Citrus Sinensis ID: 006042

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660---
MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVPLPN
cHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccccccccccccccccccccEEEEcccccHHHHcccccccccccHHHHHHHHHHccccccccHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccEEcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccEEEEEcccEEccccccccHHHHHHHHHHHHHccccc
cHHHHHHHHHHHcccccccccccccHcccccHEEEEEHHccccccccHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccEEcccHHHHHHHHHccEEcccccccccHHHEcccccccccccEEEEEEEEEccHHHHHcccccccccHHHHHHHHHHccccHHcccHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHcccccHHHHHHHHHcccHEEEEccccEEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccHHHccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHccHHHHHccEEEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccEEEcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHccccccEccHHHHcHHHHHHHHHHHHcccccc
MKRAAHYFSAiqasdghwpaenagpmyflppFVFCLYITGHLNTVFTVEHRREILRYLYNhqhedggwgvhveapssmfgTVFSYLCMRLlglgpndgenNACARARKWIrdhggvtyipswgkNWLSILGIFewsgtnpmppefwilpsfvplhpskmwcycrlvympvsylygkrfvgpitPLIQQLREELhtqpyneinWRKVRHLcskedlyyphpfvqELLWDTLYlaseplltrwplNKLIRQKALKETMKFIhyedhnsryitigcvekplcmlacwvedpngiafKKHLNRIADYIWlgedgmkvqtfgsqTWDTALGLQALMACNIADEVESVLGkghdylkkaqirdnpvgdykgnfrhfskgawtfsdqdhgwqvsdctaeGLKCVlqlslmppeivgekmeperLYDAVNFLLSLqdektgglAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYiedeqtadgswygnwgICFIYGtcfalgglqvagktYNNCLAIRRAVDFLLNaqsddggwgesykscpnkiytplegkrstVVHTALAVLSLIsagqadrdptpihRGVKLLINsqlengdfpqqeIMGVFMRNCMLHYAEYRNIFPLRALAeyrkrvplpn
MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSddggwgesykscPNKIYTPLEGKRSTVVHTALAVLSLisagqadrdptPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVPLPN
MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVPLPN
******YFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYR*******
MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSL********KMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVPLP*
MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVPLPN
MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVPL**
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ooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVPLPN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query663 2.2.26 [Sep-21-2011]
Q8W3Z1779 Beta-amyrin synthase OS=B N/A no 0.996 0.848 0.723 0.0
A8CDT2759 Beta-amyrin synthase OS=B N/A no 0.998 0.872 0.723 0.0
Q9MB42765 Beta-amyrin synthase OS=G N/A no 0.998 0.865 0.716 0.0
O82140763 Beta-Amyrin Synthase 1 OS N/A no 0.996 0.866 0.713 0.0
E2IUA6779 Taraxerol synthase OS=Kal N/A no 0.996 0.848 0.709 0.0
A8C980759 Germanicol synthase OS=Rh N/A no 0.998 0.872 0.713 0.0
O82146761 Beta-Amyrin Synthase 2 OS N/A no 0.996 0.868 0.713 0.0
E2IUA9765 Lupeol synthase OS=Kalanc N/A no 0.995 0.862 0.700 0.0
Q9LRH8758 Beta-amyrin synthase OS=P N/A no 0.996 0.872 0.708 0.0
E7DN63761 Beta-amyrin synthase OS=S N/A no 0.995 0.867 0.708 0.0
>sp|Q8W3Z1|BAMS_BETPL Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1 Back     alignment and function desciption
 Score = 1065 bits (2754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/662 (72%), Positives = 567/662 (85%), Gaps = 1/662 (0%)

Query: 1   MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYN 60
           ++RA H++SA+QASDGHWPAENAGP++FLPP V C+YITGHLNTVF  EH++EILRY+Y 
Sbjct: 98  LRRAVHFYSALQASDGHWPAENAGPLFFLPPLVMCMYITGHLNTVFPAEHQKEILRYIYY 157

Query: 61  HQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIP 120
           HQ+EDGGWG+H+E  S+MF T  SY+CMR+LG GP+ G++NACARARKWI DHGGVT++P
Sbjct: 158 HQNEDGGWGLHIEGHSTMFCTALSYICMRILGEGPDGGQDNACARARKWILDHGGVTHMP 217

Query: 121 SWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVG 180
           SWGK WLSILGIFEW G+NPMPPEFWILPSF+P+HP+KMWCYCR+VYMP+SYLYGKRFVG
Sbjct: 218 SWGKTWLSILGIFEWIGSNPMPPEFWILPSFLPMHPAKMWCYCRMVYMPMSYLYGKRFVG 277

Query: 181 PITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTR 240
           PITPLI QLREEL+TQPY+++NW+KVRHLC+KED+YYPHP +Q+LLWD+LY+ +EPLLTR
Sbjct: 278 PITPLILQLREELYTQPYHQVNWKKVRHLCAKEDIYYPHPLIQDLLWDSLYIFTEPLLTR 337

Query: 241 WPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRI 300
           WP NKL+R+KAL+ TMK IHYED NSRYITIGCVEK LCMLACWVEDPNG  FKKH+ RI
Sbjct: 338 WPFNKLVREKALQVTMKHIHYEDENSRYITIGCVEKVLCMLACWVEDPNGDYFKKHIARI 397

Query: 301 ADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPV 360
            DYIW+ EDG+K+Q+FGSQ WDT   +QAL+A N+ DE+   L +GHD++KK+Q++DNP 
Sbjct: 398 PDYIWVAEDGIKMQSFGSQEWDTGFAIQALLASNLTDEIGPTLARGHDFIKKSQVKDNPS 457

Query: 361 GDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDA 420
           GD++   RH SKG+WTFSDQDHGWQVSDCTAEGLKC L  S+MPPEIVGEKMEPE+LYD+
Sbjct: 458 GDFESMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFSIMPPEIVGEKMEPEQLYDS 517

Query: 421 VNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFK 480
           VN LLSLQ  K GGLA WE AGA   LE LN  EF  D+++EH Y+ECTASA++  +LFK
Sbjct: 518 VNVLLSLQS-KNGGLAAWEPAGAQEWLELLNSTEFFADIVIEHEYIECTASAMQTLVLFK 576

Query: 481 KLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNN 540
           KLYP HRKKEIENFI  A  +++  Q  DGSWYGNWG+CF YGT FALGGL   GKTYNN
Sbjct: 577 KLYPGHRKKEIENFIKNAAQFLQVIQMPDGSWYGNWGVCFTYGTWFALGGLAAVGKTYNN 636

Query: 541 CLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQAD 600
           CLA+RRAVDFLL AQ D+GGWGESY SCP K Y PLEG +S +VHTA A++ LI AGQA+
Sbjct: 637 CLAVRRAVDFLLRAQRDNGGWGESYLSCPKKEYVPLEGNKSNLVHTAWAMMGLIHAGQAE 696

Query: 601 RDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVP 660
           RDPTP+HR  KL+INSQLE+GDFPQQEI GVFM+NCMLHYA Y+NI+PL ALAEYRK VP
Sbjct: 697 RDPTPLHRAAKLIINSQLEDGDFPQQEITGVFMKNCMLHYAAYKNIYPLWALAEYRKHVP 756

Query: 661 LP 662
           LP
Sbjct: 757 LP 758
Oxidosqualene cyclase converting oxidosqualene into beta-amyrin, generating five rings and eight asymmetric centers in a single transformation.
Betula platyphylla (taxid: 78630)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 3EC: 9
>sp|A8CDT2|BAS_BRUGY Beta-amyrin synthase OS=Bruguiera gymnorhiza GN=BAS PE=1 SV=1 Back     alignment and function description
>sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase OS=Glycyrrhiza glabra GN=GgbAS1 PE=1 SV=1 Back     alignment and function description
>sp|O82140|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1 Back     alignment and function description
>sp|E2IUA6|TARS_KALDA Taraxerol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|A8C980|GERS_RHISY Germanicol synthase OS=Rhizophora stylosa GN=M1 PE=1 SV=1 Back     alignment and function description
>sp|O82146|BAMS2_PANGI Beta-Amyrin Synthase 2 OS=Panax ginseng GN=OSCPNY2 PE=2 SV=1 Back     alignment and function description
>sp|E2IUA9|LUPS_KALDA Lupeol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|Q9LRH8|BAMS_PEA Beta-amyrin synthase OS=Pisum sativum GN=OSCPSY PE=2 SV=1 Back     alignment and function description
>sp|E7DN63|BAMS_SOLLC Beta-amyrin synthase OS=Solanum lycopersicum GN=TTS1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query663
443299067760 beta amyrn synthase [Azadirachta indica] 0.998 0.871 0.858 0.0
73991374762 beta-amyrin synthase [Euphorbia tirucall 0.998 0.868 0.726 0.0
224122726762 predicted protein [Populus trichocarpa] 0.998 0.868 0.716 0.0
75248718 779 RecName: Full=Beta-amyrin synthase gi|18 0.996 0.848 0.723 0.0
300431227763 beta-amyrin synthase [Aralia elata] 0.996 0.866 0.728 0.0
225443446757 PREDICTED: beta-amyrin synthase [Vitis v 0.995 0.871 0.735 0.0
353678016759 RecName: Full=Beta-amyrin synthase; Shor 0.998 0.872 0.723 0.0
357467673762 Beta-amyrin synthase [Medicago truncatul 0.998 0.868 0.720 0.0
118582586762 beta-amyrin synthase [Polygala tenuifoli 0.998 0.868 0.723 0.0
297735720 846 unnamed protein product [Vitis vinifera] 0.990 0.776 0.734 0.0
>gi|443299067|gb|AGC82084.1| beta amyrn synthase [Azadirachta indica] Back     alignment and taxonomy information
 Score = 1237 bits (3201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/663 (85%), Positives = 623/663 (93%), Gaps = 1/663 (0%)

Query: 1   MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYN 60
           MKRAAHYFSAIQASDGHWPAEN+GPMYFLPPFVFCLYITGHL+TVFT  HRRE+LRYLYN
Sbjct: 99  MKRAAHYFSAIQASDGHWPAENSGPMYFLPPFVFCLYITGHLDTVFTAAHRREVLRYLYN 158

Query: 61  HQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIP 120
           HQHEDGGWG+H+EAPSSMFGTV+SYL MRLLGLGPNDGENNACARARKWIRD+GGVTYIP
Sbjct: 159 HQHEDGGWGIHIEAPSSMFGTVYSYLTMRLLGLGPNDGENNACARARKWIRDNGGVTYIP 218

Query: 121 SWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVG 180
           SWGKNWLSILG+FEW+GT+PMPPEFW+LPS  PLHP++MWC+CRLVYMP+ YLYGKRFVG
Sbjct: 219 SWGKNWLSILGLFEWAGTHPMPPEFWMLPSHFPLHPAQMWCFCRLVYMPLCYLYGKRFVG 278

Query: 181 PITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTR 240
           PITPLI+QLREELHT+PY++INWRKVRH C+K DLYYPHPFVQE+LWDTLY A+EPLLTR
Sbjct: 279 PITPLIKQLREELHTEPYDKINWRKVRHQCAKTDLYYPHPFVQEVLWDTLYFATEPLLTR 338

Query: 241 WPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRI 300
           WPLNK +R+KALK+TMK IHYED +SRYITIGCVEKPLCMLACWVEDP G+AFKKHL RI
Sbjct: 339 WPLNKYVREKALKQTMKIIHYEDQSSRYITIGCVEKPLCMLACWVEDPEGVAFKKHLERI 398

Query: 301 ADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPV 360
           AD+IW+GEDGMKVQTFGSQTWDTALGLQAL+ACNI DE+   L KGHDYLKKAQ+RDNPV
Sbjct: 399 ADFIWIGEDGMKVQTFGSQTWDTALGLQALLACNIVDEIGPALAKGHDYLKKAQVRDNPV 458

Query: 361 GDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDA 420
           GDY  NFRHFSKGAWTFSDQDHGWQVSDCTAE LKC L  S++PPEIVGEK +PERLY+A
Sbjct: 459 GDYTSNFRHFSKGAWTFSDQDHGWQVSDCTAESLKCCLHFSMLPPEIVGEKHDPERLYEA 518

Query: 421 VNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFK 480
           VNF+LSLQD K GG+AVWE+AGASL+LEWLNPVEFLEDLIVEHTYVECTASAIEAF++FK
Sbjct: 519 VNFILSLQD-KNGGIAVWEKAGASLMLEWLNPVEFLEDLIVEHTYVECTASAIEAFVMFK 577

Query: 481 KLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNN 540
           KLYPHHRKKEIENF+VKAV YIE+EQTADGSWYGNWG+CF+YGTCFALGGL  AGKTYNN
Sbjct: 578 KLYPHHRKKEIENFLVKAVQYIENEQTADGSWYGNWGVCFLYGTCFALGGLHAAGKTYNN 637

Query: 541 CLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQAD 600
           CLAIRRAV+FLL AQSDDGGWGESYKSCP+KIY PL+GKRSTVVHTALA+  LI AGQ +
Sbjct: 638 CLAIRRAVEFLLQAQSDDGGWGESYKSCPSKIYVPLDGKRSTVVHTALAIFGLIHAGQVE 697

Query: 601 RDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVP 660
           RDPT IHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYA+YRNIFPL ALAE R++VP
Sbjct: 698 RDPTSIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAQYRNIFPLWALAECRRKVP 757

Query: 661 LPN 663
           LPN
Sbjct: 758 LPN 760

Source: Azadirachta indica

Species: Azadirachta indica

Genus: Azadirachta

Family: Meliaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|73991374|dbj|BAE43642.1| beta-amyrin synthase [Euphorbia tirucalli] Back     alignment and taxonomy information
>gi|224122726|ref|XP_002330453.1| predicted protein [Populus trichocarpa] gi|222871865|gb|EEF08996.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|75248718|sp|Q8W3Z1.1|BAMS_BETPL RecName: Full=Beta-amyrin synthase gi|18147596|dbj|BAB83088.1| beta-amyrin synthase [Betula platyphylla] Back     alignment and taxonomy information
>gi|300431227|gb|ADK12003.1| beta-amyrin synthase [Aralia elata] Back     alignment and taxonomy information
>gi|225443446|ref|XP_002270934.1| PREDICTED: beta-amyrin synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|353678016|sp|A8CDT2.1|BAS_BRUGY RecName: Full=Beta-amyrin synthase; Short=BgbAS gi|157679391|dbj|BAF80443.1| beta amyrin synthase [Bruguiera gymnorhiza] Back     alignment and taxonomy information
>gi|357467673|ref|XP_003604121.1| Beta-amyrin synthase [Medicago truncatula] gi|27475608|emb|CAD23247.1| beta-amyrin synthase [Medicago truncatula] gi|355505176|gb|AES86318.1| Beta-amyrin synthase [Medicago truncatula] Back     alignment and taxonomy information
>gi|118582586|gb|ABL07607.1| beta-amyrin synthase [Polygala tenuifolia] Back     alignment and taxonomy information
>gi|297735720|emb|CBI18407.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query663
UNIPROTKB|Q8W3Z1779 OSCBPY "Beta-amyrin synthase" 0.996 0.848 0.723 4.9e-291
UNIPROTKB|A8CDT2759 BAS "Beta-amyrin synthase" [Br 0.998 0.872 0.723 9.1e-290
UNIPROTKB|E2IUA6779 E2IUA6 "Taraxerol synthase" [K 0.996 0.848 0.709 6.1e-284
UNIPROTKB|E2IUA9765 E2IUA9 "Lupeol synthase" [Kala 0.995 0.862 0.700 2.5e-280
UNIPROTKB|E2IUA8767 E2IUA8 "Friedelin synthase" [K 0.989 0.855 0.695 8.9e-276
UNIPROTKB|E2IUA7767 E2IUA7 "Glutinol synthase" [Ka 0.989 0.855 0.681 1.7e-272
TAIR|locus:504956092769 CAMS1 "AT1G78955" [Arabidopsis 0.996 0.859 0.669 2.6e-269
TAIR|locus:2207315759 BAS "beta-amyrin synthase" [Ar 0.996 0.870 0.678 2.3e-268
UNIPROTKB|Q2XPU7769 Q2XPU7 "Lupeol synthase" [Rici 0.996 0.859 0.678 4.3e-267
UNIPROTKB|Q9LRH7764 OSCPSM "Mixed-amyrin synthase" 0.995 0.863 0.667 2.4e-266
UNIPROTKB|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
 Score = 2795 (988.9 bits), Expect = 4.9e-291, P = 4.9e-291
 Identities = 479/662 (72%), Positives = 567/662 (85%)

Query:     1 MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYN 60
             ++RA H++SA+QASDGHWPAENAGP++FLPP V C+YITGHLNTVF  EH++EILRY+Y 
Sbjct:    98 LRRAVHFYSALQASDGHWPAENAGPLFFLPPLVMCMYITGHLNTVFPAEHQKEILRYIYY 157

Query:    61 HQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIP 120
             HQ+EDGGWG+H+E  S+MF T  SY+CMR+LG GP+ G++NACARARKWI DHGGVT++P
Sbjct:   158 HQNEDGGWGLHIEGHSTMFCTALSYICMRILGEGPDGGQDNACARARKWILDHGGVTHMP 217

Query:   121 SWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVG 180
             SWGK WLSILGIFEW G+NPMPPEFWILPSF+P+HP+KMWCYCR+VYMP+SYLYGKRFVG
Sbjct:   218 SWGKTWLSILGIFEWIGSNPMPPEFWILPSFLPMHPAKMWCYCRMVYMPMSYLYGKRFVG 277

Query:   181 PITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTR 240
             PITPLI QLREEL+TQPY+++NW+KVRHLC+KED+YYPHP +Q+LLWD+LY+ +EPLLTR
Sbjct:   278 PITPLILQLREELYTQPYHQVNWKKVRHLCAKEDIYYPHPLIQDLLWDSLYIFTEPLLTR 337

Query:   241 WPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRI 300
             WP NKL+R+KAL+ TMK IHYED NSRYITIGCVEK LCMLACWVEDPNG  FKKH+ RI
Sbjct:   338 WPFNKLVREKALQVTMKHIHYEDENSRYITIGCVEKVLCMLACWVEDPNGDYFKKHIARI 397

Query:   301 ADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPV 360
              DYIW+ EDG+K+Q+FGSQ WDT   +QAL+A N+ DE+   L +GHD++KK+Q++DNP 
Sbjct:   398 PDYIWVAEDGIKMQSFGSQEWDTGFAIQALLASNLTDEIGPTLARGHDFIKKSQVKDNPS 457

Query:   361 GDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDA 420
             GD++   RH SKG+WTFSDQDHGWQVSDCTAEGLKC L  S+MPPEIVGEKMEPE+LYD+
Sbjct:   458 GDFESMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFSIMPPEIVGEKMEPEQLYDS 517

Query:   421 VNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFK 480
             VN LLSLQ  K GGLA WE AGA   LE LN  EF  D+++EH Y+ECTASA++  +LFK
Sbjct:   518 VNVLLSLQS-KNGGLAAWEPAGAQEWLELLNSTEFFADIVIEHEYIECTASAMQTLVLFK 576

Query:   481 KLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNN 540
             KLYP HRKKEIENFI  A  +++  Q  DGSWYGNWG+CF YGT FALGGL   GKTYNN
Sbjct:   577 KLYPGHRKKEIENFIKNAAQFLQVIQMPDGSWYGNWGVCFTYGTWFALGGLAAVGKTYNN 636

Query:   541 CLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQAD 600
             CLA+RRAVDFLL AQ D+GGWGESY SCP K Y PLEG +S +VHTA A++ LI AGQA+
Sbjct:   637 CLAVRRAVDFLLRAQRDNGGWGESYLSCPKKEYVPLEGNKSNLVHTAWAMMGLIHAGQAE 696

Query:   601 RDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVP 660
             RDPTP+HR  KL+INSQLE+GDFPQQEI GVFM+NCMLHYA Y+NI+PL ALAEYRK VP
Sbjct:   697 RDPTPLHRAAKLIINSQLEDGDFPQQEITGVFMKNCMLHYAAYKNIYPLWALAEYRKHVP 756

Query:   661 LP 662
             LP
Sbjct:   757 LP 758
GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IDA
GO:0042300 "beta-amyrin synthase activity" evidence=IDA
UNIPROTKB|A8CDT2 BAS "Beta-amyrin synthase" [Bruguiera gymnorhiza (taxid:39984)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA6 E2IUA6 "Taraxerol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA8 E2IUA8 "Friedelin synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA7 E2IUA7 "Glutinol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
TAIR|locus:504956092 CAMS1 "AT1G78955" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207315 BAS "beta-amyrin synthase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q2XPU7 Q2XPU7 "Lupeol synthase" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
UNIPROTKB|Q9LRH7 OSCPSM "Mixed-amyrin synthase" [Pisum sativum (taxid:3888)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8W3Z4CAS1_BETPL5, ., 4, ., 9, 9, ., 80.56960.98790.8539N/Ano
Q8W3Z1BAMS_BETPL5, ., 4, ., 9, 9, ., 3, 90.72350.99690.8485N/Ano
Q6Z2X6CAS_ORYSJ5, ., 4, ., 9, 9, ., 80.56810.98940.8642yesno
Q8W3Z3CAS2_BETPL5, ., 4, ., 9, 9, ., 80.57870.98940.8665N/Ano
Q8W3Z2LUPS_BETPL5, ., 4, ., 9, 9, ., 4, 10.59330.99090.8701N/Ano
F8WQD0SHS1_ASTTA5, ., 4, ., 9, 9, ., 4, 60.65400.99090.8633N/Ano
E2IUB0CASS_KALDA5, ., 4, ., 9, 9, ., 80.56210.98940.8586N/Ano
Q9SLP9CAS1_LUFCY5, ., 4, ., 9, 9, ., 80.55750.98940.8575N/Ano
A8C981TARS_RHISY5, ., 4, ., 9, 9, ., 3, 50.63120.99240.8534N/Ano
A8C980GERS_RHISY5, ., 4, ., 9, 9, ., 3, 40.71340.99840.8722N/Ano
O82139CAS1_PANGI5, ., 4, ., 9, 9, ., 80.57720.98940.8654N/Ano
Q2XPU6CAS1_RICCO5, ., 4, ., 9, 9, ., 80.57120.98940.8642N/Ano
Q948R6IMFS_LUFCY5, ., 4, ., 9, 9, ., 3, 60.65150.99390.8682N/Ano
Q9SXV6CAS1_GLYGL5, ., 4, ., 9, 9, ., 80.57420.98940.8665N/Ano
B9X0J1STBOS_STERE5, ., 4, ., 9, 9, ., 5, 10.64750.99690.8685N/Ano
Q2XPU7LUPS_RICCO5, ., 4, ., 9, 9, ., 4, 10.67870.99690.8595N/Ano
Q6BE23OXSC_CUCPE5, ., 4, ., 9, 9, ., -0.52710.98940.8642N/Ano
Q08IT1DADIS_PANGI4, ., 2, ., 1, ., 1, 2, 50.56240.99840.8608N/Ano
E7DN64DAMS_SOLLC5, ., 4, ., 9, 9, ., 3, 90.67970.99540.8650N/Ano
E7DN63BAMS_SOLLC5, ., 4, ., 9, 9, ., 3, 90.70840.99540.8672N/Ano
Q6BE24CUCS_CUCPE5, ., 4, ., 9, 9, ., 3, 30.55750.99090.8599N/Ano
Q6BE25CAS1_CUCPE5, ., 4, ., 9, 9, ., 80.55800.99390.8603N/Ano
Q9LRH8BAMS_PEA5, ., 4, ., 9, 9, ., 3, 90.70840.99690.8720N/Ano
A8CDT3LUPS_BRUGY5, ., 4, ., 9, 9, ., 4, 10.65300.99690.8685N/Ano
O82140BAMS1_PANGI5, ., 4, ., 9, 9, ., 3, 90.71340.99690.8663N/Ano
E2IUA7GLUTS_KALDA5, ., 4, ., 9, 9, ., 4, 90.68180.98940.8552N/Ano
E2IUA8FRIES_KALDA5, ., 4, ., 9, 9, ., 5, 00.69550.98940.8552N/Ano
E2IUA9LUPS_KALDA5, ., 4, ., 9, 9, ., 4, 10.70040.99540.8627N/Ano
A8CDT2BAS_BRUGY5, ., 4, ., 9, 9, ., 3, 90.72390.99840.8722N/Ano
Q9LRH7ABAMS_PEA5, ., 4, ., 9, 9, ., 4, 00.66510.99840.8664N/Ano
O82146BAMS2_PANGI5, ., 4, ., 9, 9, ., 3, 90.71340.99690.8685N/Ano
Q764T8LUPS_GLYGL5, ., 4, ., 9, 9, ., 4, 10.59180.98640.8627N/Ano
B6EXY6LUP4_ARATH5, ., 4, ., 9, 9, ., 3, 90.67820.99690.8708yesno
E2IUA6TARS_KALDA5, ., 4, ., 9, 9, ., 3, 50.70990.99690.8485N/Ano
Q9MB42BAMS_GLYGL5, ., 4, ., 9, 9, ., 3, 90.71640.99840.8653N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.4.990.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query663
PLN02993763 PLN02993, PLN02993, lupeol synthase 0.0
PLN03012759 PLN03012, PLN03012, Camelliol C synthase 0.0
cd02892634 cd02892, SQCY_1, Squalene cyclase (SQCY) domain su 0.0
TIGR01787621 TIGR01787, squalene_cyclas, squalene/oxidosqualene 0.0
TIGR03463634 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase 1e-169
cd02889348 cd02889, SQCY, Squalene cyclase (SQCY) domain; fou 1e-152
COG1657517 COG1657, SqhC, Squalene cyclase [Lipid metabolism] 1e-63
TIGR01507635 TIGR01507, hopene_cyclase, squalene-hopene cyclase 1e-51
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 6e-47
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 2e-13
pfam13243109 pfam13243, Prenyltrans_1, Prenyltransferase-like 9e-13
TIGR04277624 TIGR04277, squa_tetra_cyc, squalene--tetrahymanol 6e-12
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 2e-11
cd00688 300 cd00688, ISOPREN_C2_like, This group contains clas 2e-08
cd02889 348 cd02889, SQCY, Squalene cyclase (SQCY) domain; fou 1e-07
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 9e-07
pfam13243109 pfam13243, Prenyltrans_1, Prenyltransferase-like 1e-05
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 4e-05
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 4e-04
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 4e-04
pfam13243109 pfam13243, Prenyltrans_1, Prenyltransferase-like 0.004
>gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase Back     alignment and domain information 
 Score = 1091 bits (2823), Expect = 0.0
 Identities = 442/657 (67%), Positives = 528/657 (80%), Gaps = 1/657 (0%)

Query: 1   MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYN 60
           ++R   +FSA+QASDGHWP E  GP++FLPP VFCLYITGHL  VF  EHR+E+LR++Y 
Sbjct: 99  LRRGVSFFSALQASDGHWPGEITGPLFFLPPLVFCLYITGHLEEVFDAEHRKEMLRHIYC 158

Query: 61  HQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIP 120
           HQ+EDGGWG+H+E+ S MF TV +Y+C+R+LG GPN G  NAC RAR+WI DHGGVTYIP
Sbjct: 159 HQNEDGGWGLHIESKSVMFCTVLNYICLRMLGEGPNGGRENACKRARQWILDHGGVTYIP 218

Query: 121 SWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVG 180
           SWGK WLSILGI++WSGTNPMPPE W+LPSF+P+H  K  CY R+VYMP+SYLYGKRFVG
Sbjct: 219 SWGKFWLSILGIYDWSGTNPMPPEIWLLPSFLPIHLGKTLCYTRMVYMPMSYLYGKRFVG 278

Query: 181 PITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTR 240
           PITPLI  LREELH QPY EINW K R LC+KED+YYPHP VQ+L+WDTL+   EP LTR
Sbjct: 279 PITPLIMLLREELHLQPYEEINWNKARRLCAKEDMYYPHPLVQDLIWDTLHNFVEPFLTR 338

Query: 241 WPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRI 300
           WPLNKL+R+KAL+  MK IHYED NS YITIGCVEK LCMLACW+E+PNG  FKKHL RI
Sbjct: 339 WPLNKLVREKALQVAMKHIHYEDENSHYITIGCVEKVLCMLACWIENPNGDHFKKHLARI 398

Query: 301 ADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPV 360
            DY+W+ EDGMK+Q+FGSQ WDT   +QAL+A +++DE + VL +GH+Y+KK+Q+R+NP 
Sbjct: 399 PDYMWVAEDGMKMQSFGSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPS 458

Query: 361 GDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDA 420
           GD+K  +RH SKGAWT SD+DHGWQVSDCTAE LKC + LS+MP ++VG+K++PE+LYD+
Sbjct: 459 GDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDS 518

Query: 421 VNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFK 480
           VN LLSLQ E  GG+  WE   A   LE LNP +F  + +VE  YVECT++ I+A +LFK
Sbjct: 519 VNLLLSLQSEN-GGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFK 577

Query: 481 KLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNN 540
           +LYP HR KEI   I KAV +IE +QT DGSWYGNWGICFIY T FALGGL  AGKTYN+
Sbjct: 578 QLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYND 637

Query: 541 CLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQAD 600
           CLA+R+ V FLL  Q DDGGWGESY SCP + Y PLEG RS +V TA A++ LI AGQA+
Sbjct: 638 CLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAE 697

Query: 601 RDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRK 657
           RD  P+HR  KL+I SQLENGDFPQQEI+G FM  CMLHYA YRN FPL ALAEYRK
Sbjct: 698 RDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCMLHYATYRNTFPLWALAEYRK 754

Length = 763
>gnl|CDD|166653 PLN03012, PLN03012, Camelliol C synthase Back     alignment and domain information
>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases Back     alignment and domain information
>gnl|CDD|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase Back     alignment and domain information
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|233442 TIGR01507, hopene_cyclase, squalene-hopene cyclase Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|212000 TIGR04277, squa_tetra_cyc, squalene--tetrahymanol cyclase Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 663
PLN03012759 Camelliol C synthase 100.0
PLN02993763 lupeol synthase 100.0
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 100.0
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 100.0
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 100.0
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 100.0
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 100.0
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 100.0
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 100.0
PLN03012759 Camelliol C synthase 100.0
PLN02993763 lupeol synthase 100.0
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 100.0
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 100.0
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 100.0
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 100.0
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 99.96
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.95
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.93
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.92
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.91
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 99.84
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 99.83
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 99.83
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.82
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 99.81
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 99.79
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 99.78
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 99.78
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 99.76
PF07678246 A2M_comp: A-macroglobulin complement component; In 99.71
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 99.7
PLN02710439 farnesyltranstransferase subunit beta 99.69
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.67
PLN02710 439 farnesyltranstransferase subunit beta 99.67
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.66
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.66
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 99.65
KOG0366329 consensus Protein geranylgeranyltransferase type I 99.64
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.59
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 99.58
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.54
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.48
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 99.47
KOG0366329 consensus Protein geranylgeranyltransferase type I 99.45
KOG0367347 consensus Protein geranylgeranyltransferase Type I 99.43
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 99.37
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 99.27
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 99.27
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 99.25
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 99.17
PF07678246 A2M_comp: A-macroglobulin complement component; In 99.12
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 99.11
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 98.85
KOG0367347 consensus Protein geranylgeranyltransferase Type I 98.79
COG1689274 Uncharacterized protein conserved in archaea [Func 98.76
COG1689274 Uncharacterized protein conserved in archaea [Func 98.6
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 98.39
KOG1366 1436 consensus Alpha-macroglobulin [Posttranslational m 98.36
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 98.23
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 98.01
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 97.59
TIGR01577616 oligosac_amyl oligosaccharide amylase. The name of 97.59
PLN02592 800 ent-copalyl diphosphate synthase 97.4
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 97.25
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 97.19
PLN02592 800 ent-copalyl diphosphate synthase 97.12
PLN02279 784 ent-kaur-16-ene synthase 96.71
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 96.7
PLN02279 784 ent-kaur-16-ene synthase 96.67
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 96.5
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 96.02
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 95.46
TIGR01535648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 95.37
TIGR01577616 oligosac_amyl oligosaccharide amylase. The name of 94.8
KOG1366 1436 consensus Alpha-macroglobulin [Posttranslational m 94.61
COG3387612 SGA1 Glucoamylase and related glycosyl hydrolases 93.77
TIGR01535 648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 93.62
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 92.48
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 90.87
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 90.85
PF10022361 DUF2264: Uncharacterized protein conserved in bact 83.45
>PLN03012 Camelliol C synthase Back     alignment and domain information 
Probab=100.00  E-value=5.6e-165  Score=1384.48  Aligned_cols=660  Identities=68%  Similarity=1.302  Sum_probs=630.2

Q ss_pred             ChHHHHHHHHhcCCCCCccCCCCCCCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCCceeh
Q 006042            1 MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFG   80 (663)
Q Consensus         1 ~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~   80 (663)
                      |+|+++||+++|.+||||++|++||+|++|++||++|++|..|++++++++++++|||+++||+|||||+|++|+|+||+
T Consensus        99 ~~ra~~~~~~lQ~~dGhW~~e~~g~~fl~~~~Vi~~yi~g~~~~~~~~~~~~ei~ryl~~~Qn~DGGWglh~eg~s~~~~  178 (759)
T PLN03012         99 LRKGIHFFSALQASDGHWPAENAGPLFFLPPLVFCLYITGHLDEIFTQDHRKEILRYIYCHQKEDGGWGLHIEGHSTMFC  178 (759)
T ss_pred             HHHHHHHHHHhccCCCCcccccCCccchhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccCCCCeecccCCCCcchh
Confidence            57999999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhCcccCCCCCCCCCceeecCCCCCCCCCccc
Q 006042           81 TVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMW  160 (663)
Q Consensus        81 t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~el~llP~~~p~~~~~~~  160 (663)
                      ||+||+|||++|+++|+++||+|+|||+||++|||++++|+|||||||+||+|+|+++|+|||||||||.||||||+|||
T Consensus       179 Tv~~YvaLRllG~~~d~~~~~~m~rAR~~Il~~GGa~~~p~w~K~wLA~lG~y~W~g~np~PpElwLLP~~~P~hp~~~~  258 (759)
T PLN03012        179 TTLNYICMRILGEGPDGGHDNACGRARDWILDHGGATYIPSWGKTWLSILGVFDWSGSNPMPPEFWILPSFFPIHPAKMW  258 (759)
T ss_pred             HHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHHcCCcccCchHHHHHHHHcCccccCCCCCCChhHHHccCcCCccHHHHH
Confidence            99999999999999997655799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhHHHhhcCCCCccCCchhHhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccC
Q 006042          161 CYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTR  240 (663)
Q Consensus       161 ~~~r~~~~pl~~l~~~r~~~~~~p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~  240 (663)
                      ||+|+||+||+||+++||+++++|++.+||+|||++||++|+|...|+.|++.|.|+|++++.+++|..++.++++++..
T Consensus       259 ~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~~~a~~D~y~p~~~~~~~~~~~l~~~~~~~l~~  338 (759)
T PLN03012        259 CYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARHLCAKEDAYCPHPLIQDLIWDCLYIFAEPFLAC  338 (759)
T ss_pred             HHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhccccccccccCCchHHHhhhHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999998888898999998877


Q ss_pred             CCCC-hHHHHHHHHHHHHHhhhhcCCCceeeecccchhhccccccccCCCcHHHHHHHHHHhhhheecCCCceeecCCCC
Q 006042          241 WPLN-KLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQ  319 (663)
Q Consensus       241 ~~~~-~l~r~~a~~~~~~~i~~~~~~~~~~~~~~v~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~  319 (663)
                      +|+. +| |++|+++++++|.++++++.|++++||+++|+||++++++|+||.+++|+++|.+|+|+.+||+++|+|+||
T Consensus       339 ~~~~~~L-R~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p~~~~~k~hl~ri~d~lw~~~dGm~~q~~gSq  417 (759)
T PLN03012        339 WPFNKLL-REKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDPNGDHFKKHLLRISDYLWIAEDGMKMQSFGSQ  417 (759)
T ss_pred             ccccHHH-HHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcEEEeCCceEEcCCCCc
Confidence            7644 57 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHH
Q 006042          320 TWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQ  399 (663)
Q Consensus       320 vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~  399 (663)
                      ||||+++++||.++|+.+++.+.++||++||.++|++++.+|||..++++.++|||+||+.|++|||+||||++|+|++.
T Consensus       418 vWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~ll  497 (759)
T PLN03012        418 LWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLL  497 (759)
T ss_pred             HHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHHHH
Confidence            99999999999999998877889999999999999998888999999999999999999999999999999999999777


Q ss_pred             hcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHh
Q 006042          400 LSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLF  479 (663)
Q Consensus       400 ~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~  479 (663)
                      +...+++.+++++.++++.+|++||+++||+ ||||++|+.+++..|+|.+||+|+|+++|+|++++|||+++|++|..+
T Consensus       498 l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~-dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f  576 (759)
T PLN03012        498 FSMIAPDIVGPKMDPEQLHDAVNILLSLQSK-NGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILF  576 (759)
T ss_pred             HHhcccccccccccHHHHHHHHHHHHhccCC-CCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHH
Confidence            7655544455667889999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCC
Q 006042          480 KKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDG  559 (663)
Q Consensus       480 ~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG  559 (663)
                      ++..++++.++++++|+||++||++.|++||||+|+||+||+|||++||.||..+|..+.+++.|+||++||+++|++||
T Consensus       577 ~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DG  656 (759)
T PLN03012        577 KQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNG  656 (759)
T ss_pred             hhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCC
Confidence            98778887777899999999999999999999999999999999999999999999986567999999999999999999


Q ss_pred             CccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccccccccccc
Q 006042          560 GWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLH  639 (663)
Q Consensus       560 gWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~  639 (663)
                      ||||++.||++++|++++++.|++++|||||+||+++|+.+.++++|+||++||+++|++||+|++++++|+||++|||+
T Consensus       657 GWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i~  736 (759)
T PLN03012        657 GWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLLH  736 (759)
T ss_pred             CcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEEe
Confidence            99999999999999987777899999999999999999876666689999999999999999999999999999999999


Q ss_pred             cCCccchHHHHHHHHHHHhCCCC
Q 006042          640 YAEYRNIFPLRALAEYRKRVPLP  662 (663)
Q Consensus       640 y~~y~~~~pl~AL~~y~~~~~~~  662 (663)
                      ||+|+++|||||||+|++.++.+
T Consensus       737 Y~~Yr~~FPl~ALg~Y~~~~~~~  759 (759)
T PLN03012        737 YAAYRNIFPLWALAEYRARVPLP  759 (759)
T ss_pred             cCccchHHHHHHHHHHHHhccCC
Confidence            99999999999999999988753

>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query663
1w6j_A732 Structure Of Human Osc In Complex With Ro 48-8071 L 1e-141
1w6k_A732 Structure Of Human Osc In Complex With Lanosterol L 1e-141
1gsz_A631 Crystal Structure Of A Squalene Cyclase In Complex 5e-24
3sqc_A631 Squalene-Hopene Cyclase Length = 631 2e-23
2sqc_A631 Squalene-Hopene Cyclase From Alicyclobacillus Acido 2e-23
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732 Back     alignment and structure 
Iteration: 1

 Score =  498 bits (1282), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/662 (39%), Positives = 393/662 (59%), Gaps = 28/662 (4%)
Query: 7   YFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTV-FTVEHRREILRYLYNHQHED 65
           ++  +QA DGHW     G        +  L IT H+  +     +R EI+RYL + Q  D
Sbjct: 83  FYVGLQAEDGHW----TGDYGGPLFLLPGLLITCHVARIPLPAGYREEIVRYLRSVQLPD 138
Query: 66  GGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKN 125
           GGWG+H+E  S++FGT  +Y+ +R+LG+GP+D +     RAR  +   GG   IPSWGK 
Sbjct: 139 GGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPD---LVRARNILHKKGGAVAIPSWGKF 195
Query: 126 WLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITPL 185
           WL++L ++ W G N + PE W+ P + P HPS +WC+CR VY+P+SY Y  R      PL
Sbjct: 196 WLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPL 255
Query: 186 IQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNK 245
           +Q LR+EL+ + +  I+W   R+  + ++LY PH ++  +++  L L           + 
Sbjct: 256 VQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALLNLYEH------HHSA 309
Query: 246 LIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACW-VEDPNGIAFKKHLNRIADYI 304
            +RQ+A+++  + I  +D  ++ I+IG + K + ML  W V+ P   AF++H++RI DY+
Sbjct: 310 HLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYL 369
Query: 305 WLGEDGMKVQ-TFGSQTWDTALGLQALMAC--NIADEVESVLGKGHDYLKKAQIRDNPVG 361
           W+G DGMK+Q T GSQ WDTA  +QAL+    +   E  S L K H++L+ +Q+ DNP  
Sbjct: 370 WMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPP- 428
Query: 362 DYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAV 421
           DY+  +R   KG ++FS  D GW VSDCTAE LK VL L    P +  E +  ERL DAV
Sbjct: 429 DYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVT-EHIPRERLCDAV 487
Query: 422 NFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKK 481
             LL++++   GG A +E      LLE LNP E   D+++++TYVECT++ ++A   F K
Sbjct: 488 AVLLNMRNPD-GGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHK 546
Query: 482 LYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNN- 540
            +P HR  EI   + + + +   +Q ADGSW G+WG+CF YGT F L      G+TY + 
Sbjct: 547 RFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDG 606
Query: 541 --CLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQ 598
             C  + RA DFLL+ Q  DGGWGE ++SC  + Y  L+  +S + +T  A++ L++   
Sbjct: 607 TACAEVSRACDFLLSRQMADGGWGEDFESCEERRY--LQSAQSQIHNTCWAMMGLMAVRH 664
Query: 599 ADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKR 658
            D +     RGV+ L+  QL NGD+PQ+ I GVF ++C + Y  YRNIFP+ AL  + + 
Sbjct: 665 PDIEAQ--ERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQL 722
Query: 659 VP 660
            P
Sbjct: 723 YP 724
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732 Back     alignment and structure
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With The Potential Anticholesteremic Drug Ro48-8071 Length = 631 Back     alignment and structure
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase Length = 631 Back     alignment and structure
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus Acidocaldarius Length = 631 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query663
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 0.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 0.0
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 6e-07
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 7e-13
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 1e-06
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1gxm_A 332 Pectate lyase; mechanism, elimination; 1.32A {Cell 4e-05
1gxm_A 332 Pectate lyase; mechanism, elimination; 1.32A {Cell 1e-04
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 3e-04
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 Back     alignment and structure
 Score =  667 bits (1722), Expect = 0.0
 Identities = 262/667 (39%), Positives = 392/667 (58%), Gaps = 26/667 (3%)

Query: 1   MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYN 60
                 ++  +QA DGHW  +  GP++ LP  +   ++           +R EI+RYL +
Sbjct: 77  ALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVAR---IPLPAGYREEIVRYLRS 133

Query: 61  HQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIP 120
            Q  DGGWG+H+E  S++FGT  +Y+ +R+LG+GP+D       RAR  +   GG   IP
Sbjct: 134 VQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDD---PDLVRARNILHKKGGAVAIP 190

Query: 121 SWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVG 180
           SWGK WL++L ++ W G N + PE W+ P + P HPS +WC+CR VY+P+SY Y  R   
Sbjct: 191 SWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSA 250

Query: 181 PITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTR 240
              PL+Q LR+EL+ + +  I+W   R+  + ++LY PH ++  +++  L      L   
Sbjct: 251 AEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALLN-----LYEH 305

Query: 241 WPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACW-VEDPNGIAFKKHLNR 299
                L RQ+A+++  + I  +D  ++ I+IG + K + ML  W V+ P   AF++H++R
Sbjct: 306 HHSAHL-RQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSR 364

Query: 300 IADYIWLGEDGMKVQ-TFGSQTWDTALGLQALMAC--NIADEVESVLGKGHDYLKKAQIR 356
           I DY+W+G DGMK+Q T GSQ WDTA  +QAL+    +   E  S L K H++L+ +Q+ 
Sbjct: 365 IPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVP 424

Query: 357 DNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPER 416
           DNP  DY+  +R   KG ++FS  D GW VSDCTAE LK VL L    P +  E +  ER
Sbjct: 425 DNP-PDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHV-TEHIPRER 482

Query: 417 LYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAF 476
           L DAV  LL++++   GG A +E      LLE LNP E   D+++++TYVECT++ ++A 
Sbjct: 483 LCDAVAVLLNMRN-PDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQAL 541

Query: 477 MLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGK 536
             F K +P HR  EI   + + + +   +Q ADGSW G+WG+CF YGT F L      G+
Sbjct: 542 KYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQ 601

Query: 537 TYNN---CLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSL 593
           TY +   C  + RA DFLL+ Q  DGGWGE ++SC  + Y   +  +S + +T  A++ L
Sbjct: 602 TYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYV--QSAQSQIHNTCWAMMGL 659

Query: 594 ISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALA 653
           ++    D +     RGV+ L+  QL NGD+PQ+ I GVF ++C + Y  YRNIFP+ AL 
Sbjct: 660 MAVRHPDIE--AQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALG 717

Query: 654 EYRKRVP 660
            + +  P
Sbjct: 718 RFSQLYP 724
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Length = 408 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Length = 414 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Length = 332 Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Length = 332 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query663
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 100.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 100.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 100.0
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 100.0
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 99.95
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 99.93
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 99.92
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 99.92
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 99.9
2wy7_A310 Complement C3D fragment; immune system, immune res 99.88
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.88
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 99.88
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.87
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 99.86
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 99.83
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 99.82
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 99.69
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.67
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.65
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 99.65
2hr0_B 915 Complement C3 alpha' chain; complement component C 99.65
2wy7_A310 Complement C3D fragment; immune system, immune res 99.65
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 99.64
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 99.59
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 99.57
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 99.5
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 99.46
2hr0_B 915 Complement C3 alpha' chain; complement component C 99.34
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 99.28
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 99.24
3prx_B 1642 Cobra venom factor; immune system, complement, imm 99.21
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 99.19
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 99.14
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 99.1
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.7
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.65
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 98.63
4fxk_B767 Complement C4-A alpha chain; immune system, proteo 98.52
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 98.45
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 98.36
2pmv_A 399 Gastric intrinsic factor; cobalamin transport prot 98.21
3k11_A445 Putative glycosyl hydrolase; structural genomics, 97.83
3prx_B 1642 Cobra venom factor; immune system, complement, imm 97.54
3pmm_A382 Putative cytoplasmic protein; structural genomics, 97.42
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 97.13
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 96.81
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 96.8
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 96.73
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 96.71
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 96.6
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 96.44
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 96.33
1nc5_A373 Hypothetical protein YTER; structural genomics, he 96.25
3pmm_A382 Putative cytoplasmic protein; structural genomics, 95.89
1nc5_A373 Hypothetical protein YTER; structural genomics, he 95.6
3k11_A445 Putative glycosyl hydrolase; structural genomics, 95.55
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 94.14
1lf6_A684 Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica 94.1
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 93.87
2gz6_A 388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 93.36
1ulv_A 1020 Glucodextranase; GH family 15, (alpha-alpha)6-barr 93.29
2vn4_A 599 Glucoamylase; hydrolase, carbohydrate binding, gly 91.05
2fba_A492 Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hy 91.0
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 89.47
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 88.81
3gt5_A 402 N-acetylglucosamine 2-epimerase; structural genomi 87.8
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 87.59
1gai_A472 Glucoamylase-471; hydrolase, glycosidase, polysacc 85.25
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 83.25
1lf6_A 684 Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica 83.2
1ulv_A 1020 Glucodextranase; GH family 15, (alpha-alpha)6-barr 81.54
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 80.79
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
Probab=100.00  E-value=9.7e-131  Score=1139.30  Aligned_cols=642  Identities=40%  Similarity=0.818  Sum_probs=590.9

Q ss_pred             ChHHHHHHHHhcCCCCCccCCCCCCCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCCceeh
Q 006042            1 MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFG   80 (663)
Q Consensus         1 ~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~   80 (663)
                      |+++++||+++|.+||||++|++||+|+++++||++|++|+   ++++++++++++||+++||+||||++|++++|+||+
T Consensus        77 ~~~~~~~~~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~yl~~~Q~~DGgWgl~~~~~s~~~~  153 (732)
T 1w6k_A           77 ALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARI---PLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFG  153 (732)
T ss_dssp             HHHHHHHHHTTBCTTSCBCCCCCCBSSHHHHHHHHHHHHTC---CCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHH
T ss_pred             HHHHHHHHHHhcCCCCCccccccCchhhhHHHHHHHHHhCC---CCCHHHHHHHHHHHHHhcCCCCCccCCcCCCccHHH
Confidence            47899999999999999999999999999999999999995   556678999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhCcccCCCCCCCCCceeecCCCCCCCCCccc
Q 006042           81 TVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMW  160 (663)
Q Consensus        81 t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~el~llP~~~p~~~~~~~  160 (663)
                      ||+||+|||++|+++++   |+|+|||+||++|||++++|+|||||||++|+|+|+++|+|||||||||.||||||++||
T Consensus       154 T~~~Y~aLrl~G~~~~~---~~~~~ar~~i~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~PpE~~llP~~~p~~~~~~~  230 (732)
T 1w6k_A          154 TALNYVSLRILGVGPDD---PDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLW  230 (732)
T ss_dssp             HHHHHHHHHHTTCCTTS---HHHHHHHHHHHHTTCGGGCCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSC
T ss_pred             HHHHHHHHHHcCCCCCc---HHHHHHHHHHHHcCCcccCcHHHHHHHHHcCCCCcccCCCCCHHHHHccCcCCCCHHHHH
Confidence            99999999999998887   599999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhHHHhhcCCCCccCCchhHhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccC
Q 006042          161 CYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTR  240 (663)
Q Consensus       161 ~~~r~~~~pl~~l~~~r~~~~~~p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~  240 (663)
                      ||+|+|++||+||+++||+++.+|++.+||+|||+.|+.+|+|...|+.|++.|.|+|++.+...++..+ +.+++++  
T Consensus       231 ~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~l-~~~e~~~--  307 (732)
T 1w6k_A          231 CHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL-NLYEHHH--  307 (732)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCCHHHHHHHHHH-HHHHHTC--
T ss_pred             HHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhccccccccccCCHHHHHHHHHHHH-HHhhhcC--
Confidence            9999999999999999999988899899999999999999999999999999999999998888877666 6667654  


Q ss_pred             CCCChHHHHHHHHHHHHHhhhhcCCCceeeecccchhhcccccccc-CCCcHHHHHHHHHHhhhheecCCCceeecC-CC
Q 006042          241 WPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVE-DPNGIAFKKHLNRIADYIWLGEDGMKVQTF-GS  318 (663)
Q Consensus       241 ~~~~~l~r~~a~~~~~~~i~~~~~~~~~~~~~~v~~~l~~l~~~~~-~p~~~~~~~~~~~l~~~~~~~~~g~~~~~~-~s  318 (663)
                        ++++ |++|+++++++|.+++++++|++++||++++||++++.+ +|++|.+++|+++|.+|+|+.+||+++|++ +|
T Consensus       308 --~~~l-r~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~~~~~~~~~l~~l~~~l~~~~dG~~~q~~~gs  384 (732)
T 1w6k_A          308 --SAHL-RQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNGS  384 (732)
T ss_dssp             --CHHH-HHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTSGGGEEEETTEEEECSSSCC
T ss_pred             --cHHH-HHHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhheeCCCCceeCCCCCC
Confidence              3567 999999999999999999999999999999999888753 599999999999999999999999999999 59


Q ss_pred             CchHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHH
Q 006042          319 QTWDTALGLQALMACNIAD--EVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKC  396 (663)
Q Consensus       319 ~vwdTal~~~AL~~ag~~~--~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a  396 (663)
                      +||||+++++||.++|+++  ++.+.++||++||.++|++++ .|+|...|++..+|||+|++.++++||+|+||++++|
T Consensus       385 ~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~-~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~a  463 (732)
T 1w6k_A          385 QIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKA  463 (732)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhccccc-CCcccccccCCCCCeecCCCCCCCCCccccHHHHHHH
Confidence            9999999999999999754  467899999999999998763 4788888999999999999998999999999999999


Q ss_pred             HHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHH
Q 006042          397 VLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAF  476 (663)
Q Consensus       397 L~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL  476 (663)
                      |..+.+.+.+ .++.++.++++++++||+++|++ ||||++|+.+++..|++.+||++.|++++++++++++|+++|.+|
T Consensus       464 L~~~~~~~~~-~g~~~~~~~i~~av~wLls~Q~~-DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL  541 (732)
T 1w6k_A          464 VLLLQEKCPH-VTEHIPRERLCDAVAVLLNMRNP-DGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQAL  541 (732)
T ss_dssp             HHHHHHHCTT-CCSCCCHHHHHHHHHHHHTTCCT-TSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHH
T ss_pred             HHHHhccccc-ccchhhHHHHHHHHHHHHHhcCC-CCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHH
Confidence            9987642211 13356789999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCCh---HHHHHHHHHHHh
Q 006042          477 MLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNC---LAIRRAVDFLLN  553 (663)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~---~~i~ra~~~Ll~  553 (663)
                      ..++...++++.+++++.|+||++||++.|++||+|++.||++++|+|++++.||..+|....+.   +.++||++||++
T Consensus       542 ~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls  621 (732)
T 1w6k_A          542 KYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLS  621 (732)
T ss_dssp             HHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHT
T ss_pred             HHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHH
Confidence            99987667776667788999999999999999999999999999999999999999999864223   799999999999


Q ss_pred             hcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccccc
Q 006042          554 AQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFM  633 (663)
Q Consensus       554 ~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~  633 (663)
                      +|++||||++++.+|.++.|.+  +..|++++|||||+||+.++..  +.+.++++++||+++|+++|+|++++++|+||
T Consensus       622 ~Q~~DGGWge~~~s~~~~~y~~--~~~s~v~~TAwALlALl~ag~~--~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~  697 (732)
T 1w6k_A          622 RQMADGGWGEDFESCEERRYVQ--SAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFN  697 (732)
T ss_dssp             TCCTTSCCCBCTHHHHHTSCCB--CSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCEEET
T ss_pred             hcccCCCCCCCCccccccccCC--CCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCCccccccc
Confidence            9999999999887776667765  5679999999999999999875  34679999999999999999999999999999


Q ss_pred             cccccccCCccchHHHHHHHHHHHhCCC
Q 006042          634 RNCMLHYAEYRNIFPLRALAEYRKRVPL  661 (663)
Q Consensus       634 ~~~~~~y~~y~~~~pl~AL~~y~~~~~~  661 (663)
                      +.|||+|++|+++|||+||++|++++..
T Consensus       698 ~~~~i~Y~~y~~~fpl~AL~~y~~~~~~  725 (732)
T 1w6k_A          698 KSCAISYTSYRNIFPIWALGRFSQLYPE  725 (732)
T ss_dssp             TTEEECCTTHHHHHHHHHHHHHHHHCTT
T ss_pred             chhhhcccchhHHHHHHHHHHHHHhcch
Confidence            9999999999999999999999998754
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A* Back     alignment and structure
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* Back     alignment and structure
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A* Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* Back     alignment and structure
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 663
d1w6ka1448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 1e-147
d1w6ka2279 a.102.4.2 (A:100-378) Lanosterol synthase {Human ( 1e-132
d1w6ka2279 a.102.4.2 (A:100-378) Lanosterol synthase {Human ( 0.001
d2sqca1352 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla 1e-107
d2sqca2271 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alic 5e-72
d1r76a_408 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 1e-13
d1r76a_408 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 5e-10
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 4e-08
d1gxma_324 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 1e-07
d1gxma_ 324 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 6e-07
d1gxma_ 324 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 4e-06
d1gxma_324 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 8e-06
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 1e-06
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 8e-04
d1n4qb_346 a.102.4.3 (B:) Protein farnesyltransferase, beta-s 0.002
d1n4qb_346 a.102.4.3 (B:) Protein farnesyltransferase, beta-s 0.002
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  432 bits (1111), Expect = e-147
 Identities = 166/435 (38%), Positives = 236/435 (54%), Gaps = 23/435 (5%)

Query: 238 LTRWPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNG-IAFKKH 296
           L RW LN   R +   +T  ++  E        +      L     + + P    AF+  
Sbjct: 17  LGRWRLNCE-RGR---QTWTYLQDERAGREQTGLEAYALGLDTKNYFKDLPKAHTAFEGA 72

Query: 297 LNRIADYIWLG-EDGMKVQ-----TFGSQTWDTALGLQALMACNIA--DEVESVLGKGHD 348
           LN +  Y+ L  EDG         T GSQ WDTA  +QAL+        E  S L K H+
Sbjct: 73  LNGMTFYVGLQAEDGHWTGDYGQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHE 132

Query: 349 YLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIV 408
           +L+ +Q+ DNP  DY+  +R   KG ++FS  D GW VSDCTAE LK VL L    P  V
Sbjct: 133 FLRLSQVPDNP-PDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPH-V 190

Query: 409 GEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVEC 468
            E +  ERL DAV  LL++++   GG A +E      LLE LNP E   D+++++TYVEC
Sbjct: 191 TEHIPRERLCDAVAVLLNMRN-PDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVEC 249

Query: 469 TASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFAL 528
           T++ ++A   F K +P HR  EI   + + + +   +Q ADGSW G+WG+CF YGT F L
Sbjct: 250 TSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGL 309

Query: 529 GGLQVAGKTYNN---CLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVH 585
                 G+TY +   C  + RA DFLL+ Q  DGGWGE ++SC  + Y   +  +S + +
Sbjct: 310 EAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYV--QSAQSQIHN 367

Query: 586 TALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRN 645
           T  A++ L++    D +     RGV+ L+  QL NGD+PQ+ I GVF ++C + Y  YRN
Sbjct: 368 TCWAMMGLMAVRHPDIE--AQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRN 425

Query: 646 IFPLRALAEYRKRVP 660
           IFP+ AL  + +  P
Sbjct: 426 IFPIWALGRFSQLYP 440
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279 Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279 Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 271 Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Length = 408 Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Length = 408 Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346 Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query663
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 100.0
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 100.0
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.95
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.93
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 99.83
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 99.81
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.81
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 99.78
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 99.69
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 99.64
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 99.62
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 99.57
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 99.55
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 99.51
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 99.47
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 99.33
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 99.32
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 98.77
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 98.53
d1w6ka2 279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.4
d1lf6a1397 Bacterial glucoamylase, C-terminal domain {Thermoa 96.8
d1ulva1413 Glucodextranase, domain A {Arthrobacter globiformi 96.36
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 95.34
d1lf6a1 397 Bacterial glucoamylase, C-terminal domain {Thermoa 94.81
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 94.36
d1ulva1 413 Glucodextranase, domain A {Arthrobacter globiformi 93.95
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 92.13
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 89.79
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 87.13
d1fp3a_ 402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 86.06
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 83.96
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-78  Score=656.01  Aligned_cols=397  Identities=40%  Similarity=0.728  Sum_probs=357.8

Q ss_pred             hhhhcCCCceeeecccchhhccccccccCCC-cHHHHHHHHHHhhhhee-cCCCcee----ecC-CCCchHHHHHHHHHH
Q 006042          259 IHYEDHNSRYITIGCVEKPLCMLACWVEDPN-GIAFKKHLNRIADYIWL-GEDGMKV----QTF-GSQTWDTALGLQALM  331 (663)
Q Consensus       259 i~~~~~~~~~~~~~~v~~~l~~l~~~~~~p~-~~~~~~~~~~l~~~~~~-~~~g~~~----~~~-~s~vwdTal~~~AL~  331 (663)
                      |.+++..+.+.++.+++.+|++|+++.++|. +..++++++++.+++++ .+||+++    |++ +||||||+++++||.
T Consensus        34 ~~~e~~g~~~~~~~~~~~~L~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~edg~w~~~~~~~~~~S~vWDTal~~~AL~  113 (448)
T d1w6ka1          34 LQDERAGREQTGLEAYALGLDTKNYFKDLPKAHTAFEGALNGMTFYVGLQAEDGHWTGDYGQGTNGSQIWDTAFAIQALL  113 (448)
T ss_dssp             CCC--CCCCCCHHHHHHHTCCCTTTSCCCCCCCSHHHHHHHHHHHHHTTBCTTSCBCCCCCCSSSCCHHHHHHHHHHHHH
T ss_pred             hhhhcCCCcccchHHHHHHHHHhCcCccCchhhhHHHHHHhhhhHhhccccCCCchhHhhcCCCCCCChHHHHHHHHHHH
Confidence            4466667778888999999999999888775 45899999999999875 6888765    555 799999999999999


Q ss_pred             HcCC--CCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccC
Q 006042          332 ACNI--ADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVG  409 (663)
Q Consensus       332 ~ag~--~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~  409 (663)
                      ++|.  .+++++.++||.+||..+|+.+. +|||.+++++..+|||+|++.|++|||+||||++|+||+.+....+. .+
T Consensus       114 ~ag~~~~~~~~~~l~kA~~wL~~~Q~~~~-~gd~~~~~~~~~~GGW~f~~~n~~~Pd~DdTA~~l~al~~~~~~~~~-~~  191 (448)
T d1w6ka1         114 EAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPH-VT  191 (448)
T ss_dssp             HTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTT-CC
T ss_pred             HhCCCCCccchHHHHHHHHHHHhhccCcC-CCcchhhcCCCCCCceeCCcCCCCCCCCccHHHHHHHHHHHhccCcc-cc
Confidence            9985  34568999999999999999874 58999999999999999999999999999999999999876532221 34


Q ss_pred             CCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchH
Q 006042          410 EKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKK  489 (663)
Q Consensus       410 ~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~  489 (663)
                      +++.++++.+|++||++|||+ ||||++|+.+++..++|.+++++.|++.++|+++++||+++|++|..++...|+++..
T Consensus       192 ~~~~~~~i~~av~wLl~mQn~-dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~~  270 (448)
T d1w6ka1         192 EHIPRERLCDAVAVLLNMRNP-DGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAA  270 (448)
T ss_dssp             SCCCHHHHHHHHHHHHTTCCT-TSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHH
T ss_pred             ccccHHHHHHHHHHHHHhcCC-CCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHHHHHHHHHHHhhhCCccccc
Confidence            567889999999999999999 9999999999999999999999999999999999999999999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCc---CChHHHHHHHHHHHhhcCCCCCccCCCc
Q 006042          490 EIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTY---NNCLAIRRAVDFLLNAQSDDGGWGESYK  566 (663)
Q Consensus       490 ~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~---~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~  566 (663)
                      +++++|+|+++||++.|++||||+++||++++|+|++++.||..+|...   ...+.++||++||+++|++||||++++.
T Consensus       271 ~~~~~i~ral~yL~~~Q~~DGsW~g~wg~~~~ygT~~al~aL~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~~~  350 (448)
T d1w6ka1         271 EIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFE  350 (448)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTH
T ss_pred             cchHHHHHHHHHHHccCCCCCcccccCCCcccHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHhccCCCCCccCCCc
Confidence            9999999999999999999999999999999999999999999998753   2358999999999999999999999999


Q ss_pred             CCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccccccccccccCCccch
Q 006042          567 SCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNI  646 (663)
Q Consensus       567 s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~  646 (663)
                      +|.++.|.+  +..|++++|||||+||+.+++.  +.++|+||++||+++|++||+|++++++|+||++|||+||+|+++
T Consensus       351 s~~~~~~~~--~~~s~~~~TAwAl~aL~~ag~~--~~~~v~rgv~~L~~~Q~~~G~W~~~~~~g~f~~~~~l~Y~~Y~~~  426 (448)
T d1w6ka1         351 SCEERRYVQ--SAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNI  426 (448)
T ss_dssp             HHHHTSCCB--CSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEEECCTTHHHH
T ss_pred             cccCcccCC--CCCCcHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHccCCCCCCCCCceeeeecccceeecCCcchH
Confidence            988888875  7789999999999999999865  346899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 006042          647 FPLRALAEYRKRVPLP  662 (663)
Q Consensus       647 ~pl~AL~~y~~~~~~~  662 (663)
                      |||||||||+++++.+
T Consensus       427 fpl~AL~ry~~~~~~~  442 (448)
T d1w6ka1         427 FPIWALGRFSQLYPER  442 (448)
T ss_dssp             HHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHhCCcc
Confidence            9999999999998653
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure