Citrus Sinensis ID: 006092

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-

MGCVTSRIDKDERVQICRQRKRAMKQLVGVRGQFAEAQLAYLRALKNTGVTLRQFTESESLELESTPPRGPALPPSPPPPLPPSPPPPPPFSPDLRKVDDDKRDELVHEENIDINEIGSSTSPPQIGTSVWDYLDPFTSSSPDQQLTTECETLEKVEEEVWAETKTEFDEEDSEEEGIPNKLREKPQQPVELVDDNSSMTSCCTKDTAEMAMVVWSKKTLDGIIKELDDYFLKASAGGKEIAVLVDINKGGSFPPHNFEESKRNMSSSAKVFSALSWSWSSRSLQFKQGAVPLGGSSEPCGPGAHCITLAKLYATEQKLYKEVKEEERTKVEHEKKSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKVAARHNAPEYPEDQEN

ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc

ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEcccHHHEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc

mgcvtsridkdERVQICRQRKRAMKQLVGVRGQFAEAQLAYLRALKNTGvtlrqfteseslelestpprgpalppspppplppsppppppfspdlrkvdddkrdelvheenidineigsstsppqigtsvwdyldpftssspdqqltTECETLEKVEEEVWAETKtefdeedseeegipnklrekpqqpvelvddnssmtscctkdTAEMAMVVWSKKTLDGIIKELDDYFLKASAGGKEIAVLVDinkggsfpphnfeeskrnmsSSAKVFSALSWswssrslqfkqgavplggssepcgpgahciTLAKLYATEQKLYKEVKEEERTKVEHEKKSMILQKqdeenhdwtkIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRLNhvtdnqsmdfttdyHHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLvdehqrsncsSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNfavgvehpelspkhpLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKVAarhnapeypedqen

mgcvtsridkdervqICRQRKRAMKQLVGVRGQFAEAQLAYLRALKNTGVTLRQFTESESLELESTPPRGPALPPSPPPPLPPSPPPPPPFSPDLRKVDDDKRDELVHeenidineigsstsppqIGTSVWDYLDPFTSSSPDQQLTTECETLEKVEEEVWAEtktefdeedseeegipnklrekpqqpvelvddnssmtSCCTKDTAEMAMVVWSKKTLDGIIKELDDYFLKASAGGKEIAVLVDINKGGSFPPHNFEESKRNMSSSAKVFSALSWSWSSRSLQFKQGAVPLGGSSEPCGPGAHCITLAKLYATEQKLYKEVKeeertkvehekksmilqkqdeenhdwtkiekirlsvdSLEVDIRRLQHSISETCSSilnvideelYPQLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKVAARhnapeypedqen

MGCVTSRIDKDERVQICRQRKRAMKQLVGVRGQFAEAQLAYLRALKNTGVTLRQFTeseslelesTpprgpalppspppplppsppppppfspdlRKVDDDKRDELVHEENIDINEIGSSTSPPQIGTSVWDYLDPFTSSSPDQQlttecetlekveeevwaetktefdeedseeeGIPNKLREKPQQPVELVDDNSSMTSCCTKDTAEMAMVVWSKKTLDGIIKELDDYFLKASAGGKEIAVLVDINKGGSFPPHNFEESKRNMSSSAKVFsalswswssrslQFKQGAVPLGGSSEPCGPGAHCITLAKLYATEQKLYkevkeeertkvehekkSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKVAARHNAPEYPEDQEN

*************VQICRQRKRAMKQLVGVRGQFAEAQLAYLRALKNTGVTLRQ*************************************************************************TSVWDYLD******************************************************************CCTKDTAEMAMVVWSKKTLDGIIKELDDYFLKASAGGKEIAVLVDINK**********************FSALSWSWSSRSLQFKQGAV********CGPGAHCITLAKLYATEQKLY****************************DWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQIEERKLHKKI************************FAVG***********LILKAAKVEALK******KAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKV***************

*****SRIDKDERVQICRQRKRAMKQLVGVRGQFAEAQLAYLRALKNTGVTLRQFTE********************************************************************************************************************************************************************GIIKELDDYFLKASAGGKEIAVLVDINKG*******************************************************CITLAKLYATEQKLYKEVKEEERTKVEHEKKSMILQ*********TKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRL*******************TAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTE***************RRLCENWQLVFDKLPEKVASEAINSFLSAIHAIF*****************************************************************************ARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEA**********************

********DKDERVQICRQRKRAMKQLVGVRGQFAEAQLAYLRALKNTGVTLRQFTES****************************PPPPFSPDLRKVDDDKRDELVHEENIDINEIGSSTSPPQIGTSVWDYLDPFTSSSPDQQLTTECETLEKVEEEV******************PNKLREKPQQPVELVDDNSSMTSCCTKDTAEMAMVVWSKKTLDGIIKELDDYFLKASAGGKEIAVLVDINKGGSFPPHNFE*************SALSWSWSSRSLQFKQGAVPLGGSSEPCGPGAHCITLAKLYATEQKLYKEVKEEERTKVEHEKKSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKVAARHNA*********

******RIDKDERVQICRQRKRAMKQLVGVRGQFAEAQLAYLRALKNTGVTLRQFTES************************************************************************WD*****************************************************************************MAMVVWSKKTLDGIIKELDDYFLKASAGGKEIAVLVDINKGGSFPPH****SKRNMSSSAKVFSALSWSW************************AHCITLAKLYATEQKLYKEVKEEERTKVEHEKKSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQ*MDFTTDYHHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFA***********HPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKV***************

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MGCVTSRIDKDERVQICRQRKRAMKQLVGVRGQFAEAQLAYLRALKNTGVTLRQFTESESLELESTPPRGPALPPSPPPPLPPSPPPPPPFSPDLRKVDDDKRDELVHEENIDINEIGSSTSPPQIGTSVWDYLDPFTSSSPDQQLTTECETLEKVEEEVWAETKTEFDEEDSEEEGIPNKLREKPQQPVELVDDNSSMTSCCTKDTAEMAMVVWSKKTLDGIIKELDDYFLKASAGGKEIAVLVDINKGGSFPPHNFEESKRNMSSSAKVFSALSWSWSSRSLQFKQGAVPLGGSSEPCGPGAHCITLAKLYATxxxxxxxxxxxxxxxxxxxxxxxxxxxxDEENHDWTKxxxxxxxxxxxxxxxxxxxxxISETCSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQIEERKLHKKxxxxxxxxxxxxxxxxxxxxxFEGNFAVGVEHPELSPKHPLILKxxxxxxxxxxxxxxxxxxxxxARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKVAARHNAPEYPEDQEN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		661
255571324		667	conserved hypothetical protein [Ricinus	0.969	0.961	0.665	0.0
225444000		652	PREDICTED: uncharacterized protein LOC10	0.975	0.989	0.646	0.0
297740802		632	unnamed protein product [Vitis vinifera]	0.945	0.988	0.614	0.0
449435906		665	PREDICTED: uncharacterized protein LOC10	0.969	0.963	0.559	0.0
297826935		692	predicted protein [Arabidopsis lyrata su	0.969	0.926	0.518	1e-159
334184684		694	uncharacterized protein [Arabidopsis tha	0.969	0.923	0.519	1e-156
356558558		628	PREDICTED: uncharacterized protein LOC10	0.931	0.980	0.483	1e-148
356532910		624	PREDICTED: uncharacterized protein LOC10	0.928	0.983	0.481	1e-141
3132478		664	hypothetical protein [Arabidopsis thalia	0.924	0.920	0.490	1e-140
449488562		535	PREDICTED: uncharacterized protein LOC10	0.767	0.947	0.563	1e-140

>gi\|255571324\|ref\|XP_002526611.1\| conserved hypothetical protein [Ricinus communis] gi\|223534051\|gb\|EEF35770.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/652 (66%), Positives = 510/652 (78%), Gaps = 11/652 (1%)

Query: 1   MGCVTSRIDKDERVQICRQRKRAMKQLVGVRGQFAEAQLAYLRALKNTGVTLRQFTESES 60
           MGCV SRI K+ERVQIC++RKR M+QLV  RG+FAEAQLAYLRALKNTGVTLRQFTESES
Sbjct: 1   MGCVASRIHKEERVQICKERKRLMRQLVVFRGEFAEAQLAYLRALKNTGVTLRQFTESES 60

Query: 61  LELESTPPRG--PALPPSPPPPLPPSPPPPPPFSPDLRKVDDDKRDELVHEENIDINEIG 118
           LELE         ALPPSPP PLPPSPPPPPPFSPDLRK  D+++ E+  EE+I INE  
Sbjct: 61  LELEELENTSYVQALPPSPPLPLPPSPPPPPPFSPDLRKSTDNQKQEIDREESISINEDD 120

Query: 119 SSTSPPQ-IGTSVWDYLDPFTSSSPDQQLTTECETLEKVEEEVWAETKTEFDEEDSEEEG 177
            ST PP  I TS W+  DPF   SP  Q  ++      VEEE WAETKTEF+EED EE  
Sbjct: 121 CSTPPPPPIVTSSWNIWDPFEPPSPQHQEKSKL-VESAVEEENWAETKTEFEEEDREEVN 179

Query: 178 I----PNKLREKPQQ--PVELVDDNSSMTSCCTKDTAEMAMVVW-SKKTLDGIIKELDDY 230
           +     + L +  QQ  P++LVDD+SSM S CTKDT +  MV W +KKTL+GIIKELDDY
Sbjct: 180 VGKVASSSLPQVQQQLPPLKLVDDDSSMVSWCTKDTTDGVMVHWRNKKTLEGIIKELDDY 239

Query: 231 FLKASAGGKEIAVLVDINKGGSFPPHNFEESKRNMSSSAKVFSALSWSWSSRSLQFKQGA 290
           FLKASAGGKEIAVL+DI+KG +    N +E+KR  S+SAKVFSALSWSWSS+ LQ+ + A
Sbjct: 240 FLKASAGGKEIAVLMDISKGDTSLLQNSKENKRKRSNSAKVFSALSWSWSSKLLQYAKDA 299

Query: 291 VPLGGSSEPCGPGAHCITLAKLYATEQKLYKEVKEEERTKVEHEKKSMILQKQDEENHDW 350
             +   SEPC PGAHC+TL KLYA EQKLYKEVKEEE TK+EHEKKSM+L KQ+EENHDW
Sbjct: 300 TEVSNPSEPCKPGAHCVTLDKLYAAEQKLYKEVKEEEMTKIEHEKKSMLLLKQEEENHDW 359

Query: 351 TKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISGLMRMWRKMYEC 410
           TK EK R SV+ LE DI RLQHSIS TCS IL +ID EL PQL  L SGL  MWR MYEC
Sbjct: 360 TKTEKTRFSVEGLETDISRLQHSISRTCSLILELIDVELCPQLVALTSGLKSMWRTMYEC 419

Query: 411 LQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLS 470
            QVQNHISQ+LNH+TDNQS+D TTDYH QATAQL  EVTSW++SFCKL K Q++YVRTL 
Sbjct: 420 HQVQNHISQQLNHLTDNQSVDLTTDYHRQATAQLVTEVTSWHSSFCKLMKSQKEYVRTLC 479

Query: 471 GWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQI 530
            WI+LT CLVD++Q+S+CSS +R LCE WQL+FD+LP+K+ASEAI S LSAI  I LQQ 
Sbjct: 480 RWIQLTNCLVDDNQQSSCSSAVRSLCEQWQLIFDRLPDKIASEAIKSLLSAIQMIMLQQD 539

Query: 531 EERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALK 590
           EE  LHKK D+LEKRL+KE  S+AEME++ +  FA G    +LSPKHPL +K AK EALK
Sbjct: 540 EEYNLHKKSDKLEKRLEKELFSLAEMEKKVDWRFAAGDAQSDLSPKHPLSIKRAKTEALK 599

Query: 591 KRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHS 642
           KRV++EK+KYLN+ ++T+ MTLNNLKT LP+VFQAL+GFS+ASA+AFEA+HS
Sbjct: 600 KRVDTEKSKYLNSVQVTRVMTLNNLKTGLPSVFQALLGFSSASAQAFEAVHS 651

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225444000\|ref\|XP_002274665.1\| PREDICTED: uncharacterized protein LOC100249833 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297740802\|emb\|CBI30984.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449435906\|ref\|XP_004135735.1\| PREDICTED: uncharacterized protein LOC101216940 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297826935\|ref\|XP_002881350.1\| predicted protein [Arabidopsis lyrata subsp. lyrata] gi\|297327189\|gb\|EFH57609.1\| predicted protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334184684\|ref\|NP_001189676.1\| uncharacterized protein [Arabidopsis thaliana] gi\|330253914\|gb\|AEC09008.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356558558\|ref\|XP_003547572.1\| PREDICTED: uncharacterized protein LOC100809759 [Glycine max]	Back alignment and taxonomy information

>gi\|356532910\|ref\|XP_003535012.1\| PREDICTED: uncharacterized protein LOC100787690 [Glycine max]	Back alignment and taxonomy information

>gi\|3132478\|gb\|AAC16267.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449488562\|ref\|XP_004158087.1\| PREDICTED: uncharacterized protein LOC101224460 [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		661
TAIR\|locus:2081922		796	AT3G60320 "AT3G60320" [Arabido	0.638	0.530	0.308	1.2e-68
TAIR\|locus:2179504		775	AT5G25590 [Arabidopsis thalian	0.645	0.550	0.264	4.1e-42
TAIR\|locus:2018174		798	AT1G52320 "AT1G52320" [Arabido	0.647	0.536	0.25	1.8e-41
TAIR\|locus:2036900		953	AT1G21740 [Arabidopsis thalian	0.493	0.342	0.267	6.2e-30
TAIR\|locus:2126510		725	AT4G30130 "AT4G30130" [Arabido	0.531	0.484	0.255	1.5e-29
TAIR\|locus:2059284		743	AT2G27090 [Arabidopsis thalian	0.352	0.313	0.295	2.4e-28
TAIR\|locus:2204740		879	AT1G77500 [Arabidopsis thalian	0.649	0.488	0.25	6e-27
TAIR\|locus:2827650		733	AT2G17110 [Arabidopsis thalian	0.506	0.457	0.257	3.5e-24
TAIR\|locus:2059057		814	AT2G19090 "AT2G19090" [Arabido	0.373	0.303	0.274	1.5e-21
TAIR\|locus:2135292		657	AT4G39790 "AT4G39790" [Arabido	0.323	0.325	0.268	6.9e-21

TAIR\|locus:2081922 AT3G60320 "AT3G60320" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 573 (206.8 bits), Expect = 1.2e-68, Sum P(3) = 1.2e-68
 Identities = 135/438 (30%), Positives = 232/438 (52%)

Query:   206 DTAEMAMVVWSKKTLDGIIKELDDYFLKASAGGKEIAVLVDINKGGSFPPHNFEESKRNM 265
             D A+M MVV   + L  II  + + F KA+A G++++ ++++  G +    +F + K+ +
Sbjct:   344 DIADMKMVV-RHRDLKEIIDAIKENFDKAAASGEQVSQMLEL--GRAELDRSFSQLKKTV 400

Query:   266 SSSAKVFXXXXXXXXXXXXQFKQGAVPLGGSSEPCGPGAHCITLAKLYATEQKLYXXXXX 325
               S+ +                +  +      +P    + C TL +L A E+KLY     
Sbjct:   401 IHSSSLLSNLSSTWTSKPPLAVKYRIDTTALDQPNSSKSLCSTLDRLLAWEKKLYEEIKA 460

Query:   326 XXXXXXXXXXXSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVI 385
                           LQ Q+ +  D  K++K + S+  L+  I     +++ T ++I+ + 
Sbjct:   461 REGFKIEHEKKLSQLQSQEYKGEDEAKLDKTKASITRLQSLIIVTSQAVTTTSTAIIRLR 520

Query:   386 DEELYPQLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQSM-DFTTDYHHQATAQL 444
             D +L PQL  L  G M MW+ M++  + QN I +++  + +     + T++ H QAT  L
Sbjct:   521 DTDLVPQLVELCHGFMYMWKSMHQYHETQNSIVEQVRGLINRSGKGESTSELHRQATRDL 580

Query:   445 EAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSST---IRRLCENWQL 501
             E+ V+SW++SF  L KFQRD++ ++  W KLT   V +   +N           C+ W+L
Sbjct:   581 ESAVSSWHSSFSSLIKFQRDFIHSVHAWFKLTLLPVCQEDAANHHKEPLDAYAFCDEWKL 640

Query:   502 VFDKLPEKVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFE 561
               D++P+ VASEAI SF++ +H I  +Q +E K+ K+ +   K L+K+ +S+  +E+++ 
Sbjct:   641 ALDRIPDTVASEAIKSFINVVHVISAKQADEHKIKKRTESASKELEKKASSVRNLERKYY 700

Query:   562 GNFA-VGVEHPELSP--KH------PLILKAAKVEALKKRVESEKAKYLNAARITQAMTL 612
              +++ VGV  PE  P  +H      PL  K +++   ++RVE E  KY  A  +T+AMTL
Sbjct:   701 QSYSMVGVGLPESGPDNQHMLDARDPLSDKKSELAVCQRRVEEEMVKYSKAIEVTRAMTL 760

Query:   613 NNLKTSLPNVFQALMGFS 630
             NNL+T LP VFQ+L  FS
Sbjct:   761 NNLQTGLPGVFQSLTSFS 778

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR\|locus:2179504 AT5G25590 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2018174 AT1G52320 "AT1G52320" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2036900 AT1G21740 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2126510 AT4G30130 "AT4G30130" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2059284 AT2G27090 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2204740 AT1G77500 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2827650 AT2G17110 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2059057 AT2G19090 "AT2G19090" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2135292 AT4G39790 "AT4G39790" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028394001	SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (632 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		661
pfam04782		309	pfam04782, DUF632, Protein of unknown function (DU	1e-92
pfam04783		60	pfam04783, DUF630, Protein of unknown function (DU	1e-21
TIGR02031		589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	1e-04
pfam10138		98	pfam10138, Tellurium_res, Tellurium resistance pro	4e-04
pfam03276		582	pfam03276, Gag_spuma, Spumavirus gag protein	5e-04
pfam04554		57	pfam04554, Extensin_2, Extensin-like region	7e-04
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PRK13406		584	PRK13406, bchD, magnesium chelatase subunit D; Pro	0.002
PHA01732		94	PHA01732, PHA01732, proline-rich protein	0.003
pfam06346		160	pfam06346, Drf_FH1, Formin Homology Region 1	0.003
pfam07174		297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.003
pfam07174		297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.003
pfam04554		57	pfam04554, Extensin_2, Extensin-like region	0.004
pfam06346		160	pfam06346, Drf_FH1, Formin Homology Region 1	0.004

>gnl\|CDD\|218262 pfam04782, DUF632, Protein of unknown function (DUF632)	Back alignment and domain information

 Score =  288 bits (740), Expect = 1e-92
 Identities = 117/317 (36%), Positives = 168/317 (52%), Gaps = 18/317 (5%)

Query: 219 TLDGIIKELDDYFLKASAGGKEIAVLVDINKGGSFPPH-NFEESKRNMSSSAKVFSALSW 277
            L  ++KE+++YFLKA+  GKE++ L++  K    P H  F + K++ SS  +V   L+W
Sbjct: 1   DLAEVVKEIEEYFLKAAESGKEVSKLLEAGK---VPYHSKFSDLKKDHSS--RVMKPLTW 55

Query: 278 SWSSRSLQFKQGAVPLGGSSEPCGPGAHCITLAKLYATEQKLYKEVKEEERTKVEHEKKS 337
           + S +               E    G+H  TL KLYA E+KLY EVK EE+ ++E+EKK 
Sbjct: 56  NRSFKPKSELDSD---SFEDEDMESGSHSSTLDKLYAWEKKLYDEVKAEEKLRIEYEKKC 112

Query: 338 MILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLI 397
             L++ D+   + +KIEK R +V  L   I     ++      I  + DEELYPQL  LI
Sbjct: 113 AQLRRLDKRGAESSKIEKTRAAVRDLHTRIIVSIQAVDSISKRINKLRDEELYPQLVELI 172

Query: 398 SGLMRMWRKMYECLQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEVTSWYNSFCK 457
            GL RMW+ M EC ++Q HI Q    +  + S   T++ H QAT QLEAE+  W++SF  
Sbjct: 173 HGLTRMWKSMLECHEIQLHIIQEAKLLDSSPSGKPTSESHRQATLQLEAELREWHSSFSN 232

Query: 458 LTKFQRDYVRTLSGWIKLT---------ECLVDEHQRSNCSSTIRRLCENWQLVFDKLPE 508
               QR YV+ L+GW+KL          +           +  I  LCE W    ++LP+
Sbjct: 233 WIDAQRSYVKALNGWLKLCLIPEPIETDDGEPPFSPGRLGAPPIFALCEEWSQALERLPD 292

Query: 509 KVASEAINSFLSAIHAI 525
           K   EAI SF S +H I
Sbjct: 293 KEVKEAIKSFASVVHTI 309

This plant protein may be a leucine zipper, but there is no experimental evidence for this. Length = 309

>gnl\|CDD\|191091 pfam04783, DUF630, Protein of unknown function (DUF630)	Back alignment and domain information

>gnl\|CDD\|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D	Back alignment and domain information

>gnl\|CDD\|220596 pfam10138, Tellurium_res, Tellurium resistance protein	Back alignment and domain information

>gnl\|CDD\|217469 pfam03276, Gag_spuma, Spumavirus gag protein	Back alignment and domain information

>gnl\|CDD\|218146 pfam04554, Extensin_2, Extensin-like region	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional	Back alignment and domain information

>gnl\|CDD\|222828 PHA01732, PHA01732, proline-rich protein	Back alignment and domain information

>gnl\|CDD\|148139 pfam06346, Drf_FH1, Formin Homology Region 1	Back alignment and domain information

>gnl\|CDD\|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)	Back alignment and domain information

>gnl\|CDD\|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)	Back alignment and domain information

>gnl\|CDD\|218146 pfam04554, Extensin_2, Extensin-like region	Back alignment and domain information

>gnl\|CDD\|148139 pfam06346, Drf_FH1, Formin Homology Region 1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		661
PF04782		312	DUF632: Protein of unknown function (DUF632); Inte	100.0
PF04783		60	DUF630: Protein of unknown function (DUF630); Inte	99.93
KOG1924		1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	96.81
KOG1924		1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	96.55
cd07599		216	BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o	96.29
cd07591		224	BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o	95.3
cd07676		253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	94.13
cd07598		211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	93.81
cd07675		252	F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/	93.54
cd07653		251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	93.22
cd07657		237	F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin	92.48
COG5178		2365	PRP8 U5 snRNP spliceosome subunit [RNA processing	90.41
PF03114		229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	90.16
PF01213		312	CAP_N: Adenylate cyclase associated (CAP) N termin	87.4
KOG1923		830	consensus Rac1 GTPase effector FRL [Signal transdu	86.68
KOG2675		480	consensus Adenylate cyclase-associated protein (CA	86.33
cd07603		200	BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of	84.3
cd07637		200	BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	83.67

>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain	Back alignment and domain information

Probab=100.00  E-value=7.3e-109  Score=866.64  Aligned_cols=302  Identities=43%  Similarity=0.649  Sum_probs=278.6

Q ss_pred             cHHHHHHHHHHHHHHHhcccchhhhhhhcCCCCCCCCCcccccccccccccccccccccccccccc-cccCCCCCCCCCC
Q 006092          219 TLDGIIKELDDYFLKASAGGKEIAVLVDINKGGSFPPHNFEESKRNMSSSAKVFSALSWSWSSRSL-QFKQGAVPLGGSS  297 (661)
Q Consensus       219 dl~ev~keI~~~F~kAs~sg~eVs~mLEa~k~~~~~~~~~~~~~~k~~~s~~vl~~~s~s~s~k~~-~~~~d~~~~~~~~  297 (661)
                      ||++||||||++|+|||+||+|||+||||+|++||+.+  .+.++++++|++++++++|+|++++. ....++   .+.+
T Consensus         1 dl~ev~kei~~~F~kAs~sg~eVs~lLE~~k~~~~~~~--~~~~~~~~~s~~~~~~~~w~~s~~s~~~~~~~~---~~~~   75 (312)
T PF04782_consen    1 DLLEVVKEIDDYFLKASESGKEVSRLLEAGKIHYHSNF--SDLKGKVDHSSRVLSPISWSRSSSSRISNSDSD---FDEE   75 (312)
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCccc--ccccccccchhhhccccccCCCCCCcccccccC---cCcc
Confidence            79999999999999999999999999999999999865  34567788999999999999988763 222121   1223


Q ss_pred             CCCCCCchhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhHHHHHhhHHHH
Q 006092          298 EPCGPGAHCITLAKLYATEQKLYKEVKEEERTKVEHEKKSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISET  377 (661)
Q Consensus       298 ~~~~~gshssTLdkLyaWEKKLY~EVKa~E~~r~~yekK~~~Lr~~d~rg~~~~~idkTra~Vk~L~tri~Vaiq~vdsi  377 (661)
                      .++++|+||||||||||||||||+|||++|+||++|||||++||+||+||+++.+|||||++|++|||||+|+||+||+|
T Consensus        76 ~~~~~gshssTLdkLyaWEKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~kg~~~~kidkTra~v~~L~tri~Vaiq~v~si  155 (312)
T PF04782_consen   76 ECMGSGSHSSTLDKLYAWEKKLYDEVKAEEKLRIEYEKKCKQLRKQDAKGADSSKIDKTRASVKDLHTRIRVAIQSVDSI  155 (312)
T ss_pred             cCcccchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHhHHH
Q 006092          378 CSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEVTSWYNSFCK  457 (661)
Q Consensus       378 s~~I~kLRDeEL~PQL~eLi~GL~~MWk~M~ecH~~Q~~ii~~~~~l~~~~~~~~~s~~h~~at~qLe~el~~W~~sF~~  457 (661)
                      |++|+|||||||||||+|||+||++|||+|+||||+|++||+++++|++++++.+|+++||+||+|||.||++|++||++
T Consensus       156 S~~I~kLRDeEL~PQL~eLi~Gl~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~~s~~h~~at~~Le~el~~W~~sF~~  235 (312)
T PF04782_consen  156 SKRIEKLRDEELYPQLVELIQGLMRMWKSMLECHQKQFQIIQEAKSLDSSPSNEPTSESHRQATLQLEAELQNWHSSFCK  235 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccc-cC-----CCCCC---CCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHH
Q 006092          458 LTKFQRDYVRTLSGWIKLTECLV-DE-----HQRSN---CSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAI  525 (661)
Q Consensus       458 ~i~~Qk~Yv~aLn~WL~~~~~~~-~~-----~~~~~---~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~~~v~~i  525 (661)
                      ||++||+||+||||||++|+.++ ++     .++++   ++||||+||++|+++||+||+++|++||++|+++||+|
T Consensus       236 ~i~~Qk~YV~aLn~WL~~~l~~~~~~~~~~~~~~sp~~~~aPpIf~lC~~W~~aLd~lp~k~v~~AIk~f~~~v~~i  312 (312)
T PF04782_consen  236 WIKAQKSYVKALNGWLKLCLMQEPEETSDGRPPSSPRRSGAPPIFVLCNDWSQALDRLPDKEVSEAIKSFAAVVHHI  312 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCccccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999643 22     23444   49999999999999999999999999999999999976

The proteins are found only in plants and their functions are unknown.

>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO	Back alignment and domain information

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins	Back alignment and domain information

>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins	Back alignment and domain information

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17	Back alignment and domain information

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)	Back alignment and domain information

>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like	Back alignment and domain information

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins	Back alignment and domain information

>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	Back alignment and domain information

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Back alignment and domain information

>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals	Back alignment and domain information

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]	Back alignment and domain information

>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins	Back alignment and domain information

>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		661
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1ei8_A		29	Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP-	6e-04
1ei8_A		29	Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP-	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 65.6 bits (159), Expect = 3e-11
 Identities = 74/492 (15%), Positives = 143/492 (29%), Gaps = 103/492 (20%)

Query: 205 KDTAEMAMVVWSKKTLDGIIKELDD----YFLKASAGGKEIAVLVDINKGGSFPPHNFEE 260
           KD  +M   + SK+ +D II   D       L                         F  
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-------------------------FWT 70

Query: 261 SKRNMSSSAKVF--SAL----SWSWSSRSLQFKQGAVPLGGSSEPCGPGAHCITLAKLYA 314
                    + F    L     +  S    + +Q ++      E            +LY 
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE---------QRDRLYN 121

Query: 315 TEQKLYK-EVKEEERTKVEHEKKSMILQKQDEEN---HDWTKIEKIRLSVDSLEVDIRRL 370
             Q   K  V    R +   + +  +L+ +  +N          K  +++D      +  
Sbjct: 122 DNQVFAKYNVS---RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL-SYKVQ 177

Query: 371 QH--------SISETCSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRLN 422
                     ++    S       E +   L  L+  +   W          N I  R++
Sbjct: 178 CKMDFKIFWLNLKNCNS------PETVLEMLQKLLYQIDPNWTS--RSDHSSN-IKLRIH 228

Query: 423 HVTDNQSMDFTTDYHHQATAQLEAEVTSWY----NSF---CK--LTKFQRDYVRTLSGWI 473
            +         +  +      L   V        N+F   CK  LT   +     LS   
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLL-NV--QNAKAWNAFNLSCKILLTTRFKQVTDFLSA-A 284

Query: 474 KLTECLVDEHQRSNCSSTIRRLCENW-QLVFDKLPEKVASEAINSFLSAIHAIFLQQIEE 532
             T   +D H  +     ++ L   +       LP +V +   N    +I A  ++    
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT--TNPRRLSIIAESIRDGLA 342

Query: 533 RK---LHKKIDRLEKRLQKEFNSM--AEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVE 587
                 H   D+L   ++   N +  AE  + F+   +V      +      ++    ++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 588 ALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKVA 647
           +    V ++  KY    +            S+P+++  L        +   ALH    + 
Sbjct: 402 SDVMVVVNKLHKYSLVEK-----QPKESTISIPSIYLEL----KVKLENEYALHR--SIV 450

Query: 648 ARHNAPE-YPED 658
             +N P+ +  D
Sbjct: 451 DHYNIPKTFDSD 462

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1ei8_A Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP- Gly)5; triple helix, contractIle protein; 2.00A {Synthetic} SCOP: k.3.1.1 Length = 29	Back alignment and structure

>1ei8_A Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP- Gly)5; triple helix, contractIle protein; 2.00A {Synthetic} SCOP: k.3.1.1 Length = 29	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		661
2efl_A		305	Formin-binding protein 1; EFC domain, structural g	95.21
2efk_A		301	CDC42-interacting protein 4; EFC domain, structura	94.53
2x3v_A		337	Syndapin I, protein kinase C and casein kinase sub	92.73
3haj_A		486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	92.38
2v0o_A		276	FCHO2, FCH domain only protein 2; lipid-binding pr	91.95
2fic_A		251	Bridging integrator 1; BAR domain, homodimer, coil	91.04
2q12_A		265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	90.87
4dyl_A		406	Tyrosine-protein kinase FES/FPS; structural genomi	89.4
4h8s_A		407	DCC-interacting protein 13-beta; BAR domain, pleck	86.96
3aco_A		350	Pacsin2, protein kinase C and casein kinase substr	85.64
3abh_A		312	Pacsin2, protein kinase C and casein kinase substr	80.84

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4	Back alignment and structure

Probab=95.21  E-value=3  Score=42.10  Aligned_cols=169  Identities=14%  Similarity=0.184  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhh----H
Q 006092          455 FCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQ----I  530 (661)
Q Consensus       455 F~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~~~v~~i~~~Q----~  530 (661)
                      |..=...-++|.+.|..|-+...-...  .. ...|..+.+...|...+..+  +.+...-..|+..|..-+...    .
T Consensus        37 ~~eRa~iE~eYak~L~kLa~~~~~~~~--~~-~~~~~~~t~~~aw~~~~~~~--e~~a~~h~~~a~~l~~~v~~~l~~~~  111 (305)
T 2efl_A           37 VKERTEIELSYAKQLRNLSKKYQPKKN--SK-EEEEYKYTSCKAFISNLNEM--NDYAGQHEVISENMASQIIVDLARYV  111 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCC----------CTTSHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccc--cC-ccccccccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445567789999999999997542110  00 01344678889998777654  333444444444442211110    0


Q ss_pred             HHHH-Hhh------------------hhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHH
Q 006092          531 EERK-LHK------------------KIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKK  591 (661)
Q Consensus       531 eE~~-~k~------------------k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrk  591 (661)
                      ++++ .++                  .++.+.+.|+...+.++....++.....  +  ... ....+...+.+++..++
T Consensus       112 ~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~--~--~~~-s~~~~eK~~~k~~~~~~  186 (305)
T 2efl_A          112 QELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDA--D--INV-TKADVEKARQQAQIRHQ  186 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C--TTS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c--ccc-cHhHHHHHHHHHHHHHH
Confidence            1111 111                  1223334444444555544444321100  0  000 01123333455666677


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHH
Q 006092          592 RVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNAS  633 (661)
Q Consensus       592 rle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~  633 (661)
                      +++..+..|..+|..++..--.....-+|.+|+.|..+=...
T Consensus       187 ~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~r  228 (305)
T 2efl_A          187 MAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERR  228 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999999988877655666777888877555443333

PyMOL of 2efl

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4	Back alignment and structure

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A	Back alignment and structure

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}	Back alignment and structure

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}	Back alignment and structure

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A	Back alignment and structure

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A	Back alignment and structure

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}	Back alignment and structure

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}	Back alignment and structure

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}	Back alignment and structure

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		661
d1jvra_		137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	0.003

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		661
d1urua_		217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	96.53
d2efla1		288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	94.46
d2elba1		268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	93.42
d1i4da_		200	Arfaptin, Rac-binding fragment {Human (Homo sapien	92.99
d2efka1		279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	88.47

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.53  E-value=0.16  Score=46.35  Aligned_cols=193  Identities=13%  Similarity=0.116  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC---CChHHHHHHHHHHhhccCChHHHHH
Q 006092          437 HHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNC---SSTIRRLCENWQLVFDKLPEKVASE  513 (661)
Q Consensus       437 h~~at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~---~ppIf~lc~~W~~~ld~lp~~~v~~  513 (661)
                      +.+....++..+...+..+.+|+++.+.+..+...+-.-. ..... +....   .-.++..|......+...=...|++
T Consensus        17 ~~~~~~~~e~~l~~l~k~~~~~~~~~~~~~~~~~~~~~~l-~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   94 (217)
T d1urua_          17 HLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSV-CEIYE-PQWSGYDALQAQTGASESLWADFAHKLGDQVLI   94 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHSC-TTSTTHHHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445566777777777777777777777777777665532 11111 11111   1122223333222222111234566


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHH
Q 006092          514 AINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRV  593 (661)
Q Consensus       514 aIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrl  593 (661)
                      -++.|...+..+       .+..++.+....++++-...+.....+......          ...+..-..+++..++..
T Consensus        95 pL~~~~~~~~~~-------~~~~kkr~~~~~dyd~~~~~l~k~~~k~~~~~~----------~~~l~~~e~~~~~a~~~f  157 (217)
T d1urua_          95 PLNTYTGQFPEM-------KKKVEKRNRKLIDYDGQRHSFQNLQANANKRKD----------DVKLTKGREQLEEARRTY  157 (217)
T ss_dssp             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTB----------CCTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccc----------hhhhHHHHHHHHHHHHHH
Confidence            666665544333       112233455556777766666665544322110          011222234677777777


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 006092          594 ESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKVAA  648 (661)
Q Consensus       594 e~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~~~~~  648 (661)
                      +.-...+..-+.........-+...|...+.+...|-..+.+.|++|....++..
T Consensus       158 e~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~l~~~~~~l~  212 (217)
T d1urua_         158 EILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLA  212 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            7777777666777777777888999999999999999999999999988776644

PyMOL of d1urua_

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure