCCBCTTSSBCGGGSCCC
T ss_pred             CceEEEEeCCCCCCCCcChhHHhcCCC
Confidence            999999996 78888899999999973

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=6e-69  Score=594.98  Aligned_cols=486  Identities=21%  Similarity=0.263  Sum_probs=403.3

Q ss_pred             CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991           79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC  158 (666)
Q Consensus        79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  158 (666)
                      .|+.++|+++|+++||++|+++.   +      +.+||+||+++++++|++|.++|+++||+|+|+++|+++|++++|||
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~   95 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL   95 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence            69999999999999999999763   2      45999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH-----HHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEE
Q 005991          159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL  233 (666)
Q Consensus       159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~  233 (666)
                      +++|+++||++++++.+++.++|++++++++++++...     ..........+.+...+.......            .
T Consensus        96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~  163 (536)
T d1mdba_          96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------F  163 (536)
T ss_dssp             HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------S
T ss_pred             HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecccc------------c
Confidence            99999999999999999999999999999999976432     122222223444444443322110            1


Q ss_pred             EehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHH
Q 005991          234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA  313 (666)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~  313 (666)
                      .++.++.    ..+....+..++|+++|+|||||||.||||++||+++...+......+++.++|++++.+|++|.+++.
T Consensus       164 ~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~  239 (536)
T d1mdba_         164 LPLEDLH----TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLS  239 (536)
T ss_dssp             EEGGGCC----CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHH
T ss_pred             cchhhcc----cCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccccccccccccccccccccccee
Confidence            2222221    122334456789999999999999999999999999999999888889999999999999999999986


Q ss_pred             H-HH-HHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005991          314 N-QI-VSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG  390 (666)
Q Consensus       314 ~-~~-~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~  390 (666)
                      . .+ ..+..|.+++..+ +++..++..+++++++.+..+|..+..+........                         
T Consensus       240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  294 (536)
T d1mdba_         240 SPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-------------------------  294 (536)
T ss_dssp             SSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------------
T ss_pred             eccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccc-------------------------
Confidence            5 33 3455567776665 799999999999999999999999887765322110                         


Q ss_pred             CCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-CCCCCCccCCc
Q 005991          391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPN  469 (666)
Q Consensus       391 ~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~  469 (666)
                                       ...++++.+++||+++++...+++.+.++......||.+|.+..+...... ....+++|.|+
T Consensus       295 -----------------~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~  357 (536)
T d1mdba_         295 -----------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPM  357 (536)
T ss_dssp             -----------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEES
T ss_pred             -----------------cccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccccCCcccCC
Confidence                             011489999999999999999999999999999999999977654443322 24567899998


Q ss_pred             cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 005991          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK  549 (666)
Q Consensus       470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik  549 (666)
                      ++....+++.++++.++.++   .|||+++|+.++.||+++++.+...++.+|||+|||+|++++||+|+|+||+||+||
T Consensus       358 ~~~~~~~v~~~~g~~~~~~~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~  434 (536)
T d1mdba_         358 SPYDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQIN  434 (536)
T ss_dssp             STTCEEEEECTTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEE
T ss_pred             CCcceEEEEcCCCCeecccc---cceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEE
Confidence            76665555557777666665   899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc-----ChhHHHHHHHHcCCCcccccccccCcchhH
Q 005991          550 LAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV-----DPDVLKDWAASQGIKVIYCFSFRANSHVIF  621 (666)
Q Consensus       550 l~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~  621 (666)
                      + +|++|+|.+||++|.+||+|.+|+|+|.+++   +.++|+|++     ++++++++++++.++     .|++|+.|++
T Consensus       435 ~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~~l~-----~~~~P~~i~~  508 (536)
T d1mdba_         435 R-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLA-----AYKIPDRVEF  508 (536)
T ss_dssp             C-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCC-----GGGSCSEEEE
T ss_pred             E-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCCCHHHHHHHHHhcCCC-----cCcCccEEEE
Confidence            7 8999999999999999999999999986543   578999986     357899999987788     9999999999


Q ss_pred             HH-HHHHHhhhhhhhhhccc
Q 005991          622 IA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       622 v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++ +|++.+||++|++|++.
T Consensus       509 v~~lP~t~~GKi~r~~L~~~  528 (536)
T d1mdba_         509 VESFPQTGVGKVSKKALREA  528 (536)
T ss_dssp             CSSCCBCTTSCBCHHHHHHH
T ss_pred             ECCCCcCCCcCccHHHHHHH
Confidence            85 78888899999999776

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=1.7e-65  Score=561.68  Aligned_cols=482  Identities=19%  Similarity=0.236  Sum_probs=390.2

Q ss_pred             CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991           78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA  157 (666)
Q Consensus        78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  157 (666)
                      ++|++++|+++|+++||++|+.+.   ++    .+++||+||+++++++|++|+++|+++||+|+++++|+++|++++||
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~---~~----~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   73 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---CC----CcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence            479999999999999999999875   32    25799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehH
Q 005991          158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL  237 (666)
Q Consensus       158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  237 (666)
                      |+++|++++|+++.++++++++++++++++++|++..... ........... .++.++                     
T Consensus        74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~-~~i~~~---------------------  130 (503)
T d3cw9a1          74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQSGSGA-RIIFLG---------------------  130 (503)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHH-HHHHHHTTCCC-EEEEHH---------------------
T ss_pred             HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHH-HHHHhhhcccc-ccccch---------------------
Confidence            9999999999999999999999999999999999865422 22222222222 233222                     


Q ss_pred             HHHhcC----CCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccccc--ccCCCcEEEEcCChHHHHH
Q 005991          238 QLQSQG----CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV--QFYPSDIYMSYLPLAHIYE  311 (666)
Q Consensus       238 ~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~h~~~  311 (666)
                      ++...+    ...+......+++++++++|||||||.||+|+++|+++.+.+......+  .....++++..+|++|.++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  210 (503)
T d3cw9a1         131 DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG  210 (503)
T ss_dssp             HHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHH
T ss_pred             hhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccc
Confidence            221111    1112233456789999999999999999999999999998887766543  3456789999999998888


Q ss_pred             HHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005991          312 RAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS  389 (666)
Q Consensus       312 ~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~  389 (666)
                      ... .+.+...++.+++.+ +++..+...+..++++++..+|..+..+.........                       
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  267 (503)
T d3cw9a1         211 FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS-----------------------  267 (503)
T ss_dssp             HHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCT-----------------------
T ss_pred             cccccccccccccccccccccChHHhhhhhhhceeeccccccccccccccccccccc-----------------------
Confidence            776 455666777776665 8999999999999999999999998877653221111                       


Q ss_pred             CCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCc
Q 005991          390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPN  469 (666)
Q Consensus       390 ~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~  469 (666)
                                       ....++||.+++||++++++....+...++..+.+.||+||++..+...........+.+.+.
T Consensus       268 -----------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~  330 (503)
T d3cw9a1         268 -----------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFS  330 (503)
T ss_dssp             -----------------TCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSEEBCCTTC
T ss_pred             -----------------cccccceEEEEeccccccccccccccccccccccccccccccceeeeeccccccccccccccc
Confidence                             011258999999999999999999999999999999999999887776665555545555555


Q ss_pred             cCcEEEEEecCCCCCCCCCCCCCccEEEEeC-CCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeE
Q 005991          470 PACEIKLVDVPEMNYTSEDQPHPRGEICVRG-PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIF  548 (666)
Q Consensus       470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g-~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~i  548 (666)
                      +.....+.+ ..++.++.|+   .|++++.+ +....||+++++.|++.| .+|||+|||+|++++||.|+++||+||+|
T Consensus       331 ~~~~~~~~~-~~~~~~~~g~---~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~dG~l~~~GR~~d~i  405 (503)
T d3cw9a1         331 EVRIVRIGG-GVDEIVANGE---EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI  405 (503)
T ss_dssp             CEEEECTTS-CTTCBCCTTC---CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSCCE
T ss_pred             cceeeeeec-ccCcccCCCc---cccccccccccccccccCChhhhHHHh-cCCceecccccccccCCeEEeCCCcCCeE
Confidence            555544444 4455555554   78777665 566778999999999999 78999999999999999999999999999


Q ss_pred             EcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcch
Q 005991          549 KLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHV  619 (666)
Q Consensus       549 kl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i  619 (666)
                      |+ +|++|+|.+||++|.+||+|.+|+|+|.+++   +.++|+|+++      +++++++++...|+     .|++|+.|
T Consensus       406 k~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~-----~~~~P~~i  479 (503)
T d3cw9a1         406 IS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELA-----DFKRPKRY  479 (503)
T ss_dssp             EE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHSSSC-----GGGSCSEE
T ss_pred             EE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhcCCC-----CCCCccEE
Confidence            97 8999999999999999999999999997644   5799999874      57899999765588     99999999


Q ss_pred             hHHH-HHHHHhhhhhhhhhccc
Q 005991          620 IFIA-LIHNLCQLYSSKELFRS  640 (666)
Q Consensus       620 ~~v~-~~~~~~gK~~r~~l~~~  640 (666)
                      ++++ +|++.+|||+|++|+|.
T Consensus       480 ~~v~~~P~t~~GKi~R~~L~~~  501 (503)
T d3cw9a1         480 FILDQLPKNALNKVLRRQLVQQ  501 (503)
T ss_dssp             EECSCCCBCTTSCBCHHHHHHH
T ss_pred             EEECCCCcCCCcCccHHHHHHh
Confidence            9995 88888899999999863