Citrus Sinensis ID: 006024

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660----
MSYSDSDSSSYGGDYKNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI
ccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccHHHHHHcccHHHHHcccccEEccccccccccccEEEEEEcccHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHcccccccccccccccccEEEcccccEEcccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccEEEEcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccccEEccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHccccccccccccc
ccccccccccccccHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccHHHHHHHHcHHHHHHcccEEEEcccccccccccccEEEEEcccHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHccHHHHHHHHHHHHHccEEccccEEEccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccEEEEEcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHEEHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHccccEcccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHccccccccccccc
msysdsdsssyggdyknfKQITRERLLYEMLRSaktgksksTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYrrrqplpsmeaiyfiqpTKENVVAFLsdmsgksplykKAFVFFSSPISRELVTHikkdstvlprigALREMNLEyfavdsqgfvtddERALEElfgdeessqKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQtiqnfpmsetCELLILDRSVDQIAPIIHEWTYDAICHDLLnlegnkyvhevpsktdgppekkevlleEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAqiqngsrdgsnlstRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASiypekfegekglnLMKLAKLTADDMTAVNNMRLLGgaleskkstigafSLKFDIHKKKRAarkdrsggeetwqlsRFYPMIEELVEKLgknelskddypcmndpsptfhgttpsaltnevpaahsmrsrrtptwarprssddgyssdsvLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREvvlgssslddppqFITKLKMLTAhelslddiqi
msysdsdsssyggdyknfkQITRERLLYEMLRsaktgkskstwkvLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRElvthikkdstvlpRIGALREMNLEYFAVDSQGFVTDDERALEELfgdeessqkADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHevpsktdgppeKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAaqiqngsrdgsnlstRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLtakeditrenKLRLLMIVASIypekfegekglNLMKLAKLTADDMTAVNNMRLLGgaleskkstigafslkfdihkkkraarkdrsggeetwqlsrfyPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTnevpaahsmrsrrtptwarprssddgyssDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKlnrevvlgssslddpPQFITKLKMLTahelslddiqi
MsysdsdsssyggdyKNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI
***************KNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERAL************ADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVH***************LLEEHDPIWVELRHAHIAD**************************************LVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIH***************TWQLSRFYPMIEELVE************************************************************************KMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGS********FITKLKMLT***********
********************ITRERLLYEMLRSAK*GKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWN***************ETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKY*******************EEHDPIWVELRHAHIADASERLHEKMTGF**********************DLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLL*************************************WQLSRFYPMIEELVEKLGKNELSKDDYPCMNDP************************************************************FVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITK****************
************GDYKNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEEL********KADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHE*********EKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHK**************TWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEV****************************VLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI
************GDYKNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKA***********NLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALES*****************************ETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDP******************************************************KMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLT***********
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MSYSDSDSSSYGGDYKNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query664 2.2.26 [Sep-21-2011]
Q9C5X3666 SNARE-interacting protein yes no 0.981 0.978 0.805 0.0
Q9SZ77662 Protein transport Sec1b O no no 0.971 0.974 0.708 0.0
Q7XWP3665 Probable protein transpor yes no 0.993 0.992 0.683 0.0
Q9C5P7673 Protein transport Sec1a O no no 0.953 0.940 0.691 0.0
Q5VNU3659 Probable protein transpor yes no 0.978 0.986 0.619 0.0
Q54QC8598 Protein transport protein yes no 0.868 0.964 0.293 9e-71
Q64324593 Syntaxin-binding protein yes no 0.841 0.942 0.288 3e-70
Q28288593 Syntaxin-binding protein yes no 0.861 0.964 0.286 6e-69
Q15833593 Syntaxin-binding protein yes no 0.856 0.959 0.284 4e-68
Q62753594 Syntaxin-binding protein yes no 0.856 0.957 0.284 2e-67
>sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2 Back     alignment and function desciption
 Score = 1116 bits (2887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/658 (80%), Positives = 606/658 (92%), Gaps = 6/658 (0%)

Query: 11  YGGDYKNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGV 70
           +GG+YKNF+QITRERLLYEMLRSAKTG SKSTWKVLIMD+LTVKIMSYACKMADITQEGV
Sbjct: 11  HGGEYKNFRQITRERLLYEMLRSAKTGSSKSTWKVLIMDKLTVKIMSYACKMADITQEGV 70

Query: 71  SLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVT 130
           SLVED++RRRQPLPSM+AIYFIQPTKENV+ FLSDMSGKSPLYKKAFVFFSSP+S+ELV 
Sbjct: 71  SLVEDIFRRRQPLPSMDAIYFIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVG 130

Query: 131 HIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMAT 190
           HIKKDS+VLPRIGALREMNLE+FA+DSQGF+TD ERALE+LFGDEE+S+K DACLNVMA+
Sbjct: 131 HIKKDSSVLPRIGALREMNLEFFAIDSQGFITDHERALEDLFGDEETSRKGDACLNVMAS 190

Query: 191 RIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMS 250
           RIATVFASLREFP VRYRAAKSLDA T+TT RDL+PTKLAAG+WNCL K+KQ+I+NFP +
Sbjct: 191 RIATVFASLREFPAVRYRAAKSLDASTMTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQT 250

Query: 251 ETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEE 310
           ETCELLILDRS+DQIAP+IHEWTYDA+CHDLLN+EGNKYVH +PSK+ G PEKK+VLLEE
Sbjct: 251 ETCELLILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEE 310

Query: 311 HDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQ 370
           HDPIW+ELRHAHIADASERLH+KMT F+SKNKAAQ+Q G RDG+ LSTRDLQK+VQALPQ
Sbjct: 311 HDPIWLELRHAHIADASERLHDKMTNFLSKNKAAQLQ-GKRDGAELSTRDLQKMVQALPQ 369

Query: 371 YSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRE 430
           YSEQIDKLSLHVEIA K+N +IRE GLRELGQLEQDLVFGDAG KDVIK+L+ +E+ +RE
Sbjct: 370 YSEQIDKLSLHVEIARKLNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASRE 429

Query: 431 NKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFS 490
            KLRLLMI+A+IYPEKFEGEKG NLMKLAKL++DDMTAVNNM LLG A+++KK+T G F+
Sbjct: 430 GKLRLLMILATIYPEKFEGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFT 489

Query: 491 LKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFH 550
           LKFD+HKKKRA RK+R   E  WQLSRFYPMIEEL+EKL K EL K+D+PCMNDPSP+FH
Sbjct: 490 LKFDLHKKKRAVRKERQ-EEAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDPSPSFH 548

Query: 551 G---TTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFV 607
           G    + +A +++  AA SMRSRRTPTWA+PR SDDGYSSDSVL+HASSDF+KMGQRIFV
Sbjct: 549 GSTSLSSAASSSQGQAAQSMRSRRTPTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFV 608

Query: 608 FIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAH-ELSLDDIQI 664
           FIVGG TRSEL+VCHKL+ KL REV+LGS+SLDDPPQFITKLK+LTA+ +LSLDD+QI
Sbjct: 609 FIVGGATRSELKVCHKLSTKLKREVILGSTSLDDPPQFITKLKLLTANDDLSLDDLQI 666
Regulator of vesicle trafficking involved in cytokinesis and root hair development, but not required for cell elongation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SZ77|SEC1B_ARATH Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=3 Back     alignment and function description
>sp|Q7XWP3|SEC1A_ORYSJ Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2 Back     alignment and function description
>sp|Q9C5P7|SEC1A_ARATH Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3 Back     alignment and function description
>sp|Q5VNU3|SEC1B_ORYSJ Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1 Back     alignment and function description
>sp|Q54QC8|SEC1_DICDI Protein transport protein sec1 OS=Dictyostelium discoideum GN=sec1 PE=3 SV=1 Back     alignment and function description
>sp|Q64324|STXB2_MOUSE Syntaxin-binding protein 2 OS=Mus musculus GN=Stxbp2 PE=2 SV=1 Back     alignment and function description
>sp|Q28288|STXB2_CANFA Syntaxin-binding protein 2 OS=Canis familiaris GN=STXBP2 PE=2 SV=1 Back     alignment and function description
>sp|Q15833|STXB2_HUMAN Syntaxin-binding protein 2 OS=Homo sapiens GN=STXBP2 PE=1 SV=2 Back     alignment and function description
>sp|Q62753|STXB2_RAT Syntaxin-binding protein 2 OS=Rattus norvegicus GN=Stxbp2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query664
224071599666 predicted protein [Populus trichocarpa] 0.986 0.983 0.833 0.0
224125086666 predicted protein [Populus trichocarpa] 0.978 0.975 0.841 0.0
356514152665 PREDICTED: SNARE-interacting protein KEU 0.984 0.983 0.804 0.0
255537107663 plant sec1, putative [Ricinus communis] 0.975 0.977 0.826 0.0
356563274666 PREDICTED: SNARE-interacting protein KEU 0.984 0.981 0.801 0.0
449442403664 PREDICTED: SNARE-interacting protein KEU 1.0 1.0 0.820 0.0
356563276671 PREDICTED: SNARE-interacting protein KEU 0.983 0.973 0.796 0.0
357477033666 SNARE-interacting protein KEULE [Medicag 0.983 0.980 0.796 0.0
225448938753 PREDICTED: SNARE-interacting protein KEU 0.998 0.880 0.801 0.0
297844098665 hypothetical protein ARALYDRAFT_471384 [ 0.981 0.980 0.803 0.0
>gi|224071599|ref|XP_002303535.1| predicted protein [Populus trichocarpa] gi|222840967|gb|EEE78514.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1172 bits (3032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/656 (83%), Positives = 610/656 (92%), Gaps = 1/656 (0%)

Query: 10  SYGGDYKNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEG 69
           +YGGDY+NF+QI+RERLL+EMLRSAKTG SKSTWKVLIMDRLTVKIMSY+CKMADITQEG
Sbjct: 11  AYGGDYRNFRQISRERLLHEMLRSAKTGNSKSTWKVLIMDRLTVKIMSYSCKMADITQEG 70

Query: 70  VSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELV 129
           VSLVED+YRRRQPLPSM+AIYFIQPTKENV+ FLSDM+GKSPLYKKAFVFFSSPISRELV
Sbjct: 71  VSLVEDIYRRRQPLPSMDAIYFIQPTKENVIMFLSDMAGKSPLYKKAFVFFSSPISRELV 130

Query: 130 THIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMA 189
           +HIKKDS+VL RIGALREMNLEYFA+DSQGF+TD+ERALEELFGD+E S K DACLNVMA
Sbjct: 131 SHIKKDSSVLTRIGALREMNLEYFAIDSQGFITDNERALEELFGDDEDSHKGDACLNVMA 190

Query: 190 TRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPM 249
           +RIATVFASLREFP VR+RAA+SLD  T+TT RDL+PTKLAA +W+ L +YKQ I+NFP 
Sbjct: 191 SRIATVFASLREFPFVRFRAARSLDVTTMTTSRDLIPTKLAARIWDSLTQYKQKIENFPQ 250

Query: 250 SETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLE 309
           +ETCELLILDRS+DQIAP+IHEWTYDA+CHDLLN+EGNKYVHEVP K  GPPEKKEVLLE
Sbjct: 251 TETCELLILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHEVPGKAGGPPEKKEVLLE 310

Query: 310 EHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALP 369
           EHDP+W+ELRHAHIA ASERLHEKMT FVSKNKAA+IQ+GSRDG  LSTRDLQ++VQALP
Sbjct: 311 EHDPVWLELRHAHIAFASERLHEKMTNFVSKNKAAKIQHGSRDGGELSTRDLQQMVQALP 370

Query: 370 QYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITR 429
           QYSEQIDKLSLHVEIAGKINRIIRE GLRELGQLEQDLVFGDAG KDVIKFLT KED TR
Sbjct: 371 QYSEQIDKLSLHVEIAGKINRIIRELGLRELGQLEQDLVFGDAGMKDVIKFLTMKEDTTR 430

Query: 430 ENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAF 489
           ENKLRLLMI+A+++PEK EGE+GLN+MKLA+L  DDM AVNNMRLL GA ++KK + GAF
Sbjct: 431 ENKLRLLMILAAVFPEKLEGERGLNIMKLARLPQDDMNAVNNMRLLAGASDTKKRSTGAF 490

Query: 490 SLKFDIHKKKRAARKDRSGGEE-TWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPT 548
           SLKFDIHKKKRAARKDR+G EE TWQLSRFYPMIEEL++KL K ELSKD+YPCMNDPSP+
Sbjct: 491 SLKFDIHKKKRAARKDRTGEEETTWQLSRFYPMIEELIDKLNKGELSKDEYPCMNDPSPS 550

Query: 549 FHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVF 608
           FHGT+ S   + VPA HSMRS+RTPTWARPR+SDDGYSSDS+L+HASSDFKKMGQRIFVF
Sbjct: 551 FHGTSQSTPMHHVPAPHSMRSKRTPTWARPRNSDDGYSSDSILRHASSDFKKMGQRIFVF 610

Query: 609 IVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI 664
           IVGG TRSELRVCHKLT+KL REV+LGSSSLDDPPQF+TKLK+LTA+ELSLDD+QI
Sbjct: 611 IVGGATRSELRVCHKLTSKLQREVILGSSSLDDPPQFMTKLKLLTANELSLDDLQI 666

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125086|ref|XP_002329890.1| predicted protein [Populus trichocarpa] gi|222871127|gb|EEF08258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356514152|ref|XP_003525770.1| PREDICTED: SNARE-interacting protein KEULE-like [Glycine max] Back     alignment and taxonomy information
>gi|255537107|ref|XP_002509620.1| plant sec1, putative [Ricinus communis] gi|223549519|gb|EEF51007.1| plant sec1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356563274|ref|XP_003549889.1| PREDICTED: SNARE-interacting protein KEULE-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449442403|ref|XP_004138971.1| PREDICTED: SNARE-interacting protein KEULE-like [Cucumis sativus] gi|449505029|ref|XP_004162356.1| PREDICTED: SNARE-interacting protein KEULE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356563276|ref|XP_003549890.1| PREDICTED: SNARE-interacting protein KEULE-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|357477033|ref|XP_003608802.1| SNARE-interacting protein KEULE [Medicago truncatula] gi|355509857|gb|AES90999.1| SNARE-interacting protein KEULE [Medicago truncatula] Back     alignment and taxonomy information
>gi|225448938|ref|XP_002272338.1| PREDICTED: SNARE-interacting protein KEULE-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297844098|ref|XP_002889930.1| hypothetical protein ARALYDRAFT_471384 [Arabidopsis lyrata subsp. lyrata] gi|297335772|gb|EFH66189.1| hypothetical protein ARALYDRAFT_471384 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query664
TAIR|locus:2034670666 KEU "keule" [Arabidopsis thali 0.974 0.971 0.808 2.4e-289
TAIR|locus:2118126662 SEC1B [Arabidopsis thaliana (t 0.971 0.974 0.711 2.3e-245
TAIR|locus:2025482673 SEC1A "secretory 1A" [Arabidop 0.950 0.937 0.693 5.1e-241
UNIPROTKB|F1P3H1592 STXBP3 "Uncharacterized protei 0.454 0.510 0.350 1.6e-65
UNIPROTKB|F1MXB4592 STXBP3 "Uncharacterized protei 0.436 0.489 0.344 2.5e-62
UNIPROTKB|O00186592 STXBP3 "Syntaxin-binding prote 0.436 0.489 0.340 3.6e-62
MGI|MGI:107362592 Stxbp3a "syntaxin binding prot 0.436 0.489 0.331 9.4e-61
UNIPROTKB|E2QUA6592 STXBP3 "Uncharacterized protei 0.438 0.491 0.338 1.1e-60
UNIPROTKB|E7EQD5604 STXBP2 "Syntaxin-binding prote 0.653 0.718 0.3 3.8e-60
UNIPROTKB|Q28288593 STXBP2 "Syntaxin-binding prote 0.659 0.738 0.290 9.9e-58
TAIR|locus:2034670 KEU "keule" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2779 (983.3 bits), Expect = 2.4e-289, P = 2.4e-289
 Identities = 528/653 (80%), Positives = 602/653 (92%)

Query:    16 KNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVED 75
             KNF+QITRERLLYEMLRSAKTG SKSTWKVLIMD+LTVKIMSYACKMADITQEGVSLVED
Sbjct:    16 KNFRQITRERLLYEMLRSAKTGSSKSTWKVLIMDKLTVKIMSYACKMADITQEGVSLVED 75

Query:    76 LYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKD 135
             ++RRRQPLPSM+AIYFIQPTKENV+ FLSDMSGKSPLYKKAFVFFSSP+S+ELV HIKKD
Sbjct:    76 IFRRRQPLPSMDAIYFIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVGHIKKD 135

Query:   136 STVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATV 195
             S+VLPRIGALREMNLE+FA+DSQGF+TD ERALE+LFGDEE+S+K DACLNVMA+RIATV
Sbjct:   136 SSVLPRIGALREMNLEFFAIDSQGFITDHERALEDLFGDEETSRKGDACLNVMASRIATV 195

Query:   196 FASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCEL 255
             FASLREFP VRYRAAKSLDA T+TT RDL+PTKLAAG+WNCL K+KQ+I+NFP +ETCEL
Sbjct:   196 FASLREFPAVRYRAAKSLDASTMTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQTETCEL 255

Query:   256 LILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIW 315
             LILDRS+DQIAP+IHEWTYDA+CHDLLN+EGNKYVH +PSK+ G PEKK+VLLEEHDPIW
Sbjct:   256 LILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEEHDPIW 315

Query:   316 VELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQI 375
             +ELRHAHIADASERLH+KMT F+SKNKAAQ+Q G RDG+ LSTRDLQK+VQALPQYSEQI
Sbjct:   316 LELRHAHIADASERLHDKMTNFLSKNKAAQLQ-GKRDGAELSTRDLQKMVQALPQYSEQI 374

Query:   376 DKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRL 435
             DKLSLHVEIA K+N +IRE GLRELGQLEQDLVFGDAG KDVIK+L+ +E+ +RE KLRL
Sbjct:   375 DKLSLHVEIARKLNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASREGKLRL 434

Query:   436 LMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDI 495
             LMI+A+IYPEKFEGEKG NLMKLAKL++DDMTAVNNM LLG A+++KK+T G F+LKFD+
Sbjct:   435 LMILATIYPEKFEGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFTLKFDL 494

Query:   496 HKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTP- 554
             HKKKRA RK+R   E  WQLSRFYPMIEEL+EKL K EL K+D+PCMNDPSP+FHG+T  
Sbjct:   495 HKKKRAVRKERQE-EAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDPSPSFHGSTSL 553

Query:   555 --SALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGG 612
               +A +++  AA SMRSRRTPTWA+PR SDDGYSSDSVL+HASSDF+KMGQRIFVFIVGG
Sbjct:   554 SSAASSSQGQAAQSMRSRRTPTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFVFIVGG 613

Query:   613 TTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHE-LSLDDIQI 664
              TRSEL+VCHKL+ KL REV+LGS+SLDDPPQFITKLK+LTA++ LSLDD+QI
Sbjct:   614 ATRSELKVCHKLSTKLKREVILGSTSLDDPPQFITKLKLLTANDDLSLDDLQI 666
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
GO:0008565 "protein transporter activity" evidence=ISS
GO:0009306 "protein secretion" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0019898 "extrinsic to membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005773 "vacuole" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0000910 "cytokinesis" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
TAIR|locus:2118126 SEC1B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025482 SEC1A "secretory 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3H1 STXBP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MXB4 STXBP3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O00186 STXBP3 "Syntaxin-binding protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107362 Stxbp3a "syntaxin binding protein 3A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2QUA6 STXBP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E7EQD5 STXBP2 "Syntaxin-binding protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q28288 STXBP2 "Syntaxin-binding protein 2" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SZ77SEC1B_ARATHNo assigned EC number0.70830.97130.9743nono
Q7XWP3SEC1A_ORYSJNo assigned EC number0.68310.99390.9924yesno
Q5VNU3SEC1B_ORYSJNo assigned EC number0.61940.97890.9863yesno
Q9C5X3KEULE_ARATHNo assigned EC number0.80540.98190.9789yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query664
pfam00995554 pfam00995, Sec1, Sec1 family 1e-147
COG5158582 COG5158, SEC1, Proteins involved in synaptic trans 4e-55
>gnl|CDD|216231 pfam00995, Sec1, Sec1 family Back     alignment and domain information 
 Score =  437 bits (1126), Expect = e-147
 Identities = 179/612 (29%), Positives = 311/612 (50%), Gaps = 63/612 (10%)

Query: 43  WKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAF 102
           WKVL++D+ T KI+S    ++D+ + GV+LVE++  +R+PLP + AIYFI+PT+ENV   
Sbjct: 1   WKVLVLDKETTKILSSVLTVSDLLEHGVTLVENIENKREPLPDLPAIYFIRPTEENVDRI 60

Query: 103 LSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVT 162
           + D+  K+P YK   +FF++ +SR L+  + + + V   +  ++E+ L++  ++S  F  
Sbjct: 61  IDDL--KNPKYKSYHIFFTNSLSRSLLERLAE-ADVAELVKQVKEIYLDFIPLESDLFSL 117

Query: 163 DDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFR 222
           +   +  +L+    S    ++ L  +A  + ++  +L E P++RY+   S          
Sbjct: 118 ELPNSFRDLY----SPDGDESDLERIAEGLFSLLLTLGEIPIIRYQ-GNSAAER------ 166

Query: 223 DLVPTKLAAGVWNCLMKYKQTIQNFPMS-ETCELLILDRSVDQIAPIIHEWTYDAICHDL 281
             +  KLA  +   L  +     + P S     LLILDRS+D I P++H+WTY A+ HDL
Sbjct: 167 --LAEKLAQLLQENLDLFDADNPSTPPSKPRPVLLILDRSIDLITPLLHQWTYQAMVHDL 224

Query: 282 LNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKN 341
           L ++ N+    + +  +G   KKEV+L+E+DP WVE RH H  D +E++ +++  +  +N
Sbjct: 225 LGIKNNRV--TLDTPGNGGESKKEVVLDENDPFWVENRHLHFPDVAEKIKKELKEYKEEN 282

Query: 342 KAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELG 401
           K +  +         S  DL++ V+ LP++ ++  KLSLH+ +A ++ + I+E  L ++ 
Sbjct: 283 KNSNKK-------KKSISDLKEFVEKLPEFQKEKGKLSLHLNLAEELMKQIKERKLDKVS 335

Query: 402 QLEQDLVFGDAGFKDVIKF--LTAKEDITRENKLRLLMIVA-SIYPEKFEGEKGLNLMKL 458
           +LEQDL  G    K       L     +  E+KLRLL++ +     +  + E    L+  
Sbjct: 336 ELEQDLATGSDADKQKKDILELLNNPKVPLEDKLRLLLLYSLRDGGKGKDLEDLRKLLLH 395

Query: 459 AKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRF 518
           A +  + +  V N+  LGG     +++   FS   D  K                 LSR+
Sbjct: 396 AGIGPEALNLVKNLEQLGG--LLSRTSGSNFSDLRDKLKLLVKEVSKSLPKGVKNVLSRY 453

Query: 519 YPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARP 578
            P+++ ++E L K +L  D YP  +       G              S+RS+R     + 
Sbjct: 454 KPLLKRILEDLIKGKLDTDSYPYFDPKLANASGPQ-----------GSLRSKRPTAAGQG 502

Query: 579 RSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN-REVVLGSS 637
           R                    +  QRI VF+VGG T SE R  ++L+ K N + V++GS+
Sbjct: 503 R--------------------QPPQRIIVFVVGGVTYSEARALYELSKKTNGKRVIIGST 542

Query: 638 SLDDPPQFITKL 649
           S+ +P  F+ +L
Sbjct: 543 SILNPESFLEEL 554

Length = 554
>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 664
KOG1300593 consensus Vesicle trafficking protein Sec1 [Intrac 100.0
PF00995564 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m 100.0
KOG1299549 consensus Vacuolar sorting protein VPS45/Stt10 (Se 100.0
COG5158582 SEC1 Proteins involved in synaptic transmission an 100.0
KOG1302600 consensus Vacuolar sorting protein VPS33/slp1 (Sec 100.0
KOG1301621 consensus Vesicle trafficking protein Sly1 (Sec1 f 100.0
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=5.8e-102  Score=822.11  Aligned_cols=575  Identities=42%  Similarity=0.712  Sum_probs=495.1

Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeccccCCCCCCCCeEEEEecCCH
Q 006024           17 NFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTK   96 (664)
Q Consensus        17 ~l~~~~~~~l~~~~L~~v~~g~~~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt~   96 (664)
                      +|++..+++++..+++ +.   ....|||||+|+.+++|+|+||+|++++++||++|+.|++.|+|+|.+.|||||+|+.
T Consensus         2 ~l~~l~~~kil~~v~~-~~---k~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY~i~pt~   77 (593)
T KOG1300|consen    2 GLKELVKKKILEDVLR-VE---KKGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIYFITPTE   77 (593)
T ss_pred             chHHHHHHHHHHHhcc-cC---CCCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEEEecCch
Confidence            4788999999988887 32   2347999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeeCCcchhhhhcCCCc
Q 006024           97 ENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEE  176 (664)
Q Consensus        97 ~~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~~~  176 (664)
                      ++|+++++||..+.|.|+.+||||+..||+.++..+.+ ..+...|+++.|++++|+|+|+++|+++.+++|..+|.+. 
T Consensus        78 ~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~lf~~l~k-s~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~-  155 (593)
T KOG1300|consen   78 ESVDCLIKDFEGRSPLYKAAHIFFLDPCPDPLFNKLSK-SRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPD-  155 (593)
T ss_pred             hhHHHHHHhhcccCcccceEEEEEcCCCCHHHHHHHHh-hhHhhhhhhheecccccceecceeeeecChhhHHHhcCch-
Confidence            99999999997667899999999999999999999974 4567889999999999999999999999999999999975 


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhhHHHHHHHHHHHHHHhhhhcCCCCCCCCeeEE
Q 006024          177 SSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELL  256 (664)
Q Consensus       177 ~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~~~~~~~Li  256 (664)
                      +.......+..+|++|++||.++|++|.|||++.....|       ..+|+++|.++++.+..|+.+.+++|..+++.||
T Consensus       156 ~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~a-------s~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLl  228 (593)
T KOG1300|consen  156 NAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNA-------SELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELL  228 (593)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCH-------HHHHHHHHHHHHHHHHhcccccCCCCCcccceEE
Confidence            445557899999999999999999999999998865544       2689999999999999998777788888899999


Q ss_pred             EecCCCCccchhhhhhhhhHHHhhhcccCCCeEEEeecCCCCCCCcceEEecCCCChHHHHhhhccHHHHHHHHHHHHHH
Q 006024          257 ILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTG  336 (664)
Q Consensus       257 IlDR~~D~iTPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~  336 (664)
                      |+||++|+++|+||+||||||+||+++|++|.|.|+.+...|+  .+|+++|+++|++|.++||+||++|.+.|++.+++
T Consensus       229 IlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~--~kk~vllde~D~~WveLRH~HIadvse~l~~~~k~  306 (593)
T KOG1300|consen  229 ILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGE--KKKEVLLDEDDDLWVELRHKHIADVSERLTKKMKN  306 (593)
T ss_pred             EEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCC--ccceeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987655443  37889999999999999999999999999999999


Q ss_pred             HHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhcCCC-cHH
Q 006024          337 FVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDA-GFK  415 (664)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~g~~-~~~  415 (664)
                      |..+++....     +++..|+.||+.+|++||+|+++..+++.|+.||++|++.++. .+.+++.+||++++|.+ ..+
T Consensus       307 f~~~nk~~~~-----~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~  380 (593)
T KOG1300|consen  307 FSSKNKRLQT-----KSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGE  380 (593)
T ss_pred             HHhhhhhhhc-----cccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccc
Confidence            9998865433     3446799999999999999999999999999999999999988 99999999999999943 333


Q ss_pred             H-------HHHHhhhcCCCCchhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccccccCCC
Q 006024          416 D-------VIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGA  488 (664)
Q Consensus       416 ~-------~~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~  488 (664)
                      .       +++.+. ..+++..||+|++++|.+. .+|+...+..+|+++.|++.++..++.+++.+|.....     +.
T Consensus       381 kik~~~~~~~p~l~-~~~~~~~dklR~Illy~~~-~~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~-----~~  453 (593)
T KOG1300|consen  381 KIKDSLRDLLPILL-ESNVRLLDKLRLILLYIFE-RKGIIEENLAKLLQHAGISVEEMQIIQNLHILGVPVTK-----DS  453 (593)
T ss_pred             cHHHHHHhhhhhhc-ccCchHHHHHHHHHHHHHh-cCCccHHHHHHHhcccCCCchHHHHHhhHHHhCCcccc-----Cc
Confidence            3       333443 4678999999999999998 57999999999999999999999999999999876543     22


Q ss_pred             CccchhhhhhhhhcccCCCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCccccccc
Q 006024          489 FSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMR  568 (664)
Q Consensus       489 ~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~s~r  568 (664)
                      +..+|     ..+.++++. .+..|.+|||+|.++.|+|.+++++|++++|||+.+++....|.             ...
T Consensus       454 ~~~k~-----~~~~rker~-~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~~-------------~~~  514 (593)
T KOG1300|consen  454 FLLKF-----DPPERKERV-EEQTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSETSSGS-------------AAT  514 (593)
T ss_pred             ccccC-----CCCcccccc-ccceeeeeeeehHHHHHHHHHHhccCChhhCccccCCccccccC-------------ccc
Confidence            22222     222255664 78899999999999999999999999999999998765221111             112


Q ss_pred             CCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHH
Q 006024          569 SRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITK  648 (664)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~  648 (664)
                      ++|++.|.+.....              .....++++||||+||+||+|+|++|++++..+++|+||||+|++|.+|++.
T Consensus       515 Sar~~~~~~~k~~~--------------~~~~~g~ri~VfIiGGvT~SEmRvaYevs~~~~~EViiGS~~iltP~~fL~~  580 (593)
T KOG1300|consen  515 SARYGHPLSNKTPS--------------AFKKPGQRIIVFIIGGVTFSEMRVAYEVSEKLNREVIIGSDHILTPTKFLDD  580 (593)
T ss_pred             cccccCcccccCcc--------------hhhccCceEEEEEeCCccHHHHHHHHHHHHhhCceEEECCcccCCHHHHHHH
Confidence            23334454432210              1235789999999999999999999999999999999999999999999999


Q ss_pred             Hhcc
Q 006024          649 LKML  652 (664)
Q Consensus       649 l~~l  652 (664)
                      |+.+
T Consensus       581 lk~~  584 (593)
T KOG1300|consen  581 LKLL  584 (593)
T ss_pred             Hhhc
Confidence            9943

>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis [] Back     alignment and domain information
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query664
1fvf_A591 Crystal Structure Analysis Of Neuronal Sec1 From Th 1e-68
3c98_A606 Revised Structure Of The Munc18a-Syntaxin1 Complex 5e-67
3puj_A594 Crystal Structure Of The Munc18-1 And Syntaxin4 N-P 7e-67
1epu_A591 X-Ray Crystal Structure Of Neuronal Sec1 From Squid 2e-63
2pjx_A592 Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide 4e-58
2xhe_A650 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 5e-56
1mqs_A671 Crystal Structure Of Sly1p In Complex With An N-Ter 2e-25
1y9j_A159 Solution Structure Of The Rat Sly1 N-Terminal Domai 5e-08
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid L. Pealei Length = 591 Back     alignment and structure 
Iteration: 1

 Score =  258 bits (658), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 187/630 (29%), Positives = 328/630 (52%), Gaps = 74/630 (11%)
Query: 38  KSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKE 97
           K  + WKVLI+D+L+++++S  CKM +I  EG++LVED+ RRR+PLP +EA+Y I PT+E
Sbjct: 20  KKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEE 79
Query: 98  NVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVD 156
           +V   ++D     +P Y+ A +FF+     EL   + K ST    I  L+E+N+ +   +
Sbjct: 80  SVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-STTARFIKTLKEINIAFLPYE 138
Query: 157 SQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAM 216
           SQ F  D      +++ +   +Q         A +IAT+ A+L E+P VRYR+    +A 
Sbjct: 139 SQIFSLDSPDTF-QVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENA- 196
Query: 217 TITTFRDLVPTKLAAGVWNCLMKYKQ---TIQNFPMSETCELLILDRSVDQIAPIIHEWT 273
              +F  LV  KL A        Y+    T+   P  +  +LLILDR  D I+P++HE T
Sbjct: 197 ---SFAQLVQQKLDA--------YRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELT 245
Query: 274 YDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEK 333
           + A+ +DLL +E + Y + V +  +  PE KEVLL+E D +WVE+RH HIA  S+ + +K
Sbjct: 246 FQAMAYDLLPIENDVYKY-VNTGGNEVPE-KEVLLDEKDDLWVEMRHQHIAVVSQNVTKK 303
Query: 334 MTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIR 393
           +  F  + +     + +        +DL ++++ +PQY +++ K S H+ +A    +  +
Sbjct: 304 LKQFADEKRMGTAADKA------GIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQ 357
Query: 394 ETGLRELGQLEQDLVFG-DAG-------FKDVIKFLTAKEDITRENKLRLLMIVASIYPE 445
           +  + +L ++EQDL  G DA         ++++  L  ++ I+  +K+R++++   I+  
Sbjct: 358 QH-VDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQK-ISAYDKIRIILLYI-IHKG 414
Query: 446 KFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKD 505
               E    L++ A + A++   +N+M+ LG  +       G   +    H   R  R+ 
Sbjct: 415 GISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDG---GRRKIPQPYHTHNRKERQ- 470
Query: 506 RSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAH 565
               + T+Q+SR+ P +++++E   +++L    YP +N   P              P+  
Sbjct: 471 ---ADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPR-------------PSCQ 514
Query: 566 SMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKL- 624
              S R   W +    D G +S            K G R+ +F+VGG + SE+R  +++ 
Sbjct: 515 QPVSVRYGHWHK----DKGQAS-----------YKSGPRLIIFVVGGISYSEMRSAYEVT 559
Query: 625 -TAKLNREVVLGSSSLDDPPQFITKLKMLT 653
            TAK N EV+LGS+ +  P   +  L+ ++
Sbjct: 560 QTAKNNWEVILGSTHILTPEGLLRDLRKIS 589
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 606 Back     alignment and structure
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide Complex Length = 594 Back     alignment and structure
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid Length = 591 Back     alignment and structure
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide Complex Length = 592 Back     alignment and structure
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 650 Back     alignment and structure
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal Peptide Of Sed5p Length = 671 Back     alignment and structure
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain Length = 159 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query664
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 1e-131
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 1e-115
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 1e-113
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 1e-112
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 1e-108
1y9j_A159 SEC1 family domain containing protein 1; membrane 1e-37
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650 Back     alignment and structure
 Score =  401 bits (1030), Expect = e-131
 Identities = 147/658 (22%), Positives = 311/658 (47%), Gaps = 47/658 (7%)

Query: 15  YKNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVE 74
           + + K   +  L    LRS   G     WKVL++D+  ++++S   +M++I   GV++VE
Sbjct: 1   HMSLKSAVKTVLT-NSLRSVADG---GDWKVLVVDKPALRMISECARMSEILDLGVTVVE 56

Query: 75  DLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKK 134
           D+ ++R+ LP    +YFI+PT+EN+   + D + ++P Y+ A +FF SP+   L+  +  
Sbjct: 57  DVSKQRKVLPQFHGVYFIEPTEENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLAS 116

Query: 135 DSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIAT 194
            +  +  +  L+E+N  +   + + F  ++   L + +G   SS      ++ +  R++T
Sbjct: 117 -AKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRSSS----YNIDHLVRRLST 171

Query: 195 VFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCE 254
           +  ++   P+VRY +  +     +      +  ++   V   L+  ++           +
Sbjct: 172 LCTTMNVAPIVRYSSTSTPGTERMA---MQLQKEIDMSVSQGLINAREG------KLKSQ 222

Query: 255 LLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPI 314
            LILDR+VD  +P++HE TY A  +DLLN+E + Y +       G  ++++V+L E D I
Sbjct: 223 FLILDRAVDLKSPLVHELTYQAAAYDLLNIENDIYSYS-TVDAGGREQQRQVVLGEDDDI 281

Query: 315 WVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQ 374
           W+++RH HI++   ++      F    +  Q    S+ G       L+++++ LPQ+ EQ
Sbjct: 282 WLQMRHLHISEVFRKVKSSFDEFCVSARRLQGLRDSQQGEG-GAGALKQMLKDLPQHREQ 340

Query: 375 IDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKF-------LTAKEDI 427
           + K SLH++++  IN     + +    + EQ++V  +    + ++        +     +
Sbjct: 341 MQKYSLHLDMSNAINMAF-SSTIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRV 399

Query: 428 TRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIG 487
           + E+KLR LM+   +        +  NL+  A +     +A+ N+ +LG  + + +    
Sbjct: 400 STEDKLRCLML-CVLAKNGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADR---- 454

Query: 488 AFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSP 547
                    + ++     R   +  + LSR+ P++++L+E +   +L  + YP + D   
Sbjct: 455 ---------RGRKPKTMKRIERDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPS 505

Query: 548 TFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLK-----HASSDFKKMG 602
                  S    E     +  +R+   WA+ + ++    S           A+   +   
Sbjct: 506 VVQPKRASKSVEEDDDGPATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAK 565

Query: 603 QRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLD 660
            ++FVFI G  + +E+R  ++++     EV +G+ ++  P +F+  + +L   +  + 
Sbjct: 566 PKLFVFINGTVSYNEIRCAYEVSQSSGYEVYIGAHNIATPAEFVELVSLLDKADQDVQ 623
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594 Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592 Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591 Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query664
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 100.0
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 100.0
3c98_A606 Syntaxin-binding protein 1; protein complex, alter 100.0
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 100.0
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 100.0
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 100.0
1y9j_A159 SEC1 family domain containing protein 1; membrane 99.96
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A Back     alignment and structure
Probab=100.00  E-value=6.5e-108  Score=926.08  Aligned_cols=573  Identities=29%  Similarity=0.567  Sum_probs=475.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeccccCCCCCCCCeEEEEecCC
Q 006024           16 KNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPT   95 (664)
Q Consensus        16 ~~l~~~~~~~l~~~~L~~v~~g~~~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt   95 (664)
                      -+||+++|++|+++||+++++   .++|||||+|+.+++|||++|++++|+++||++|++|++.|+|+|+++|||||+||
T Consensus         4 ~~lk~~~~~~l~~~~l~~~~~---~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt   80 (594)
T 1dn1_A            4 IGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPS   80 (594)
T ss_dssp             CCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCC
T ss_pred             hhHHHHHHHHHHHHHHhhccc---CCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceEEEEeCC
Confidence            369999999999889999853   34799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeeCCcchhhhhcCC
Q 006024           96 KENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGD  174 (664)
Q Consensus        96 ~~~i~~i~~d~~~-~~~~y~~~~i~F~~~~p~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~  174 (664)
                      .+||++|++||++ ..++|++|||||++.+|+.+++.||+ +++.+.|+++.|+++||+|+|+|+|||++|++|..+|.+
T Consensus        81 ~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~-~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~  159 (594)
T 1dn1_A           81 EKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSP  159 (594)
T ss_dssp             HHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCG
T ss_pred             HHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHh-cchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCC
Confidence            9999999999974 23699999999999999999999997 578999999999999999999999999999999999996


Q ss_pred             CcChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhhHHHHHHHHHHHHHHhhhhcCCCC---CCC
Q 006024          175 EESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFP---MSE  251 (664)
Q Consensus       175 ~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~---~~~  251 (664)
                      ..+ .+....++++|++|+++|.++|.+|.|||+|+.            ..|+++|+.|++.|.++...++.++   ..+
T Consensus       160 ~~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~------------~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~  226 (594)
T 1dn1_A          160 HKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDKA  226 (594)
T ss_dssp             GGT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGG
T ss_pred             ccc-ccchHHHHHHHHHHHHHHHHcCCCCEEEECCCc------------hHHHHHHHHHHHHHHHhhccCccccCCCCCC
Confidence            432 234678999999999999999999999999874            2477899999999988776544432   234


Q ss_pred             CeeEEEecCCCCccchhhhhhhhhHHHhhhcccCCCeEEEeecCCCCCCCcceEEecCCCChHHHHhhhccHHHHHHHHH
Q 006024          252 TCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLH  331 (664)
Q Consensus       252 ~~~LiIlDR~~D~iTPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~  331 (664)
                      +++|||+||++|++|||+||||||||+||+|||++|+|+++.+.  .+..++|++.|+++|+||.++||+||++|++.|.
T Consensus       227 ~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~  304 (594)
T 1dn1_A          227 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVT  304 (594)
T ss_dssp             GCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHH
T ss_pred             CCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhccCHHHHHHHHH
Confidence            78999999999999999999999999999999999999998632  1234568899999999999999999999999999


Q ss_pred             HHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhcCC
Q 006024          332 EKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGD  411 (664)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~g~  411 (664)
                      +++++|+++++..       ..+..+++||++||++||+|+++++.+++|++||++|++.+++ .|++++++||+|++|.
T Consensus       305 ~~~~~~~~~~~~~-------~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~  376 (594)
T 1dn1_A          305 RSLKDFSSSKRMN-------TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGT  376 (594)
T ss_dssp             HHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSB
T ss_pred             HHHHHHHHHhhhc-------ccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence            9999999865421       1235578899999999999999999999999999999999987 8999999999999986


Q ss_pred             Cc--------HHHHHHHhhhcCCCCchhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCcccccc
Q 006024          412 AG--------FKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKK  483 (664)
Q Consensus       412 ~~--------~~~~~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~  483 (664)
                      +.        .+.+.++|. ++.++.+|||||+|||++++ +|+.++++.++++++|++.+++.++.||+++|+...++.
T Consensus       377 d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~  454 (594)
T 1dn1_A          377 DAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDS  454 (594)
T ss_dssp             CSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCC
T ss_pred             CcccchhHHHHHHHHHHHh-CCCCChHhHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccc
Confidence            42        245667776 46789999999999999997 589989999999999999999999999999997654421


Q ss_pred             ccCCCCccchhhhhhhhhcccCCCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCcc
Q 006024          484 STIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPA  563 (664)
Q Consensus       484 ~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~  563 (664)
                      .       .   .|.+.+.++.+ +.++.|.+|||+|++++++|++++|+|++++|||+.++++...+            
T Consensus       455 ~-------~---~k~~~~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~------------  511 (594)
T 1dn1_A          455 T-------L---RRRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS------------  511 (594)
T ss_dssp             G-------G---GCCCCCCCCCC-CCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC------------------
T ss_pred             c-------c---ccccccccccC-CCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCcccc------------
Confidence            1       0   11122233333 57899999999999999999999999999999999765421100            


Q ss_pred             cccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhC-CCeEEEccCcccCh
Q 006024          564 AHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL-NREVVLGSSSLDDP  642 (664)
Q Consensus       564 ~~s~r~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTysEi~~l~~l~~~~-~~~iiigsT~I~~~  642 (664)
                       .+..+.|+++|++.+...+               ...++++||||+||+||+|+|++|++++.. +++|+||||+|+||
T Consensus       512 -~~~~s~r~~~w~~~~~~~~---------------~~~~~riivFivGG~Ty~E~r~~~els~~~~~~~VilG~t~il~p  575 (594)
T 1dn1_A          512 -TTAVSARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTP  575 (594)
T ss_dssp             ------------------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECH
T ss_pred             -ccccccccccccccCCccc---------------cccCCcEEEEEeCCccHHHHHHHHHHHhhcCCceEEEeeCCcCCH
Confidence             0112335578986542211               125789999999999999999999999886 58999999999999


Q ss_pred             hHHHHHHhccCCCC
Q 006024          643 PQFITKLKMLTAHE  656 (664)
Q Consensus       643 ~~fi~~l~~l~~~~  656 (664)
                      .+|+++|..|++++
T Consensus       576 ~~Fl~~l~~l~~~~  589 (594)
T 1dn1_A          576 QKLLDTLKKLNKTD  589 (594)
T ss_dssp             HHHHHHHTTTTSCS
T ss_pred             HHHHHHHHHhCCCc
Confidence            99999999998766
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Back     alignment and structure
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A Back     alignment and structure
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 664
d1epua_590 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor 1e-141
d1dn1a_589 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no 1e-139
d1mqsa_653 e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha 1e-133
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

 Score =  421 bits (1084), Expect = e-141
 Identities = 177/646 (27%), Positives = 320/646 (49%), Gaps = 69/646 (10%)

Query: 18  FKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLY 77
            K    E+++ +++ + K     + WKVLI+D+L+++++S  CKM +I  EG++LVED+ 
Sbjct: 2   LKTAVHEKIMNDVVLAVKK---NAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDIN 58

Query: 78  RRRQPLPSMEAIYFIQPTKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDS 136
           RRR+PLP +EA+Y I PT+E+V   ++D     +P Y+ A +FF+     EL   + K S
Sbjct: 59  RRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-S 117

Query: 137 TVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVF 196
           T    I  L+E+N+ +   +SQ F  D     +  + +   +Q         A +IAT+ 
Sbjct: 118 TTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYY-NPSRAQGGIPNKERCAEQIATLC 176

Query: 197 ASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELL 256
           A+L E+P VRYR+    +A    +F  LV  KL     +       T+   P  +  +LL
Sbjct: 177 ATLGEYPSVRYRSDFDENA----SFAQLVQQKL-----DAYRADDPTMGEGPQKDRSQLL 227

Query: 257 ILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWV 316
           ILDR  D I+P++HE T+ A+ +DLL +E + Y  +  +       +KEVLL+E D +WV
Sbjct: 228 ILDRGFDPISPLLHELTFQAMAYDLLPIENDVY--KYVNTGGNEVPEKEVLLDEKDDLWV 285

Query: 317 ELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQID 376
           E+RH HIA  S+ + +K+  F  + +                +DL ++++ +PQY +++ 
Sbjct: 286 EMRHQHIAVVSQNVTKKLKQFADEKRMGT------AADKAGIKDLSQMLKKMPQYQKELS 339

Query: 377 KLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLT-------AKEDITR 429
           K S H+ +A    +  ++  + +L ++EQDL  G     + I+            + I+ 
Sbjct: 340 KYSTHLHLAEDCMKQYQQH-VDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISA 398

Query: 430 ENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAF 489
            +K+R++++   I+      E    L++ A + A++   +N+M+ LG  +          
Sbjct: 399 YDKIRIILL-YIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIP 457

Query: 490 SLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTF 549
                 ++K+R         + T+Q+SR+ P +++++E   +++L    YP +N   P  
Sbjct: 458 QPYHTHNRKER-------QADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPR- 509

Query: 550 HGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFI 609
                       P+     S R   W + +                    K G R+ +F+
Sbjct: 510 ------------PSCQQPVSVRYGHWHKDKGQAS---------------YKSGPRLIIFV 542

Query: 610 VGGTTRSELRVCHKLT--AKLNREVVLGSSSLDDPPQFITKLKMLT 653
           VGG + SE+R  +++T  AK N EV+LGS+ +  P   +  L+ ++
Sbjct: 543 VGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKIS 588
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query664
d1dn1a_589 Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax 100.0
d1epua_590 Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig 100.0
d1mqsa_653 Sly1P protein {Baker's yeast (Saccharomyces cerevi 100.0
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-98  Score=856.82  Aligned_cols=572  Identities=30%  Similarity=0.563  Sum_probs=472.7

Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeccccCCCCCCCCeEEEEecCCH
Q 006024           17 NFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTK   96 (664)
Q Consensus        17 ~l~~~~~~~l~~~~L~~v~~g~~~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt~   96 (664)
                      +||++++++++++|+++|+ |  ++.|||||+|+.+++|||++|++++|+++||++++.|++.|+|+|+++|||||+|+.
T Consensus         2 ~~~~~~~~~~l~~~~~~v~-~--~~~wKvLI~D~~~~~ils~~~~~~~L~~~gV~l~~~l~~~r~~~~~~~aIy~i~Pt~   78 (589)
T d1dn1a_           2 GLKAVVGEKIMHDVIKKVK-K--KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSE   78 (589)
T ss_dssp             CHHHHHHHHHHHHTTGGGC-C--TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCCH
T ss_pred             ChHHHHHHHHHHHHHhccC-C--CCccEEEEEcCCcHHHHHhhcCHHHHHHCCCeEEEeccCCCCCCCCCCEEEEEcCCH
Confidence            5899999999998999997 3  346999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeeCCcchhhhhcCCC
Q 006024           97 ENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDE  175 (664)
Q Consensus        97 ~~i~~i~~d~~~-~~~~y~~~~i~F~~~~p~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~~  175 (664)
                      +||++|++||++ ..++|++|||+|++++|+.+++.||+ +++++.|.+|.|+++||+|+|+|+|+|++|++|..+|.++
T Consensus        79 ~ni~~i~~d~~~~~~~~Y~~~~i~F~~~~~~~~le~La~-~~~~~~i~~v~e~~~df~~le~d~fsl~~~~~~~~~~~~~  157 (589)
T d1dn1a_          79 KSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPH  157 (589)
T ss_dssp             HHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGG
T ss_pred             HHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHh-cCccccCCeEEEEecceeeCCCCEEEecCCchHHHhcCCc
Confidence            999999999975 23589999999999999999999997 4788999999999999999999999999999999999865


Q ss_pred             cChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhhHHHHHHHHHHHHHHhhhhcCCCCC---CCC
Q 006024          176 ESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPM---SET  252 (664)
Q Consensus       176 ~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~~---~~~  252 (664)
                      +. ....+.++++|++|+++|.++|.+|.|||+|++            ..|+++|+.+++++..+.++++.++.   .++
T Consensus       158 ~~-~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~------------~~~~~la~~l~~~l~~~~~~~~~~~~~~~~~~  224 (589)
T d1dn1a_         158 KA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDKAR  224 (589)
T ss_dssp             GT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGG
T ss_pred             cc-chhhHHHHHHHHHHHHHHHHhCCCCeEEEcCCc------------hHHHHHHHHHHHHHHHHHhcCcccCCCcccCC
Confidence            32 234678999999999999999999999999885            35778899999999888766554432   346


Q ss_pred             eeEEEecCCCCccchhhhhhhhhHHHhhhcccCCCeEEEeecCCCCCCCcceEEecCCCChHHHHhhhccHHHHHHHHHH
Q 006024          253 CELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHE  332 (664)
Q Consensus       253 ~~LiIlDR~~D~iTPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~  332 (664)
                      ++|||+||++|++|||+|||||||||||+|||++|.|+++.+..  +..+.+++.++.+|++|.++||+||++|++.|.+
T Consensus       225 ~~LiIlDR~~DliTPLlh~~TYq~li~e~~gI~~n~v~i~~~~~--~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~i~~  302 (589)
T d1dn1a_         225 SQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGI--GEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTR  302 (589)
T ss_dssp             CEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECSS--SSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHHH
T ss_pred             ceEEEeccCccccccccccccHHHHHHHHhcccCCeEEecCCCC--CcccceEeecCCCcHHHHHhhcccHHHHHHHHHH
Confidence            89999999999999999999999999999999999999987422  2344678899999999999999999999999999


Q ss_pred             HHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhcCCC
Q 006024          333 KMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDA  412 (664)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~g~~  412 (664)
                      ++++++++++.       ...+..+++||+++|+++|+++++++.++.|++|+++|++.++ ++|.+++++||+|++|.+
T Consensus       303 ~~~~~~~~~~~-------~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~~~-~~l~~~~~~Eq~i~~~~~  374 (589)
T d1dn1a_         303 SLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMGTD  374 (589)
T ss_dssp             HHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHSBC
T ss_pred             HHHHHHHHhhh-------hccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCC
Confidence            99999876532       1223457789999999999999999999999999999999995 789999999999998753


Q ss_pred             c--------HHHHHHHhhhcCCCCchhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccccc
Q 006024          413 G--------FKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKS  484 (664)
Q Consensus       413 ~--------~~~~~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~  484 (664)
                      .        ...+++++. +..++.+|+|||+|||++++ +|+++++++++++..|++.+.+.++.+|+.+|....+...
T Consensus       375 ~~~~~~~~~~~~i~~~l~-~~~~~~~d~LRL~~l~~l~~-~g~~~~~~~~l~~~~~~~~~~~~~~~~l~~lg~~~~~~~~  452 (589)
T d1dn1a_         375 AEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDST  452 (589)
T ss_dssp             SSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCCG
T ss_pred             cchhhHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCChHHHHHHHHHHHhCCccccCch
Confidence            2        245677776 46789999999999999998 6899999999999999998999999999999977654321


Q ss_pred             cCCCCccchhhhhhhhhcccCCCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCccc
Q 006024          485 TIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAA  564 (664)
Q Consensus       485 ~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~~  564 (664)
                      .    .      +......+ ....+.+|+++||+|+++++++.+.++.++++.||++..+.....+.            
T Consensus       453 ~----~------~~~~~~~~-~~~~~~~~~~s~y~Pl~~~l~~~~~~~~l~~~~~p~~~~~~~~~~~~------------  509 (589)
T d1dn1a_         453 L----R------RRSKPERK-ERISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFST------------  509 (589)
T ss_dssp             G----G------CCCCCCCC-CCCCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC-------------------
T ss_pred             h----h------cccccccc-cCCcccccccccchHHHHHHHHHHHhCCCCcccCcccCCCccccccc------------
Confidence            0    0      01111111 13567889999999999999999999999999999986543221110            


Q ss_pred             ccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhCC-CeEEEccCcccChh
Q 006024          565 HSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN-REVVLGSSSLDDPP  643 (664)
Q Consensus       565 ~s~r~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTysEi~~l~~l~~~~~-~~iiigsT~I~~~~  643 (664)
                       +....+++.|.++....               ....++++||||||||||+|+++||+++++.+ ++|+||||+|+||+
T Consensus       510 -~~~~~~~~~~~~~~~~~---------------~~~~~~~viVF~vGGvTy~E~~~l~~l~~~~~~~~iiiGsT~iln~~  573 (589)
T d1dn1a_         510 -TAVSARYGHWHKNKAPG---------------EYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQ  573 (589)
T ss_dssp             -----------------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHH
T ss_pred             -cccccccccccccCCCC---------------cCCCCCEEEEEEECCcCHHHHHHHHHHHHHcCCceEEEEeCCEecHH
Confidence             01111123343322110               11357899999999999999999999988776 69999999999999


Q ss_pred             HHHHHHhccCCCC
Q 006024          644 QFITKLKMLTAHE  656 (664)
Q Consensus       644 ~fi~~l~~l~~~~  656 (664)
                      +|+++|.+|++++
T Consensus       574 ~fl~~l~~L~~~~  586 (589)
T d1dn1a_         574 KLLDTLKKLNKTD  586 (589)
T ss_dssp             HHHHHHTTTTSCS
T ss_pred             HHHHHHHHhCCcc
Confidence            9999999999876
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure