Citrus Sinensis ID: 006056

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660---
MRVVLVDFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKERKEAEENERKEKSESGEKAMQEKNKAEENAYSDDKPDDVRHDDKVGVLEEESFDQGKAENVDEEPATEAKQIGTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVPETSSDAESQMPPEAEKKEEKNLENGVSENTEELSREELGRLVASRWTGEKTEKQSGEGGAIANDDQGEDVPEYNHDDEEDRYATDTDDDSERYDTEKYDDNDVEDDIDEPYREEDHDYTSTSYKTDVDDDLDMSEMTTPSSPSWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQELQHKLDELNKKQPQHHDEL
cccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEcccccEEcccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccEEEEEEccccEEEccccccccccccccccccEEEEEEccccccccccccEEEEEEEEcccccEEEcccccccEEEEEEccccccccHHHHHHHHHHHHHccccccccccc
cccEHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccccEEEccccEEEcHHHcccccccccccccccccccccccEEEEEcccccccEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccHHcccccccccccccccHHHHccEEEEccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccEEEEEccEEEEEEEEcccEEEcccccccEEcEEcccccccEEEEEEcccccccccccEEEEEEEEccccEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccc
MRVVLVDFRFTYAIVLSLLWVSSsvigrsnaassllndpfygispqdenyyktssntikckdgskKFAKtqlnddycdcpdgtdepgtsacpngkfycqnaghsplmifsskvndgicdccdgsdeydgkvkcpntcweAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKERKEAEENERKEKSESGEKAMQEKNKAeenaysddkpddvrhddkvgvleeesfdqgkaenvdeepateakqigtsqnlgtpvngveQHATEEMEqsassrskdgsstvpetssdaesqmppeaekkeeknlengvsenteeLSREELGRLVASrwtgektekqsgeggaianddqgedvpeynhddeedryatdtdddserydtekyddndveddidepyreedhdytstsyktdvdddldmsemttpsspsWLEKIQQTVRNILQAVNlfqtpvdksdaarVRKEYDESSDKLSKIQSRISSLTQKLkhefgpekefysfyghcfeskqnkyvykvcpykkatqeeghsttrlgswdkfedSYHIMLFsngdkcwngpdrsmkVRLRcglknevtdvdepsrcEYVALLytpavcseEKLQELQHKLDElnkkqpqhhdel
MRVVLVDFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKTssntikckdgskKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATyqegvllrkKEIEQAKQNLVkdeaelsnlkneeKILKGLVQQLKERKEQIEkaeekerlqrekeekerkeaeenerkeksesgekaMQEKNKaeenaysddkpddvRHDDKVGVLEeesfdqgkaenvdeEPATEakqigtsqnlgtpVNGVEQHATEEMeqsassrskdgsstvpetssdaesqmppeaekkeeknlengvsenteelsreeLGRLvasrwtgektekqsgeggaianddqgedvpeynhddeedryatdtdddserydtekyddndveddidepyreedhdytstsyktdvdddldMSEMTTPSSPSWLEKIQQTVRNILQAVnlfqtpvdksdaarvrkeydessdklskiQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKkatqeeghsttrlgswDKFEDSYHIMLFsngdkcwngpDRSMKVRLRCGlknevtdvdepsrCEYVALLYTPAVCSEEKLQELQHKLDelnkkqpqhhdel
MRVVLVDFRFTYAIvlsllwvsssvIGRSNAASSLLNDPFYGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIekaeekerlqrekeekerkeaeenerkeksesgekAMQEKNKAEENAYSddkpddvrhddkvGVLEEESFDQGKAENVDEEPATEAKQIGTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVPETSSDAESQMPPEAekkeekNLENGVSENTEELSREELGRLVASRWTGEKTEKQSGEGGAIANDDQGEDVPEYNHDDEEDRYATDTDDDSERYdtekyddndveddidePYREEDHDYTSTSYKTDVDDDLDMSEMTTPSSPSWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQELQHKLDELNKKQPQHHDEL
**VVLVDFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISP***NYY*******************QLNDDYCDC**********ACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRK**********************************************************************************************************************************************************************************************************************************************************************************************************************WLEKIQQTVRNILQAVNLFQT***************************************GPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQ***HSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCS*************************
******DFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEA****************************************************************************************************************************************GKAENVDEEPATEAKQIGTSQNLGTPVNGVE********************************************************************************************************YATDTDDD*********************************************************KIQQT*RN************************************************FGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEK**********************
MRVVLVDFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQI*******************************************************VRHDDKVGVLEEE*******************QIGTSQNLGTPVNGVE**********************************************************EELGRLVASRW************GAIANDDQGEDVPEYNHDDEEDRYATDTDDDSERYDTEKYDDNDVEDDIDEPYREEDHDYTSTSYKTDVDDDLDMSEMTTPSSPSWLEKIQQTVRNILQAVNLFQTPVDK*********************SRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKA*********RLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQELQHKLDELN**********
*RVVLVDFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKE*K**********************************************************************************************************************************************EELGRLVASRWT*******************************************************************************************PSSPSWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQELQHKLDELNKKQ*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRVVLVDFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAYSDDKPDDVRHDDKVGVLEEESFDQGKAENVDEEPATEAKQIGTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVPETSSDAESQMPPEAEKKEEKNLENGVSENTEELSREELGRLVASRWTGEKTEKQSGEGGAIANDDQGEDVPEYNHDDEEDRYATDTDDDSERYDTEKYDDNDVEDDIDEPYREEDHDYTSTSYKTDVDDDLDMSEMTTPSSPSWLEKIQQTVRNILQAVNLFQTPVDKSDxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPxxxxxxxxxxxxxxxxxxxxxxxxxxxxL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query663 2.2.26 [Sep-21-2011]
O08795521 Glucosidase 2 subunit bet yes no 0.300 0.381 0.405 2e-37
P14314528 Glucosidase 2 subunit bet yes no 0.286 0.359 0.418 2e-36
Q28034533 Glucosidase 2 subunit bet yes no 0.235 0.292 0.439 6e-32
Q9USH8506 Glucosidase 2 subunit bet yes no 0.283 0.371 0.371 4e-25
Q04924702 Glucosidase 2 subunit bet yes no 0.188 0.178 0.337 6e-14
Q58CS8 306 N-acetylglucosamine-1-pho no no 0.159 0.346 0.333 9e-10
Q6S5C2 307 N-acetylglucosamine-1-pho no no 0.158 0.342 0.336 9e-10
Q9UJJ9305 N-acetylglucosamine-1-pho no no 0.185 0.403 0.302 2e-09
>sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1 Back     alignment and function desciption
 Score =  157 bits (398), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/202 (40%), Positives = 125/202 (61%), Gaps = 3/202 (1%)

Query: 42  GISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNA 101
           G+S  + ++Y+  S    C DG+      Q+NDDYCDC DG+DEPGT+ACPNG F+C N 
Sbjct: 22  GVSLSNHHFYE-ESKPFTCLDGTATIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNT 80

Query: 102 GHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLL 161
           G+ PL I SS+VNDG+CDCCDG+DEY+    C NTC E G+  ++ L++     +EG  L
Sbjct: 81  GYKPLYILSSRVNDGVCDCCDGTDEYNSGTVCENTCREKGRKEKESLQQLAEVTREGFRL 140

Query: 162 RKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKE 221
           +K  IE+ K    + +++L  L+  +K L+  V+ L+  KE+ E+ E++ + Q  K  +E
Sbjct: 141 KKILIEEWKTAREEKQSKLLELQAGKKSLEDQVETLRAAKEEAERPEKEAKDQHRKLWEE 200

Query: 222 RKEAEENERKEKSESGEKAMQE 243
           ++ A +  R++  E    A QE
Sbjct: 201 QQAAAKARREQ--ERAASAFQE 220
Regulatory subunit of glucosidase II.
Mus musculus (taxid: 10090)
>sp|P14314|GLU2B_HUMAN Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2 Back     alignment and function description
>sp|Q28034|GLU2B_BOVIN Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH PE=2 SV=1 Back     alignment and function description
>sp|Q9USH8|GLU2B_SCHPO Glucosidase 2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gtb1 PE=1 SV=1 Back     alignment and function description
>sp|Q04924|GLU2B_YEAST Glucosidase 2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GTB1 PE=1 SV=1 Back     alignment and function description
>sp|Q58CS8|GNPTG_BOVIN N-acetylglucosamine-1-phosphotransferase subunit gamma OS=Bos taurus GN=GNPTG PE=1 SV=4 Back     alignment and function description
>sp|Q6S5C2|GNPTG_MOUSE N-acetylglucosamine-1-phosphotransferase subunit gamma OS=Mus musculus GN=Gnptg PE=2 SV=1 Back     alignment and function description
>sp|Q9UJJ9|GNPTG_HUMAN N-acetylglucosamine-1-phosphotransferase subunit gamma OS=Homo sapiens GN=GNPTG PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query663
359478816638 PREDICTED: glucosidase 2 subunit beta-li 0.959 0.996 0.634 0.0
255564808683 glucosidase II beta subunit, putative [R 0.968 0.939 0.629 0.0
224075960645 predicted protein [Populus trichocarpa] 0.930 0.956 0.641 0.0
224056927635 predicted protein [Populus trichocarpa] 0.948 0.990 0.621 0.0
356521616634 PREDICTED: glucosidase 2 subunit beta-li 0.918 0.960 0.609 0.0
357475089639 Glucosidase ii beta subunit [Medicago tr 0.941 0.976 0.580 0.0
356577145650 PREDICTED: LOW QUALITY PROTEIN: glucosid 0.930 0.949 0.589 0.0
449519036641 PREDICTED: LOW QUALITY PROTEIN: glucosid 0.921 0.953 0.556 0.0
297796507653 calmodulin-binding protein [Arabidopsis 0.962 0.977 0.591 0.0
30696733647 protein kinase C substrate 80K-H [Arabid 0.914 0.936 0.601 0.0
>gi|359478816|ref|XP_002283762.2| PREDICTED: glucosidase 2 subunit beta-like [Vitis vinifera] gi|297746510|emb|CBI16566.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/665 (63%), Positives = 527/665 (79%), Gaps = 29/665 (4%)

Query: 1   MRVVLVDFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKTSSNTIKC 60
           M++ +V       ++L +L++S   IGRS + S L  +PF GI+PQDENYYKTSS   KC
Sbjct: 1   MKIYIVIHNL--FLILGVLFISQ--IGRSASKSLLSTNPFLGIAPQDENYYKTSSEIFKC 56

Query: 61  KDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDC 120
           KDGSKK  + Q+NDD+CDCPD +DEPGTSACP GKFYC+NAGH PL++FSS+VNDGICDC
Sbjct: 57  KDGSKKLNRAQVNDDFCDCPDASDEPGTSACPGGKFYCRNAGHVPLLLFSSRVNDGICDC 116

Query: 121 CDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAEL 180
           CDGSDEYDGKVKCPNTCWEAGKVARDKLKKKI TY+EGV LRK++IEQAK  + K+E EL
Sbjct: 117 CDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIVTYKEGVTLRKQQIEQAKLAIAKEEEEL 176

Query: 181 SNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKERKEAEENERKEKSESGEKA 240
           S LK+EEKILKGLVQQLK+RKEQIEKAEEKERLQ+E+EEK+R+EAEE   KEKS++ ++A
Sbjct: 177 SKLKSEEKILKGLVQQLKDRKEQIEKAEEKERLQKEEEEKKRREAEEEANKEKSKAEKEA 236

Query: 241 MQEKNKAEENAYSDDKPDDVRHDDKVGVLEEESFDQGKAENVDEEPATEAKQIGTSQNLG 300
            QEKN+ +E   S+++P +  HDDK+GVL+++  ++ K+ +V      E +    S+N  
Sbjct: 237 NQEKNEVKEQVGSEEEPMESTHDDKIGVLDQD-VEEDKSNSV-----AEVEHTDKSEN-A 289

Query: 301 TPVNGVEQHATEEMEQSASSRSKDGSSTVPETSSDAESQMPPEAEKKEEKNLENGVSENT 360
           +P +G+EQHA E          K+ S  V ET   A +++ P +++  ++  EN V+ENT
Sbjct: 290 SPTDGIEQHAAE---------GKEESPVVHETDLHAGNEVSPTSDQATKQ--ENDVAENT 338

Query: 361 EELSREELGRLVASRWTGEKTEKQSGEGGAIAND--DQGEDVPEYNHDDEEDRYATDTDD 418
           E LSREELGRLVASRWTGE T + + E  A+ +D  +  E+ PE  H +E D YA++TDD
Sbjct: 339 EGLSREELGRLVASRWTGENTGQHTEEVDAVKHDHHESHEETPEDTHAEEYDGYASETDD 398

Query: 419 DSERYDTEKYDDNDVEDDIDEPYREEDHDYTSTSYKTDVDDDLDMSEMTTPSSPSWLEKI 478
           DS+RYD     ++D+ED +DE + E+DH  +S  YK+D +D+ D S++T+ S+PSWLEKI
Sbjct: 399 DSQRYD-----NDDMEDPVDEDFGEDDHYDSSPPYKSDTEDESDFSDITSTSNPSWLEKI 453

Query: 479 QQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKE 538
           QQTVRNIL AVNLFQTPVDKS+AA +RKEYDESS KLSK+QSRISSLTQKLKH+FGPEKE
Sbjct: 454 QQTVRNILNAVNLFQTPVDKSEAAHIRKEYDESSAKLSKMQSRISSLTQKLKHDFGPEKE 513

Query: 539 FYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWN 598
           FYSFY  CFESK+NKYVYK+CP+K+A+QEEGHSTTRLG WDKFEDSY  MLFSNG+KCWN
Sbjct: 514 FYSFYDQCFESKENKYVYKLCPFKQASQEEGHSTTRLGRWDKFEDSYRTMLFSNGEKCWN 573

Query: 599 GPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQELQHKLDELNKKQPQ 658
           GPDRS+KV+LRCGLKNEVTDVDEPSRCEYVALL TPA+C EEKL+ELQ KL+ +N++QPQ
Sbjct: 574 GPDRSLKVKLRCGLKNEVTDVDEPSRCEYVALLSTPALCLEEKLKELQQKLELMNQEQPQ 633

Query: 659 HHDEL 663
             DEL
Sbjct: 634 GRDEL 638

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564808|ref|XP_002523398.1| glucosidase II beta subunit, putative [Ricinus communis] gi|223537348|gb|EEF38977.1| glucosidase II beta subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224075960|ref|XP_002304848.1| predicted protein [Populus trichocarpa] gi|222842280|gb|EEE79827.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056927|ref|XP_002299093.1| predicted protein [Populus trichocarpa] gi|222846351|gb|EEE83898.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356521616|ref|XP_003529450.1| PREDICTED: glucosidase 2 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|357475089|ref|XP_003607830.1| Glucosidase ii beta subunit [Medicago truncatula] gi|355508885|gb|AES90027.1| Glucosidase ii beta subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|356577145|ref|XP_003556688.1| PREDICTED: LOW QUALITY PROTEIN: glucosidase 2 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|449519036|ref|XP_004166541.1| PREDICTED: LOW QUALITY PROTEIN: glucosidase 2 subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297796507|ref|XP_002866138.1| calmodulin-binding protein [Arabidopsis lyrata subsp. lyrata] gi|297311973|gb|EFH42397.1| calmodulin-binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30696733|ref|NP_568840.3| protein kinase C substrate 80K-H [Arabidopsis thaliana] gi|10177834|dbj|BAB11263.1| unnamed protein product [Arabidopsis thaliana] gi|332009370|gb|AED96753.1| protein kinase C substrate 80K-H [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query663
TAIR|locus:2161078647 PSL4 "PRIORITY IN SWEET LIFE 4 0.553 0.567 0.563 6.2e-181
DICTYBASE|DDB_G0271120524 DDB_G0271120 "protein kinase C 0.235 0.297 0.466 3.1e-70
RGD|1309628525 Prkcsh "protein kinase C subst 0.242 0.306 0.438 4.5e-67
MGI|MGI:107877521 Prkcsh "protein kinase C subst 0.242 0.309 0.438 6.5e-67
ZFIN|ZDB-GENE-040426-770529 prkcsh "protein kinase C subst 0.241 0.302 0.447 6.7e-67
UNIPROTKB|K7ELL7535 PRKCSH "Glucosidase 2 subunit 0.242 0.300 0.450 7.1e-67
UNIPROTKB|P14314528 PRKCSH "Glucosidase 2 subunit 0.242 0.304 0.450 2.9e-65
UNIPROTKB|E2RKK6537 PRKCSH "Uncharacterized protei 0.242 0.299 0.444 1e-64
UNIPROTKB|F1S596537 PRKCSH "Uncharacterized protei 0.242 0.299 0.438 1.3e-63
UNIPROTKB|Q28034533 PRKCSH "Glucosidase 2 subunit 0.242 0.302 0.438 2.8e-62
TAIR|locus:2161078 PSL4 "PRIORITY IN SWEET LIFE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1046 (373.3 bits), Expect = 6.2e-181, Sum P(2) = 6.2e-181
 Identities = 218/387 (56%), Positives = 271/387 (70%)

Query:   283 DEEPATEAKQIGTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVPETSSDAESQMPP 342
             DEEPA E +         T  N  ++H  E  E+S SS  +D SS   E+ +D  ++   
Sbjct:   275 DEEPAAEGEPTSILDE-ATHTNPADEHVVERKEESTSS--EDSSSPTDESQNDGSAE--- 328

Query:   343 EAXXXXXXNLENGVSENTEELSREELGRLVASRWTGEKTEKQSGEGGAIANDDQG--EDV 400
             +        +E+ V+E  EELS+EELGRLVASRWTGEK++K +        DDQ   E  
Sbjct:   329 KEESDEVKKVEDFVTEKKEELSKEELGRLVASRWTGEKSDKPTEADDIPKADDQENHEHT 388

Query:   401 PEYNHD-DEEDRYATDTDDDSERYXXXXXXXXXXXXXXXXPYREE-DHDYTSTSYKTDVD 458
             P   H+ DE+D + +D D+D+                    Y EE  HD +S+SYK+D D
Sbjct:   389 PITAHEADEDDGFVSDGDEDTS-----DDGKYSDHEPEDDSYEEEYRHD-SSSSYKSDAD 442

Query:   459 DDLDMSEMTTPSSPSWLEKIQQTVRNILQAVNLFQT-PVDKSDAARVRKEYDESSDKLSK 517
             DD+D SE T  S+P+WLEKIQ+TV+NIL AVNLFQT PVDKS+A RVRKEYDESS KL+K
Sbjct:   443 DDVDFSETT--SNPTWLEKIQKTVKNILLAVNLFQTTPVDKSEADRVRKEYDESSSKLNK 500

Query:   518 IQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGS 577
             IQSRISSL +KLK +FGPEKEFYSF+G CFESKQ KY YKVC YK+ATQEEG+S TRLG 
Sbjct:   501 IQSRISSLEKKLKQDFGPEKEFYSFHGRCFESKQGKYTYKVCAYKEATQEEGYSKTRLGE 560

Query:   578 WDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVC 637
             WDKFE+SY  M ++NG+KCWNGPDRS+KV+LRCGLKNE+ DVDEPSRCEY A+L TPA C
Sbjct:   561 WDKFENSYQFMSYTNGEKCWNGPDRSLKVKLRCGLKNELMDVDEPSRCEYAAILSTPARC 620

Query:   638 SEEKLQELQHKLDEL-NKKQPQHHDEL 663
              E+KL+ELQ KL++L N+ +PQ+HDEL
Sbjct:   621 LEDKLKELQQKLEKLMNQDKPQNHDEL 647
GO:0009507 "chloroplast" evidence=ISM
GO:0005516 "calmodulin binding" evidence=TAS;IPI
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0009086 "methionine biosynthetic process" evidence=RCA
GO:0030244 "cellulose biosynthetic process" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
DICTYBASE|DDB_G0271120 DDB_G0271120 "protein kinase C substrate 80K-H homolog" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1309628 Prkcsh "protein kinase C substrate 80K-H" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107877 Prkcsh "protein kinase C substrate 80K-H" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-770 prkcsh "protein kinase C substrate 80K-H" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|K7ELL7 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P14314 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RKK6 PRKCSH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S596 PRKCSH "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q28034 PRKCSH "Glucosidase 2 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query663
pfam12999176 pfam12999, PRKCSH-like, Glucosidase II beta subuni 8e-35
pfam13015154 pfam13015, PRKCSH_1, Glucosidase II beta subunit-l 2e-22
pfam0791573 pfam07915, PRKCSH, Glucosidase II beta subunit-lik 2e-07
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 3e-07
PTZ001081388 PTZ00108, PTZ00108, DNA topoisomerase 2-like prote 7e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-06
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-05
pfam10211189 pfam10211, Ax_dynein_light, Axonemal dynein light 4e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 4e-05
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 4e-05
TIGR03346852 TIGR03346, chaperone_ClpB, ATP-dependent chaperone 5e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 6e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-04
PTZ003411136 PTZ00341, PTZ00341, Ring-infected erythrocyte surf 1e-04
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 2e-04
pfam09756189 pfam09756, DDRGK, DDRGK domain 2e-04
COG3064387 COG3064, TolA, Membrane protein involved in colici 2e-04
TIGR02794346 TIGR02794, tolA_full, TolA protein 2e-04
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 3e-04
PRK05035695 PRK05035, PRK05035, electron transport complex pro 3e-04
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 3e-04
PTZ003411136 PTZ00341, PTZ00341, Ring-infected erythrocyte surf 6e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 0.001
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.002
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.002
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 0.002
pfam03344715 pfam03344, Daxx, Daxx Family 0.003
PRK00106535 PRK00106, PRK00106, hypothetical protein; Provisio 0.003
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.003
TIGR02794346 TIGR02794, tolA_full, TolA protein 0.004
COG1579239 COG1579, COG1579, Zn-ribbon protein, possibly nucl 0.004
COG4026290 COG4026, COG4026, Uncharacterized protein containi 0.004
>gnl|CDD|193472 pfam12999, PRKCSH-like, Glucosidase II beta subunit-like Back     alignment and domain information 
 Score =  129 bits (327), Expect = 8e-35
 Identities = 69/169 (40%), Positives = 93/169 (55%), Gaps = 14/169 (8%)

Query: 38  DPFYGISPQDENYYKTSSN-TIKCKDGSK-KFAKTQLNDDYCDCPDGTDEPGTSACPNGK 95
               G+SP + + Y+   N   KC + S+ K +  Q+NDDYCDCPDG+DEPGT+AC NGK
Sbjct: 17  GKLRGVSPDNLHLYQPDENGNWKCLNHSEIKLSFDQVNDDYCDCPDGSDEPGTNACSNGK 76

Query: 96  FYCQNAGHSPLMIFSSKVNDGICD---CCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKI 152
           FYC N G  P  I S KV+DG+CD   CCDGSDE  G  KCPN C E  +   + L +  
Sbjct: 77  FYCANEGFIPGYIPSFKVDDGVCDYDICCDGSDEALG--KCPNKCGEIARQFEEYLTEHN 134

Query: 153 ATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERK 201
            + + G L  K+ +  A Q    +      LK   K L+  +   ++R 
Sbjct: 135 NSVKNG-LKIKEGLLLAAQKKRDE------LKKRLKELEDSLPAKQQRL 176

The sequences found in this family are similar to a region found in the beta-subunit of glucosidase II, which is also known as protein kinase C substrate 80K-H (PRKCSH). The enzyme catalyzes the sequential removal of two alpha-1,3-linked glucose residues in the second step of N-linked oligosaccharide processing. The beta subunit is required for the solubility and stability of the heterodimeric enzyme, and is involved in retaining the enzyme within the endoplasmic reticulum. Length = 176
>gnl|CDD|205196 pfam13015, PRKCSH_1, Glucosidase II beta subunit-like protein Back     alignment and domain information
>gnl|CDD|219639 pfam07915, PRKCSH, Glucosidase II beta subunit-like protein Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family Back     alignment and domain information
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 663
KOG2397480 consensus Protein kinase C substrate, 80 KD protei 100.0
PF12999176 PRKCSH-like: Glucosidase II beta subunit-like 100.0
PF13015154 PRKCSH_1: Glucosidase II beta subunit-like protein 100.0
KOG3394 502 consensus Protein OS-9 [General function predictio 99.74
PF12999176 PRKCSH-like: Glucosidase II beta subunit-like 99.23
PF0791581 PRKCSH: Glucosidase II beta subunit-like protein; 99.0
cd0011235 LDLa Low Density Lipoprotein Receptor Class A doma 98.41
PF0005737 Ldl_recept_a: Low-density lipoprotein receptor dom 98.38
PF0005737 Ldl_recept_a: Low-density lipoprotein receptor dom 98.3
cd0011235 LDLa Low Density Lipoprotein Receptor Class A doma 98.29
smart0019233 LDLa Low-density lipoprotein receptor domain class 98.17
smart0019233 LDLa Low-density lipoprotein receptor domain class 98.12
KOG2397480 consensus Protein kinase C substrate, 80 KD protei 97.84
PF02157278 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 97.45
KOG1215877 consensus Low-density lipoprotein receptors contai 96.85
KOG1215877 consensus Low-density lipoprotein receptors contai 96.52
PF00878145 CIMR: Cation-independent mannose-6-phosphate recep 96.24
KOG3394502 consensus Protein OS-9 [General function predictio 95.58
KOG4504 370 consensus Cation-independent mannose-6-phosphate r 94.66
PF09451268 ATG27: Autophagy-related protein 27; InterPro: IPR 93.97
PF10211189 Ax_dynein_light: Axonemal dynein light chain; Inte 91.91
KOG4001259 consensus Axonemal dynein light chain [Cytoskeleto 87.41
>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1e-74  Score=622.69  Aligned_cols=448  Identities=37%  Similarity=0.611  Sum_probs=317.3

Q ss_pred             CCCCCCCcccccCCCCceecCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCcccCCCCC
Q 006056           41 YGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDC  120 (663)
Q Consensus        41 ~Gv~~~~~~~y~~~~~~F~C~~gs~~Ip~s~vcDg~cDC~DGSDE~gt~aC~~~~f~C~n~g~~~~~Ip~s~VcDg~cDC  120 (663)
                      .|++..+..+|. .+..|+|++|+..|+++++||+||||+||||||||+|||++.|||.|.||+|.+||+++|+||||||
T Consensus        29 v~~~~~~~~~y~-as~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGtsACpngkF~C~N~G~~p~~i~ssrV~DGICDC  107 (480)
T KOG2397|consen   29 VALSIENLYLYD-ASSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDC  107 (480)
T ss_pred             cccccccccccc-cccceeeccCCcccCHHHhccccccCCCCCCCCccccCCCCceeeeecCCCceeeechhccCccccc
Confidence            555555777777 5669999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006056          121 CDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKER  200 (663)
Q Consensus       121 cDGSDE~~~~~~C~n~C~e~g~~~r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~  200 (663)
                      ||||||+.+++.|||+|.++|+++|..+++...+++.|+++|.+++.++++.+.+.+..+..|..++..++....+|+..
T Consensus       108 CDgSDE~~Sgv~c~ntC~e~gR~~r~~~~~~~~~yk~G~e~R~~~i~e~k~~~~~~e~~l~~l~~e~~~l~~~~~~l~~~  187 (480)
T KOG2397|consen  108 CDGSDEYLSGVDCPNTCIELGRAARIMLEKDAEIYKPGKEIREELLDESKTAREAFEAPLDKLSDELKVLEGDGEQLRST  187 (480)
T ss_pred             ccCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcccccchhhhcchhhhhhHHhhccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhHhhhhccCCCCCCCccccccccccccccccccccc
Q 006056          201 KEQIEKAEEKERLQREKEEKERKEAEENERKEKSESGEKAMQEKNKAEENAYSDDKPDDVRHDDKVGVLEEESFDQGKAE  280 (663)
Q Consensus       201 ke~~e~~e~~er~~~~k~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~  280 (663)
                      +++++..++.++.....+.+..+.+     ..+  +.+.   ..+.       +.+-......+ +.-|       +.  
T Consensus       188 ~e~~E~~~~~e~~~~~~~~~~~~~~-----~~~--~~~~---~~~~-------e~d~~~~~~~~-~tel-------~~--  240 (480)
T KOG2397|consen  188 KEKGEFDERKEKDQIQGQEELLKAA-----RSR--AQAD---LVFD-------ELDDDTNLLVE-LTEL-------YT--  240 (480)
T ss_pred             HHHHHHHHHHhhccccchHHHHHHH-----Hhh--hcch---hcCc-------cccCccccccc-cccc-------cc--
Confidence            9977776555433322222211111     100  0000   0000       00000000000 0000       00  


Q ss_pred             CCCCcchhhhhhccccCCCCCCCcCcccchhhHhhhhhcccCCCCCCCCCCCCcccccCCCchhhhhhhhhhccCCccch
Q 006056          281 NVDEEPATEAKQIGTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVPETSSDAESQMPPEAEKKEEKNLENGVSENT  360 (663)
Q Consensus       281 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  360 (663)
                         .     +..+       ..+.          +.|                                  ...++...+
T Consensus       241 ---~-----~~~d-------~~~~----------~~i----------------------------------~~~E~k~~~  261 (480)
T KOG2397|consen  241 ---C-----TLLD-------CDKD----------GKI----------------------------------LSFEIKRLK  261 (480)
T ss_pred             ---C-----cccc-------cccc----------ccc----------------------------------cHHHHHHhh
Confidence               0     0000       0000          000                                  001111223


Q ss_pred             hhhhhhhhhhhhcccccccccccccCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCccccccccCCCCCCCCCCCCC
Q 006056          361 EELSREELGRLVASRWTGEKTEKQSGEGGAIANDDQGEDVPEYNHDDEEDRYATDTDDDSERYDTEKYDDNDVEDDIDEP  440 (663)
Q Consensus       361 ~~~~~~d~~~~~~~~w~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (663)
                      +...+.++..|....|..++..+.+.....        +++.+.. +.           +.....+..+++. ..+.   
T Consensus       262 ~~~~~~~~~~~~~~~~s~l~~l~~t~~~~~--------~~~~~~~-~~-----------~~~~~~~~~~~~~-~~~~---  317 (480)
T KOG2397|consen  262 GELTQHDADSFRDTETSNLEHLYHTTPRPE--------SPEQREE-EP-----------TLRGVLNSPSEEP-RHDE---  317 (480)
T ss_pred             ccccccCccccccchhhhhHhhhccCCCcc--------Ccccccc-cc-----------cccccccCCcccc-chhh---
Confidence            344455666677777777665554211100        0011110 00           0001111111100 0000   


Q ss_pred             ccccCCCcccccccCCCCCcccccccCCCCCCchHHHHHHHHHHHHHhhccCCCCcChhhHHHHHHHHHHHHHHHHHHHH
Q 006056          441 YREEDHDYTSTSYKTDVDDDLDMSEMTTPSSPSWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQS  520 (663)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~ar~~~~~~e~~l~~l~~  520 (663)
                       ++-.++           +..+....  ..+|                       .  -+|+.||++|+++++.+++|+.
T Consensus       318 -~~~~~d-----------~~~~~~~~--~s~p-----------------------~--~~a~~ar~~~de~~~~~k~l~~  358 (480)
T KOG2397|consen  318 -EDINSD-----------DEGDSGDT--DSPP-----------------------S--LQASEARNELDEAERKLKDLDE  358 (480)
T ss_pred             -hcccCC-----------cccccCCC--CCch-----------------------H--HHHHHHHHHHHHHHHHHHHHHH
Confidence             000011           01111000  0112                       1  2678999999999999999999


Q ss_pred             HHHHHHhhhcccCCchhhhhhhccceEEeecCeEEEEeecCCceeeccCCCceeeccccccCCCeeEEEecCCccCCCCC
Q 006056          521 RISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGP  600 (663)
Q Consensus       521 ~i~~~~~~L~~d~G~~~~~~~L~~~C~~~~~g~YtYelC~~~~v~Q~~g~~~~~LG~~~~~~~~y~~m~y~~G~~CwNGp  600 (663)
                      +|+++++.++.||| ..+|++++|+||....|+|||.||||+.++|+    .+..|.|.+...  .+|.|+||++|||||
T Consensus       359 ~i~~l~~~~~~~~g-~~e~~~~~~~c~~~~~~~Y~Y~~c~~~~~tq~----~~~~~~w~~~e~--~~m~y~nG~~CWnGP  431 (480)
T KOG2397|consen  359 EIRELEDELNGDFG-LLEFAALKGQCFDRELGEYTYTVCPFKPVTQK----SIYGGSWSGPEG--SVMKYENGQQCWNGP  431 (480)
T ss_pred             HHHHHHHHhhcccc-HHHHHHHhcceeeeccCcEEEEEccccccccc----ccccccccCCcc--ceeeecCccccccCC
Confidence            99999999999999 89999999999999999999999999999995    555666776655  799999999999999


Q ss_pred             CceeEEEEEeCCCCceeeecCCCccEEEEEEecccCCCchhHHHH
Q 006056          601 DRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQEL  645 (663)
Q Consensus       601 ~Rst~V~l~Cg~~~~i~sV~Ep~kC~Y~~~~~TPa~C~~~~~~~l  645 (663)
                      +|||+|.+.||.+|+|++|+||+||+|.|+|.|||+|.++.+++.
T Consensus       432 ~RSa~v~v~Cg~e~~i~sv~Ep~kCeY~~~~~tPaaC~~~~~~~~  476 (480)
T KOG2397|consen  432 NRSATVTVRCGLENEIVSVTEPSKCEYLFELVTPAACNEDFLKEP  476 (480)
T ss_pred             CcceeEEEEecccceeeeccccccceeeeEecccccCCcchhhcc
Confidence            999999999999999999999999999999999999998876443

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like Back     alignment and domain information
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein Back     alignment and domain information
>KOG3394 consensus Protein OS-9 [General function prediction only] Back     alignment and domain information
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like Back     alignment and domain information
>PF07915 PRKCSH: Glucosidase II beta subunit-like protein; InterPro: IPR012913 The sequences found in this family are similar to a region found in the beta-subunit of glucosidase II (P14314 from SWISSPROT), which is also known as protein kinase C substrate 80K-H (PRKCSH) Back     alignment and domain information
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure Back     alignment and domain information
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells Back     alignment and domain information
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells Back     alignment and domain information
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure Back     alignment and domain information
>smart00192 LDLa Low-density lipoprotein receptor domain class A Back     alignment and domain information
>smart00192 LDLa Low-density lipoprotein receptor domain class A Back     alignment and domain information
>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms] Back     alignment and domain information
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B Back     alignment and domain information
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms] Back     alignment and domain information
>PF00878 CIMR: Cation-independent mannose-6-phosphate receptor repeat; InterPro: IPR000479 The cation-independent mannose-6-phosphate receptor is a type I membrane protein responsible for transport of phosphorylated lysosomal enzymes from the golgi complex and the cell surface to lysosomes Back     alignment and domain information
>KOG3394 consensus Protein OS-9 [General function prediction only] Back     alignment and domain information
>KOG4504 consensus Cation-independent mannose-6-phosphate receptor CI-MPR [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation [] Back     alignment and domain information
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility Back     alignment and domain information
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query663
3aih_A124 Protein OS-9; beta barrel, lectin, sugar binding p 2e-22
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 4e-08
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 8e-08
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 2e-07
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 8e-07
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 6e-05
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 1e-04
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 8e-08
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 3e-07
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 7e-07
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 5e-06
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 2e-05
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 3e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-07
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 5e-04
2fyj_A82 Low-density lipoprotein receptor-related protein 1 3e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-04
2fcw_B80 LDL receptor, low-density lipoprotein receptor; pr 6e-07
2xrc_A565 Human complement factor I; immune system, hydrolas 2e-06
2xrc_A565 Human complement factor I; immune system, hydrolas 9e-05
2l21_A154 Cation-independent mannose-6-phosphate receptor; g 2e-06
2kva_A148 Cation-independent mannose-6-phosphate receptor; t 4e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-05
2a6h_D 1524 DNA-directed RNA polymerase beta' chain; RNA polym 4e-05
1q25_A432 CI, cation-independent mannose 6-phosphate recepto 1e-04
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 2e-04
2l2g_A151 IGF2R domain 11; insulin-like growth factor 2, man 2e-04
2v5o_A627 Cation-independent mannose-6-phosphate receptor; m 6e-04
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 9e-04
>3aih_A Protein OS-9; beta barrel, lectin, sugar binding protein; HET: BMA MAN; 2.10A {Homo sapiens} Length = 124 Back     alignment and structure
 Score = 92.2 bits (228), Expect = 2e-22
 Identities = 30/121 (24%), Positives = 42/121 (34%), Gaps = 27/121 (22%)

Query: 544 GHCFESKQNKYVYKVCPYKKATQ------EEGHSTTRLGSWDKFEDS------------- 584
             C    ++ + Y+ C  +   Q      E       LG +    D              
Sbjct: 3   APCLLKTKDWWTYEFCYGRHIQQYHMEDSEIKGEVLYLGYYQSAFDWDDETAKASKQHRL 62

Query: 585 --YHIMLFSNGDKC-WNGPDRSMKVRLRCG-----LKNEVTDVDEPSRCEYVALLYTPAV 636
             YH   + NG KC  NG  R  +VR  C        + +  VDEP  C YV  + TP +
Sbjct: 63  KRYHSQTYGNGSKCDLNGRPREAEVRFLCDEGAGISGDYIDRVDEPLSCSYVLTIRTPRL 122

Query: 637 C 637
           C
Sbjct: 123 C 123
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80 Back     alignment and structure
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565 Back     alignment and structure
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565 Back     alignment and structure
>2l21_A Cation-independent mannose-6-phosphate receptor; genomic imprinting, insulin-like growth factor 2, mannose 6 receptor, protein evolution; NMR {Gallus gallus} Length = 154 Back     alignment and structure
>2kva_A Cation-independent mannose-6-phosphate receptor; transport, lysosome, sugar binding, glyco membrane, phosphoprotein, transmembrane, disulfide bond; NMR {Bos taurus} PDB: 2kvb_A Length = 148 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 Back     alignment and structure
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P receptor, CI-MPR; P-lectin, protein transport,S binding protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP: b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A* Length = 432 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256 Back     alignment and structure
>2l2g_A IGF2R domain 11; insulin-like growth factor 2, mannose 6 phosphate receptor, imprinting, protein evolution, signaling protein; NMR {Monodelphis domestica} Length = 151 Back     alignment and structure
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane, lysosome, transport, beta barrel, phosphorylation, fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A* 2v5n_A* Length = 627 Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Length = 854 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query663
3aih_A124 Protein OS-9; beta barrel, lectin, sugar binding p 99.94
2fcw_B80 LDL receptor, low-density lipoprotein receptor; pr 99.67
2fyj_A82 Low-density lipoprotein receptor-related protein 1 99.67
2rl8_A154 Cation-dependent mannose-6-phosphate receptor; P-t 99.58
2kva_A148 Cation-independent mannose-6-phosphate receptor; t 99.33
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 99.22
1gp0_A143 Cation-independent mannose-6-phosphate receptor; i 99.18
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 99.17
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 99.14
2xrc_A565 Human complement factor I; immune system, hydrolas 99.09
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 99.02
1jrf_A47 TVA LDL-A module, subgroup A ROUS sarcoma virus re 98.76
2kny_A80 LRP-1, linker, APO-E; lipoprotein receptor, ligand 98.75
2kny_A80 LRP-1, linker, APO-E; lipoprotein receptor, ligand 98.57
1j8e_A44 Low-density lipoprotein receptor-related protein 1 98.56
2lla_A140 Mannose-6-phosphate/insulin-like growth factor II; 98.54
1ajj_A37 LR5, low-density lipoprotein receptor; LDL recepto 98.54
1cr8_A42 Protein (LOW density lipoprotein receptor related 98.51
1cr8_A42 Protein (LOW density lipoprotein receptor related 98.5
2jm4_A43 Relaxin receptor 1; LDL-A module, RXFP1 receptor, 98.5
2i1p_A48 Low-density lipoprotein receptor-related protein 2 98.5
3dpr_E39 LDL-receptor class A 3; human rhinovirus, VLDL-rec 98.49
3dpr_E39 LDL-receptor class A 3; human rhinovirus, VLDL-rec 98.48
2knx_A50 Prolow-density lipoprotein receptor-related prote; 98.47
3a7q_B44 Low-density lipoprotein receptor-related protein; 98.44
2jm4_A43 Relaxin receptor 1; LDL-A module, RXFP1 receptor, 98.44
1d2l_A45 Lipoprotein receptor related protein; ligand bindi 98.44
2knx_A50 Prolow-density lipoprotein receptor-related prote; 98.42
1d2l_A45 Lipoprotein receptor related protein; ligand bindi 98.42
1jrf_A47 TVA LDL-A module, subgroup A ROUS sarcoma virus re 98.42
1k7b_A47 Subgroup A ROUS sarcoma virus receptor PG800 and P 98.41
2m0p_A52 Low-density lipoprotein receptor-related protein; 98.4
2gtl_O215 Extracellular hemoglobin linker L3 subunit; anneli 98.39
2m0p_A52 Low-density lipoprotein receptor-related protein; 98.37
2l21_A154 Cation-independent mannose-6-phosphate receptor; g 98.36
1ajj_A37 LR5, low-density lipoprotein receptor; LDL recepto 98.36
3a7q_B44 Low-density lipoprotein receptor-related protein; 98.31
1k7b_A47 Subgroup A ROUS sarcoma virus receptor PG800 and P 98.28
2i1p_A48 Low-density lipoprotein receptor-related protein 2 98.27
2l2g_A151 IGF2R domain 11; insulin-like growth factor 2, man 98.27
1j8e_A44 Low-density lipoprotein receptor-related protein 1 98.22
2fyj_A82 Low-density lipoprotein receptor-related protein 1 98.07
2gtl_O215 Extracellular hemoglobin linker L3 subunit; anneli 98.06
1q25_A432 CI, cation-independent mannose 6-phosphate recepto 98.04
2gtl_M217 Hemoglobin linker chain L1; annelid erythrocruorin 97.94
2fcw_B80 LDL receptor, low-density lipoprotein receptor; pr 97.93
2gtl_N220 Extracellular hemoglobin linker L2 subunit; anneli 97.84
2gtl_M217 Hemoglobin linker chain L1; annelid erythrocruorin 97.74
2xrc_A565 Human complement factor I; immune system, hydrolas 97.58
2gtl_N220 Extracellular hemoglobin linker L2 subunit; anneli 97.55
2v5o_A 627 Cation-independent mannose-6-phosphate receptor; m 97.55
3ojy_A554 Complement component C8 alpha chain; macpf, lipoca 97.39
1q25_A 432 CI, cation-independent mannose 6-phosphate recepto 97.27
3ojy_B537 Complement component C8 beta chain; macpf, lipocal 97.25
2v5o_A627 Cation-independent mannose-6-phosphate receptor; m 97.14
3ojy_B537 Complement component C8 beta chain; macpf, lipocal 96.82
3ojy_A554 Complement component C8 alpha chain; macpf, lipoca 96.63
3t5o_A 913 Complement component C6; macpf, MAC, membrane atta 94.28
3t5o_A 913 Complement component C6; macpf, MAC, membrane atta 93.07
>3aih_A Protein OS-9; beta barrel, lectin, sugar binding protein; HET: BMA MAN; 2.10A {Homo sapiens} Back     alignment and structure
Probab=99.94  E-value=1.8e-27  Score=219.47  Aligned_cols=96  Identities=29%  Similarity=0.618  Sum_probs=87.4

Q ss_pred             ccceEEeecCeEEEEeecCCceeecc------CCCceeeccccc---cC------------CCeeEEEecCCccC-CCCC
Q 006056          543 YGHCFESKQNKYVYKVCPYKKATQEE------GHSTTRLGSWDK---FE------------DSYHIMLFSNGDKC-WNGP  600 (663)
Q Consensus       543 ~~~C~~~~~g~YtYelC~~~~v~Q~~------g~~~~~LG~~~~---~~------------~~y~~m~y~~G~~C-wNGp  600 (663)
                      .+.|+++..|||+|+|||+++|+|+|      ++..++||+|.+   |.            ..|++|.|.||+.| ||||
T Consensus         2 ~~~C~~~~~g~wtYe~C~~k~v~Q~h~~~~~~~~~~~~LG~~~~~~~~~~~~~~~~~~~~~~~y~~~~y~~G~~Cd~~g~   81 (124)
T 3aih_A            2 SAPCLLKTKDWWTYEFCYGRHIQQYHMEDSEIKGEVLYLGYYQSAFDWDDETAKASKQHRLKRYHSQTYGNGSKCDLNGR   81 (124)
T ss_dssp             --CCEEEEETTEEEEEETTTEEEEECEETTEECSCCEEEEEEEEEEEEEC-----------CEEEEEEEECCSBCTTTSC
T ss_pred             CCcceEcCCCEEEEEECCCCeEEEecccCCCCCCCEEECccccccccccccccccccccccceeEEEEcCCCCccCCCCC
Confidence            36899999999999999999999998      345678999998   85            25899999999999 9999


Q ss_pred             CceeEEEEEeCC-----CCceeeecCCCccEEEEEEecccCCC
Q 006056          601 DRSMKVRLRCGL-----KNEVTDVDEPSRCEYVALLYTPAVCS  638 (663)
Q Consensus       601 ~Rst~V~l~Cg~-----~~~i~sV~Ep~kC~Y~~~~~TPa~C~  638 (663)
                      +|+|+|+|.|++     .+.|++|.||++|+|.|+|.||++|.
T Consensus        82 ~Rst~V~~~C~~~~~~~~~~i~~v~E~~~C~Y~~~v~tP~~C~  124 (124)
T 3aih_A           82 PREAEVRFLCDEGAGISGDYIDRVDEPLSCSYVLTIRTPRLCP  124 (124)
T ss_dssp             BCEEEEEEEECTTCCSSCCEEEEEEEEETTEEEEEEEEGGGCC
T ss_pred             CcEEEEEEEeCCCCCCCccEEEEEcCCCceEEEEEEEecccCC
Confidence            999999999998     68999999999999999999999994
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Back     alignment and structure
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Back     alignment and structure
>2rl8_A Cation-dependent mannose-6-phosphate receptor; P-type lectin, lectin, glycop lysosome, membrane, transmembrane, transport; HET: NAG M6D; 1.45A {Bos taurus} SCOP: b.64.1.1 PDB: 1keo_A* 2rl7_A* 2rl6_A* 2rl9_A* 2rlb_A* 3cy4_A* 3k41_A* 3k43_A* 3k42_A* 1m6p_A* 1c39_A* Back     alignment and structure
>2kva_A Cation-independent mannose-6-phosphate receptor; transport, lysosome, sugar binding, glyco membrane, phosphoprotein, transmembrane, disulfide bond; NMR {Bos taurus} PDB: 2kvb_A Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>1gp0_A Cation-independent mannose-6-phosphate receptor; insulin-like growth factor, transport, beta barrel; 1.4A {Homo sapiens} SCOP: b.64.1.1 PDB: 1e6f_A 1gp3_A 1gqb_A 2cnj_D 2l29_A 2l2a_A Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Back     alignment and structure
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Back     alignment and structure
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Back     alignment and structure
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Back     alignment and structure
>2lla_A Mannose-6-phosphate/insulin-like growth factor II; monotreme, IGF-II, domain 11, transport; NMR {Tachyglossus aculeatus} Back     alignment and structure
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Back     alignment and structure
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Back     alignment and structure
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Back     alignment and structure
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Back     alignment and structure
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Back     alignment and structure
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Back     alignment and structure
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Back     alignment and structure
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Back     alignment and structure
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Back     alignment and structure
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Back     alignment and structure
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Back     alignment and structure
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Back     alignment and structure
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens} Back     alignment and structure
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Back     alignment and structure
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens} Back     alignment and structure
>2l21_A Cation-independent mannose-6-phosphate receptor; genomic imprinting, insulin-like growth factor 2, mannose 6 receptor, protein evolution; NMR {Gallus gallus} Back     alignment and structure
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Back     alignment and structure
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Back     alignment and structure
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Back     alignment and structure
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Back     alignment and structure
>2l2g_A IGF2R domain 11; insulin-like growth factor 2, mannose 6 phosphate receptor, imprinting, protein evolution, signaling protein; NMR {Monodelphis domestica} Back     alignment and structure
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Back     alignment and structure
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Back     alignment and structure
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Back     alignment and structure
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P receptor, CI-MPR; P-lectin, protein transport,S binding protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP: b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A* Back     alignment and structure
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Back     alignment and structure
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Back     alignment and structure
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Back     alignment and structure
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Back     alignment and structure
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Back     alignment and structure
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Back     alignment and structure
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane, lysosome, transport, beta barrel, phosphorylation, fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A* 2v5n_A* Back     alignment and structure
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Back     alignment and structure
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P receptor, CI-MPR; P-lectin, protein transport,S binding protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP: b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A* Back     alignment and structure
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Back     alignment and structure
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane, lysosome, transport, beta barrel, phosphorylation, fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A* 2v5n_A* Back     alignment and structure
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Back     alignment and structure
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Back     alignment and structure
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Back     alignment and structure
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 663
d2rl8a1151 b.64.1.1 (A:4-154) Cation-dependent mannose 6-phos 5e-08
d1q25a3152 b.64.1.1 (A:281-432) Cation-independent mannose-6- 1e-07
d1j8ea_44 g.12.1.1 (A:) Ligand-binding domain of low-density 9e-07
d1q25a1123 b.64.1.1 (A:7-129) Cation-independent mannose-6-ph 7e-06
d1gp0a_133 b.64.1.1 (A:) Cation-independent mannose-6-phospha 2e-05
d2gtln241 g.12.1.1 (N:61-101) Extracellular hemoglobin linke 7e-05
d1cr8a_42 g.12.1.1 (A:) Ligand-binding domain of low-density 2e-04
d2gtlm242 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co 3e-04
d1d2la_45 g.12.1.1 (A:) Ligand-binding domain of low-density 4e-04
d1k7ba_42 g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai 4e-04
d1f5ya241 g.12.1.1 (A:45-85) Ligand-binding domain of low-de 8e-04
d1f8za_39 g.12.1.1 (A:) Ligand-binding domain of low-density 8e-04
d1v9u5_39 g.12.1.1 (5:) Very low-density lipoprotein recepto 9e-04
d2fcwb139 g.12.1.1 (B:86-124) Ligand-binding domain of low-d 0.001
d2gtlo241 g.12.1.1 (O:60-100) Extracellular hemoglobin linke 0.001
d2fcwb239 g.12.1.1 (B:125-163) Ligand-binding domain of low- 0.002
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 0.002
d1ajja_37 g.12.1.1 (A:) Ligand-binding domain of low-density 0.002
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 0.003
d1f5ya144 g.12.1.1 (A:1-44) Ligand-binding domain of low-den 0.004
>d2rl8a1 b.64.1.1 (A:4-154) Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain {Cow (Bos taurus) [TaxId: 9913]} Length = 151 Back     information, alignment and structure

class: All beta proteins
fold: Mannose 6-phosphate receptor domain
superfamily: Mannose 6-phosphate receptor domain
family: Mannose 6-phosphate receptor domain
domain: Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.5 bits (120), Expect = 5e-08
 Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 29/146 (19%)

Query: 522 ISSLTQKLKHEFGPEKEFYSFYGHCFESK----QNKYVYKVCPYKKATQEE--------- 568
           +    ++ + E    K     +   FES      + Y Y     ++A Q           
Sbjct: 6   VGEKGKESEKELALLKRLTPLFQKSFESTVGQSPDMYSYVFRVCREAGQHSSGAGLVQIQ 65

Query: 569 --GHSTTRLGSWDK----FEDSYHIMLFSNGDKCWN---GPDRSMKVRLRC-------GL 612
                 T +G +++       ++ ++++  GD+  N      R   V + C         
Sbjct: 66  KSNGKETVVGRFNETQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMISCNRHTLADNF 125

Query: 613 KNEVTDVDEPSRCEYVALLYTPAVCS 638
                +  +   C Y+  + +   CS
Sbjct: 126 NPVSEERGKVQDCFYLFEMDSSLACS 151
>d1q25a3 b.64.1.1 (A:281-432) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]} Length = 152 Back     information, alignment and structure
>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 Back     information, alignment and structure
>d1q25a1 b.64.1.1 (A:7-129) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]} Length = 123 Back     information, alignment and structure
>d1gp0a_ b.64.1.1 (A:) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 133 Back     information, alignment and structure
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 Back     information, alignment and structure
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42 Back     information, alignment and structure
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42 Back     information, alignment and structure
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45 Back     information, alignment and structure
>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42 Back     information, alignment and structure
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure
>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 Back     information, alignment and structure
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 Back     information, alignment and structure
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 Back     information, alignment and structure
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 Back     information, alignment and structure
>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37 Back     information, alignment and structure
>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query663
d2rl8a1151 Cation-dependent mannose 6-phosphate receptor, ext 98.88
d1q25a3152 Cation-independent mannose-6-phosphate receptor (M 98.72
d1j8ea_44 Ligand-binding domain of low-density lipoprotein r 98.66
d1gp0a_133 Cation-independent mannose-6-phosphate receptor (M 98.65
d1v9u5_39 Very low-density lipoprotein receptor {Human (Homo 98.61
d1ajja_37 Ligand-binding domain of low-density lipoprotein r 98.59
d1f8za_39 Ligand-binding domain of low-density lipoprotein r 98.56
d2fcwb139 Ligand-binding domain of low-density lipoprotein r 98.54
d1f5ya241 Ligand-binding domain of low-density lipoprotein r 98.52
d1cr8a_42 Ligand-binding domain of low-density lipoprotein r 98.52
d1f8za_39 Ligand-binding domain of low-density lipoprotein r 98.52
d1d2la_45 Ligand-binding domain of low-density lipoprotein r 98.48
d1xfea244 Ligand-binding domain of low-density lipoprotein r 98.46
d1v9u5_39 Very low-density lipoprotein receptor {Human (Homo 98.45
d2fcwb239 Ligand-binding domain of low-density lipoprotein r 98.42
d1f5ya144 Ligand-binding domain of low-density lipoprotein r 98.41
d2fcwb239 Ligand-binding domain of low-density lipoprotein r 98.41
d2gtlm242 Hemoglobin linker chain l1 {Common earthworm (Lumb 98.41
d1k7ba_42 soluble Tva ectodomain, sTva47 {Quail (Coturnix co 98.41
d2fcwb139 Ligand-binding domain of low-density lipoprotein r 98.41
d1ajja_37 Ligand-binding domain of low-density lipoprotein r 98.41
d2gtlm242 Hemoglobin linker chain l1 {Common earthworm (Lumb 98.4
d1cr8a_42 Ligand-binding domain of low-density lipoprotein r 98.39
d1f5ya144 Ligand-binding domain of low-density lipoprotein r 98.38
d1d2la_45 Ligand-binding domain of low-density lipoprotein r 98.37
d2gtlo241 Extracellular hemoglobin linker l3 subunit {Common 98.37
d2gtln241 Extracellular hemoglobin linker l2 subunit {Common 98.36
d1f5ya241 Ligand-binding domain of low-density lipoprotein r 98.36
d1k7ba_42 soluble Tva ectodomain, sTva47 {Quail (Coturnix co 98.36
d2gtln241 Extracellular hemoglobin linker l2 subunit {Common 98.34
d1j8ea_44 Ligand-binding domain of low-density lipoprotein r 98.31
d1xfea244 Ligand-binding domain of low-density lipoprotein r 98.29
d1q25a2151 Cation-independent mannose-6-phosphate receptor (M 98.25
d2gtlo241 Extracellular hemoglobin linker l3 subunit {Common 98.23
d1q25a1123 Cation-independent mannose-6-phosphate receptor (M 98.14
>d2rl8a1 b.64.1.1 (A:4-154) Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All beta proteins
fold: Mannose 6-phosphate receptor domain
superfamily: Mannose 6-phosphate receptor domain
family: Mannose 6-phosphate receptor domain
domain: Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.88  E-value=1.7e-09  Score=100.13  Aligned_cols=107  Identities=20%  Similarity=0.361  Sum_probs=80.2

Q ss_pred             cCCchhhhhhhccceEEeecC----eEEEEeecCCcee---------ecc--CCCceeecccccc----CCCeeEEEecC
Q 006056          532 EFGPEKEFYSFYGHCFESKQN----KYVYKVCPYKKAT---------QEE--GHSTTRLGSWDKF----EDSYHIMLFSN  592 (663)
Q Consensus       532 d~G~~~~~~~L~~~C~~~~~g----~YtYelC~~~~v~---------Q~~--g~~~~~LG~~~~~----~~~y~~m~y~~  592 (663)
                      ++|---.|.||.++++....+    .|+|.|..-+.+.         |..  ++..++||.+...    .+..+.|.|.+
T Consensus        16 ~~~~~~~LspL~n~~~~~~v~~~~~~y~y~inVC~~~~~~~~~a~~Cq~~~~~~~~~~lG~~~~~~~~~~~~~l~L~Y~~   95 (151)
T d2rl8a1          16 ELALLKRLTPLFQKSFESTVGQSPDMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVGRFNETQIFQGSNWIMLIYKG   95 (151)
T ss_dssp             HHHHHHHTGGGTTCCEECCCC---CCEEEEECSSSCCSSSSSCEEEEEEETTTCCEEEEEEEEEEEEEECSSEEEEEEEE
T ss_pred             hhhhhhhcCccccCCcceEECcCCccEEEEEEeCCCCCCCCCCceEEEEecCCCeEEEeeeeccccEEccCCeEEEEECC
Confidence            345556789999999998643    3777665433333         433  5567799998864    45678999999


Q ss_pred             CccCCC---CCCceeEEEEEeCCCCc-----e--eeecCCCccEEEEEEecccCCC
Q 006056          593 GDKCWN---GPDRSMKVRLRCGLKNE-----V--TDVDEPSRCEYVALLYTPAVCS  638 (663)
Q Consensus       593 G~~CwN---Gp~Rst~V~l~Cg~~~~-----i--~sV~Ep~kC~Y~~~~~TPa~C~  638 (663)
                      |+.|++   |..|+|.|.|.|.+...     +  ..+.+...|.|.|++.||+||.
T Consensus        96 G~~C~~~~~~~~rst~I~F~Cd~~~~~~~~~~~~e~~~~~~~C~Y~F~w~T~~ACs  151 (151)
T d2rl8a1          96 GDEYDNHCGREQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS  151 (151)
T ss_dssp             CCBCSSSGGGCBCCEEEEEEECTTCSSEEEEEEEEECCSSSCCEEEEEEEEGGGCC
T ss_pred             CCccCCCCCCceeEEEEEEEeCCCCcCCCceeeeecccCCCceEEEEEEeehhccC
Confidence            999986   67899999999987431     2  2356788999999999999995
>d1q25a3 b.64.1.1 (A:281-432) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gp0a_ b.64.1.1 (A:) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Back     information, alignment and structure
>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Back     information, alignment and structure
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Back     information, alignment and structure
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Back     information, alignment and structure
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Back     information, alignment and structure
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Back     information, alignment and structure
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Back     information, alignment and structure
>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q25a2 b.64.1.1 (A:130-280) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Back     information, alignment and structure
>d1q25a1 b.64.1.1 (A:7-129) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure