Citrus Sinensis ID: 006073

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660--
MKLYIAKVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRGHGESGRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRGLPRACKKV
ccHHHHHHHHEEcccEEEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccccccEEEEEEEEEEEccccccccEEEEEEccccccHHHHHHHHHccccccccccccccccccccccEEEEEcccEEEEEEEEccccEEEEEEEEcccccccEEEEEEEEEcccEEEEEEEEHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccEEEEEEEccccccccccccccccccccccccccHHHccccccccccccccccccccccHHHHHHHcccccEEEEEccEEEEEHHHHHccccccEEcccccccEEEEEEEEEEcccccccccEEEEEEccEEcEEEEEccccccccccccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cEEEEEEEEEEEEccEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccEEEEcHHHHcccccccccHHHHHHHHHHHcccccccccEEEEEEEEEEcccccccEEEEEEEccccccHHHHHHHHHccccccccccccEEEEEccccccccccccccEEEEEcccccEEEEEEEHHHccccccEEEEEcccccccccEEccEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccEEEEEEEccHccccccEEEccccccccccccHHHEccccccccccccHcccccccccHHHHHHHHHcccccEEEEEccEEEcHHHHHHHcccccccccccccEEEEEEEEEEccccccccEEEEEEcccEEEEEEcccccccccccccEEEEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEcHHHccHccccccccHHHccccEEEccccccccccccccccccccEEEccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHcccccccccc
MKLYIAKVAIAKFKfwefyilppdqtsnfTNIRVAYKMEktrnasngrghgesgrscqvvrptatkanindsptlpvniVKETVSRGNACIQARvsdtsednfspvlkfspvvgdrlssestietcsrpepravkqagpleknfvradpsYLQTLGQAHSGWIFGAIAELvdnsrdakaTKLEISIESIYFkkagkdipmlsiiddghgmthqdVVRMtyfghkqpdaddpnrigrfgvgfktgamrLGKDALVLTQTADSRSIAFLSQSLnqgkdnleipivsyyrkgqfmeldTVVQSEATAKYNLksikefspfnkyligekaglfqdkctgtQIYIWNldqwgsnyclewdnglnggssfhqgdilirsrrirsrpgqisqkvpldyslrSYLEVIFLVPRMKIYVQGslvrsrplaksLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVggmihngdtgrgvigvidvsdlmdegnGLVWVHnnkqgfldcepYARLEEWLGKVADeywdnkfdslnvvkdgalykpdqewvqcnkcrkwrmldpgfdtkslpvewfcymkpfeglcdlpeqkvdaGVVTVSakrtgydsrenslpfegiatikvedmssdsiglsrmaedssplkrirrglprackkv
MKLYIAKVAIAKfkfwefyilppdqtsnFTNIRVAYKMEKtrnasngrghgesgrscQVVRPTatkanindsptlpvNIVKETVSRGNACIQArvsdtsednfspvlkfspvvgdrlssestietcsrpepravkqagplEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISiesiyfkkagkdIPMLSIIDDGHGMTHQDVVRMTYFGhkqpdaddpnriGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLsqslnqgkdnlEIPIVSYYRKGQFMELDTVVQSEATAKYnlksikefspFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRsrrirsrpgqisqkvpldyslRSYLEVIFLVPRMKIYVQGslvrsrplaksLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVkdgalykpdqewvqCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVsakrtgydsrenslpfegiatikvedmssdsiglsrmaedssplkrirrglprackkv
MKLYIAKVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRGHGESGRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILirsrrirsrPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRGLPRACKKV
**LYIAKVAIAKFKFWEFYILPPDQTSNFTNIRVAYK*************************************LPVNIVKETVSRGNACIQA**************************************************FVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHK*******NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRS**GQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKR*************GIA**************************************
**LYIAKVAIAKFKFWEFYILPPDQTSNFTNIR***************************************************************************************************************VRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY*****************GVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCD***********************************************************************
MKLYIAKVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTR***************QVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVG*************RPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRG********
MKLYIAKVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKT*********************************LPVNIVKETVSRGNACI**********************************C*RPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIR*RPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAK********NSLPFEGIATIKVEDM*******************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKLYIAKVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRGHGESGRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRGLPRACKKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query662 2.2.26 [Sep-21-2011]
Q14149 939 MORC family CW-type zinc yes no 0.605 0.427 0.317 5e-48
Q8BMD7 928 MORC family CW-type zinc no no 0.664 0.474 0.310 3e-45
Q8TE76 937 MORC family CW-type zinc no no 0.638 0.451 0.307 1e-41
Q8C5W4 1022 MORC family CW-type zinc no no 0.374 0.242 0.292 2e-23
Q9Y6X9 1032 MORC family CW-type zinc no no 0.377 0.242 0.297 2e-23
Q69ZX6 1030 MORC family CW-type zinc no no 0.377 0.242 0.294 7e-23
Q9WVL5 950 MORC family CW-type zinc no no 0.394 0.274 0.275 2e-22
Q86VD1 984 MORC family CW-type zinc no no 0.620 0.417 0.223 2e-19
>sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3 Back     alignment and function desciption
 Score =  192 bits (489), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 146/460 (31%), Positives = 232/460 (50%), Gaps = 59/460 (12%)

Query: 149 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGH 208
           P +L T   +H+ W F A+AEL+DN+ D      +I I+    K    D   L+  D+G+
Sbjct: 16  PKFLHTNSTSHT-WPFSAVAELIDNAYDPDVNAKQIWID----KTVINDHICLTFTDNGN 70

Query: 209 GMTHQDVVRMTYFGHKQPDADDPN-RIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFL 267
           GMT   + +M  FG       + +  +G +G GFK+G+MRLGKDA+V T+  +S S+  L
Sbjct: 71  GMTSDKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAIVFTKNGESMSVGLL 130

Query: 268 SQSLNQ--GKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFN--KYLIG 323
           SQ+  +    +++ +PIV++ +  Q + L       A +K +L +I E S F+  + L+ 
Sbjct: 131 SQTYLEVIKAEHVVVPIVAFNKHRQMINL-------AESKASLAAILEHSLFSTEQKLLA 183

Query: 324 EKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDI-LIRSRRIRSRPGQ 382
           E   +   K  GT+I IWNL  + +    E+D   +        D+  I  ++   +  +
Sbjct: 184 ELDAIIGKK--GTRIIIWNLRSYKN--ATEFDFEKDKYDIRIPEDLDEITGKKGYKKQER 239

Query: 383 ISQKVP-LDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGI----IMGK 437
           + Q  P  DYSLR+Y  +++L PRM+I ++G  V+++ ++KSL    +E  +     + K
Sbjct: 240 MDQIAPESDYSLRAYCSILYLKPRMQIILRGQKVKTQLVSKSL--AYIERDVYRPKFLSK 297

Query: 438 SAHLTLGRCQLEWEQMNC------GIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDV 491
           +  +T G         NC      GI +Y   RLI+AY++VG  +   + G GV+G+I  
Sbjct: 298 TVRITFG--------FNCRNKDHYGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGII-- 347

Query: 492 SDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWD------NKFDSLNVVKDG 545
                E N L   H NKQ F     Y      LG+  ++YW+      N    LN+  + 
Sbjct: 348 -----ECNFLKPTH-NKQDFDYTNEYRLTITALGEKLNDYWNEMKVKKNTEYPLNLPVED 401

Query: 546 ALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP 585
              +PDQ WVQC+ C KWR L  G D   LP +W+C   P
Sbjct: 402 IQKRPDQTWVQCDACLKWRKLPDGMD--QLPEKWYCSNNP 439

Homo sapiens (taxid: 9606)
>sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2 Back     alignment and function description
>sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2 Back     alignment and function description
>sp|Q8C5W4|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2 Back     alignment and function description
>sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2 Back     alignment and function description
>sp|Q69ZX6|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2 Back     alignment and function description
>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1 Back     alignment and function description
>sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query662
359476999760 PREDICTED: MORC family CW-type zinc fing 0.984 0.857 0.635 0.0
255583448754 zinc finger protein, putative [Ricinus c 0.969 0.851 0.675 0.0
296088514596 unnamed protein product [Vitis vinifera] 0.850 0.944 0.697 0.0
356495297692 PREDICTED: MORC family CW-type zinc fing 0.877 0.839 0.622 0.0
357484261577 MORC family CW-type zinc finger protein 0.836 0.960 0.634 0.0
222635901 800 hypothetical protein OsJ_22008 [Oryza sa 0.942 0.78 0.527 0.0
115468994 792 Os06g0622000 [Oryza sativa Japonica Grou 0.942 0.787 0.527 0.0
218198566 766 hypothetical protein OsI_23737 [Oryza sa 0.891 0.770 0.486 1e-174
413954785 785 hypothetical protein ZEAMMB73_569962 [Ze 0.885 0.746 0.507 1e-173
242096394758 hypothetical protein SORBIDRAFT_10g02439 0.897 0.783 0.480 1e-170
>gi|359476999|ref|XP_002263942.2| PREDICTED: MORC family CW-type zinc finger protein 2B-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/689 (63%), Positives = 512/689 (74%), Gaps = 37/689 (5%)

Query: 8   VAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGR------------------- 48
           VA+AKF+ +E YILPP + SNF++  VAY++ K     + +                   
Sbjct: 73  VAVAKFQLYELYILPPTEGSNFSHAVVAYRLVKVHKVDDSKTNGISDETMIQPVQLLSPE 132

Query: 49  --GHGESGRSCQVVRPTATKANINDSPTLPVN--------IVKETVSRGNACIQARVSDT 98
              H    R C     T+T A IN  P  P            KE   R +A    R S  
Sbjct: 133 ASSHTNQTRRCMQPSTTSTNACINSRPVSPFGETVVPSCFTAKEFADRSDAYKTGRCSAN 192

Query: 99  SEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQA 158
           S D   P  KF+   GD  + +   +  +R +  AVKQ G  EKN+VRADPSYL+TLGQA
Sbjct: 193 SVDR-CPHNKFTQDTGDYNTLDFETQAYTRSQLNAVKQDGHSEKNYVRADPSYLKTLGQA 251

Query: 159 HSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM 218
           HSGWIFGAIAELVDNSRDAKATKL ISIE IY KKAG+DIPMLS+ DDG GMTH+++VRM
Sbjct: 252 HSGWIFGAIAELVDNSRDAKATKLGISIEMIYSKKAGEDIPMLSVKDDGQGMTHKEIVRM 311

Query: 219 TYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL 278
             FGHKQPD DDP+ IGRFG+GFKTGAMRLG+DA VLTQT+ SRSIAFLSQSLN+GKDNL
Sbjct: 312 VSFGHKQPDTDDPDHIGRFGIGFKTGAMRLGRDAFVLTQTSSSRSIAFLSQSLNEGKDNL 371

Query: 279 EIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQI 338
           EIPIVSYYR+GQFMELD  +QSEA AKYNLK+I+EFSPFNKY IG KAGLF +K TGTQI
Sbjct: 372 EIPIVSYYRQGQFMELDESIQSEAFAKYNLKAIREFSPFNKYSIGMKAGLFCEKGTGTQI 431

Query: 339 YIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLE 398
           YIWNLD+WGS+YCLEW NG++ GSSF+QGDI IRSRR++SRPGQISQKVPLDYSLRSYLE
Sbjct: 432 YIWNLDKWGSDYCLEWHNGMSSGSSFYQGDIFIRSRRVKSRPGQISQKVPLDYSLRSYLE 491

Query: 399 VIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIF 458
           VIFL PRMKI++QGSLV+SRPLAKSLN T +E GI+MGK   LTLGRCQLEWEQ NCGIF
Sbjct: 492 VIFLNPRMKIFIQGSLVKSRPLAKSLNNTVIENGIVMGKPVQLTLGRCQLEWEQANCGIF 551

Query: 459 LYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYA 518
           LYWHGRLIE YKRVGGMIHN D GRGVIGVIDV+D+M++GNG VWVH+NKQGF DCEPYA
Sbjct: 552 LYWHGRLIEGYKRVGGMIHNADMGRGVIGVIDVTDIMNDGNGHVWVHSNKQGFQDCEPYA 611

Query: 519 RLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVE 578
           RLEEWLG  ADE+WD  FD+L + K   LYKPD EWVQC+KCRKWR+L  GF    LP E
Sbjct: 612 RLEEWLGSKADEFWDTNFDTLQLKKGNNLYKPDHEWVQCDKCRKWRVLSSGFRANDLPQE 671

Query: 579 WFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGI----ATIKVEDMSSD 634
           WFCYM+PF GLC++PEQKV  GV+TVSAKR+G D  +  +  + +    +T  +E +S D
Sbjct: 672 WFCYMEPFNGLCEIPEQKVARGVITVSAKRSGCDPSQKPVQCDNVQILHSTSSLESISGD 731

Query: 635 SIGLSRMAED-SSPLKRIRRGLPRACKKV 662
               S+  ED ++ LKR+RRG  R+CKKV
Sbjct: 732 DS--SQTPEDVTTVLKRLRRGPSRSCKKV 758

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255583448|ref|XP_002532483.1| zinc finger protein, putative [Ricinus communis] gi|223527808|gb|EEF29907.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296088514|emb|CBI37505.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356495297|ref|XP_003516515.1| PREDICTED: MORC family CW-type zinc finger protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357484261|ref|XP_003612418.1| MORC family CW-type zinc finger protein [Medicago truncatula] gi|355513753|gb|AES95376.1| MORC family CW-type zinc finger protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|222635901|gb|EEE66033.1| hypothetical protein OsJ_22008 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115468994|ref|NP_001058096.1| Os06g0622000 [Oryza sativa Japonica Group] gi|51090841|dbj|BAD35369.1| Zinc finger CW-type coiled-coil domain protein 3-like [Oryza sativa Japonica Group] gi|113596136|dbj|BAF20010.1| Os06g0622000 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218198566|gb|EEC80993.1| hypothetical protein OsI_23737 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|413954785|gb|AFW87434.1| hypothetical protein ZEAMMB73_569962 [Zea mays] Back     alignment and taxonomy information
>gi|242096394|ref|XP_002438687.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] gi|241916910|gb|EER90054.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query662
UNIPROTKB|F1MFY1 960 MORC3 "Uncharacterized protein 0.661 0.456 0.326 4.7e-50
ZFIN|ZDB-GENE-030131-1502 1079 morc3a "MORC family CW-type zi 0.735 0.451 0.301 7e-50
UNIPROTKB|F1PFJ7 939 MORC3 "Uncharacterized protein 0.655 0.462 0.323 1.1e-48
UNIPROTKB|F1SGX2 940 MORC3 "Uncharacterized protein 0.658 0.463 0.315 1e-47
UNIPROTKB|Q14149 939 MORC3 "MORC family CW-type zin 0.649 0.457 0.313 7.7e-47
UNIPROTKB|F1P2D9 926 MORC3 "Uncharacterized protein 0.726 0.519 0.293 5e-45
ZFIN|ZDB-GENE-040801-98 763 morc3b "MORC family CW-type zi 0.638 0.554 0.323 3.4e-42
UNIPROTKB|Q8TE76 937 MORC4 "MORC family CW-type zin 0.661 0.467 0.301 3.4e-39
UNIPROTKB|F1P705 898 MORC4 "Uncharacterized protein 0.641 0.473 0.298 1.2e-38
MGI|MGI:1922996 928 Morc4 "microrchidia 4" [Mus mu 0.617 0.440 0.304 3.7e-35
UNIPROTKB|F1MFY1 MORC3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 529 (191.3 bits), Expect = 4.7e-50, P = 4.7e-50
 Identities = 159/487 (32%), Positives = 248/487 (50%)

Query:   149 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGH 208
             P +L T   +H+ W F A+AEL+DN+ D      +I I+    K    D   L+  D+G+
Sbjct:    26 PKFLHTNSTSHT-WPFSAVAELIDNAYDPDVNAKQIWID----KTVINDCICLTFTDNGN 80

Query:   209 GMTHQDVVRMTYFGHKQP-DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFL 267
             GMT   + +M  FG  +    +D   +G +G GFK+G+MRLGKDA+V T+  +S S+ FL
Sbjct:    81 GMTSDKLHKMLSFGFSEKVTMNDHVPVGLYGNGFKSGSMRLGKDAMVFTKNEESMSVGFL 140

Query:   268 SQS-LNQGK-DNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNK--YLIG 323
             SQ+ L   K +++ +PIVS+ ++     LD+  +S+A+    L +I E S F+K   L+ 
Sbjct:   141 SQTYLEVIKAEHVVVPIVSFNKQDIRQVLDST-ESKAS----LAAILEHSLFSKEQQLLA 195

Query:   324 EKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILXXXXXXXXXPGQ- 382
             E   +   K  GT+I IWNL  + S    E+D   +        D+            + 
Sbjct:   196 ELDAIIGKK--GTRIIIWNLRSYKS--ATEFDFDKDKYDIRIPEDLDETAGKKGYKKQER 251

Query:   383 ISQKVP-LDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSL---NKTCVETGIIMGKS 438
             + Q  P  DYSLR+Y  +++L PRM+I ++G  V+++ ++KSL    +       +  K+
Sbjct:   252 MDQIAPESDYSLRAYCSILYLKPRMQIILRGQKVKTQLVSKSLAYIERDIYRPKFLTNKT 311

Query:   439 AHLTLG-RCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDE 497
               +T G  C+    + + GI +Y   RLI+AY++VG  +   + G GV+G+ID   L   
Sbjct:   312 VRITFGFNCR---NKDHYGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGIIDCYFLKP- 367

Query:   498 GNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDN-KFDS-----LNVVKDGALYKPD 551
                    HN KQ F     Y      LG   ++YW+  K        LN+  +    +PD
Sbjct:   368 ------THN-KQDFDYTNEYRLTITALGDKLNDYWNEMKVKKHAEYPLNLPVEDIQKRPD 420

Query:   552 QEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAGVVTVSAKR 608
             Q WVQC+ C KWR L  G D   LP +W+C   P   F   CD+PE+  D  VV  + ++
Sbjct:   421 QTWVQCDSCLKWRKLPDGID--QLPEKWYCSNNPDPQFRN-CDVPEEPEDEDVVHPTYEK 477

Query:   609 TGYDSRE 615
             T Y  ++
Sbjct:   478 T-YKKKD 483
GO:0051457 "maintenance of protein location in nucleus" evidence=IEA
GO:0050821 "protein stabilization" evidence=IEA
GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA
GO:0045111 "intermediate filament cytoskeleton" evidence=IEA
GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA
GO:0016605 "PML body" evidence=IEA
GO:0016235 "aggresome" evidence=IEA
GO:0009791 "post-embryonic development" evidence=IEA
GO:0007569 "cell aging" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
ZFIN|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PFJ7 MORC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGX2 MORC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q14149 MORC3 "MORC family CW-type zinc finger protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2D9 MORC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-98 morc3b "MORC family CW-type zinc finger 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TE76 MORC4 "MORC family CW-type zinc finger protein 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P705 MORC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1922996 Morc4 "microrchidia 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query662
pfam13589134 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr 5e-22
pfam0749650 pfam07496, zf-CW, CW-type Zinc Finger 1e-11
COG0323 638 COG0323, MutL, DNA mismatch repair enzyme (predict 6e-07
TIGR00585312 TIGR00585, mutl, DNA mismatch repair protein MutL 1e-06
PRK00095 617 PRK00095, mutL, DNA mismatch repair protein; Revie 2e-06
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 3e-04
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 4e-04
PRK05218613 PRK05218, PRK05218, heat shock protein 90; Provisi 5e-04
COG0326623 COG0326, HtpG, Molecular chaperone, HSP90 family [ 0.002
>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information 
 Score = 92.0 bits (229), Expect = 5e-22
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 164 FGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGH 223
             AIAEL+DNS DA AT ++ISI+        +    +SI D+G GM+++++      G 
Sbjct: 4   EDAIAELIDNSIDADATNVKISIDPD------RGEDGISIEDNGGGMSYEELRNALKLGR 57

Query: 224 KQPDADDPNR-IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 282
              + +  +  +GR G+G K  ++ LG+   V ++     S   L       +   ++P 
Sbjct: 58  SSKEGERDSTTLGRKGIGMKLASLSLGRKLTVTSKKEGESSTLTLDLDDIDKEGEWDLPE 117

Query: 283 V 283
           +
Sbjct: 118 L 118

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134
>gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger Back     alignment and domain information
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL Back     alignment and domain information
>gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional Back     alignment and domain information
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 662
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 99.95
COG0326623 HtpG Molecular chaperone, HSP90 family [Posttransl 99.87
PRK05218 613 heat shock protein 90; Provisional 99.86
PTZ00130 814 heat shock protein 90; Provisional 99.85
PRK14083 601 HSP90 family protein; Provisional 99.84
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 99.84
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 99.84
KOG0019656 consensus Molecular chaperone (HSP90 family) [Post 99.71
KOG0020 785 consensus Endoplasmic reticulum glucose-regulated 99.7
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 99.69
PF0749650 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi 99.6
PRK00095617 mutL DNA mismatch repair protein; Reviewed 99.48
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 99.38
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 99.35
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 99.11
KOG1979 694 consensus DNA mismatch repair protein - MLH1 famil 98.96
KOG1978 672 consensus DNA mismatch repair protein - MLH2/PMS1/ 98.89
PRK04184535 DNA topoisomerase VI subunit B; Validated 98.78
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 98.65
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 98.6
PRK05559631 DNA topoisomerase IV subunit B; Reviewed 98.52
TIGR01055625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 98.45
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 98.33
smart00433594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 98.3
PRK05644638 gyrB DNA gyrase subunit B; Validated 98.3
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 98.26
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 98.23
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 98.2
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 97.9
TIGR01058637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 97.68
COG0187 635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 97.52
PLN03237 1465 DNA topoisomerase 2; Provisional 97.39
COG3290537 CitA Signal transduction histidine kinase regulati 97.3
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 97.24
PHA02569602 39 DNA topoisomerase II large subunit; Provisional 97.22
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 97.19
PRK10604433 sensor protein RstB; Provisional 97.12
PRK10364457 sensor protein ZraS; Provisional 97.0
PRK09467435 envZ osmolarity sensor protein; Provisional 96.92
PRK09470461 cpxA two-component sensor protein; Provisional 96.91
PTZ00109 903 DNA gyrase subunit b; Provisional 96.87
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 96.83
COG0642336 BaeS Signal transduction histidine kinase [Signal 96.78
PRK10755356 sensor protein BasS/PmrB; Provisional 96.74
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 96.74
PRK09303380 adaptive-response sensory kinase; Validated 96.73
PRK11086542 sensory histidine kinase DcuS; Provisional 96.66
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 96.63
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 96.55
PRK11006430 phoR phosphate regulon sensor protein; Provisional 96.5
PLN03128 1135 DNA topoisomerase 2; Provisional 96.45
PRK11100475 sensory histidine kinase CreC; Provisional 96.39
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 96.38
PRK10549466 signal transduction histidine-protein kinase BaeS; 96.34
PRK10815485 sensor protein PhoQ; Provisional 96.25
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 96.18
PRK11360607 sensory histidine kinase AtoS; Provisional 96.16
COG4191603 Signal transduction histidine kinase regulating C4 95.88
PRK10337449 sensor protein QseC; Provisional 95.79
PRK15347921 two component system sensor kinase SsrA; Provision 95.75
PRK11091779 aerobic respiration control sensor protein ArcB; P 95.66
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 95.63
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 95.51
PRK09835482 sensor kinase CusS; Provisional 95.47
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 95.41
PRK13837828 two-component VirA-like sensor kinase; Provisional 95.33
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 95.02
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 94.92
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 94.8
PRK10490895 sensor protein KdpD; Provisional 94.78
PRK10547670 chemotaxis protein CheA; Provisional 94.6
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 94.36
PRK10841924 hybrid sensory kinase in two-component regulatory 94.16
PRK04069161 serine-protein kinase RsbW; Provisional 94.12
PRK03660146 anti-sigma F factor; Provisional 94.0
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 93.69
PRK10618894 phosphotransfer intermediate protein in two-compon 93.49
COG3850574 NarQ Signal transduction histidine kinase, nitrate 93.48
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 93.42
PRK13557540 histidine kinase; Provisional 93.12
COG4585365 Signal transduction histidine kinase [Signal trans 92.94
PRK099591197 hybrid sensory histidine kinase in two-component r 92.86
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 91.66
COG0643716 CheA Chemotaxis protein histidine kinase and relat 91.43
COG2972456 Predicted signal transduction protein with a C-ter 91.16
PRK11644495 sensory histidine kinase UhpB; Provisional 91.08
COG3920221 Signal transduction histidine kinase [Signal trans 90.75
COG5002459 VicK Signal transduction histidine kinase [Signal 90.57
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 90.49
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 90.24
COG4192673 Signal transduction histidine kinase regulating ph 87.99
PRK13560807 hypothetical protein; Provisional 87.93
COG5000712 NtrY Signal transduction histidine kinase involved 87.27
COG4564459 Signal transduction histidine kinase [Signal trans 82.68
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=99.95  E-value=2.2e-28  Score=279.28  Aligned_cols=371  Identities=23%  Similarity=0.287  Sum_probs=271.3

Q ss_pred             CCCceeeecCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhccccc---CCCccEEEEEecccccCCCCCCEEEEE-
Q 006073          129 PEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII-  204 (662)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~v~p~~L~slsts~~~~~f~AIaELIdNA~DA---~At~V~I~I~~~~~~~~~~~~~~L~I~-  204 (662)
                      .+++-+.+...+.-.++.++|+|||+++++| .|.++|++||+|||+|.   +|+.+.|.-.  . ...+.....++|. 
T Consensus       114 ~a~~~~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd~I--~-p~~d~~i~a~~v~~  189 (775)
T KOG1845|consen  114 LAELDVIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVDYI--N-PVMDIFIRALVVQL  189 (775)
T ss_pred             cccccceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEeeee--c-ccccccceeEEeec
Confidence            3444445555555689999999999999999 79999999999999997   5666554322  1 1112223445555 


Q ss_pred             ----eCCCCCCHHHHHHHhhcccCCCCCCCCCcccccCceeeeeccccCCeEEEEEeeC------CCCceeEEEeeec--
Q 006073          205 ----DDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------DSRSIAFLSQSLN--  272 (662)
Q Consensus       205 ----DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~------g~~s~~~ls~sf~--  272 (662)
                          |||+||.++-+..+|.+|++.+. +-...+|+||+||+++.|++|.+++|++|..      .++++|+++++|.  
T Consensus       190 ~~~s~~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~  268 (775)
T KOG1845|consen  190 KRISDDGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRK  268 (775)
T ss_pred             cceeccccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeecc
Confidence                78999999999999999998875 3367899999999999999999999999943      3578999999994  


Q ss_pred             CCCccEEEcC----cccCCC---CcEEEEEecccchhhhhhhhhh-----hhhcCCCchh--hHHHhh-------cc---
Q 006073          273 QGKDNLEIPI----VSYYRK---GQFMELDTVVQSEATAKYNLKS-----IKEFSPFNKY--LIGEKA-------GL---  328 (662)
Q Consensus       273 ~g~~~i~VP~----~~~~~~---Gt~I~l~~~~~~e~~~~~~L~~-----I~kySpF~s~--~I~e~~-------~~---  328 (662)
                      ++.++++||+    ..++..   -..|..  +.  ...|..++..     +++|+||.+.  .+.+..       ..   
T Consensus       269 t~~~d~iv~~~~i~~~~e~~~~~~~~i~~--~s--~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~  344 (775)
T KOG1845|consen  269 TGKRDFIVPMRLIKMDYEKSDQLWQGILY--KS--GVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGH  344 (775)
T ss_pred             ccCCceeEecchhhhhhhcccccccceee--cc--ccccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcc
Confidence            5788999999    444321   112222  11  1223444444     9999999984  222200       01   


Q ss_pred             -cc-CCCCCcEEEEEeccCCC---CceeeeccCCCCCCCCCCcCCeeeecccccCCCCcccccCcchhhHHHHHhhhhcC
Q 006073          329 -FQ-DKCTGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLV  403 (662)
Q Consensus       329 -~~-~~~~GT~IiI~NL~r~~---~~~eLdF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLYL~  403 (662)
                       +. ...+||.+|+||+++|.   +-.+++|+.+        +++|.                -...++++.|.++||+.
T Consensus       345 ~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~~~~~~s~~sil~~~  400 (775)
T KOG1845|consen  345 QFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTYCHSHLSEASILLLT  400 (775)
T ss_pred             hhhhccCCCceeeeechhhhcccccceeeccccC--------ccccc----------------ccchhhhhhcccccchh
Confidence             11 24799999999997774   3488889765        24442                02456889999999974


Q ss_pred             --CCeEEEEcCeEeccchhhccccccee--ecccccc-------eEEEEEEccccccc-ccccceEEEEEeCeeee----
Q 006073          404 --PRMKIYVQGSLVRSRPLAKSLNKTCV--ETGIIMG-------KSAHLTLGRCQLEW-EQMNCGIFLYWHGRLIE----  467 (662)
Q Consensus       404 --Prm~I~LnG~kV~~~~i~~~L~~~~v--~~~~~~~-------~~V~it~G~~~~e~-~~~~~Gi~vY~nnRLI~----  467 (662)
                        ++|.+.+.|+.+.++.+......+..  +.+....       .......|+.+... +...+|+.|||.+|||.    
T Consensus       401 ~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~  480 (775)
T KOG1845|consen  401 RRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCR  480 (775)
T ss_pred             ccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhccc
Confidence              79999999999999998876655432  1111100       11222455555432 23456999999999999    


Q ss_pred             eeeeccccccCCCCCceEEEEEecCcccccCCCccccccCccCccCchHHHHHHHHHHHHHHHHHhhcccccccc
Q 006073          468 AYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVV  542 (662)
Q Consensus       468 ~~~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~~~eYW~~~~~~~~~~  542 (662)
                      ++||.++.  ....++++++|+..+ +.       +++|++|+|+++-.-.+++.+..++++.||...|+.+++.
T Consensus       481 ~~~k~~n~--~~s~~~~~~~il~~n-~~-------~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~  545 (775)
T KOG1845|consen  481 PFVKIDNA--TGSLGQAVIPILVGN-FV-------ETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEA  545 (775)
T ss_pred             ceeeecCC--Cccccccccceeccc-cc-------ccCCCccccccccccccchhhhhhcccccccccccccCcc
Confidence            99999985  557999999999997 43       3699999999999889999999999999999999988765

>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query662
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 2e-12
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 4e-12
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 7e-07
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 8e-07
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 9e-07
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 1e-06
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 4e-05
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 7e-05
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 7e-05
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 7e-05
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 8e-05
2o1u_A666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 1e-04
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 1e-04
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 1e-04
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 1e-04
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 1e-04
3peh_A281 Endoplasmin homolog; structural genomics, structur 2e-04
2ioq_A624 Chaperone protein HTPG; heat shock protein, HSP90; 4e-04
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 7e-04
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69 Back     alignment and structure
 Score = 61.9 bits (150), Expect = 2e-12
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 553 EWVQC--NKCRKWRMLDPGFDTKSLPVEWFCYMK--PFEGLCDLPEQK 596
            WVQC    C KWR L    D   LP  W C          CD+PE+ 
Sbjct: 17  VWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEET 64
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100 Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367 Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348 Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Length = 272 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Length = 236 Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Length = 264 Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Length = 228 Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269 Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Length = 256 Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Length = 666 Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Length = 220 Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 677 Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Length = 235 Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} Length = 239 Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Length = 281 Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Length = 624 Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Length = 559 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query662
3peh_A281 Endoplasmin homolog; structural genomics, structur 99.87
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 99.87
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 99.86
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 99.84
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 99.84
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 99.84
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.83
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 99.83
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 99.82
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 99.82
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 99.8
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 99.79
2ioq_A624 Chaperone protein HTPG; heat shock protein, HSP90; 99.78
2o1u_A666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.77
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 99.67
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 99.58
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 99.48
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 99.4
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 99.33
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 99.3
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 98.97
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 98.93
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 98.88
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 98.77
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 98.67
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 98.61
4duh_A220 DNA gyrase subunit B; structure-based drug design, 98.61
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 98.57
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 98.41
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 98.34
3lnu_A408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 98.29
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 98.16
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 98.0
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 97.95
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 97.66
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 97.53
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 97.34
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 97.34
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 97.31
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 97.31
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 97.31
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 97.24
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 97.23
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 97.23
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 97.2
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 97.2
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 97.18
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 97.11
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 97.11
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 97.06
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 97.02
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 97.02
1b3q_A379 Protein (chemotaxis protein CHEA); histine kinase, 96.9
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 96.8
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 96.62
3zxo_A129 Redox sensor histidine kinase response regulator; 96.41
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 96.05
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 95.99
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 93.83
4gut_A 776 Lysine-specific histone demethylase 1B; histone de 93.29
3o70_A68 PHD finger protein 13; PHF13, structural genomics 91.67
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 90.63
1we9_A64 PHD finger family protein; structural genomics, PH 89.21
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 88.78
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 88.65
1wee_A72 PHD finger family protein; structural genomics, PH 88.2
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
Probab=99.87  E-value=7.2e-23  Score=212.08  Aligned_cols=171  Identities=23%  Similarity=0.340  Sum_probs=130.8

Q ss_pred             ceeeecCH-HHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEE
Q 006073          142 KNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSII  204 (662)
Q Consensus       142 ~~~~~v~p-~~L~slsts~~~~~f~AIaELIdNA~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~  204 (662)
                      ...|+++- .+|..++.+.|+....+|+|||+||+||.+                ..+.|.|..      +.+...|+|.
T Consensus        25 ~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~------d~~~~tLtI~   98 (281)
T 3peh_A           25 SHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA------NKEKNILSIT   98 (281)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred             eeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEE------cCCCcEEEEE
Confidence            44566663 456667878888888999999999999964                345666653      2345799999


Q ss_pred             eCCCCCCHHHHHHHh-hcccCCCC---------CCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCC
Q 006073          205 DDGHGMTHQDVVRMT-YFGHKQPD---------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG  274 (662)
Q Consensus       205 DNG~GMt~eel~~~l-~fG~s~k~---------~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g  274 (662)
                      |||.||++++|.+.| .++.|.+.         ..+...||+|||||++++| +|++|+|.||+.+.  .++.|.+  .+
T Consensus        99 DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~~--~~~~Wes--~g  173 (281)
T 3peh_A           99 DTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNDD--EQYIWES--TA  173 (281)
T ss_dssp             ECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--ET
T ss_pred             eCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCCC--CEEEEEE--CC
Confidence            999999999998876 35555321         2357899999999998865 99999999999874  4777876  34


Q ss_pred             CccEEEcCc---ccCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHH
Q 006073          275 KDNLEIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG  323 (662)
Q Consensus       275 ~~~i~VP~~---~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~  323 (662)
                      ...+.|...   ....+||.|+|+++++. +++.++.++. |.+||.|..+||.
T Consensus       174 ~g~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~  227 (281)
T 3peh_A          174 DAKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIY  227 (281)
T ss_dssp             TSCEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEE
T ss_pred             CccEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceE
Confidence            456666433   23468999999999765 7888888875 8899999999885
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Back     alignment and structure
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 662
d1h7sa2203 d.122.1.2 (A:29-231) DNA mismatch repair protein P 5e-07
d1b63a2218 d.122.1.2 (A:-2-216) DNA mismatch repair protein M 6e-05
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein PMS2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 5e-07
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 166 AIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 225
           A+ ELV+NS DA AT +++ ++       G D  ++ + D+G G+  ++   +T   H  
Sbjct: 10  AVKELVENSLDAGATNIDLKLK-----DYGVD--LIEVSDNGCGVEEENFEGLTLKHHTS 62

Query: 226 PDADDPNRIGRFGVGFKTGAM 246
              +  +       GF+  A+
Sbjct: 63  KIQEFADLTQVETFGFRGEAL 83
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query662
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 99.89
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 99.88
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 99.87
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 99.5
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.39
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.1
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 97.97
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 97.91
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 97.75
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 97.73
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 97.73
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 97.61
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 97.58
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 97.58
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 97.5
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 97.42
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 97.35
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 96.87
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 96.84
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 96.46
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 85.77
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 82.55
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=9.7e-24  Score=209.02  Aligned_cols=171  Identities=22%  Similarity=0.289  Sum_probs=128.6

Q ss_pred             eeecCH-HHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEeC
Q 006073          144 FVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDD  206 (662)
Q Consensus       144 ~~~v~p-~~L~slsts~~~~~f~AIaELIdNA~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~DN  206 (662)
                      .|+++. .+|+.++.++|+.+..+|+|||+||.||.+                ..+.|.+..      +.+...|+|.||
T Consensus         6 ~Fqae~~~ll~ll~~~lYs~~~iflRELiqNa~DA~~~~~~~~~~~~~~~~~~~~~~I~i~~------d~~~~~l~i~Dn   79 (213)
T d2iwxa1           6 EFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDS   79 (213)
T ss_dssp             ECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHTTTCGGGGTTSCCCCEEEEE------EGGGTEEEEEEC
T ss_pred             eehhhHHHHHHHHHHhhcCCchHHHHHHHHhHHHHHHHHHHhhccCcccccCCccccccccc------ccccceeEEecC
Confidence            455554 477888888889999999999999999942                234455442      234689999999


Q ss_pred             CCCCCHHHHHHHh-hcccCCCC--------CCCCCcccccCceeeeeccccCCeEEEEEeeCCCCceeEEEeeecCCCcc
Q 006073          207 GHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN  277 (662)
Q Consensus       207 G~GMt~eel~~~l-~fG~s~k~--------~~~~~~IG~fGiGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~  277 (662)
                      |.||+.+++.+.| .+|.|.+.        ..+...||||||||+|++| ++++|.|+||+.+.....++|..  .+...
T Consensus        80 GiGMt~~~~~~~l~~ia~S~~~~~~~~~~~~~~~~~IGqFGIGfyS~Fm-vad~v~V~trs~~~~~~~~~~~~--~~~~~  156 (213)
T d2iwxa1          80 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDDEQYIWESNA--GGSFT  156 (213)
T ss_dssp             SSCCCHHHHHHHHTTCCCSTHHHHHHHHHHTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTSCCEEEEECS--SSEEE
T ss_pred             CccccHHHHHHHHhhhhcccchHHHhhhhhhhhhhhhcccccchhhhhh-hccceeEEeecCCcccceeeEec--CCCcE
Confidence            9999999998876 47877542        2346789999999998888 99999999999887655555432  22223


Q ss_pred             EEE-cCcccCCCCcEEEEEecccc-hhhhhhhhhh-hhhcCCCchhhHH
Q 006073          278 LEI-PIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG  323 (662)
Q Consensus       278 i~V-P~~~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~~I~  323 (662)
                      +.. .......+||.|+|+++++. +++.++.++. |.+||.|..+||+
T Consensus       157 ~~~~~~~~~~~~GT~I~L~lk~d~~efle~~rlk~iIkkYS~fI~~PI~  205 (213)
T d2iwxa1         157 VTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQ  205 (213)
T ss_dssp             EEECSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCCCCSSCEE
T ss_pred             EEEEeccCCCCCcEEEEEEeCccHHHhcCHHHHHHHHHHHhcCcCcCeE
Confidence            332 22233457999999998765 6778888864 9999999999885
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure