Citrus Sinensis ID: 006032


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660----
MGVSVSCPFAEYSDVESGLESVIVKSICFGDEEVKTPVRSVSFNSQDLEPTILKSLGCGKMVKERSVSFKECELEAMISRTSSLSSDKEKDESIRSIRIKVNEMDNQSPRSEDSMETIQQFPILDPNNPKHEAAIKLQKVYKSFRTRRKLADCAVIVEQSWWKLLDFAELKRSSISFFDIEKNETAISRWSRARTRAAKVGKGLSKNDRAQKLALQHWLEAIDPRHRYGHNLHFYYDKWLHSHSREPFFYWVDIGEGREVNLVDKCPRWKLHQQCIKYLGPMERKPYEVIVKDGKFFYKQSGLILDTNVDIDSKWIFVLSTTKSLYVGKKRKGTFQHSSFLAGGATTAAGRLVVESGVLKAVWPHSGHYRPTEQNFNDFISFLKENNVDLTDVKMSPVDAEEASDGKQRNSMHIRNHSSDEDLVQALDELETEENNVEDLSQDKTDSTKHETTPSKGLQKLDSFQKFSMKLPSIEVQKRSELLERPESNIPAFKPSSNNPSVESQMNVPGSVEGAYVSKPEIKNSKQELSNDEDAENEVEPVPEEAILQRINSRKGMKSYQLGKQLSCKWTTGAGPRIGCVRDYPCQLQFRALEQLNLSPTSAGYSRSRSSPHTIGRYNPLMPSPLHPHMKMEATVSLPVPGKGNSLIEAVRLCRTQSSPLEDQ
cccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccEEEEccccccccccccccHHHHHHHHHHcccccccccEEEEEcccEEEEcccccEEcccccccccEEEEEcccccEEEEcccccccccccccccccccEEEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHccccccccccccccccEEEcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccEEEEcccccccccHHHHccEEEEEEEccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHccccccccccHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccEEEEEEccccccccccccccHHHHHHHHHHHccHHHHHHEEEEEEccEEEEEEccEEEEcccccccEEEEEEEcccEEEEEEcccccEEcccHccccHHHEcEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHcccccccEEEccccccccccccccccccHHcccccccHHHHHcccccHcccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHHHHHHccccccHHHHccccccEEcccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mgvsvscpfaeysdvesGLESVIVKSIcfgdeevktpvrsvsfnsqdleptilkslgcgkmvkersvsfKECELEAMISRTsslssdkekdeSIRSIRIKVnemdnqsprsedsmetiqqfpildpnnpkhEAAIKLQKVYKSFRTRRKLADCAVIVEQSWWKLLDFAElkrssisffdieKNETAISRWSRARTRAAKVGKGLSKNDRAQKLALQHWLEAidprhryghnlhfyydkwlhshsrepffywvdigegrevnlvdkcprwkLHQQCIKYlgpmerkpyeVIVKDGKFfykqsglildtnvdidskWIFVLSTTKslyvgkkrkgtfqhssflaggattAAGRLVVESGVLkavwphsghyrpteqnFNDFISFLKennvdltdvkmspvdaeeasdgkqrnsmhirnhssdEDLVQALDELEteennvedlsqdktdstkhettpskglqkldsfqkfsmklpsIEVQKRsellerpesnipafkpssnnpsvesqmnvpgsvegayvskpeiknskqelsndedaenevepvpeeAILQRINsrkgmksyqlgkqlsckwttgagprigcvrdypcqlQFRALEQlnlsptsagysrsrssphtigrynplmpsplhphmkmeatvslpvpgkgnsLIEAVRLCrtqsspledq
mgvsvscpfaeysdvesgLESVIVKSICfgdeevktpvrsvsfnsqdleptilkslgcgkmVKERSVSFKECELEAMIsrtsslssdkekdesIRSIrikvnemdnqsprseDSMETIQQFPILDPNNPKHEAAIKLQKVYKSFRTRRKLADCAVIVEQSWWKLLDFAELKrssisffdieknetaisrwsraRTRAAkvgkglskndrAQKLALQHWLEAIDPRHRYGHNLHFYYDKWLHSHSREPFFYWVDIGEGREVNLVDKCPRWKLHQQCIkylgpmerkPYEVIVKDGKFFYKQSGLIldtnvdidskWIFVLSTtkslyvgkkRKGTFQHSSFLAGGATTAAGRLVVESGVLKAVWPHSGHYRPTEQNFNDFISFLKENNVDLTDVKMSPVDAeeasdgkqrnsmhirnhSSDEDLVQALDELETEEnnvedlsqdktdstkhettpskglqkldsfqkFSMKLPSIEVQKRsellerpesnipafkpssnnpsvesQMNVPGSVEGAYVSKpeiknskqelsndedaenevepvpeeaILQRINSRKGMKSYQLGKQLSCKWTTGAGPRIGCVRDYPCQLQFRALEQLNLSPTSAGYSRSRSSPHTIGRYNPLMPSPLHPHMKMEATVSLPVPGKGNSLIEAVRLcrtqsspledq
MGVSVSCPFAEYSDVESGLESVIVKSICFGDEEVKTPVRSVSFNSQDLEPTILKSLGCGKMVKERSVSFKECELEAMISRTsslssdkekdesIRSIRIKVNEMDNQSPRSEDSMETIQQFPILDPNNPKHEAAIKLQKVYKSFRTRRKLADCAVIVEQSWWKLLDFAELKRSSISFFDIEKNETAISRWSRARTRAAKVGKGLSKNDRAQKLALQHWLEAIDPRHRYGHNLHFYYDKWLHSHSREPFFYWVDIGEGREVNLVDKCPRWKLHQQCIKYLGPMERKPYEVIVKDGKFFYKQSGLILDTNVDIDSKWIFVLSTTKSLYVGKKRKGTFQHSSFLaggattaagRLVVESGVLKAVWPHSGHYRPTEQNFNDFISFLKENNVDLTDVKMSPVDAEEASDGKQRNSMHIRNHSSDEDLVQALDELETEENNVEDLSQDKTDSTKHETTPSKGLQKLDSFQKFSMKLPSIEVQKRSELLERPESNIPAFKPSSNNPSVESQMNVPGSVEGAYVSKPEIKNSKQELSndedaenevepvpeeaILQRINSRKGMKSYQLGKQLSCKWTTGAGPRIGCVRDYPCQLQFRALEQLNLSPTSAGYSRSRSSPHTIGRYNPLMPSPLHPHMKMEATVSLPVPGKGNSLIEAVRLCRTQSSPLEDQ
******CPFAEYSDVESGLESVIVKSICFGDEEVKTPVRSVSFNSQDLEPTILKSLGCGKMVKE**V*F***************************************************************AAIKLQKVYKSFRTRRKLADCAVIVEQSWWKLLDFAELKRSSISFFDIEKNETAISRWSRA****************AQKLALQHWLEAIDPRHRYGHNLHFYYDKWLHSHSREPFFYWVDIGEGREVNLVDKCPRWKLHQQCIKYLGPMERKPYEVIVKDGKFFYKQSGLILDTNVDIDSKWIFVLSTTKSLYVGKKRKGTFQHSSFLAGGATTAAGRLVVESGVLKAVWPHSGHYRPTEQNFNDFISFLKENNVDL*************************************************************************************************************************************************************************YQLGKQLSCKWTTGAGPRIGCVRDYPCQLQFRALEQL********************************************************************
MGVSVSCPFAEYSDVESGLESVIVKSI*************************************************************************************************************LQKVYKSFRTRRKLADCAVIVEQSWWKLLDFAEL************************************************LEAIDPRHRYGHNLHFYYDKWLHSHSREPFFYWVDIGEGREVNLVDK**********IKYLGPMERKPYEVIVKDGKFFYKQSGLIL*T*VDIDSKWIFVLSTTKSLYVGKKRKGTFQHSSFLAGGATTAAGRLVVESGVLKAVWPHSGHYRPTEQNFNDFISFLKENNVDLTDVKMSPVDAE***********************************************************************************************************************************************************************KWTTGAGPRIGCVRDYPCQLQFRAL***********************************************************************
MGVSVSCPFAEYSDVESGLESVIVKSICFGDEEVKTPVRSVSFNSQDLEPTILKSLGCGKMVKERSVSFKECELEAMI***************IRSIRIKVNEM************TIQQFPILDPNNPKHEAAIKLQKVYKSFRTRRKLADCAVIVEQSWWKLLDFAELKRSSISFFDIEKNETAISRWSRARTRAAKVGKGLSKNDRAQKLALQHWLEAIDPRHRYGHNLHFYYDKWLHSHSREPFFYWVDIGEGREVNLVDKCPRWKLHQQCIKYLGPMERKPYEVIVKDGKFFYKQSGLILDTNVDIDSKWIFVLSTTKSLYVGKKRKGTFQHSSFLAGGATTAAGRLVVESGVLKAVWPHSGHYRPTEQNFNDFISFLKENNVDLTDVKMSP***************HIRNHSSDEDLVQALDELE************************KGLQKLDSFQKFSMKLPSIEVQKRSELLERPESNIPAFKPSS***********PGSVEGAYVSKPEIK*****************PVPEEAILQRINSRKGMKSYQLGKQLSCKWTTGAGPRIGCVRDYPCQLQFRALEQLNLSP************HTIGRYNPLMPSPLHPHMKMEATVSLPVPGKGNSLIEAVRLCRT********
*GVSVSCPFAEYSDVESGLESVIVKSICFGDEEVKT*************PTIL****CGKMVKERSVSFKECELEA**************************************************NNPKHEAAIKLQKVYKSFRTRRKLADCAVIVEQSWWKLLDFAELKRSSISFFDIEKNETAISRWSRARTRAAKVGKGLSKNDRAQKLALQHWLEAIDPRHRYGHNLHFYYDKWLHSHSREPFFYWVDIGEGREVNLVDKCPRWKLHQQCIKYLGPMERKPYEVIVKDGKFFYKQSGLILDTNVDIDSKWIFVLSTTKSLYVGKKRKGTFQHSSFLAGGATTAAGRLVVESGVLKAVWPHSGHYRPTEQNFNDFISFLKENNVDLTDVKMSPV*********************************************************************************************************************************************EPVPEEAILQRINSRKGMKSYQLGKQLSCKWTTGAGPRIGCVRDYPCQLQFRALEQLNLS********************PLMPSPLHPHMKMEATVSLPVPGKGNSL*****************
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MGVSVSCPFAEYSDVESGLESVIVKSICFGDEEVKTPVRSVSFNSQDLEPTILKSLGCGKMVKERSVSFKECELEAMISRTSSLSSDKEKDESIRSIRIKVNEMDNQSPRSEDSMETIQQFPILDPNNPKHEAAIKLQKVYKSFRTRRKLADCAVIVEQSWWKLLDFAELKRSSISFFDIEKNETAISRWSRARTRAAKVGKGLSKNDRAQKLALQHWLEAIDPRHRYGHNLHFYYDKWLHSHSREPFFYWVDIGEGREVNLVDKCPRWKLHQQCIKYLGPMERKPYEVIVKDGKFFYKQSGLILDTNVDIDSKWIFVLSTTKSLYVGKKRKGTFQHSSFLAGGATTAAGRLVVESGVLKAVWPHSGHYRPTEQNFNDFISFLKENNVDLTDVKMSPVDAEEASDGKQRNSMHIRNHSSDEDxxxxxxxxxxxxxxxxxxxxxKTDSTKHETTPSKGLQKLDSFQKFSMKLPSIEVQKRSELLERPESNIPAFKPSSNNPSVESQMNVPGSVEGAYVSKPEIKNSKQELSNDEDAENEVEPVPEEAILQRINSRKGMKSYQLGKQLSCKWTTGAGPRIGCVRDYPCQLQFRALEQLNLSPTSAGYSRSRSSPHTIGRYNPLMPSPLHPHMKMEATVSLPVPGKGNSLIEAVRLCRTQSSPLEDQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query664
255582552638 calmodulin binding protein, putative [Ri 0.921 0.959 0.649 0.0
356510953656 PREDICTED: uncharacterized protein LOC10 0.900 0.911 0.641 0.0
356528314661 PREDICTED: uncharacterized protein LOC10 0.903 0.907 0.642 0.0
357518881659 Calmodulin binding protein [Medicago tru 0.899 0.905 0.626 0.0
225435735645 PREDICTED: uncharacterized protein LOC10 0.942 0.970 0.583 0.0
15231294605 calmodulin-binding protein-like protein 0.888 0.975 0.612 0.0
449448838615 PREDICTED: uncharacterized protein LOC10 0.911 0.983 0.599 0.0
449442733618 PREDICTED: uncharacterized protein LOC10 0.885 0.951 0.602 0.0
449528639625 PREDICTED: uncharacterized protein LOC10 0.887 0.942 0.601 0.0
297746456582 unnamed protein product [Vitis vinifera] 0.847 0.967 0.553 0.0
>gi|255582552|ref|XP_002532059.1| calmodulin binding protein, putative [Ricinus communis] gi|223528263|gb|EEF30314.1| calmodulin binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/644 (64%), Positives = 493/644 (76%), Gaps = 32/644 (4%)

Query: 1   MGVSVSCPFAEYSDVESGLESVIVKSICFGDEEVKTPVRSVSFNSQDLEPTILKSLGCGK 60
           MG+  SCPFAEY D E+ LESV VKSI F D E KTP RS+SF SQDLEP ILKSLG GK
Sbjct: 1   MGILFSCPFAEYGDFENALESVTVKSISF-DHEAKTPARSISFGSQDLEPLILKSLGSGK 59

Query: 61  MVKERSVSFKECELEAMISRTSSLSSDKEKDESIRSIRIKVNEMDNQSPRSEDSMETIQQ 120
           M+ ERSVSFK  ELE M+SR    +SDKEKD +  S+     E D++S      ++ IQ+
Sbjct: 60  MIVERSVSFKGGELEKMMSRRDP-ASDKEKDAT--SVSEYTTESDSESQNLNSDIQMIQK 116

Query: 121 FPILDPNNPKHEAAIKLQKVYKSFRTRRKLADCAVIVEQSWWKLLDFAELKRSSISFFDI 180
             I DP+NPKH+AA+KLQKVYKSFRTRRKLADCAV+VEQSWWKLLDFAELK SSISFFDI
Sbjct: 117 SQIFDPSNPKHQAAVKLQKVYKSFRTRRKLADCAVLVEQSWWKLLDFAELKHSSISFFDI 176

Query: 181 EKNETAISRWSRARTRAAKVGKGLSKNDRAQKLALQHWLEAIDPRHRYGHNLHFYYDKWL 240
           EK+ETAISRWSRARTRAAKVGKGLSKND+AQKLALQHWLEAIDPRHRYGHNLHFYY  WL
Sbjct: 177 EKHETAISRWSRARTRAAKVGKGLSKNDKAQKLALQHWLEAIDPRHRYGHNLHFYYVNWL 236

Query: 241 HSHSREPFFYWVDIGEGREVNLVDKCPRWKLHQQCIKYLGPMERKPYEVIVKDGKFFYKQ 300
           HS SREPFFYW+DIGEG+EVNL +KCPR KL QQCIKYLGPMERK YEV+V +GKF YKQ
Sbjct: 237 HSKSREPFFYWLDIGEGKEVNL-EKCPRLKLQQQCIKYLGPMERKCYEVVVDEGKFIYKQ 295

Query: 301 SGLILDTNVDIDSKWIFVLSTTKSLYVGKKRKGTFQHSSFLAGGATTAAGRLVVESGVLK 360
           +G IL T    D+KWIFVLST+K+LYVGKK+KGTFQHSSFLAGG TTAAGRL+VESG+LK
Sbjct: 296 TGEILHTTS--DAKWIFVLSTSKTLYVGKKKKGTFQHSSFLAGGVTTAAGRLIVESGILK 353

Query: 361 AVWPHSGHYRPTEQNFNDFISFLKENNVDLTDVKMSPVDAEEASDGKQRNSMHIRNHSSD 420
           AVWPHSGHYRPTE+NF DF+SFL+ENNVDLTDVK +P+D E+ SD K R+S H+R+HSS+
Sbjct: 354 AVWPHSGHYRPTEENFKDFLSFLRENNVDLTDVKTNPIDEEDGSD-KPRSSRHLRSHSSE 412

Query: 421 EDLVQALDELETEENNVEDLSQDKTDSTKHETTPSKGLQKLDSFQKFSMKLPSIEVQKRS 480
           EDL+Q +++LE EE++  DL +D +D+   E  P +          FS KL S+E+ +R 
Sbjct: 413 EDLIQTVNDLEIEESS--DLIKDNSDAALEEQKPGR-------LHNFSRKLTSLEIPERE 463

Query: 481 ELLERPESNIPAFKPSSNNPSVESQMNVPGSVEGAYVSKPEIKNSKQELSNDEDAENEVE 540
           ELL+  ES      P+ NN S +     P   +G   +  +++  K    N ED  NEVE
Sbjct: 464 ELLKSLESESLTADPNGNNVSAD-----PLVADGYKPADEKLQ--KNLFENQED--NEVE 514

Query: 541 PVPEEAILQRINSRKGMKSYQLGKQLSCKWTTGAGPRIGCVRDYPCQLQFRALEQLNLSP 600
            +PEEAILQRINS+KGM+SYQLG+QLSCKWTTGAGPRIGCVRDYP +LQFRALEQ+NLSP
Sbjct: 515 DIPEEAILQRINSKKGMESYQLGRQLSCKWTTGAGPRIGCVRDYPSELQFRALEQVNLSP 574

Query: 601 TSAGYSRSRSSPHTIGRYNPLMPSPLHPHMKMEATVSLPVPGKG 644
               +SRS      I  ++  M +P+    +  ATV+   P KG
Sbjct: 575 RRIAHSRS------INTFSQKMCTPMGFSGETAATVASAKPEKG 612




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510953|ref|XP_003524197.1| PREDICTED: uncharacterized protein LOC100803297 [Glycine max] Back     alignment and taxonomy information
>gi|356528314|ref|XP_003532749.1| PREDICTED: uncharacterized protein LOC100782887 [Glycine max] Back     alignment and taxonomy information
>gi|357518881|ref|XP_003629729.1| Calmodulin binding protein [Medicago truncatula] gi|355523751|gb|AET04205.1| Calmodulin binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225435735|ref|XP_002283551.1| PREDICTED: uncharacterized protein LOC100250050 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15231294|ref|NP_187969.1| calmodulin-binding protein-like protein [Arabidopsis thaliana] gi|11994562|dbj|BAB02602.1| unnamed protein product [Arabidopsis thaliana] gi|332641860|gb|AEE75381.1| calmodulin-binding protein-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449448838|ref|XP_004142172.1| PREDICTED: uncharacterized protein LOC101218379 [Cucumis sativus] gi|449521914|ref|XP_004167974.1| PREDICTED: uncharacterized protein LOC101230380 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449442733|ref|XP_004139135.1| PREDICTED: uncharacterized protein LOC101218995 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449528639|ref|XP_004171311.1| PREDICTED: uncharacterized protein LOC101230841 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297746456|emb|CBI16512.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query664
TAIR|locus:2086819605 AT3G13600 "AT3G13600" [Arabido 0.856 0.940 0.559 6.5e-188
TAIR|locus:2057765532 AT2G26190 "AT2G26190" [Arabido 0.643 0.802 0.478 4.8e-114
TAIR|locus:2076421575 AT3G58480 "AT3G58480" [Arabido 0.691 0.798 0.5 9.7e-112
TAIR|locus:2123817526 EDA39 "AT4G33050" [Arabidopsis 0.328 0.414 0.544 4.5e-111
TAIR|locus:2164655495 AT5G57010 "AT5G57010" [Arabido 0.435 0.583 0.566 5.7e-107
TAIR|locus:2085161456 AT3G52870 "AT3G52870" [Arabido 0.522 0.760 0.467 2.2e-82
TAIR|locus:2086819 AT3G13600 "AT3G13600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1587 (563.7 bits), Expect = 6.5e-188, Sum P(2) = 6.5e-188
 Identities = 339/606 (55%), Positives = 422/606 (69%)

Query:    48 LEPTILKSLGCGK----MVKERSVSFKECELEAMISRTXXXXXXXXXXX-XIRSIRIKVN 102
             L+   +KS+  G        +RSV+F +  LE  I ++             ++ ++++  
Sbjct:    19 LDSVTVKSISFGDDDECKTPKRSVNFNDGTLEPTILKSMGSGKMVVEKSVSLKGMQLERM 78

Query:   103 EMDNQSPRSEDSMETIQQFPILDPNNPKHEAAIKLQKVYKSFRTRRKLADCAVIVEQSWW 162
                N+S + ++  E  ++F +LDP NPKHEAAIKLQKVYKSFRTRRKLADCAV+VEQSWW
Sbjct:    79 ISLNRSVK-DNGFEIAKEFSVLDPRNPKHEAAIKLQKVYKSFRTRRKLADCAVLVEQSWW 137

Query:   163 KLLDFAELKRSSISFFDIEKNETAISRWSRARTRAAKVGKGLSKNDRAQKLALQHWLEAI 222
             KLLDFAELKRSSISFFDIEK+ETAISRWSRARTRAAKVGKGLSKN +AQKLALQHWLEAI
Sbjct:   138 KLLDFAELKRSSISFFDIEKHETAISRWSRARTRAAKVGKGLSKNGKAQKLALQHWLEAI 197

Query:   223 DPRHRYGHNLHFYYDKWLHSHSREPFFYWVDIGEGREVNLVDKCPRWKLHQQCIKYLGPM 282
             DPRHRYGHNLHFYY+KWLH  SREPFFYW+DIGEG+EVNLV+KCPR KL QQCIKYLGPM
Sbjct:   198 DPRHRYGHNLHFYYNKWLHCQSREPFFYWLDIGEGKEVNLVEKCPRLKLQQQCIKYLGPM 257

Query:   283 ERKPYEVIVKDGKFFYKQSGLILDTN--VDIDSKWIFVLSTTKSLYVGKKRKGTFQHSSF 340
             ERK YEV+V+DGKFFYK SG IL T+   D +SKWIFVLST+K LYVGKK+KGTFQHSSF
Sbjct:   258 ERKAYEVVVEDGKFFYKHSGEILQTSDMEDSESKWIFVLSTSKVLYVGKKKKGTFQHSSF 317

Query:   341 LXXXXXXXXXRLVVESGVLKAVWPHSGHYRPTEQNFNDFISFLKENNVDLTDVKMSPVDA 400
             L         RLVVE+GVLKAVWPHSGHY+PTE+NF DF+SFL+EN+VD+TDVKMSP D 
Sbjct:   318 LAGGATVAAGRLVVENGVLKAVWPHSGHYQPTEENFMDFLSFLRENDVDITDVKMSPTDE 377

Query:   401 EEASDGKQRNSMHIRNHSSDEDLVQALDELETEENNVEDLSQDKT----DSTKHETTPSK 456
             +E S  KQR S H+RNHS +EDL +A ++  + ++ V+   +++T    +S   + +  +
Sbjct:   378 DEFSIYKQR-STHMRNHSLEEDL-EA-EKTISFQDKVDPSGEEQTLMRNESISRKQSDLE 434

Query:   457 GLQKLDSFQKFSMKLPSIEVQKRSELLERPESNIPAFKPSSNNPSVESQMNVPGSVEGAY 516
               +K++SF  F  ++ S+   K +++ E  +S         ++   E +M      E   
Sbjct:   435 TPEKMESFSTFGDEIQSVG-SKSTKVSEDYDSG--------DDEEEEEEM-----FELEQ 480

Query:   517 VSKPEIKNSK--QELSXXXXXXXXXXXXXXXXILQRINSRKGMKSYQLGKQLSCKWTTGA 574
              S P  ++S   +E                  IL+RINS+K  KS+QLGKQLSCKWTTGA
Sbjct:   481 ESMPSEQSSPRGEEKEEGETKESEVVKITEESILKRINSKKETKSFQLGKQLSCKWTTGA 540

Query:   575 GPRIGCVRDYPCQLQFRALEQLNLSPTSAGYSRS--RSSPHTIGRYNPLMPSPLHPHMKM 632
             GPRIGCVRDYP +LQF+ALEQ+NLSP SA  SR    SS  T     P M SPL   M +
Sbjct:   541 GPRIGCVRDYPSELQFQALEQVNLSPRSASVSRLCFSSSSQT---QTPQM-SPLWRGMSL 596

Query:   633 EATVSL 638
                ++L
Sbjct:   597 PTDITL 602


GO:0005516 "calmodulin binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2057765 AT2G26190 "AT2G26190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076421 AT3G58480 "AT3G58480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123817 EDA39 "AT4G33050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164655 AT5G57010 "AT5G57010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085161 AT3G52870 "AT3G52870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 664
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 95.42
smart0001526 IQ Short calmodulin-binding motif containing conse 92.9
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
Probab=95.42  E-value=0.01  Score=39.47  Aligned_cols=20  Identities=25%  Similarity=0.564  Sum_probs=17.9

Q ss_pred             hHHHHHHHHhhhhhhhhhcc
Q 006032          131 HEAAIKLQKVYKSFRTRRKL  150 (664)
Q Consensus       131 ~~AA~~iQk~Yr~yRtRR~L  150 (664)
                      +.||++||+.||+|..|+++
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhc
Confidence            35999999999999999875



The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query664
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 69.1 bits (168), Expect = 3e-12
 Identities = 82/550 (14%), Positives = 164/550 (29%), Gaps = 172/550 (31%)

Query: 46  QDLEPTILKSLGCGKMVKE--RSVSFKECELEAMISRTSSLSSDKEKDESIRSIRIKVNE 103
              E   + +  C K V++  +S+   + E++ +I           KD    ++R+    
Sbjct: 23  SVFEDAFVDNFDC-KDVQDMPKSI-LSKEEIDHII---------MSKDAVSGTLRLFWTL 71

Query: 104 MDNQSPRSEDSMETIQQF--PILDPNNPKHEAAIKLQKVYKSFRTRRKLADCAVIVEQSW 161
           +  Q        E +Q+F   +L  N     + IK ++   S  TR              
Sbjct: 72  LSKQE-------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM------------- 111

Query: 162 WKLLDFAELKRSSISFFDIEKNETAISRWSRARTRAAKVGKGLSKND--RAQK-LALQHW 218
                                       +   R R     +  +K +  R Q  L L+  
Sbjct: 112 ----------------------------YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 219 LEAIDPRHRY---------GHNLHFYYDKW------LHSHSREPFF----YWVDIGEGRE 259
           L  + P  +          G        K         S+  +       +W+++     
Sbjct: 144 LLELRP-AKNVLIDGVLGSG--------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 260 VNLVDKCPRWKLHQQCIKYLG----PMERKPYEV-IVKDGK--FF----YKQSGLILDTN 308
              V +    KL  Q                  +  ++           Y+   L+L   
Sbjct: 195 PETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-- 251

Query: 309 VDIDSKWIF--------VLSTTKSLYVGKKRKGTFQHSSFLAGGATTAAGRLVVESGVLK 360
            ++ +   +        +L TT+   V          + FL+   TT    + ++     
Sbjct: 252 -NVQNAKAWNAFNLSCKILLTTRFKQV----------TDFLSAATTT---HISLD----- 292

Query: 361 AVWPHSGHYRPTEQNFNDFISFLKENNVDL--TDVKMSP----VDAEEASDGKQR--NSM 412
               HS    P E   +  + +L     DL    +  +P    + AE   DG     N  
Sbjct: 293 ---HHSMTLTPDE-VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 413 HIRNHSSDEDLVQALDELETEE--NNVEDLS--QDKTDSTKHETTPSKGLQKL--DSFQK 466
           H+        +  +L+ LE  E     + LS              P+  L  +  D  + 
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH------IPTILLSLIWFDVIKS 402

Query: 467 FSMKLPSIEVQKRSELLERPESN---IPAF-----KPSSNNPSVESQM----NVPGSVEG 514
             M + + ++ K S + ++P+ +   IP+          N  ++   +    N+P + + 
Sbjct: 403 DVMVVVN-KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 515 AYVSKPEIKN 524
             +  P +  
Sbjct: 462 DDLIPPYLDQ 471


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query664
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 94.97
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 94.74
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 90.27
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 88.99
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
Probab=94.97  E-value=0.013  Score=42.60  Aligned_cols=23  Identities=17%  Similarity=0.387  Sum_probs=19.9

Q ss_pred             hhHHHHHHHHhhhhhhhhhccCC
Q 006032          130 KHEAAIKLQKVYKSFRTRRKLAD  152 (664)
Q Consensus       130 ~~~AA~~iQk~Yr~yRtRR~Lad  152 (664)
                      .+.||+.||+.||+|+-||.+..
T Consensus         5 Ee~aA~vIQrA~R~yl~rr~~~~   27 (31)
T 2l53_B            5 EEVSAMVIQRAFRRHLLQRSLKH   27 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc
Confidence            44599999999999999998764



>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00