Citrus Sinensis ID: 006106

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-
MAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
cccccccccccHHHHHHHHHHHHcccccccEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHccccEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccc
cccccccccHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHcHccccccHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHEEEEccccccccccHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccEEEEcccHHHHHHHHHHccccccccHccccccccccccEEEEEEEEEccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccc
maigcydaGVQELLVIDDLLSALVGIEGRYISIKRRVnhvhgndtydstvTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFycqpmlgsMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVyegviddpygefFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMrecghsaqvptsenskllsfgsnhhYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRStaaaadpchedltcsVERSSLLKRMATLKGVeiktssdsvdleqpvsitglETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLtfevlepnwhVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISssidlpkleepsdgfsgsekfkRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQslgpilssssqaepYLTHLAQLVLGVGFDK
MAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTaaaadpchedltcsverssLLKRMATLKGveiktssdsvdleqpvSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPsdgfsgsekfkrlkLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
MAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
**IGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQV******KLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEI*******DLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSID************************LSQVQKVMIRDATVTESILKFEREFNNE***************PYLTHLAQLVLGVG***
*A***YDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLL***LTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKG**************PVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSI********************************MIRDATVTESILKFEREFNNELQSLGPI*S**********HLAQLVLGVGFD*
MAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
*AIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKG**********D*EQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSE**KRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGF**
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MAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFxxxxxxxxxxxxxxxxxxxxxFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query661 2.2.26 [Sep-21-2011]
Q921G8905 Gamma-tubulin complex com yes no 0.845 0.617 0.401 1e-125
Q9BSJ2902 Gamma-tubulin complex com yes no 0.845 0.619 0.397 1e-124
Q5R5J6902 Gamma-tubulin complex com yes no 0.845 0.619 0.394 1e-123
Q9XYP7852 Gamma-tubulin complex com yes no 0.871 0.676 0.319 3e-93
Q9Y705784 Spindle pole body compone yes no 0.863 0.728 0.311 1e-73
Q95ZG3 1335 Spindle pole body compone yes no 0.555 0.274 0.323 4e-62
Q96CW5907 Gamma-tubulin complex com no no 0.738 0.538 0.262 2e-45
P58854905 Gamma-tubulin complex com no no 0.738 0.539 0.260 2e-44
O73787906 Gamma-tubulin complex com N/A no 0.732 0.534 0.258 2e-44
Q9XYP8917 Gamma-tubulin complex com no no 0.512 0.369 0.263 5e-30
>sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=2 Back     alignment and function desciption
 Score =  450 bits (1158), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/581 (40%), Positives = 358/581 (61%), Gaps = 22/581 (3%)

Query: 1   MAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDL 60
           + IG      QE  V++DLL  LVG++GRYI+ +                TF VD ++DL
Sbjct: 203 LPIGTLPLASQESAVVEDLLYVLVGVDGRYITAQPLAGR--------QNRTFLVDPNLDL 254

Query: 61  ALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQF 120
           +++E+  RI P+  S+    +F+E +S F+ G VNHA AA++R L+ +Y  +V QLE   
Sbjct: 255 SIRELVNRILPVAASYSTVTRFIEEKSSFEYGQVNHALAAAMRTLVKEYLILVTQLEQLH 314

Query: 121 RLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRS 180
           R G LS+Q LWFY QP + ++  ++++          G + L+LL  ++    GD+  + 
Sbjct: 315 RQGLLSLQKLWFYIQPAMRTIDILASLATSVDKGECVGGSTLSLLHDRSFNYTGDSQAQE 374

Query: 181 LLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYS 240
           L   +T+ AS  Y  ILE+W+Y G+I DPY EF + E+  L KE + +DY+ KYW QRY+
Sbjct: 375 LCLYLTKAASAPYFEILEKWIYRGIIHDPYSEFMV-EEHELRKEKIQEDYNDKYWDQRYT 433

Query: 241 -LKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVA 299
            L   IPSFL  +AGKIL+TGKYLNV+RECGH    P ++  +++       Y+E ++ A
Sbjct: 434 VLPQQIPSFLQKVAGKILSTGKYLNVVRECGHDVTCPVAK--EIIYTLKERAYVEQIEKA 491

Query: 300 YEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKL 359
           + +AS  LL+ + E  +L+  LRSIKRY L+DQGDF VHFMD+  EEL K +++I + +L
Sbjct: 492 FNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLTEEELRKPVEDIILTRL 551

Query: 360 QSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIK-----TSSDSVDLEQP 414
           ++LL++ALR + A  DP  +DL   +    L+ ++  +  +E K     T +D  +L   
Sbjct: 552 EALLELALRMSTANTDPFKDDLKIELMPHDLITQLLRVLAIETKQEKAMTHADPTEL--- 608

Query: 415 VSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARA 474
            +++GLE FS  Y V+WPLS++I+RKALT+YQM+FR +F+CKHVERQLC  W  ++ A+ 
Sbjct: 609 -TLSGLEAFSFDYMVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQ 667

Query: 475 FN-ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHD 533
               S    + +  L + ML F+ ++ +Y+ FEV+EP WH++   L++A +ID+V+ HH 
Sbjct: 668 HALHSAKWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGHHT 727

Query: 534 FFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISS 574
            FLD CL++C+L  P+LLK   +L S+C+ +    Q    S
Sbjct: 728 SFLDNCLKDCMLTNPELLKVFSKLMSVCVMFTNCMQKFTQS 768
Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.
Mus musculus (taxid: 10090)
>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2 Back     alignment and function description
>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9XYP7|GCP2_DROME Gamma-tubulin complex component 2 homolog OS=Drosophila melanogaster GN=Grip84 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y705|ALP4_SCHPO Spindle pole body component alp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp4 PE=1 SV=1 Back     alignment and function description
>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2 Back     alignment and function description
>sp|Q96CW5|GCP3_HUMAN Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2 Back     alignment and function description
>sp|P58854|GCP3_MOUSE Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2 Back     alignment and function description
>sp|O73787|GCP3_XENLA Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1 Back     alignment and function description
>sp|Q9XYP8|GCP3_DROME Gamma-tubulin complex component 3 homolog OS=Drosophila melanogaster GN=l(1)dd4 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query661
296087642702 unnamed protein product [Vitis vinifera] 0.983 0.925 0.824 0.0
224112407711 tubulin gamma complex-associated protein 0.968 0.900 0.786 0.0
449461078707 PREDICTED: spindle pole body component 9 0.980 0.916 0.789 0.0
359488832681 PREDICTED: gamma-tubulin complex compone 0.951 0.923 0.811 0.0
255578011713 gamma-tubulin complex component, putativ 0.981 0.910 0.757 0.0
356560679664 PREDICTED: gamma-tubulin complex compone 0.978 0.974 0.768 0.0
30686344679 Spc97 / Spc98 family of spindle pole bod 0.940 0.916 0.756 0.0
18418288678 Spc97 / Spc98 family of spindle pole bod 0.940 0.917 0.756 0.0
357513163672 Gamma-tubulin complex component [Medicag 0.971 0.955 0.764 0.0
297807763678 hypothetical protein ARALYDRAFT_488606 [ 0.940 0.917 0.75 0.0
>gi|296087642|emb|CBI34898.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1045 bits (2701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/657 (82%), Positives = 593/657 (90%), Gaps = 7/657 (1%)

Query: 2   AIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLA 61
           AI CY A VQEL+VIDDLLSALVGIEGRYISIKR      G + +D  VTFQ+DASMDLA
Sbjct: 50  AIACYHASVQELIVIDDLLSALVGIEGRYISIKR----FRGKE-FD--VTFQIDASMDLA 102

Query: 62  LQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFR 121
           LQE+AKRIFPLCESF+L  QFVESRSQFK GLVNHAFAA+LRA LLDY+AMVAQLEHQFR
Sbjct: 103 LQELAKRIFPLCESFLLINQFVESRSQFKTGLVNHAFAAALRAFLLDYQAMVAQLEHQFR 162

Query: 122 LGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSL 181
           LGRLSIQGLWFYCQPM+GSM A+S VIHKASANNF GSAVLNLLQSQAKAMAGDN VRSL
Sbjct: 163 LGRLSIQGLWFYCQPMMGSMLALSTVIHKASANNFMGSAVLNLLQSQAKAMAGDNAVRSL 222

Query: 182 LEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL 241
           LEKMTQCAS+AYLGILERWVYEGVIDDPYGEFFIAE+KSL KESLTQDYDAKYW QRYSL
Sbjct: 223 LEKMTQCASSAYLGILERWVYEGVIDDPYGEFFIAENKSLQKESLTQDYDAKYWGQRYSL 282

Query: 242 KDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYE 301
           KDGIPSFLAN AG ILTTGKYLNVMRECGH+ QVP SE+SK +SFGSNHHYLEC+K AYE
Sbjct: 283 KDGIPSFLANAAGTILTTGKYLNVMRECGHNVQVPASEDSKFISFGSNHHYLECIKAAYE 342

Query: 302 FASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQS 361
           F+S ELLNLIKE+YDL+GKLRSIK YLLLDQGDFLVHFMDIAR+EL K+LD+I+VEKLQS
Sbjct: 343 FSSTELLNLIKEKYDLLGKLRSIKHYLLLDQGDFLVHFMDIARDELAKRLDDISVEKLQS 402

Query: 362 LLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLE 421
           LLD+ALR+TAAAADPCHEDLTC VERSSLLKR+ TLK +EI++ +DS DL++PVSI+GLE
Sbjct: 403 LLDLALRTTAAAADPCHEDLTCCVERSSLLKRLGTLKALEIRSLADSNDLKEPVSISGLE 462

Query: 422 TFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTA 481
           TFSLSYKVQWPLSIVISRKALTKYQ++FR LFHCKHV RQLCGAWQ+HQG RA N  GTA
Sbjct: 463 TFSLSYKVQWPLSIVISRKALTKYQLIFRFLFHCKHVNRQLCGAWQLHQGVRAINMRGTA 522

Query: 482 ISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLR 541
           I RSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQ HDFFLDKCLR
Sbjct: 523 IPRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQFHDFFLDKCLR 582

Query: 542 ECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRS 601
           ECLL LP+LLKKVERLKSLCLQYA+ATQ LISSS+D+PK E PS G  G EK K+ K R 
Sbjct: 583 ECLLLLPELLKKVERLKSLCLQYASATQRLISSSVDIPKSEVPSKGSLGLEKSKQGKSRI 642

Query: 602 LSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVG 658
            S+V K+ I ++TVT+SILKFE+EFN EL SLGPILS+S+QAEP+LTHLAQ +LGVG
Sbjct: 643 PSRVLKLAITNSTVTDSILKFEKEFNAELHSLGPILSNSAQAEPHLTHLAQWILGVG 699

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224112407|ref|XP_002316177.1| tubulin gamma complex-associated protein [Populus trichocarpa] gi|222865217|gb|EEF02348.1| tubulin gamma complex-associated protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449461078|ref|XP_004148270.1| PREDICTED: spindle pole body component 97-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359488832|ref|XP_002273947.2| PREDICTED: gamma-tubulin complex component 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255578011|ref|XP_002529877.1| gamma-tubulin complex component, putative [Ricinus communis] gi|223530653|gb|EEF32527.1| gamma-tubulin complex component, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356560679|ref|XP_003548617.1| PREDICTED: gamma-tubulin complex component 2-like [Glycine max] Back     alignment and taxonomy information
>gi|30686344|ref|NP_850838.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|332005039|gb|AED92422.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18418288|ref|NP_568346.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|13430652|gb|AAK25948.1|AF360238_1 putative spindle pole body protein [Arabidopsis thaliana] gi|14532826|gb|AAK64095.1| putative spindle pole body protein [Arabidopsis thaliana] gi|332005040|gb|AED92423.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357513163|ref|XP_003626870.1| Gamma-tubulin complex component [Medicago truncatula] gi|355520892|gb|AET01346.1| Gamma-tubulin complex component [Medicago truncatula] Back     alignment and taxonomy information
>gi|297807763|ref|XP_002871765.1| hypothetical protein ARALYDRAFT_488606 [Arabidopsis lyrata subsp. lyrata] gi|297317602|gb|EFH48024.1| hypothetical protein ARALYDRAFT_488606 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query661
TAIR|locus:2178930679 AT5G17410 [Arabidopsis thalian 0.862 0.839 0.785 2.2e-264
UNIPROTKB|F1SCV1906 TUBGCP2 "Uncharacterized prote 0.954 0.696 0.384 7.4e-121
UNIPROTKB|J9P5U2704 TUBGCP2 "Uncharacterized prote 0.942 0.884 0.384 5.2e-120
UNIPROTKB|Q5ZKY5895 TUBGCP2 "Uncharacterized prote 0.936 0.691 0.378 2.3e-119
UNIPROTKB|Q9BSJ2902 TUBGCP2 "Gamma-tubulin complex 0.951 0.697 0.385 2.3e-119
RGD|1309597905 Tubgcp2 "tubulin, gamma comple 0.844 0.616 0.405 2.9e-119
MGI|MGI:1921487905 Tubgcp2 "tubulin, gamma comple 0.844 0.616 0.402 4.7e-119
UNIPROTKB|A5D7P5905 TUBGCP2 "Uncharacterized prote 0.954 0.697 0.380 7.7e-119
ZFIN|ZDB-GENE-031118-150882 tubgcp2 "tubulin, gamma comple 0.937 0.702 0.386 1.3e-118
UNIPROTKB|E1BZL5906 TUBGCP2 "Uncharacterized prote 0.937 0.684 0.377 2e-118
TAIR|locus:2178930 AT5G17410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2349 (831.9 bits), Expect = 2.2e-264, Sum P(2) = 2.2e-264
 Identities = 458/583 (78%), Positives = 513/583 (87%)

Query:     2 AIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLA 61
             AIGCYD  VQEL+VIDDLLSALVGIEGRYISIKR     HG +  DS + FQVD SMDLA
Sbjct:    55 AIGCYDTPVQELIVIDDLLSALVGIEGRYISIKR----FHGKE--DS-IAFQVDPSMDLA 107

Query:    62 LQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFR 121
             LQE+AKRIFPLCE ++L  QFVES SQFKNGLVNHAFAA+LRALLLDY+AMVAQLEHQFR
Sbjct:   108 LQELAKRIFPLCEYYLLIDQFVESSSQFKNGLVNHAFAAALRALLLDYQAMVAQLEHQFR 167

Query:   122 LGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSL 181
             LGRLSIQGLWFYCQPM+GSM+A++AVI +AS   F GS VLNLLQSQAKAMAGDN+VRSL
Sbjct:   168 LGRLSIQGLWFYCQPMMGSMRALAAVIQQASTKQFVGSGVLNLLQSQAKAMAGDNSVRSL 227

Query:   182 LEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL 241
             LEKMT+CASNAYL ILERWVYEG+IDDPYGEFFIAE++SL KESL+QD  AKYW QRYSL
Sbjct:   228 LEKMTECASNAYLSILERWVYEGIIDDPYGEFFIAENRSLKKESLSQDSTAKYWSQRYSL 287

Query:   242 KDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYE 301
             KD IP FLANIA  ILTTGKYLNVMRECGH+ QVP SE SKL  FGSNHHYLEC+K A+E
Sbjct:   288 KDTIPGFLANIAATILTTGKYLNVMRECGHNVQVPISERSKLTIFGSNHHYLECIKAAHE 347

Query:   302 FASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQS 361
             FAS EL+NLIK++YDL+G+LRSIK YLLLDQGDFLVHFMDIAREEL K++ EI+VEKLQS
Sbjct:   348 FASIELVNLIKDKYDLVGRLRSIKHYLLLDQGDFLVHFMDIAREELNKKVHEISVEKLQS 407

Query:   362 LLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLE 421
             LLD+ALR+TAAAADP HEDLTC V+R+SLL    T  G+   T S+S+  E P+SITGLE
Sbjct:   408 LLDLALRTTAAAADPRHEDLTCCVDRASLL----TTLGMHKDTDSNSI--EDPMSITGLE 461

Query:   422 TFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTA 481
             TFSLSYKVQWPLSIVIS+KAL+KYQ++FR LFHCKHVERQLCGAWQ+HQG R+ N+ GTA
Sbjct:   462 TFSLSYKVQWPLSIVISKKALSKYQLIFRFLFHCKHVERQLCGAWQIHQGIRSMNSKGTA 521

Query:   482 ISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLR 541
             I RSSLLCRSMLKFI+SLLHYLTFEVLEPNWHVMH+RLQ+ +S+DEVIQHHDFFLDKCLR
Sbjct:   522 ILRSSLLCRSMLKFISSLLHYLTFEVLEPNWHVMHDRLQSTRSVDEVIQHHDFFLDKCLR 581

Query:   542 ECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEP 584
              CLL LPD+LKK+E+LKS+CLQYAAATQWLISSSID+     P
Sbjct:   582 GCLLLLPDVLKKMEKLKSVCLQYAAATQWLISSSIDINSQSHP 624
GO:0000226 "microtubule cytoskeleton organization" evidence=IEA
GO:0000922 "spindle pole" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005815 "microtubule organizing center" evidence=IEA
UNIPROTKB|F1SCV1 TUBGCP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9P5U2 TUBGCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKY5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BSJ2 TUBGCP2 "Gamma-tubulin complex component 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309597 Tubgcp2 "tubulin, gamma complex associated protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1921487 Tubgcp2 "tubulin, gamma complex associated protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7P5 TUBGCP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031118-150 tubgcp2 "tubulin, gamma complex associated protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZL5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020711001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (691 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025404001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (841 aa)
    ••••0.556

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query661
pfam04130528 pfam04130, Spc97_Spc98, Spc97 / Spc98 family 1e-134
>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family Back     alignment and domain information 
 Score =  403 bits (1036), Expect = e-134
 Identities = 177/547 (32%), Positives = 271/547 (49%), Gaps = 39/547 (7%)

Query: 18  DLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFV 77
           DLL AL+G+E  Y              +    +   +   +  +L+ +  RI  L   + 
Sbjct: 1   DLLFALLGLESLYFRYD--------KSSESFKIAPNISGLLSPSLRSLLNRILELGTLYR 52

Query: 78  LTGQFVE--SRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFR-LGRLSIQGLWFYC 134
              +F+E  S S    G V  A AA+LR +L +Y  +VAQLE +    G L++  L    
Sbjct: 53  RLREFIESISSSSSLYGPVLQALAAALREILNEYLQLVAQLESELLSNGTLTLLQLLAEL 112

Query: 135 QPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYL 194
           QP +  ++ ++ ++ +  + +  G  +L+ L  +  +  GD  +R LL ++   AS  YL
Sbjct: 113 QPAILLLRLLAEIVEEILSKSLKGGQLLSSLYERIASQTGDPDLRELLLRLLNAASQPYL 172

Query: 195 GILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFL-ANI 252
            +L RW+  G +DDPYGEFFI E++S   E +  D   +YW +RY+L +D +PSFL   +
Sbjct: 173 QMLSRWLLHGELDDPYGEFFIKENES---EEVLSDDSDEYWEERYTLREDMLPSFLPKEL 229

Query: 253 AGKILTTGKYLNVMRECGHSAQVP------------TSENSKLLSFGSNHHYLECVKVAY 300
           A KIL  GK LN +REC  S  +                  KL S          +  AY
Sbjct: 230 ARKILEIGKSLNFLRECCKSHPLAKDQSLALSLREALVSLLKLFSSLDTSALELLIDSAY 289

Query: 301 EFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQ 360
             AS  LL+L+ E YDL+G L+++K Y LL +GDF+  F++   +EL K  + ++   LQ
Sbjct: 290 LEASKSLLDLLLEEYDLLGHLQALKDYFLLGRGDFISSFLESLFDELDKPANSLSDHALQ 349

Query: 361 SLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGL 420
           SLL  ALRS+++  DP   DL     + S          V     S          ++GL
Sbjct: 350 SLLQEALRSSSSDDDPASSDLDELETKKSDSSETLNRLDVSSLELSS--------GLSGL 401

Query: 421 ETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFN---A 477
           +  +L YKV WPLS++++ +AL KYQ +FR L   K  E  L   W+     R       
Sbjct: 402 DALTLDYKVPWPLSLILTPEALKKYQRIFRFLLRLKRAEYLLNKLWKELNKRRRLGSTRR 461

Query: 478 SGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLD 537
           +   + +  LL   ML F+NSL +Y+  +V+E NW  +  +LQ AK +DE+I  H+ +LD
Sbjct: 462 NEPLLRKIWLLRFQMLHFVNSLQYYIQVDVIESNWQKLQEQLQKAKDLDELIAAHEDYLD 521

Query: 538 KCLRECL 544
             L  C 
Sbjct: 522 SILSGCF 528

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 661
KOG2001734 consensus Gamma-tubulin complex, DGRIP84/SPC97 com 100.0
KOG2065679 consensus Gamma-tubulin ring complex protein [Cyto 100.0
PF04130542 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00 100.0
KOG2000879 consensus Gamma-tubulin complex, DGRIP91/SPC98 com 100.0
KOG43441121 consensus Uncharacterized conserved protein [Funct 99.97
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=8.9e-101  Score=795.79  Aligned_cols=623  Identities=44%  Similarity=0.729  Sum_probs=539.3

Q ss_pred             CCCCCCccchHHHHHHHHHHHhcCCCCCceeeecccCCCCCC-CCCCCccceEecCCCCHHHHHHHHHHHHHHhHHHHHH
Q 006106            2 AIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGN-DTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTG   80 (661)
Q Consensus         2 ~~~~~~~~~~E~~lv~dlL~~L~G~~g~~~~~~~~~~~~~~~-~~~~~~~~f~i~~~~~~sl~~ll~~il~~g~~~~~l~   80 (661)
                      ++|.+|.+.||..+++||+++|.|++|.|+++..-.  .+.. ..-..+..|.|.|+.+-+++.++++++|+|.+|..++
T Consensus        84 ~is~~~lp~QE~~li~dLl~af~Gv~~ryV~~Q~~~--~s~~~~~~~~~~~F~v~~~fd~~ir~la~eilpl~~yy~~v~  161 (734)
T KOG2001|consen   84 EISDMPLPSQESKLIDDLLYAFVGVEGRYVSPQYMI--ISEAYEKWIDSIFFMVLPRFDLAIRELAEEILPLASYYLLVQ  161 (734)
T ss_pred             CcccCCchhHHHHHHHHHHHHHcCCCcceeecchhh--hhhhhhhhccCcceeeccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999986511  1110 0001357899999999999999999999999999999


Q ss_pred             HHhhhhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHhhhhhHHHHHHHHHHHHHhhcCCCchhh
Q 006106           81 QFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSA  160 (661)
Q Consensus        81 ~fv~~~~~~~~g~~~~Al~~~l~~~L~~y~~~i~~lE~~~~~~~lsL~~l~~~~~~~~~~l~~L~~i~~~~~~~~~~g~~  160 (661)
                      +||+..+....|.|.+|+|+|+++.|.+|+..|.++|++.+.+.+|+++||++++|++..|+.++..++.+..+.++||.
T Consensus       162 ~fie~~s~f~~G~vn~alaaAlr~ll~dyy~li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l~~~~~~~~~~~~~gg~  241 (734)
T KOG2001|consen  162 DFIEETSFFEYGQVNHALAAALRELLYDYYELISQLEQELRTNRLSLQDLWFYMQPMMRSMRRLAVAATTTVKKVCKGGA  241 (734)
T ss_pred             HHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhhccccCchH
Confidence            99999888899999999999999999999999999999999999999999999999999999998888888778999999


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceEcCCCCcceeeeCCccccccccccchhhhhccccc
Q 006106          161 VLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYS  240 (661)
Q Consensus       161 lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~D~~~EFfI~~~~~~~~~~~~~~~~~~~W~~~y~  240 (661)
                      +|+.|++++..+.||+.++.++.++++.+++||++|+..|+..|.++|||+||||.++ ...++.+++|+.++||+++|+
T Consensus       242 vls~l~~~~~~~~Gd~~a~~ll~~l~r~as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~-~~~k~~l~ed~~d~YW~~RY~  320 (734)
T KOG2001|consen  242 VLSLLQSSIKENLGDRSARMLLKKLLRNASQPYCTMLEEWIYQGIINDPYQEFMIYDN-LITKEDLPEDYTDKYWDQRYT  320 (734)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchHHHHHHHHHhcccccCchHhHhhhhc-chhhhcCchhhhHHHHHHhhe
Confidence            9999999998899999999999999999999999999999999999999999999999 677788889999999999999


Q ss_pred             c-ccCCCcchHHHHHHHHHhhhHHHHHHHhcCCCCCCCccccccc-ccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHH
Q 006106          241 L-KDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLL-SFGSNHHYLECVKVAYEFASGELLNLIKERYDLM  318 (661)
Q Consensus       241 l-~~~lP~Fl~~~a~~Il~~GK~l~~Lr~~~~~~~~p~~e~~~~~-~f~~~~~~~~~I~~~~~~~s~~l~~ll~~~~~L~  318 (661)
                      | +|.+|.|+.+.|+|||.||||+|++|+|+..++.|...+.... ....+..+.+.|+++|..||..++++++++++|.
T Consensus       321 ir~dqiP~fL~~~adkIL~tGKYLNVvReC~~~v~~p~~~n~~~~~~~~~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~  400 (734)
T KOG2001|consen  321 IRKDQIPGFLLSEADKILRTGKYLNVVRECGKIVTIPQSSNEINDPADLMESNHEEYIKKAYEFANEILLKLLFEEYDLV  400 (734)
T ss_pred             echhhcchHHHHHHHHHHHhhhHHHHHHHhCccCCCCcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            9 7899999999999999999999999999999887765432111 1222478899999999999999999999999999


Q ss_pred             HHHHHHHHhHhcCCcchHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-hhhcccCCCCCccceeeccccHHHHHHhh
Q 006106          319 GKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALR-STAAAADPCHEDLTCSVERSSLLKRMATL  397 (661)
Q Consensus       319 ~hL~~l~~~fLL~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~~~l~~al~-~s~~~~d~~~~~l~~~l~~~~l~~~l~~~  397 (661)
                      .||+.+|+||||.+|||+.+|+|.+.++|.|+.+.+++.+|+++|+.|++ .+.+..||++++++|.+.+.+++.++..+
T Consensus       401 ~hLrslK~YfLldQgdF~~~Fld~~~eEL~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~ql~~~  480 (734)
T KOG2001|consen  401 GHLRSLKHYFLLDQGDFFVTFLDKAEEELTKNVENISPEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQLSHI  480 (734)
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHHHhcchhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999 77788999999999999999999998876


Q ss_pred             hccccccCCCCCCCCCC---CCCcceeEEEeeeecCCCceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 006106          398 KGVEIKTSSDSVDLEQP---VSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARA  474 (661)
Q Consensus       398 ~~~~~~~~~~~~~~~~~---~~~~~~d~l~L~y~v~wPL~lilt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~~~r~  474 (661)
                      ..++... .+++...+|   ..+.|+++++++|+|||||++||++++|.|||.|||++|.|||++++|+.+|..++..|.
T Consensus       481 l~ie~~e-~~ans~~dP~~~l~lsGlE~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~~r~  559 (734)
T KOG2001|consen  481 LAIEPEE-ESANSQADPLEHLDLSGLEAFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSKARS  559 (734)
T ss_pred             HhcCccc-cccccccCcchhccccchhhheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            5544211 111112334   568999999999999999999999999999999999999999999999999999988776


Q ss_pred             cCCch-hhHHhHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCCh-HHHH
Q 006106          475 FNASG-TAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLP-DLLK  552 (661)
Q Consensus       475 ~~~~~-~~~~~~~~lr~~m~~fv~~l~~Y~~~~VIe~~~~~~~~~l~~~~~~d~l~~~H~~fL~~i~~~~~L~~~-~l~~  552 (661)
                      .+..+ .+.+.++.+|++|++||+++.+|++.+||||+|+.|+..+++++++|+++..|+.||+.|++.|+|+.+ .+++
T Consensus       560 ~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~~~llk  639 (734)
T KOG2001|consen  560 SNTKGAQIVRASFLLRQRMLNFIQSIEYYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLSPLLLK  639 (734)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCChHHHHH
Confidence            66554 345778899999999999999999999999999999999999999999999999999999999999986 7899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 006106          553 KVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQS  632 (661)
Q Consensus       553 ~l~~il~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~  632 (661)
                      .+.++..+|..||..++.+.+..   .-++..+..+ .|.+ ..  .+.+.+.+    --+.+.+-+.+++..|++|++.
T Consensus       640 ~~~kL~~vCl~f~~~~q~~~~~~---~~~~~~~~~~-~~~~-d~--~~k~~~t~----li~~leei~~~~~~~f~~~l~~  708 (734)
T KOG2001|consen  640 SFSKLYKVCLMFCSFTQKLTQSD---PTDEEKNSVG-HPQF-DE--GRKEDDTL----LISKLEEIISNADKNFRDCLKN  708 (734)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc---chhhhhcccc-ccch-hh--hhhhhhHH----HHHHHHHHHHHhHHHHHHHHHH
Confidence            99999999999999999987421   0011000001 0111 00  00011111    0223345567799999999999


Q ss_pred             HHHHhcc
Q 006106          633 LGPILSS  639 (661)
Q Consensus       633 l~~~l~~  639 (661)
                      |+..|++
T Consensus       709 L~~rlsk  715 (734)
T KOG2001|consen  709 LLQRLSK  715 (734)
T ss_pred             HHHHccc
Confidence            9999994

>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton] Back     alignment and domain information
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin Back     alignment and domain information
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton] Back     alignment and domain information
>KOG4344 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query661
3rip_A677 Crystal Structure Of Human Gamma-Tubulin Complex Pr 3e-19
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (Gcp4) Length = 677 Back     alignment and structure 
Iteration: 1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 117/521 (22%), Positives = 209/521 (40%), Gaps = 63/521 (12%)
Query: 91  NGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG--RLSIQGLWFYCQPMLGSMQAVSAVI 148
           +G+   AF   L ++L  Y   +  LE +F LG   LSI  + ++         +V  V+
Sbjct: 82  HGIYLRAFCTGLDSVLQPYRQALLDLEQEF-LGDPHLSISHVNYFLDQFQLLFPSVMVVV 140
Query: 149 HKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 208
            +  +    G  +L  +   +    G   VRS LEK+           L  W+  G++ D
Sbjct: 141 EQIKSQKIHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLD 198
Query: 209 PYGEFFIAEDKSLLKESLTQDYD----------AKYWRQ------------------RYS 240
            + EFFI +  S    S   + D           K  R+                  ++S
Sbjct: 199 QHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFS 258
Query: 241 LK-DGIPSFLA-NIAGKILTTGKYLNVMRECGHSAQVPTSENSKLL-----SFGSNHHYL 293
           L+ + +PS++   +A KIL  G+ + +      +  V  +    +L     +F +  H L
Sbjct: 259 LRVEILPSYIPVRVAEKILFVGESVQMFE----NQNVNLTRKGSILKNQEDTFAAELHRL 314
Query: 294 ------------ECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 341
                       + V       +  L  L+ E  DL+G+L+ IK + LL +G+    F+D
Sbjct: 315 KQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFID 374
Query: 342 IAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVE 401
            A+  L      +T   +      +        D     L  ++E      + AT     
Sbjct: 375 TAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKDAT--QAR 432
Query: 402 IKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQ 461
              S ++   E P S  G     LSYKVQWPL I+ +   L KY +VF+ L   + V+ +
Sbjct: 433 EGPSRETSPREAPAS--GWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAE 490
Query: 462 LCGAWQVHQGARAFNASGTAISRSSLLCRSMLKF-INSLLHYLTFEVLEPNWHVMHNRLQ 520
           L   W +    +   ++ T   +  L  R+ + F +++L +YL  +VLE  +  + +++ 
Sbjct: 491 LQHCWALQMQRKHLKSNQTDAIKWRL--RNHMAFLVDNLQYYLQVDVLESQFSQLLHQIN 548
Query: 521 TAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 561
           + +  + +   HD FL   L +  + L  +   +  +  LC
Sbjct: 549 STRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLC 589

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query661
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 1e-102
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677 Back     alignment and structure
 Score =  325 bits (833), Expect = e-102
 Identities = 131/703 (18%), Positives = 241/703 (34%), Gaps = 119/703 (16%)

Query: 15  VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVD---ASMDLALQEMAKRIFP 71
           +I +LL AL G  G                T++     QV      +  +   +  R+  
Sbjct: 1   MIHELLLALSGYPGSIF-------------TWNKRSGLQVSQDFPFLHPSETSVLNRLCR 47

Query: 72  LCESFVLTGQFVESRSQF---------------KNGLVNHAFAASLRALLLDYEAMVAQL 116
           L   ++   +F+E  +                  +G+   AF   L ++L  Y   +  L
Sbjct: 48  LGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDL 107

Query: 117 EHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGD 175
           E +F     LSI  + ++         +V  V+ +  +    G  +L  +   +    G 
Sbjct: 108 EQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHS--CGGL 165

Query: 176 NTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAK-- 233
             VRS LEK+           L  W+  G++ D + EFFI +  S    S   + D +  
Sbjct: 166 PPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL 225

Query: 234 --------------------------YWRQRYSL-KDGIPSFL-ANIAGKILTTGKYLNV 265
                                        +++SL  + +PS++   +A KIL  G+ + +
Sbjct: 226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQM 285

Query: 266 MRECGHSAQVP-------------TSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIK 312
                 +                      K     S   + + V       +  L  L+ 
Sbjct: 286 FENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMV 345

Query: 313 ERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAA 372
           E  DL+G+L+ IK + LL +G+    F+D A+  L      +T   +      +      
Sbjct: 346 EESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLL 405

Query: 373 AADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP 432
             D     L  ++E      + AT    + +         +    +G     LSYKVQWP
Sbjct: 406 DDDNLLPLLHLTIEYHGKEHKDAT----QAREGPSRETSPREAPASGWAALGLSYKVQWP 461

Query: 433 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSM 492
           L I+ +   L KY +VF+ L   + V+ +L   W +    +    S    +    L   M
Sbjct: 462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLK-SNQTDAIKWRLRNHM 520

Query: 493 LKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLK 552
              +++L +YL  +VLE  +  + +++ + +  + +   HD FL   L +  + L  +  
Sbjct: 521 AFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFH 580

Query: 553 KVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRD 612
            +  +  LC  + +     +                                       D
Sbjct: 581 CLNEILDLCHSFCSLVSQNLGPL------------------------------------D 604

Query: 613 ATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVL 655
                 +    + F+ +   L  ILSS    +   + LAQL+L
Sbjct: 605 ERGAAQLSILVKGFSRQSSLLFKILSSVRNHQ-INSDLAQLLL 646
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query661
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 100.0
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.4e-92  Score=803.57  Aligned_cols=589  Identities=22%  Similarity=0.362  Sum_probs=481.3

Q ss_pred             HHHHHHHHhcCCCCCceeeecccCCCCCCCCCCCccceEecC---CCCHHHHHHHHHHHHHHhHHHHHHHHhhhhcCC--
Q 006106           15 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLALQEMAKRIFPLCESFVLTGQFVESRSQF--   89 (661)
Q Consensus        15 lv~dlL~~L~G~~g~~~~~~~~~~~~~~~~~~~~~~~f~i~~---~~~~sl~~ll~~il~~g~~~~~l~~fv~~~~~~--   89 (661)
                      ||+|||++|+|++|.+|++++.             ++|+|++   .+++|+++++++++++|.+|++|++|++.....  
T Consensus         1 Ml~dlL~~L~G~~g~~i~~~~~-------------~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~   67 (677)
T 3rip_A            1 MIHELLLALSGYPGSIFTWNKR-------------SGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQ   67 (677)
T ss_dssp             CHHHHHHHHTTCCCSSSEEETT-------------TEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred             ChHHHHHHHcCCCCCceEecCC-------------CceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            6899999999999999998761             4788988   567999999999999999999999999964321  


Q ss_pred             -------------CcChHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCcHHHHHHhhhhhHHHHHHHHHHHHHhhcCC
Q 006106           90 -------------KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN  155 (661)
Q Consensus        90 -------------~~g~~~~Al~~~l~~~L~~y~~~i~~lE~~~~~-~~lsL~~l~~~~~~~~~~l~~L~~i~~~~~~~~  155 (661)
                                   ..|+|.+|||++|+++|++|+..|+++|+++.. +.+||+.++..++|+...|+.|++|+.++..+.
T Consensus        68 ~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~  147 (677)
T 3rip_A           68 QQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQK  147 (677)
T ss_dssp             -----------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                         169999999999999999999999999999854 579999999999999999999999999887667


Q ss_pred             CchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceEcCCCCcceeeeCCccccccc---------
Q 006106          156 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESL---------  226 (661)
Q Consensus       156 ~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~D~~~EFfI~~~~~~~~~~~---------  226 (661)
                      ++||+||+.||+.+  .+|||.+++++.+|+..|++||++||..||.+|+|.|||+||||++++..++...         
T Consensus       148 ~~G~~lL~~L~~~~--~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~  225 (677)
T 3rip_A          148 IHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL  225 (677)
T ss_dssp             CCTHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC-----------------
T ss_pred             CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEecccccccccccccccccc
Confidence            89999999999987  4999999999999999999999999999999999999999999998865332100         


Q ss_pred             -----c--------------ccchhhhhcccccc-ccCCCcchHH-HHHHHHHhhhHHHHHHHhcCCCC-----CCCccc
Q 006106          227 -----T--------------QDYDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQ-----VPTSEN  280 (661)
Q Consensus       227 -----~--------------~~~~~~~W~~~y~l-~~~lP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~~~-----~p~~e~  280 (661)
                           .              ++....+|..+|+| .+++|+|+++ +|+|||.|||++++||+++....     ++..+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~  305 (677)
T 3rip_A          226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQED  305 (677)
T ss_dssp             ---------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHH
T ss_pred             ccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHH
Confidence                 0              00012479999999 7889999987 99999999999999999764311     000000


Q ss_pred             c------cccccC--CchhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHhcCCcchHHHHHHHHHHHHhcccc
Q 006106          281 S------KLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLD  352 (661)
Q Consensus       281 ~------~~~~f~--~~~~~~~~I~~~~~~~s~~l~~ll~~~~~L~~hL~~l~~~fLL~~Gdf~~~f~~~~~~~L~~~~~  352 (661)
                      .      .+...+  +...|...|+++|..+|+.|+++++++++|.+||+++|+||||++|||+..|++.++++|.+|+.
T Consensus       306 ~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~  385 (677)
T 3rip_A          306 TFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPT  385 (677)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Confidence            0      011110  12467889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhhcccCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCcceeEEEeeeecCCC
Q 006106          353 EITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP  432 (661)
Q Consensus       353 ~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~L~y~v~wP  432 (661)
                      +++..+|+..|+.|++.+....++..+.+.+.+........ ..-...  ...+ ......+.+..|||+|+|+|+||||
T Consensus       386 ~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~~~~~~~-~~~~~~--~~~~-~~~~~~~~~~~~~d~l~L~Y~v~~P  461 (677)
T 3rip_A          386 AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHK-DATQAR--EGPS-RETSPREAPASGWAALGLSYKVQWP  461 (677)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECCCC---------------------------CCTTTTEEEEECCCTT
T ss_pred             ccCHHHHHHHHHHHHHHccCCchhhHhcceEEeeccccccc-cccccc--cccc-cccccccCCccchheEEEEEeCCCh
Confidence            99999999999999998766566666667666654321100 000000  0000 0011223457899999999999999


Q ss_pred             ceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccccH
Q 006106          433 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNW  512 (661)
Q Consensus       433 L~lilt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~~~~~~~~~lr~~m~~fv~~l~~Y~~~~VIe~~~  512 (661)
                      |++|||+++|.+|++||+|||++||+++.|+++|+.++..+.........++ +.+|++|+|||+++++|++++||+++|
T Consensus       462 L~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w  540 (677)
T 3rip_A          462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQF  540 (677)
T ss_dssp             GGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987754433222233444 899999999999999999999999999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChh
Q 006106          513 HVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSE  592 (661)
Q Consensus       513 ~~~~~~l~~~~~~d~l~~~H~~fL~~i~~~~~L~~~~l~~~l~~il~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (661)
                      .+|++++++++|+|+|+++|++||++|+++|||+.+++.++|.+|+++|++||..+++..      .. .          
T Consensus       541 ~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~~~~------~~-~----------  603 (677)
T 3rip_A          541 SQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNL------GP-L----------  603 (677)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCC---------C----------
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhhc------cc-c----------
Confidence            999999999999999999999999999999999999999999999999999999986410      00 0          


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhcccccccchHHHHHHHHhccCCC
Q 006106          593 KFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFD  660 (661)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~l~~~~~~~~~~~~l~~ll~rld~n  660 (661)
                                         .+...+++++++++|++++..|+++|++++ +.+..++|++||+|||||
T Consensus       604 -------------------~~~~~~~~~~l~~~F~~~~~~L~~~l~~l~-~~~~~~~l~~Ll~rLd~N  651 (677)
T 3rip_A          604 -------------------DERGAAQLSILVKGFSRQSSLLFKILSSVR-NHQINSDLAQLLLRLDYN  651 (677)
T ss_dssp             -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSCCHHHHHHHHHHHHH
T ss_pred             -------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHHHHhCch
Confidence                               111246799999999999999999999984 456779999999999998

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00