Citrus Sinensis ID: 006149
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 659 | 2.2.26 [Sep-21-2011] | |||||||
| A5PK19 | 699 | Methyltransferase-like pr | yes | no | 0.790 | 0.745 | 0.332 | 5e-69 | |
| Q91YR5 | 698 | Methyltransferase-like pr | yes | no | 0.787 | 0.743 | 0.327 | 3e-68 | |
| Q8N6R0 | 699 | Methyltransferase-like pr | yes | no | 0.793 | 0.748 | 0.321 | 2e-66 | |
| A5WVX1 | 690 | Methyltransferase-like pr | yes | no | 0.866 | 0.827 | 0.299 | 2e-62 | |
| Q29LW1 | 673 | Methyltransferase-like pr | yes | no | 0.767 | 0.751 | 0.302 | 2e-49 | |
| Q9VIK9 | 673 | Methyltransferase-like pr | yes | no | 0.764 | 0.748 | 0.296 | 5e-49 | |
| Q6NTR1 | 693 | Methyltransferase-like pr | N/A | no | 0.288 | 0.274 | 0.417 | 3e-33 | |
| Q10711 | 883 | Endothelin-converting enz | no | no | 0.200 | 0.149 | 0.359 | 5e-15 | |
| O60344 | 883 | Endothelin-converting enz | no | no | 0.174 | 0.130 | 0.384 | 6e-15 | |
| Q80Z60 | 881 | Endothelin-converting enz | no | no | 0.194 | 0.145 | 0.366 | 1e-14 |
| >sp|A5PK19|MET13_BOVIN Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 263 bits (671), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 196/590 (33%), Positives = 293/590 (49%), Gaps = 69/590 (11%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVVGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT M+F D +F V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 144 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++HVL F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADK--ENSSVVLQVTSSFDHSSLDCNKNQAFGIHE 252
H + Q +EP SL F + K + LQ+ F+ + + K E
Sbjct: 184 HQVASSQDQLLEAEPRFSLPVFAFIMTKFRPVTGSALQI---FELCAQEQGKPVRLESAE 240
Query: 253 ALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAV- 311
L + R++Y+ LY K + ++S +L G G+ ++ V
Sbjct: 241 QLAEAVRERQQYAWLCSQLYR--------KAGLGSVS----LDLCNGDTGEPRYTLHVVD 288
Query: 312 ---LLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSH 368
+ +R+N + +FI+P+ R EWLF EEG+ + S+ RLI V L
Sbjct: 289 SPTVKPSRDN------HFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRGQ 342
Query: 369 ASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVED 428
MD IQ +LS V +LAP Q+PF+ G I R V HQA S L+G ++ED
Sbjct: 343 QYEGMDSIQAELSARVMELAPAGMPAQLQVPFLSVGGDIGVRIVQHQACSPLSGDYVIED 402
Query: 429 LVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTD---VETERKKA 485
+ + D + FRRL+F + +VQSEA L++D SHR + +K
Sbjct: 403 V--QGDDKRY----------FRRLIFLSNRNVVQSEARLLQD-VSHRAQKKRKKDRKKHR 449
Query: 486 SSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKA 545
+ + Q +S D YL +H +I+G L+ + + +
Sbjct: 450 PADTPEDLPAAQGQSIDK--------SYLCCEHHKAMIAGLALLKN---PELLLETPLAL 498
Query: 546 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
+V+GLG G LP+F+H+ P I AVE+D +ML +A +FGF+Q +KV
Sbjct: 499 LVVGLGGGSLPLFIHDHFPKSCIHAVEIDPSMLEVATQWFGFSQSDRMKV 548
|
Bos taurus (taxid: 9913) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q91YR5|MET13_MOUSE Methyltransferase-like protein 13 OS=Mus musculus GN=Mettl13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 194/592 (32%), Positives = 298/592 (50%), Gaps = 73/592 (12%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L + L I P ++LV GCGNS LS
Sbjct: 10 EFGSADYWEKFFQQRG-KTAFEWYGTYLELCEVLHKYI-----KPKEKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT ++F D TF V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNGSRRPHMSFLKMDMTQLEFPDATFQVVLDKGT 123
Query: 144 LDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E E+ + ++ L+EV R+L+ GG+++C++LA++H+L F R GW +
Sbjct: 124 LDAVLTDEEEVTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRA 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADK--ENSSVVLQVTSSFDHSSLDCNKNQAFGIHE 252
H + + S +EP SL F V K LQ+ C + Q +
Sbjct: 184 HQVASSQDRVSEAEPRFSLPVFAFVMTKFRPVPGSALQIFEL-------CTQEQGKPVR- 235
Query: 253 ALESENQ-----TRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFS 307
LES +Q R+Y Y+ QL K + ++S +L G G+ ++
Sbjct: 236 -LESADQLAEAVRERQY-------YAWLCSQLRRKAGLGSVS----LDLCSGDTGEPRYT 283
Query: 308 YRAV----LLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVL 363
V + +R+N + +FI+P+ R EWLF EEG+ + S+ RL+ V
Sbjct: 284 LHVVDNPAVKPSRDN------HFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLVTVA 337
Query: 364 LDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGP 423
L A M+ IQ +LS V +LAP Q+PF+ G I R V HQ S+L+G
Sbjct: 338 LHRGQRYAGMESIQAELSARVMELAPAGLPPQQQVPFLSVGGDIGVRTVQHQDHSALSGD 397
Query: 424 IIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERK 483
++ED+ E+ W FRRL+F + +VQSEA L++D +SHR + ++
Sbjct: 398 YVIEDVQGEDR-------W-----YFRRLIFLSNRNVVQSEARLLKD-TSHRAQKKRKKD 444
Query: 484 KASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSV 543
+ + S ++ YL +H +++G L+ + + +
Sbjct: 445 RKKQRPADTSEDFPPAPGQSIDK-----SYLCCEHHKAMVAGLALLRN---PELLLETPL 496
Query: 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
+V+GLG G LP+F+H+ P I+AVE+D TML +A +FGF+Q +KV
Sbjct: 497 TLLVVGLGGGSLPLFVHDHFPKSRIDAVEIDPTMLEVATQWFGFSQSDRMKV 548
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8N6R0|MET13_HUMAN Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 189/587 (32%), Positives = 289/587 (49%), Gaps = 64/587 (10%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M N R M + MDMT M+F D +F V+LDKG
Sbjct: 64 EQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 144 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADK--ENSSVVLQVTSSFDHSSLDCNKNQAFGIHE 252
H + Q +EP SL F + K LQ+ F+ + + K E
Sbjct: 184 HQVANSQDQVLEAEPQFSLPVFAFIMTKFRPVPGSALQI---FELCAQEQRKPVRLESAE 240
Query: 253 ALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAV- 311
L Q R++Y+ QL K + ++S +L G G+ ++ V
Sbjct: 241 RLAEAVQERQQYAWLCS--------QLRRKARLGSVS----LDLCDGDTGEPRYTLHVVD 288
Query: 312 ---LLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSH 368
+ +R+N + +FI+P+ R EWLF +EG+ + S+ RLI V L
Sbjct: 289 SPTVKPSRDN------HFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQ 342
Query: 369 ASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVED 428
SMD IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED
Sbjct: 343 QYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIED 402
Query: 429 LVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSS 488
+ + D + FRRL+F + +VQSEA L++D S + +K
Sbjct: 403 V--QGDDKRY----------FRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRKKQRP 450
Query: 489 SKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVI 548
+ ++ + + YL +H +I+G L+ + + + +V+
Sbjct: 451 ADAE-------DLPAAPGQSIDKSYLCCEHHKAMIAGLALLRN---PELLLEIPLALLVV 500
Query: 549 GLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
GLG G LP+F+H+ P I+AVE+D +ML +A +FGF+Q +KV
Sbjct: 501 GLGGGSLPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFSQSDRMKV 547
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A5WVX1|MET13_DANRE Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 190/635 (29%), Positives = 314/635 (49%), Gaps = 64/635 (10%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F+S + W++FF RG +FEWY ++ L L I P ++LV GC
Sbjct: 4 LPRTAEEFSSADYWERFFRKRG-EKAFEWYGDYNSLCGVLHKYI-----KPRDKVLVVGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDV 137
GNS LSE LYD G+ +TN+D S+ V+S M +RN R D+ ++ +D T F +F V
Sbjct: 58 GNSELSEQLYDVGYRQLTNIDISETVVSHMNQRNAERRPDLSFQQLDATQTGFESGSFQV 117
Query: 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWK 197
LDKG LDA+ E G L + L+EV R+L GG++VC+TLA+ HV+ L F GW
Sbjct: 118 TLDKGTLDAMASEEDG-ALAGRMLAEVGRVLAVGGRYVCITLAQEHVIKLAVEHFVKGWA 176
Query: 198 MSVHAIP----QKSSSEPSLQTFMVVADKENSS---VVLQVTSSFDHSSLDCNKNQAFGI 250
+ VH + ++S S +L F++V K + VL++ D +
Sbjct: 177 VRVHCLTGQQNEESDSSFALPVFVLVCTKFRQAPPFAVLELCQGEDGAP------ARLAS 230
Query: 251 HEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRA 310
E L S + R+ Y+ +L+ L+ G + +P G + + +
Sbjct: 231 VEELLSAVKERQAYNL---MLHKLKG------GTDSSSTPSLTLCHAASGRPRYTLTIQD 281
Query: 311 VLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHAS 370
A+ P + +FIVP+ R +WL+ S EG+ + S+K RL++V +
Sbjct: 282 GPPSAKT---PRSNHFAIFIVPQGRESDWLYGSAEGRAQLASSAKFRRLVIVAMHRDQEY 338
Query: 371 ASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLV 430
M +Q +LSP+V +LAP Q+PF+ G + R V+ + S+LTG VED+
Sbjct: 339 EDMQAVQSELSPVVMELAPPGMPANQQVPFLSVGGDLGWREVIGRGLSALTGEYSVEDVR 398
Query: 431 YENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSK 490
E+ +RRL+F LVQSE+ L ++ + +KKA +
Sbjct: 399 GED------------GYLYRRLIFMNNSQLVQSESRLQSAAAASSASKKKNKKKAKQPAS 446
Query: 491 SKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGL 550
+ G + RS D G+L ++H +++G ++ ++++ + + V +++GL
Sbjct: 447 T---GAKDRSVD--------RGFLCCTHHEVMVAGLAMLG--MDAINNKDQPVSVLLVGL 493
Query: 551 GAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV-----FNHLFCLQLE 605
G G LP F+ + +P +E VELD +L++A+ +FGF D LKV +H+ L+ E
Sbjct: 494 GGGGLPQFVRDFVPCARVEVVELDPVVLDVAQTWFGFQIDDRLKVTLGDGLDHITTLESE 553
Query: 606 ED--VNLVLFGLSSESCIKDNSFPEAAVQLGKLVK 638
+ ++++F + S+ S P A L+K
Sbjct: 554 GERYFDVIMFDVDSKDTTLGMSCPPPAFVETSLLK 588
|
Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q29LW1|MTE13_DROPS Methyltransferase-like protein 13 OS=Drosophila pseudoobscura pseudoobscura GN=GA15401 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 179/591 (30%), Positives = 267/591 (45%), Gaps = 85/591 (14%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F + W++FF RG +FEWY E+ L D + I P +IL+ GC
Sbjct: 4 LPKTREEFAQTDYWNEFFKKRG-EKAFEWYGEYLDLCDHIHKYI-----KPVDKILMLGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDV 137
GNS+LS +YD+ + ITN+D S V + ML +N R R DM++ MD T+M F DE+F V
Sbjct: 58 GNSKLSMDMYDSEYRDITNIDISPVAVKKMLEQNARTRPDMKFLQMDATAMTFPDESFSV 117
Query: 138 ILDKGGLDALM---EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL---FPK 191
LDKG LDAL PE + N Y E+ R +++GG++ C++L + H+L L P+
Sbjct: 118 ALDKGTLDALFVDDAPETKAVVEN-YFKEILRTMRNGGRYFCVSLLQEHILNFLVEFLPR 176
Query: 192 ----FRFGWKMSVHAIPQKSSSEPSLQ--TFMVVADKENSSVVLQVTSSFDHSSLDCNKN 245
R + V ++ +++ +++ F+V+A K S + L +K
Sbjct: 177 HNCMLRIVHCLGVEQANKEKNADDAMKMPVFVVIATKFKS-----LPMPILEFGLGNDKM 231
Query: 246 QAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGC-RFELILGGEGDF 304
Q F E S S+ + S++ L G ++ G L L +
Sbjct: 232 QRFT-------------ESSELSNAVRSVQKAALVFNGLARSSIAGHDEVTLDLYRPSEN 278
Query: 305 CFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLL 364
Y +LD G Y FIVP+ R EWLF + G+ + S+K RL +V L
Sbjct: 279 TPRYSIYILDQAAARGLNKY--AAFIVPQGREIEWLFGTPSGRKKLQASAKFQRLAVVTL 336
Query: 365 DTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPI 424
+++E+Q +L V LAP QIP++ G + R + S ++G
Sbjct: 337 HRDQVYNTLEEVQAELGDTVFSLAP--HGHIKQIPYLSLGSDVGKRETLISGFSKISGEF 394
Query: 425 IVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKK 484
+E++ + RRL+F Q +VQSEAL V+T + K
Sbjct: 395 RIEEV-------------EAGGKTLRRLIFLSNQFVVQSEAL-----------VKTIKIK 430
Query: 485 ASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVK 544
K GYLA +H+ + G L ++ V K V
Sbjct: 431 GKKERKKID-----------------FGYLACQHHLYMSVGVQLATTLQNPKKDVQKDV- 472
Query: 545 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
+VIGLG G L FLH +P I AVE+D ML +AE YF QDK V
Sbjct: 473 -LVIGLGGGGLCSFLHAALPQSRITAVEIDPIMLEVAEQYFELKQDKRFHV 522
|
Drosophila pseudoobscura pseudoobscura (taxid: 46245) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9VIK9|MET13_DROME Methyltransferase-like protein 13 OS=Drosophila melanogaster GN=CG2614 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 176/593 (29%), Positives = 272/593 (45%), Gaps = 89/593 (15%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F + W++FF RG +FEWY E+ +L D + I P +IL+ GC
Sbjct: 4 LPKTREEFAQTDYWNEFFKKRG-EKAFEWYGEYLELCDQIHKYI-----KPADRILMLGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDV 137
GNS+LS +YD GF ITN+D S + + ML N + R +M++ MD T+M F DE+F V
Sbjct: 58 GNSKLSMDMYDTGFRDITNIDISPIAVKKMLELNAKSRPEMKFLQMDATAMTFPDESFSV 117
Query: 138 ILDKGGLDALM---EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL---FPK 191
LDKG LDAL EPE + N Y E+ R +++GG++V ++L + H+L L PK
Sbjct: 118 SLDKGTLDALFADDEPETRAVVEN-YFKEILRTMRNGGRYVGISLLQEHILNFLLDFLPK 176
Query: 192 FRFGWKMSVHAIPQKSSSEP-------SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNK 244
++ VH + + +++ +L F+VVA K S + + F + +K
Sbjct: 177 HNCMLRI-VHCLGVEQANKEKNADDALTLPVFVVVATKFKSLPMPVLEFGFGN-----DK 230
Query: 245 NQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMK-NLSPGCRFELILGGEGD 303
Q F L S + S++ L G + N++ + L +
Sbjct: 231 MQRFTTVSELNSA-------------VSSVQKAALVCNGLARSNIAGHNEVIMDLHRPSE 277
Query: 304 FCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVL 363
Y +LD G Y FIVP+ R EW+FS+ G+ + +S+ RL +V
Sbjct: 278 QTPRYTIHILDKPPARGLGKY--AAFIVPQGREVEWIFSTPAGRKKLQDSANFQRLAVVT 335
Query: 364 LDTSHASASMDEIQKDLSPLVKQLAP-GKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTG 422
L +++DE++++L+ +K L+P G D QIP++ G + R + S ++G
Sbjct: 336 LHRDQVYSTLDEVKQELADSIKNLSPAGLTD---QIPYLSLGSDVGKRETLICGFSKISG 392
Query: 423 PIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETER 482
+E++ + RRL+F Q +VQSEAL V+T +
Sbjct: 393 DFRIEEV-------------EANGKTLRRLIFLSNQFVVQSEAL-----------VKTVK 428
Query: 483 KKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKS 542
K K GYLA +H+ + G L ++ V K
Sbjct: 429 IKGKKDRKKID-----------------FGYLACQHHLYMSVGVQLATTVQHPKRDVEKD 471
Query: 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
V V +G G FLH +P I AVE+D ML +AE YF QDK V
Sbjct: 472 VLVVGLGGGGLC--SFLHAALPQARITAVEIDPIMLEVAEQYFELKQDKRFHV 522
|
Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NTR1|MET13_XENLA Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 115/199 (57%), Gaps = 9/199 (4%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F + E W++FF RG +FEWY + +L L I P ++ V GCGNS LS
Sbjct: 10 EFAAPEYWEQFFRRRG-ERAFEWYGGYLELCGLLHKYI-----KPRDKVFVVGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYDAG +TN+D S+VVI M RN R +M ++VMD T F D F +LDKG
Sbjct: 64 EQLYDAGCQNLTNIDVSEVVIRQMNERNSNRRPNMTFQVMDATQTTFDDSCFQAVLDKGT 123
Query: 144 LDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA+M L ++ +SE+ R+L GG+F+C++LA++HVL L F + GW + V
Sbjct: 124 LDAIMTDTDKGTLETADKLMSEIGRVLTCGGRFLCVSLAQAHVLEKLVRHFSQGGWMVRV 183
Query: 201 HAIPQKSSSEPSLQTFMVV 219
H + Q S+SE Q M V
Sbjct: 184 HQVMQGSTSETGSQFPMPV 202
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q10711|ECE2_BOVIN Endothelin-converting enzyme 2 OS=Bos taurus GN=ECE2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 12 SSSATDLLQTLGDFTSKENWDKFFTIRGIGDS--FEWYAEWPQLRDPLISLIGAPTSSPP 69
S+ +L + + + WD+ + +G DS +EW+ ++ RD L P P
Sbjct: 7 SAQVPELPEKNCGYREVQYWDQRY--QGAADSAPYEWFGDFSCFRDLL-----EPELRPL 59
Query: 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129
+ILV GCGNS LS L+ GF +T+VD+S VV++ M R + +RW MD+ ++
Sbjct: 60 DRILVLGCGNSALSYELFLGGFPDVTSVDYSSVVVAAMRARYAHVPT-LRWETMDVRALG 118
Query: 130 FMDETFDVILDKGGLDALMEPE 151
F +FDV+L+KG LDAL+ E
Sbjct: 119 FPSGSFDVVLEKGTLDALLTGE 140
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|O60344|ECE2_HUMAN Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 10/125 (8%)
Query: 29 ENWDKFFTIRGIGDS--FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL 86
E WD+ + +G DS ++W+ ++ R L P P +ILV GCGNS LS L
Sbjct: 24 EYWDQRY--QGAADSAPYDWFGDFSSFRALL-----EPELRPEDRILVLGCGNSALSYEL 76
Query: 87 YDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146
+ GF +T+VD+S VV++ M R+ +RW MD+ + F +FDV+L+KG LDA
Sbjct: 77 FLGGFPNVTSVDYSSVVVAAMQARHAH-VPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 135
Query: 147 LMEPE 151
L+ E
Sbjct: 136 LLAGE 140
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|Q80Z60|ECE2_MOUSE Endothelin-converting enzyme 2 OS=Mus musculus GN=Ece2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
WD+ + +EW+ ++ R L P P +ILV GCGNS LS L+ G
Sbjct: 26 WDQRYKDAADSGPYEWFGDFASFRALL-----EPELCPEDRILVLGCGNSALSYELFLGG 80
Query: 91 FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM-- 148
F +T+VD+S VV++ M R S +RW MD+ ++ F +FDV+L+KG LDA++
Sbjct: 81 FPNVTSVDYSPVVVAAMQVRYAHVPS-LRWETMDVRALDFPSGSFDVVLEKGTLDAMLAG 139
Query: 149 EPEL------GHKLGNQYLSEV 164
EP+ G +Q LSEV
Sbjct: 140 EPDPWNVSSEGVHTVDQVLSEV 161
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 659 | ||||||
| 359477926 | 782 | PREDICTED: methyltransferase-like protei | 0.892 | 0.751 | 0.726 | 0.0 | |
| 224060357 | 779 | predicted protein [Populus trichocarpa] | 0.895 | 0.757 | 0.730 | 0.0 | |
| 255554026 | 761 | S-adenosylmethionine-dependent methyltra | 0.895 | 0.775 | 0.714 | 0.0 | |
| 356512463 | 761 | PREDICTED: methyltransferase-like protei | 0.884 | 0.766 | 0.680 | 0.0 | |
| 356512461 | 762 | PREDICTED: methyltransferase-like protei | 0.881 | 0.762 | 0.678 | 0.0 | |
| 449432402 | 752 | PREDICTED: methyltransferase-like protei | 0.883 | 0.773 | 0.699 | 0.0 | |
| 34148076 | 763 | putative spermine/spermidine synthase [G | 0.887 | 0.766 | 0.672 | 0.0 | |
| 356525225 | 763 | PREDICTED: methyltransferase-like protei | 0.887 | 0.766 | 0.672 | 0.0 | |
| 357518751 | 764 | Methyltransferase-like protein [Medicago | 0.881 | 0.760 | 0.682 | 0.0 | |
| 298205206 | 748 | unnamed protein product [Vitis vinifera] | 0.822 | 0.724 | 0.669 | 0.0 |
| >gi|359477926|ref|XP_002263181.2| PREDICTED: methyltransferase-like protein 13-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/600 (72%), Positives = 503/600 (83%), Gaps = 12/600 (2%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
M KKK+++ +LLQTLGDFTSKENWDKFFTIRG DSFEWYAEWPQL+DPL+S
Sbjct: 1 MSKKKQSEE-------ELLQTLGDFTSKENWDKFFTIRGSDDSFEWYAEWPQLKDPLLSH 53
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ + PP QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR R DMRW
Sbjct: 54 LSSTPPPPPLQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRSRPDMRW 113
Query: 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
RVMD+TSMQF D +FD ILDKGGLDALMEPELG KLG YL+EVKR+LKSGGKF+ LTLA
Sbjct: 114 RVMDITSMQFPDGSFDAILDKGGLDALMEPELGPKLGKMYLTEVKRVLKSGGKFIGLTLA 173
Query: 181 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 240
ESHVLGLLF KFRFGWKMS+H + QK S++PSL TFMVVA+KE+S+V+ Q+T+SF SSL
Sbjct: 174 ESHVLGLLFSKFRFGWKMSIHVVSQKPSNKPSLLTFMVVAEKESSTVLHQITTSFARSSL 233
Query: 241 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 300
D N NQA G++EA+E+EN+ RREYS+GSD++YSLEDLQLGAKGD+ LS G RF+L LG
Sbjct: 234 DLNGNQARGLYEAIENENRIRREYSNGSDLIYSLEDLQLGAKGDLLELSQGRRFQLTLGE 293
Query: 301 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 360
FSYRAV+LDAR+ + PF+Y+CGVF+VPKTRAHEWLFSSEEGQW+VVESSKAARLI
Sbjct: 294 YEGSRFSYRAVVLDARQMTEPFLYHCGVFLVPKTRAHEWLFSSEEGQWMVVESSKAARLI 353
Query: 361 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 420
MVLLDTSH +ASMD+IQKDLSPLVK+LAP ++ GAQIPFM+AGDGIK R +VHQ TS+L
Sbjct: 354 MVLLDTSHTNASMDDIQKDLSPLVKRLAPANNNTGAQIPFMIAGDGIKQRKIVHQVTSTL 413
Query: 421 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 480
TG I VED+VYENVD + S + PS+ L FRRL FQR +GLVQSEALL R+G + + ET
Sbjct: 414 TGLITVEDVVYENVDGKVSHLVPSKALLFRRLTFQRAEGLVQSEALLTREGGTQKIVSET 473
Query: 481 ERKKASSSSKSKRKGTQRRSDD-----SGNQLKVYHGYLASSYHMGIISGFTLISSYLES 535
ERKK+ SSSKS++KG Q++ D S N LKVYH YLASSYHMGIISGF LISSYLES
Sbjct: 474 ERKKSISSSKSRKKGNQKKIDSLAIHGSSNNLKVYHNYLASSYHMGIISGFMLISSYLES 533
Query: 536 VASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
VAS G++VKAVVIGLGAGLLPMFLH CMPF+ IE VELD +LNLA +YFGF +DK LKV
Sbjct: 534 VASTGRTVKAVVIGLGAGLLPMFLHGCMPFLDIEVVELDPVILNLARNYFGFCEDKHLKV 593
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060357|ref|XP_002300159.1| predicted protein [Populus trichocarpa] gi|222847417|gb|EEE84964.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/601 (73%), Positives = 499/601 (83%), Gaps = 11/601 (1%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGKK K SS +S +LL TLGDFTSKENWDKFFTIRG DSFEWYAEW +L PL+SL
Sbjct: 1 MGKKDKQ--SSKASTEELLTTLGDFTSKENWDKFFTIRGTDDSFEWYAEWTELHHPLLSL 58
Query: 61 IG------APTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD 114
+ + +SSP +ILVPGCGNS+LSE+LYDAGF ITN+DFSKVVISDMLRRNVRD
Sbjct: 59 LAGNDENHSSSSSPLLKILVPGCGNSKLSENLYDAGFKEITNIDFSKVVISDMLRRNVRD 118
Query: 115 RSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 174
R MRWRVMDMT MQ DE+FDV+LDKGGLDALMEPELG KLGNQYLSEVKR+L GKF
Sbjct: 119 RPGMRWRVMDMTQMQLADESFDVVLDKGGLDALMEPELGPKLGNQYLSEVKRVLNFEGKF 178
Query: 175 VCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSS 234
+CLTLAESHVL LLF KFRFGWKMSV AIPQK SS+P L+TFMVVA+KENSS + +T+
Sbjct: 179 ICLTLAESHVLALLFSKFRFGWKMSVQAIPQKPSSKPDLRTFMVVAEKENSSALHFITAL 238
Query: 235 FDHSSLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRF 294
FDHSSLDC NQA G+HEALE+ENQ R+EYS G DILYSLEDL +GAKGD+ LS G RF
Sbjct: 239 FDHSSLDCIGNQAIGLHEALENENQIRKEYSIGPDILYSLEDLLIGAKGDLSKLSLGRRF 298
Query: 295 ELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESS 354
+L LGG GD FSY+A++LDA+E+S F Y+CGVFIVPKTRAHEWLFSSEEGQWLVVESS
Sbjct: 299 QLTLGGNGDSRFSYKAIVLDAKESSSQFTYHCGVFIVPKTRAHEWLFSSEEGQWLVVESS 358
Query: 355 KAARLIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVH 414
KAARLIM+++D+SH +ASMD+IQKDLSPLVKQLAPGKDD AQIPFMMAGDGIK R VH
Sbjct: 359 KAARLIMIIMDSSHNNASMDDIQKDLSPLVKQLAPGKDDNSAQIPFMMAGDGIKERKTVH 418
Query: 415 QATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSH 474
+ TSSLTG IIVED+VYENV + SR +PS DL FRRLVFQR +GLVQSEALL RD SSH
Sbjct: 419 KVTSSLTGSIIVEDVVYENVADDVSRPFPSSDLIFRRLVFQRAEGLVQSEALLTRDESSH 478
Query: 475 RTDVETERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLE 534
+ E KK +SSSKSK+KG+Q+R+D S LKVYH Y+ASSYHMGI+SGFTL+SSYLE
Sbjct: 479 KI---VEEKKKTSSSKSKKKGSQKRNDASSKILKVYHDYMASSYHMGIVSGFTLMSSYLE 535
Query: 535 SVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK 594
SV S GK+V AV+IGLGAGLLPMFLH CMP + IE VELD +L+LA DYFGF +D+ LK
Sbjct: 536 SVESTGKTVNAVIIGLGAGLLPMFLHGCMPSLQIEVVELDAVVLSLARDYFGFAEDERLK 595
Query: 595 V 595
V
Sbjct: 596 V 596
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554026|ref|XP_002518053.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223542649|gb|EEF44186.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/595 (71%), Positives = 498/595 (83%), Gaps = 5/595 (0%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGK+ K QS SS+ DLL+TLGDFTSKENWDKFFTIRG DSFEWYAEWPQLR PL+SL
Sbjct: 1 MGKRDKQQSQPSSN--DLLETLGDFTSKENWDKFFTIRGADDSFEWYAEWPQLRQPLLSL 58
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
S P QIL+PGCGNSRLSE+LYD GF ITN+DFSKVVISDMLRRNVRDR MRW
Sbjct: 59 FANDDS--PVQILMPGCGNSRLSENLYDLGFKDITNIDFSKVVISDMLRRNVRDRPGMRW 116
Query: 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
RVMDMT MQF DETFDV+LDKGGLDALMEPELG KLG +YLSEV+R+LK GGKF+CLTLA
Sbjct: 117 RVMDMTDMQFADETFDVVLDKGGLDALMEPELGPKLGTKYLSEVQRVLKFGGKFICLTLA 176
Query: 181 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 240
ESHVLGLLF KFRFGWK+++HAIP +S+PSL+TFMV A+K N S + + SSFDH ++
Sbjct: 177 ESHVLGLLFSKFRFGWKLNIHAIPWNLASKPSLRTFMVAAEKGNLSDLHLIMSSFDHYTV 236
Query: 241 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 300
C+ NQA +HEALE+EN+ R+EYS GSDILYSLEDL+LGAKGD+ LS G R +L LGG
Sbjct: 237 GCSGNQAASLHEALENENRIRKEYSSGSDILYSLEDLRLGAKGDLTKLSQGRRIQLTLGG 296
Query: 301 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 360
+G F+Y+AVLLDA+ENS PF ++CG+FIVPKTRAHEWLF SEEGQW+VVESS+AARLI
Sbjct: 297 QGGSRFTYKAVLLDAKENSAPFSFHCGIFIVPKTRAHEWLFCSEEGQWMVVESSQAARLI 356
Query: 361 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 420
MV+LD+SH S++MD+IQKDLSPLVKQLAPG+ D GAQIPFMMAGDGIK RNVVH+ TSSL
Sbjct: 357 MVILDSSHTSSTMDDIQKDLSPLVKQLAPGEGDNGAQIPFMMAGDGIKQRNVVHEVTSSL 416
Query: 421 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 480
TG IIVED+VYE+VD + S + PS+DL FRRLVFQRT+GLVQSE LL RD ++
Sbjct: 417 TGSIIVEDVVYEDVDDDVSCLLPSKDLIFRRLVFQRTEGLVQSEGLLKRDEFCNKIS-GI 475
Query: 481 ERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVG 540
++KK +SSSKSK++G ++++D+S NQLKVYH YLASSYH GIISGF LISSYLESV S G
Sbjct: 476 DKKKKTSSSKSKKRGNKKQNDESSNQLKVYHDYLASSYHTGIISGFMLISSYLESVESAG 535
Query: 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
+V VV+GLGAGLLPMFLH C+PF+ +E VELD +L LA+DYFGF +DK LKV
Sbjct: 536 NTVNTVVVGLGAGLLPMFLHGCLPFLHLEVVELDPVVLALAKDYFGFIEDKHLKV 590
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512463|ref|XP_003524938.1| PREDICTED: methyltransferase-like protein 13-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/595 (68%), Positives = 476/595 (80%), Gaps = 12/595 (2%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWDKFFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKGKKKGSPE----DILETLGDFTSKENWDKFFTLRG--DSFEWYAEWPNLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ T P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVISDMLRRNVRDR MRW
Sbjct: 55 L--KTVPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVISDMLRRNVRDRPLMRW 112
Query: 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
R+MDMT+MQF DE+F ++DKGGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTLA
Sbjct: 113 RIMDMTAMQFEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTLA 172
Query: 181 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 240
ESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SSL
Sbjct: 173 ESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSSL 232
Query: 241 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 300
CN Q G+HEAL++ENQ R +YS GS++LYS+EDLQ ++ LS G R +L LGG
Sbjct: 233 HCNSKQVSGLHEALQNENQIREKYSSGSNLLYSVEDLQ----EELTKLSQGRRLQLTLGG 288
Query: 301 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 360
+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SS+AARLI
Sbjct: 289 QGYSTFSYRAVILDAEEQASPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSEAARLI 348
Query: 361 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 420
MV LD SH+ SM+EIQKDLSPLV QLAP +++ GA+IPFMMA +GIK RN++H+ TSSL
Sbjct: 349 MVYLDASHSDTSMEEIQKDLSPLVTQLAPAENENGAKIPFMMASEGIKERNIIHKVTSSL 408
Query: 421 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 480
TG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + S + ET
Sbjct: 409 TGSIIVEDVIYENVDSEVSCIFPSRELVFRRLVFERAANLVQSEALLKDEQSPTKLVSET 468
Query: 481 ERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVG 540
RKK ++SSKS++ G+QR S + +QL VYHGY+ASSYH GIISGFTLISSY+E+VAS G
Sbjct: 469 GRKKNNASSKSRKSGSQRHSIGASSQLTVYHGYVASSYHTGIISGFTLISSYMENVASSG 528
Query: 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
K VKAV+IGLGAGLL MFLH C+PF+ IE VELD ++++A DYF F +DK LKV
Sbjct: 529 KMVKAVIIGLGAGLLSMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKRLKV 583
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512461|ref|XP_003524937.1| PREDICTED: methyltransferase-like protein 13-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/598 (67%), Positives = 475/598 (79%), Gaps = 17/598 (2%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWDKFFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKGKKKGSPE----DILETLGDFTSKENWDKFFTLRG--DSFEWYAEWPNLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ T P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVISDMLRRNVRDR MRW
Sbjct: 55 L--KTVPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVISDMLRRNVRDRPLMRW 112
Query: 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
R+MDMT+MQF DE+F ++DKGGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTLA
Sbjct: 113 RIMDMTAMQFEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTLA 172
Query: 181 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 240
ESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SSL
Sbjct: 173 ESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSSL 232
Query: 241 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 300
CN Q G+HEAL++ENQ R +YS GS++LYS+EDLQ ++ LS G R +L LGG
Sbjct: 233 HCNSKQVSGLHEALQNENQIREKYSSGSNLLYSVEDLQ----EELTKLSQGRRLQLTLGG 288
Query: 301 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 360
+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SS+AARLI
Sbjct: 289 QGYSTFSYRAVILDAEEQASPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSEAARLI 348
Query: 361 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 420
MV LD SH+ SM+EIQKDLSPLV QLAP +++ GA+IPFMMA +GIK RN++H+ TSSL
Sbjct: 349 MVYLDASHSDTSMEEIQKDLSPLVTQLAPAENENGAKIPFMMASEGIKERNIIHKVTSSL 408
Query: 421 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 480
TG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + S + ET
Sbjct: 409 TGSIIVEDVIYENVDSEVSCIFPSRELVFRRLVFERAANLVQSEALLKDEQSPTKLVSET 468
Query: 481 ERKKASSSSKSKRKGTQRRSDDSGNQ---LKVYHGYLASSYHMGIISGFTLISSYLESVA 537
RKK ++SSKS++ G+QR S GN L VYHGY+ASSYH GIISGFTLISSY+E+VA
Sbjct: 469 GRKKNNASSKSRKSGSQRHS--IGNYFPLLTVYHGYVASSYHTGIISGFTLISSYMENVA 526
Query: 538 SVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
S GK VKAV+IGLGAGLL MFLH C+PF+ IE VELD ++++A DYF F +DK LKV
Sbjct: 527 SSGKMVKAVIIGLGAGLLSMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKRLKV 584
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432402|ref|XP_004133988.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus] gi|449517108|ref|XP_004165588.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/583 (69%), Positives = 476/583 (81%)
Query: 13 SSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQI 72
+ A ++LQTLGDFTSKENWD FFTIRG GD+FEWYAEWP+L+DPLIS + + SP PQI
Sbjct: 2 AKADNILQTLGDFTSKENWDNFFTIRGHGDAFEWYAEWPELKDPLISHLPTLSKSPSPQI 61
Query: 73 LVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMD 132
LVPGCGNS LSE LYDAGF ITN+DFSKV ISDMLRRNVR+R DMRWRVMDMT+MQF +
Sbjct: 62 LVPGCGNSSLSEQLYDAGFRCITNIDFSKVAISDMLRRNVRERPDMRWRVMDMTNMQFTN 121
Query: 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 192
+TFD ++DKGGLDALMEPE+G KLG+QYLSEVKR+LK GGKF+CLTLAESHVLGLLFPKF
Sbjct: 122 DTFDAVVDKGGLDALMEPEVGSKLGSQYLSEVKRVLKPGGKFICLTLAESHVLGLLFPKF 181
Query: 193 RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHE 252
RFGWKMS+H IP K S+PS +TFMVV +K+ S+ Q+ SS + SSLD +Q + +
Sbjct: 182 RFGWKMSIHVIPPKPPSKPSFRTFMVVVEKDESTAWHQIESSLNFSSLDSRGDQTRELVQ 241
Query: 253 ALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVL 312
+LE+EN+ R +YS G D+L+SLEDLQLGAKGD++ L G R + LGG+G FSYRAVL
Sbjct: 242 SLENENRIREKYSSGDDLLFSLEDLQLGAKGDLQKLHRGRRVQFTLGGQGTSIFSYRAVL 301
Query: 313 LDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASAS 372
LDARE+SGPF Y CGVFIVPKTRAHEWLFSSEEGQW+VVESSKAARLIMVLLD + + A+
Sbjct: 302 LDAREHSGPFSYECGVFIVPKTRAHEWLFSSEEGQWMVVESSKAARLIMVLLDETQSGAN 361
Query: 373 MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYE 432
MD IQKDLSPLVKQLAPG+DD G+QIPFMMA DGIK RN V Q TSSLTG I+VED+ YE
Sbjct: 362 MDAIQKDLSPLVKQLAPGEDDSGSQIPFMMASDGIKERNCVFQGTSSLTGSIVVEDVKYE 421
Query: 433 NVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSK 492
+V + SRI+PS DL FRRLVFQRT+ LVQSEALL R+ + + +RKK+ +SSKSK
Sbjct: 422 HVSGDASRIFPSGDLIFRRLVFQRTESLVQSEALLTRERVDDKVSGQMDRKKSHASSKSK 481
Query: 493 RKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGA 552
KG +R + +S +Q+K YHGYLASSYH GIISGF LIS YL SVAS GK V AVVIGLGA
Sbjct: 482 NKGKKRLNKESSDQMKAYHGYLASSYHSGIISGFMLISQYLGSVASAGKMVNAVVIGLGA 541
Query: 553 GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
GLLPMFL CM F+ IE VELD +LNLA DYF FT+D +LKV
Sbjct: 542 GLLPMFLRACMSFLHIEVVELDSMILNLARDYFDFTEDANLKV 584
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|34148076|gb|AAQ62585.1| putative spermine/spermidine synthase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/595 (67%), Positives = 468/595 (78%), Gaps = 10/595 (1%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWD FFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKAKKKGSPE----DILETLGDFTSKENWDNFFTLRG--DSFEWYAEWPHLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVI DMLRRNVRDR MRW
Sbjct: 55 LKTIPLPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVIGDMLRRNVRDRPLMRW 114
Query: 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
RVMDMT MQF DE+F ++DKGGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTLA
Sbjct: 115 RVMDMTVMQFEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTLA 174
Query: 181 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 240
ESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SSL
Sbjct: 175 ESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSSL 234
Query: 241 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 300
N Q G+HEAL++ENQ R +YS GSDILYS+EDLQ ++ LS G R +L LGG
Sbjct: 235 HSNSKQVSGLHEALQNENQIREKYSSGSDILYSVEDLQ----EELTKLSQGRRLQLTLGG 290
Query: 301 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 360
+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SSKAARLI
Sbjct: 291 QGYSTFSYRAVILDAEEQADPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSKAARLI 350
Query: 361 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 420
MV LD SH+ SM+EIQKDLSPLV QLAP ++ GA+IPFMMA +GIK RN++H+ TSSL
Sbjct: 351 MVYLDASHSDTSMEEIQKDLSPLVTQLAPAENGNGAKIPFMMASEGIKERNIIHKVTSSL 410
Query: 421 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 480
TG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + + ET
Sbjct: 411 TGSIIVEDVIYENVDSEVSCIFPSGELMFRRLVFERAANLVQSEALLKDEQLPTKLVSET 470
Query: 481 ERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVG 540
+KK ++SSKS++ G+ R S + +QL VYHGY+ASSYH GIISGF LISS++E+VAS G
Sbjct: 471 GKKKTNASSKSRKSGSWRDSVGASSQLTVYHGYVASSYHTGIISGFMLISSHMENVASSG 530
Query: 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
K VKAV+IGLGAGLLPMFLH C+PF+ IE VELD ++++A DYF F +DK +KV
Sbjct: 531 KMVKAVIIGLGAGLLPMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKHVKV 585
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525225|ref|XP_003531227.1| PREDICTED: methyltransferase-like protein 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/595 (67%), Positives = 468/595 (78%), Gaps = 10/595 (1%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWD FFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKAKKKGSPE----DILETLGDFTSKENWDNFFTLRG--DSFEWYAEWPHLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVI DMLRRNVRDR MRW
Sbjct: 55 LKTIPLPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVIGDMLRRNVRDRPLMRW 114
Query: 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
RVMDMT MQF DE+F ++DKGGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTLA
Sbjct: 115 RVMDMTVMQFEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTLA 174
Query: 181 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 240
ESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SSL
Sbjct: 175 ESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSSL 234
Query: 241 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 300
N Q G+HEAL++ENQ R +YS GSDILYS+EDLQ ++ LS G R +L LGG
Sbjct: 235 HSNSKQVSGLHEALQNENQIREKYSSGSDILYSVEDLQ----EELTKLSQGRRLQLTLGG 290
Query: 301 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 360
+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SSKAARLI
Sbjct: 291 QGYSTFSYRAVILDAEEQADPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSKAARLI 350
Query: 361 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 420
MV LD SH+ SM+EIQKDLSPLV QLAP ++ GA+IPFMMA +GIK RN++H+ TSSL
Sbjct: 351 MVYLDASHSDTSMEEIQKDLSPLVTQLAPAENGNGAKIPFMMASEGIKERNIIHKVTSSL 410
Query: 421 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 480
TG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + + ET
Sbjct: 411 TGSIIVEDVIYENVDSEVSCIFPSGELMFRRLVFERAANLVQSEALLKDEQLPTKLVSET 470
Query: 481 ERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVG 540
+KK ++SSKS++ G+ R S + +QL VYHGY+ASSYH GIISGF LISS++E+VAS G
Sbjct: 471 GKKKNNASSKSRKSGSWRDSVGASSQLTVYHGYVASSYHTGIISGFMLISSHMENVASSG 530
Query: 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
K VKAV+IGLGAGLLPMFLH C+PF+ IE VELD ++++A DYF F +DK +KV
Sbjct: 531 KMVKAVIIGLGAGLLPMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKHVKV 585
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357518751|ref|XP_003629664.1| Methyltransferase-like protein [Medicago truncatula] gi|355523686|gb|AET04140.1| Methyltransferase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/589 (68%), Positives = 462/589 (78%), Gaps = 8/589 (1%)
Query: 9 SSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSP 68
S S + DLL TLGDFTSKENWD FFTIR DSFEWYAEWP LRDPLISL+ T P
Sbjct: 3 SKSKTEKKDLLDTLGDFTSKENWDNFFTIRP--DSFEWYAEWPHLRDPLISLLQTLTPPP 60
Query: 69 PPQ--ILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126
P +LVPGCGNSRLSEHLYDAGF ITN+DFSKVVI DMLRRN+R R MRWRVMDMT
Sbjct: 61 PASLPVLVPGCGNSRLSEHLYDAGFTSITNIDFSKVVIGDMLRRNIRSRPLMRWRVMDMT 120
Query: 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186
+MQF DE F ++DKGGLDALMEPELG LGNQYLSEVKR+LK GGKFVCLTLAESHVL
Sbjct: 121 AMQFEDEFFGAVVDKGGLDALMEPELGPTLGNQYLSEVKRVLKPGGKFVCLTLAESHVLD 180
Query: 187 LLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQ 246
+LF KFR GWKMSV AIP KSS +P+LQTFMVV +KE S+ V Q+TS ++SL CN Q
Sbjct: 181 ILFSKFRLGWKMSVDAIPMKSSGKPNLQTFMVVVEKELSTAVHQITSLLQNASLHCNSEQ 240
Query: 247 AFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCF 306
A G+ EAL++ENQ R + S SD LYS+E+LQ+ ++ +S G R +L LGG+G F
Sbjct: 241 ASGLREALQNENQVREKLSSSSDKLYSMENLQV----ELIKISQGRRVQLTLGGQGCSVF 296
Query: 307 SYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDT 366
SYRA + DA E S PF Y+CGVFIVPK RA EWLF SEEGQW+VV SSKAARLIMV LDT
Sbjct: 297 SYRAAVFDAEEQSDPFTYHCGVFIVPKIRAREWLFFSEEGQWMVVRSSKAARLIMVFLDT 356
Query: 367 SHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIV 426
SH +ASMDEIQKDLSPLVKQL P +++ GAQIPF+MA DGIK RN+V Q TSSLTG IIV
Sbjct: 357 SHTNASMDEIQKDLSPLVKQLEPKENENGAQIPFLMASDGIKKRNIVDQITSSLTGSIIV 416
Query: 427 EDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKAS 486
ED+VYENVD E I+PS +L FRRLVF+R LVQSEALL + + ETERKK +
Sbjct: 417 EDVVYENVDSEVGCIFPSRELIFRRLVFERAANLVQSEALLTVEHLPTKLVGETERKKTN 476
Query: 487 SSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAV 546
SSSKSK+ +QRR+D + NQL VYHGY+ASSYH GIISGFTLISSY+E+VAS GK VKAV
Sbjct: 477 SSSKSKKSASQRRNDGAYNQLTVYHGYVASSYHTGIISGFTLISSYMENVASSGKMVKAV 536
Query: 547 VIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
VIGLGAGLLPMFLH C+P + IEAVELD ++++A +F F +DK LKV
Sbjct: 537 VIGLGAGLLPMFLHRCIPVLEIEAVELDPVIVDIARKHFRFVEDKRLKV 585
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205206|emb|CBI17265.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/612 (66%), Positives = 470/612 (76%), Gaps = 70/612 (11%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
M KKK+++ +LLQTLGDFTSKENWDKFFTIRG DSFEWYAEWPQL+DPL+S
Sbjct: 1 MSKKKQSEE-------ELLQTLGDFTSKENWDKFFTIRGSDDSFEWYAEWPQLKDPLLSH 53
Query: 61 IG--APTSSPPP----------QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 108
+ AP S P QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML
Sbjct: 54 LSSTAPPSDPASEPPQPPPPPLQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 113
Query: 109 RRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL 168
RRNVR R DMRWRVMD+TSMQF D +FD ILDKGGLDALMEPELG KLG YL+EVKR+L
Sbjct: 114 RRNVRSRPDMRWRVMDITSMQFPDGSFDAILDKGGLDALMEPELGPKLGKMYLTEVKRVL 173
Query: 169 KSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVV 228
KSGGKF+ LTLAESHVLGLLF KFRFGWKMS+H + QK S++PSL TFMVVA+KE+S+V+
Sbjct: 174 KSGGKFIGLTLAESHVLGLLFSKFRFGWKMSIHVVSQKPSNKPSLLTFMVVAEKESSTVL 233
Query: 229 LQVTSSFDHSSLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNL 288
Q+T+SF SSLD N NQA G++EA+E+EN+ RREYS+GSD++YSLEDLQLGAKGD+
Sbjct: 234 HQITTSFARSSLDLNGNQARGLYEAIENENRIRREYSNGSDLIYSLEDLQLGAKGDLF-- 291
Query: 289 SPGCRFELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQW 348
+TRAHEWLFSSEEGQW
Sbjct: 292 --------------------------------------------QTRAHEWLFSSEEGQW 307
Query: 349 LVVESSKAARLIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIK 408
+VVESSKAARLIMVLLDTSH +ASMD+IQKDLSPLVK+LAP ++ GAQIPFM+AGDGIK
Sbjct: 308 MVVESSKAARLIMVLLDTSHTNASMDDIQKDLSPLVKRLAPANNNTGAQIPFMIAGDGIK 367
Query: 409 HRNVVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLM 468
R +VHQ TS+LTG I VED+VYENVD + S + PS+ L FRRL FQR +GLVQSEALL
Sbjct: 368 QRKIVHQVTSTLTGLITVEDVVYENVDGKVSHLVPSKALLFRRLTFQRAEGLVQSEALLT 427
Query: 469 RDGSSHRTDVETERKKASSSSKSKRKGTQRRSDD-----SGNQLKVYHGYLASSYHMGII 523
R+G + + ETERKK+ SSSKS++KG Q++ D S N LKVYH YLASSYHMGII
Sbjct: 428 REGGTQKIVSETERKKSISSSKSRKKGNQKKIDSLAIHGSSNNLKVYHNYLASSYHMGII 487
Query: 524 SGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583
SGF LISSYLESVAS G++VKAVVIGLGAGLLPMFLH CMPF+ IE VELD +LNLA +
Sbjct: 488 SGFMLISSYLESVASTGRTVKAVVIGLGAGLLPMFLHGCMPFLDIEVVELDPVILNLARN 547
Query: 584 YFGFTQDKSLKV 595
YFGF +DK LKV
Sbjct: 548 YFGFCEDKHLKV 559
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 659 | ||||||
| TAIR|locus:2045253 | 760 | AT2G31740 [Arabidopsis thalian | 0.887 | 0.769 | 0.612 | 2.9e-209 | |
| UNIPROTKB|F1PDJ6 | 699 | METTL13 "Uncharacterized prote | 0.584 | 0.550 | 0.349 | 1.2e-68 | |
| UNIPROTKB|F1S7S8 | 699 | METTL13 "Uncharacterized prote | 0.584 | 0.550 | 0.349 | 3.5e-67 | |
| UNIPROTKB|A5PK19 | 699 | METTL13 "Methyltransferase-lik | 0.584 | 0.550 | 0.351 | 4.5e-67 | |
| MGI|MGI:1918699 | 698 | Mettl13 "methyltransferase lik | 0.590 | 0.557 | 0.346 | 6.1e-66 | |
| UNIPROTKB|B4E2X3 | 698 | METTL13 "cDNA FLJ56024" [Homo | 0.584 | 0.551 | 0.346 | 1.7e-65 | |
| UNIPROTKB|Q8N6R0 | 699 | METTL13 "Methyltransferase-lik | 0.584 | 0.550 | 0.346 | 1.7e-65 | |
| UNIPROTKB|F1PCU5 | 608 | F1PCU5 "Uncharacterized protei | 0.584 | 0.633 | 0.349 | 5.4e-65 | |
| RGD|1311526 | 700 | Mettl13 "methyltransferase lik | 0.591 | 0.557 | 0.346 | 1.4e-64 | |
| FB|FBgn0032873 | 673 | CG2614 [Drosophila melanogaste | 0.303 | 0.297 | 0.375 | 1.7e-48 |
| TAIR|locus:2045253 AT2G31740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1850 (656.3 bits), Expect = 2.9e-209, Sum P(2) = 2.9e-209
Identities = 366/598 (61%), Positives = 450/598 (75%)
Query: 1 MGKKKKNQXXXXXXATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGKKK N+ D LQTL DFTSKENWDKFFT+RG DSFEWYAEWPQL D L+ L
Sbjct: 1 MGKKKGNKAAASTD--DFLQTLEDFTSKENWDKFFTLRGNDDSFEWYAEWPQLHDSLLPL 58
Query: 61 I--GAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM 118
+ + +SS QILVPGCGNSRL+EHLYDAGF ITNVDFSKVVISDMLRRN+R R ++
Sbjct: 59 LQDSSSSSSDSLQILVPGCGNSRLTEHLYDAGFRDITNVDFSKVVISDMLRRNIRTRPEL 118
Query: 119 RWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178
RWRVMD+T MQ DE+FD +LDKG LDALMEPE+G KLGNQYLSE KR+LK GGKF+CLT
Sbjct: 119 RWRVMDITKMQLADESFDTVLDKGALDALMEPEVGTKLGNQYLSEAKRVLKPGGKFICLT 178
Query: 179 LAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHS 238
LAESHVL LLF +FRFGWKM+VH+I QK S L+T+MVVA+KENS ++ ++TS+F+
Sbjct: 179 LAESHVLALLFSRFRFGWKMNVHSIAQKRSK---LKTYMVVAEKENSVLLHEITSAFELV 235
Query: 239 SLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELIL 298
SL N +Q G+ EA+ESEN+ RR+ ++GSD+LYS EDL+LG KGD+ L+ G R + L
Sbjct: 236 SLGRNDSQGSGMREAVESENKIRRDCNNGSDLLYSHEDLKLGIKGDLAELTEGRRIKFTL 295
Query: 299 GGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAAR 358
GG+G FSYRAVLLDA++ + PF+Y CGVF+VPKTRAHEWLF SEEGQW VVESS+AAR
Sbjct: 296 GGQGSN-FSYRAVLLDAQKQTEPFVYYCGVFLVPKTRAHEWLFCSEEGQWQVVESSQAAR 354
Query: 359 LIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATS 418
LIMV LD+SH+ A+M++IQ DLSP+V QLAP DD+ A+IP+MMA DGIK R+ VH+ TS
Sbjct: 355 LIMVFLDSSHSGATMEDIQNDLSPMVTQLAPRNDDE-ARIPYMMASDGIKKRDTVHEVTS 413
Query: 419 SLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDV 478
+TG ++VED+VYE+ + S DL FRRLVF+RT+GL+QSEALL+ DG
Sbjct: 414 PMTGKVVVEDVVYESAPSNLEDLSTSSDLAFRRLVFKRTEGLIQSEALLVEDGEILE--- 470
Query: 479 ETEXXXXXXXXXXXXXGTQRRSDDSGNQL-KVYHGYLASSYHMGIISGFTLISSYLEXXX 537
+++ G ++++ + L +V H YLASSYH GIISGFTL+SSYL+
Sbjct: 471 QSQKEKTKNVSQSKRKGNKKQNQEPSRPLMRVSHDYLASSYHTGIISGFTLVSSYLKKAE 530
Query: 538 XXXXXXXXXXIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
IGLGAGLLPMFLH C+PF IEAVELD ML++ +DYFGFTQ+ LKV
Sbjct: 531 SCGTMVKTVVIGLGAGLLPMFLHGCLPFFSIEAVELDPVMLSVGKDYFGFTQNDRLKV 588
|
|
| UNIPROTKB|F1PDJ6 METTL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 1.2e-68, Sum P(3) = 1.2e-68
Identities = 145/415 (34%), Positives = 208/415 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
DF S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 DFGSVDYWEKFFQQRG-KKAFEWYGSYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT M+F D +F V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 144 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + Q +EP SL F + K V F+ + + K E L
Sbjct: 184 HQVANSQDQVLEAEPRFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQGKPVRLESAEQL 242
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
+ R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 243 AEAVRERQQYAW----LCS----QLYRKAGLGSVS----LDLCDGDTGEPRYTLHVV--D 288
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
+ + +FI+P+ R EWLF EEG+ + ++ RLI V L MD
Sbjct: 289 SPTVKPSRDNHFAIFIIPQGRETEWLFGMEEGRKQLAATAGFRRLITVALHRGQQYEGMD 348
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDL 429
IQ +LS V +LAP Q+PF+ G I R V HQ S L+G +VED+
Sbjct: 349 SIQAELSARVMELAPAGMPSQQQVPFLSVGGDIGVRTVQHQNCSPLSGSYVVEDV 403
|
|
| UNIPROTKB|F1S7S8 METTL13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 3.5e-67, Sum P(3) = 3.5e-67
Identities = 145/415 (34%), Positives = 208/415 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R + + MDMT M+F D +F V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQLSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 144 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++HVL F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + Q SEP SL F + K V F+ + + K E L
Sbjct: 184 HQVANSQDQLLDSEPRFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQGKPVRLESAERL 242
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
+ R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 243 AEAVRERQQYAW----LCS----QLYRKAGLGSVS----LDLCNGDTGEPRYTLHVV--D 288
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
+ + +FI+P+ R EWLF EEG+ + S+ RLI V L MD
Sbjct: 289 SPTVKASRDSHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRGQQYEGMD 348
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDL 429
IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED+
Sbjct: 349 SIQAELSARVMELAPAGMPAQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDV 403
|
|
| UNIPROTKB|A5PK19 METTL13 "Methyltransferase-like protein 13" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 4.5e-67, Sum P(3) = 4.5e-67
Identities = 146/415 (35%), Positives = 209/415 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVVGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT M+F D +F V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 144 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++HVL F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + Q +EP SL F + K V F+ + + K E L
Sbjct: 184 HQVASSQDQLLEAEPRFSLPVFAFIMTKFRP-VTGSALQIFELCAQEQGKPVRLESAEQL 242
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
+ R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 243 AEAVRERQQYAW----LCS----QLYRKAGLGSVS----LDLCNGDTGEPRYTLHVV--D 288
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
+ + +FI+P+ R EWLF EEG+ + S+ RLI V L MD
Sbjct: 289 SPTVKPSRDNHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRGQQYEGMD 348
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDL 429
IQ +LS V +LAP Q+PF+ G I R V HQA S L+G ++ED+
Sbjct: 349 SIQAELSARVMELAPAGMPAQLQVPFLSVGGDIGVRIVQHQACSPLSGDYVIEDV 403
|
|
| MGI|MGI:1918699 Mettl13 "methyltransferase like 13" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 145/419 (34%), Positives = 213/419 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L + L I P ++LV GCGNS LS
Sbjct: 10 EFGSADYWEKFFQQRG-KTAFEWYGTYLELCEVLHKYI-----KPKEKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT ++F D TF V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNGSRRPHMSFLKMDMTQLEFPDATFQVVLDKGT 123
Query: 144 LDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E E+ + ++ L+EV R+L+ GG+++C++LA++H+L F R GW +
Sbjct: 124 LDAVLTDEEEVTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRA 183
Query: 201 HAIPQK----SSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + S +EP SL F V K V F+ C + Q + L
Sbjct: 184 HQVASSQDRVSEAEPRFSLPVFAFVMTKFRP-VPGSALQIFEL----CTQEQGKPVR--L 236
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
ES +Q Y+ QL K + ++S +L G G+ ++ V
Sbjct: 237 ESADQLAEAVRERQ--YYAWLCSQLRRKAGLGSVS----LDLCSGDTGEPRYTLHVVDNP 290
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
A + S + +FI+P+ R EWLF EEG+ + S+ RL+ V L A M+
Sbjct: 291 AVKPSRDNHF--AIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLVTVALHRGQRYAGME 348
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYEN 433
IQ +LS V +LAP Q+PF+ G I R V HQ S+L+G ++ED+ E+
Sbjct: 349 SIQAELSARVMELAPAGLPPQQQVPFLSVGGDIGVRTVQHQDHSALSGDYVIEDVQGED 407
|
|
| UNIPROTKB|B4E2X3 METTL13 "cDNA FLJ56024" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 1.7e-65, Sum P(3) = 1.7e-65
Identities = 144/415 (34%), Positives = 208/415 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 9 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 62
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M N R M + MDMT M+F D +F V+LDKG
Sbjct: 63 EQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGT 122
Query: 144 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 123 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 182
Query: 201 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + Q +EP SL F + K V F+ + + K E L
Sbjct: 183 HQVANSQDQVLEAEPQFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQRKPVRLESAERL 241
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
Q R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 242 AEAVQERQQYAW----LCS----QLRRKARLGSVS----LDLCDGDTGEPRYTLHVV--D 287
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
+ + +FI+P+ R EWLF +EG+ + S+ RLI V L SMD
Sbjct: 288 SPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESMD 347
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDL 429
IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED+
Sbjct: 348 HIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDV 402
|
|
| UNIPROTKB|Q8N6R0 METTL13 "Methyltransferase-like protein 13" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 1.7e-65, Sum P(3) = 1.7e-65
Identities = 144/415 (34%), Positives = 208/415 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M N R M + MDMT M+F D +F V+LDKG
Sbjct: 64 EQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 144 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + Q +EP SL F + K V F+ + + K E L
Sbjct: 184 HQVANSQDQVLEAEPQFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQRKPVRLESAERL 242
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
Q R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 243 AEAVQERQQYAW----LCS----QLRRKARLGSVS----LDLCDGDTGEPRYTLHVV--D 288
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
+ + +FI+P+ R EWLF +EG+ + S+ RLI V L SMD
Sbjct: 289 SPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESMD 348
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDL 429
IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED+
Sbjct: 349 HIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDV 403
|
|
| UNIPROTKB|F1PCU5 F1PCU5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 145/415 (34%), Positives = 208/415 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
DF S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 DFGSVDYWEKFFQQRG-KKAFEWYGSYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT M+F D +F V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 144 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + Q +EP SL F + K V F+ + + K E L
Sbjct: 184 HQVANSQDQVLEAEPRFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQGKPVRLESAERL 242
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
+ R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 243 AEAVRERQQYAW----LCS----QLYRKAGLGSVS----LDLCDGDTGEPRYTLHVV--D 288
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
+ + +FI+P+ R EWLF EEG+ + ++ RLI V L MD
Sbjct: 289 SPTVKPSRDNHFAIFIIPQGRETEWLFGMEEGRKQLAATAGFRRLITVALHRGQQYEGMD 348
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDL 429
IQ +LS V +LAP Q+PF+ G I R V HQ S L+G +VED+
Sbjct: 349 SIQAELSARVMELAPAGMPSQQQVPFLSVGGDIGVRTVQHQNCSPLSGSYVVEDV 403
|
|
| RGD|1311526 Mettl13 "methyltransferase like 13" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 510 (184.6 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 145/419 (34%), Positives = 214/419 (51%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L + L I P ++LV GCGNS LS
Sbjct: 10 EFGSADYWEKFFQHRG-KKTFEWYGTYLELCEVLHKYI-----KPKEKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT M+F D TF V+LDKG
Sbjct: 64 EQLYDVGYQDIMNIDISEVVIKQMKERNGSRRPHMSFLKMDMTHMEFPDATFQVVLDKGT 123
Query: 144 LDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E E + ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + Q S +EP SL F V K V F+ C + Q + L
Sbjct: 184 HQVTNSQDQVSEAEPRFSLPVFAFVMTKFRP-VPGSALQIFEL----CTQEQGKPVR--L 236
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
ES ++ + L+ A G + ++S +L G G+ ++ V
Sbjct: 237 ESADRLAEAVRERQHYAWLCSQLRRKAAG-LGSVS----LDLCSGDTGEPRYTLHVVDNP 291
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
A + S + +FI+P+ R EWLF EEG+ + S+ RL+ V L SM+
Sbjct: 292 AVKPSRDNHF--AIFIIPQGRETEWLFGMEEGRKQLASSAGFRRLVTVALHRGQRYDSME 349
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYEN 433
IQ +LS V +LAP Q+PF+ G I R V +A S+L+G ++ED+ E+
Sbjct: 350 SIQAELSARVMELAPAGMPPKQQVPFLSVGGDIGVRTVQQRAHSALSGDYVIEDVQGED 408
|
|
| FB|FBgn0032873 CG2614 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 1.7e-48, Sum P(3) = 1.7e-48
Identities = 83/221 (37%), Positives = 125/221 (56%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F + W++FF RG +FEWY E+ +L D + I P +IL+ GC
Sbjct: 4 LPKTREEFAQTDYWNEFFKKRG-EKAFEWYGEYLELCDQIHKYI-----KPADRILMLGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDV 137
GNS+LS +YD GF ITN+D S + + ML N + R +M++ MD T+M F DE+F V
Sbjct: 58 GNSKLSMDMYDTGFRDITNIDISPIAVKKMLELNAKSRPEMKFLQMDATAMTFPDESFSV 117
Query: 138 ILDKGGLDALM---EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLF---PK 191
LDKG LDAL EPE + N Y E+ R +++GG++V ++L + H+L L PK
Sbjct: 118 SLDKGTLDALFADDEPETRAVVEN-YFKEILRTMRNGGRYVGISLLQEHILNFLLDFLPK 176
Query: 192 FRFGWKMSVHAI------PQKSSSEP-SLQTFMVVADKENS 225
++ VH + +K++ + +L F+VVA K S
Sbjct: 177 HNCMLRI-VHCLGVEQANKEKNADDALTLPVFVVVATKFKS 216
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| fgenesh4_pg.C_LG_I002444 | hypothetical protein (779 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 659 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 6e-14 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 9e-10 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 4e-08 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-07 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-07 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 9e-06 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 3e-04 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 0.002 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 0.002 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 6e-14
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135
GCG L+E L G +T VD S +ML R R+ ++ V D + F DE+F
Sbjct: 4 GCGTGLLAEALARRGGARVTGVDLSP----EMLAL-ARKRAPRKFVVGDAEDLPFPDESF 58
Query: 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176
DV++ L L +PE + L E+ R+LK GGK V
Sbjct: 59 DVVVSSLVLHHLPDPE-------RALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 9e-10
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 72 ILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQF 130
+L GCG L+ L +T VD S V + + +D + D +
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 131 M-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176
DE+FDVI+ D + + ++L E +RLLK GG V
Sbjct: 62 EADESFDVII----SDPPLHHLVEDLA--RFLEEARRLLKPGGVLVL 102
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 22/131 (16%)
Query: 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKVVISDMLRRNV 112
R LISL+G P ++L CG ++ L + G + +D S ML
Sbjct: 40 RRALISLLGIK---PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDIS----ESMLEVA- 91
Query: 113 RDR------SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR 166
R++ ++ + V D ++ F D +FD + GL + + + + L E+ R
Sbjct: 92 REKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDID-------KALKEMYR 144
Query: 167 LLKSGGKFVCL 177
+LK GG+ + L
Sbjct: 145 VLKPGGRLLVL 155
|
Length = 238 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 66 SSPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDR--SDMRWR 121
++L GCG L+ L + G + +D S+ I + N + ++ +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKA-KENAKKLGYENVEFI 59
Query: 122 VMDMTSM---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178
D+ + Q D +FDV++ L+ L +P+ + L E+ R+LK GG +
Sbjct: 60 QGDIEELPQLQLEDNSFDVVISNEVLNHLPDPD-------KVLEEIIRVLKPGGVLIVSD 112
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 72 ILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131
IL GCG R+ L AG +T VD SK + R +R+ V D + F
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPFE 60
Query: 132 DETFD-VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 172
+ +FD VI LD L +L L E RLL+ GG
Sbjct: 61 EGSFDLVICAGLSLDYLSPKQLR-----ALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 9e-06
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126
P ++L GCG L+ L +T VD S ++ ++ R N + R +
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEML-ELARENAKLALGPRITFVQGD 59
Query: 127 SMQFMD--ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
+ +D E FD + GG L+E L + LLK GG+ V
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLLE----------LLDALASLLKPGGRLV 100
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 19/122 (15%)
Query: 69 PPQILVPGCGNSRLSEHLYDAG----FHGITNVDFSKVVISDMLRRNV---RDRSDMRWR 121
++L PG G+ AG G V+ + RR + +R
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVG---VELDPEAA-ALARRRLALAGLAPRVRVV 56
Query: 122 VMDMTSM-QFMDETFDVILDKGG----LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176
V D + + D +FD++L G +P+ L +++L+ RLLK GG V
Sbjct: 57 VGDARELLELPDGSFDLVL---GNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
Query: 177 LT 178
+T
Sbjct: 114 IT 115
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRN 111
R + LIG ++L CG L+ L + +T VDFS S+ML
Sbjct: 28 RRRAVKLIGVF---KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFS----SEMLE-V 79
Query: 112 VRDRS----DMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRL 167
+ +S ++ + D ++ F D +FD + GL + + + L E+ R+
Sbjct: 80 AKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKA-------LREMYRV 132
Query: 168 LKSGGKFVCL 177
LK GG+ V L
Sbjct: 133 LKPGGRLVIL 142
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 76 GCGNSRLSEHLYDAGFHG-ITNVDFSKVVISDMLRRNVRDRSD----MRWRVMDMTSMQF 130
GCG L L +A T VD S + R +R V+D +
Sbjct: 4 GCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDP 63
Query: 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 174
+FDV++ L L +P L ++RLLK GG
Sbjct: 64 --GSFDVVVASNVLHHLADPR-------AVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 659 | |||
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 100.0 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.77 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.77 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.73 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 99.71 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.7 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.65 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.65 | |
| PLN02823 | 336 | spermine synthase | 99.64 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.64 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 99.63 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 99.62 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.61 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.6 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.59 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.58 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.58 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.58 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.57 | |
| PLN02366 | 308 | spermidine synthase | 99.56 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.55 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.55 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.54 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.54 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.54 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.54 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.52 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.52 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.51 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.5 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.49 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.49 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.48 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.48 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.47 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.47 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.47 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.45 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.44 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.43 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.43 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.43 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.43 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.41 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.4 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.39 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.39 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.39 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.38 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.37 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.36 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.36 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.36 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.35 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.35 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.34 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.33 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.33 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.32 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.31 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.31 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.31 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.3 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.29 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.29 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.29 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.29 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.27 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.27 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.27 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.26 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.26 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.25 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.25 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.25 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.24 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.23 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.23 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.22 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.21 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.21 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.21 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.19 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.19 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.19 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.17 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.16 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.16 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.15 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.15 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.14 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.13 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.13 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.12 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.12 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.09 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.09 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.09 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.08 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.08 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.07 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.07 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.06 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.06 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.05 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.03 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.03 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.03 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.03 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.03 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.02 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.02 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.01 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.0 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.0 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.99 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.99 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.96 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.96 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.95 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.95 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.95 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.95 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.93 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.91 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.88 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.86 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.86 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.85 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.85 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.84 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.84 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.83 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.81 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.81 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.79 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.77 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.75 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.73 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.72 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.72 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.7 | |
| PLN02366 | 308 | spermidine synthase | 98.69 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.68 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.66 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.65 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.63 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.62 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.62 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.61 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.61 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.6 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.58 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.58 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.56 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.56 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.55 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.53 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.51 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.5 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.5 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.49 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.48 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.48 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.48 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.46 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.46 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.45 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 98.45 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.44 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.42 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.42 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.41 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.38 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.38 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.38 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.37 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.35 | |
| PLN02476 | 278 | O-methyltransferase | 98.35 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.34 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.33 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.3 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.29 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.29 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.28 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.28 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.27 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.26 | |
| PLN02823 | 336 | spermine synthase | 98.24 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.24 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.21 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.21 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.16 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.14 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.13 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.11 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.11 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.08 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.07 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.06 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.03 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.01 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.0 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.99 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.96 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.94 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.94 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.93 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.93 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.93 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.91 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 97.9 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.89 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.88 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.87 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.86 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.84 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.84 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.82 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.82 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.78 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.76 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.74 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.73 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.7 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.67 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.66 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.61 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.6 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.58 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.55 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.55 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.53 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.44 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.43 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.43 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.41 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.41 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.41 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.39 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.38 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.37 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.35 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.32 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.28 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.25 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.23 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.18 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 97.17 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.11 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.08 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 97.06 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.03 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.91 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.88 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 96.88 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 96.85 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 96.82 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 96.81 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 96.77 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 96.77 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 96.75 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 96.73 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 96.68 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 96.67 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.64 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 96.64 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.63 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.63 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 96.59 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.57 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 96.55 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.53 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 96.46 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 96.45 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.37 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.35 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.32 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 96.26 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 96.25 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 96.19 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 96.19 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 96.19 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 96.13 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 96.07 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.05 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 96.02 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 95.98 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.96 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 95.95 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 95.95 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 95.9 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 95.89 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 95.89 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.88 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 95.87 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 95.83 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 95.82 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 95.82 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 95.81 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 95.76 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 95.74 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 95.69 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 95.66 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.58 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 95.58 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.55 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 95.53 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 95.52 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 95.52 | |
| PLN02476 | 278 | O-methyltransferase | 95.47 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 95.44 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 95.4 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 95.35 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 95.32 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.24 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 95.23 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 95.21 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 95.17 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 95.14 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.13 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 95.11 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 95.05 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 95.02 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 95.01 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.0 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 94.92 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.9 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 94.9 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 94.89 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 94.79 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 94.78 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 94.75 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 94.75 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 94.72 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 94.72 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 94.71 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 94.71 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 94.63 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 94.55 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 94.53 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 94.42 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 94.41 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 94.39 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 94.34 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 94.06 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 94.03 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 93.97 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 93.91 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 93.87 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 93.86 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 93.83 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 93.82 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 93.8 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 93.6 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 93.6 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.44 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 93.4 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 93.39 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 93.36 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 93.33 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 93.26 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 93.23 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 93.13 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 93.0 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 92.88 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 92.73 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 92.62 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 92.47 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 92.45 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 92.42 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 92.31 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 92.26 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 92.23 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 92.21 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.16 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 92.1 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 91.97 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 91.94 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 91.88 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 91.86 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 91.71 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 91.63 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 91.61 | |
| PRK04266 | 226 | fibrillarin; Provisional | 91.6 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 91.55 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 91.52 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 91.39 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 91.34 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 91.29 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 91.27 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 91.14 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 91.11 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 91.04 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 90.87 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 90.82 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 90.81 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 90.77 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 90.76 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 90.67 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 90.61 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 90.58 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 90.35 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 90.18 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 90.12 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 90.03 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 90.03 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 89.95 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 89.89 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 89.36 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 89.29 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 89.14 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 88.94 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 88.93 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 88.91 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 88.9 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 88.75 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 88.71 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 88.66 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 88.62 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 88.62 | |
| PRK13699 | 227 | putative methylase; Provisional | 88.49 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 88.35 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 88.2 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 87.86 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 87.8 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 87.74 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 87.64 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 87.56 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 87.48 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 87.31 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 87.21 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 87.11 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 86.79 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 86.77 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 86.56 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 86.47 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 85.89 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 85.87 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 85.64 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 85.05 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 84.98 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 84.42 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 84.02 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 83.99 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 83.91 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 83.74 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 83.54 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 83.2 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 83.17 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 83.01 | |
| PHA01634 | 156 | hypothetical protein | 82.88 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 82.74 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 82.48 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 82.18 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 81.68 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 81.57 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 81.08 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 80.99 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 80.83 | |
| PHA01634 | 156 | hypothetical protein | 80.82 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 80.43 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 80.11 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 80.05 |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=422.44 Aligned_cols=385 Identities=39% Similarity=0.589 Sum_probs=336.0
Q ss_pred hhhcccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCC-eEEEECCCcchHHHHHHHcCCCeEEE
Q 006149 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPP-QILVPGCGNSRLSEHLYDAGFHGITN 96 (659)
Q Consensus 18 lp~~~~~f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~-~ILDiGCG~G~~s~~La~~g~~~Vtg 96 (659)
+|++..+|.+..||+.+|..++ ..+++||++|..++..+.+++. +.. ++|.+|||++.++..+++.|+.+|+.
T Consensus 3 ~p~~~~~~~s~~~wd~rf~~rg-~~~~ewY~~~l~l~~~i~~~~~-----p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~ 76 (482)
T KOG2352|consen 3 LPQEQLSFGSVVYWDKRFQPRG-SDPFEWYGALLSLSGSIMKYLS-----PSDFKILQLGCGNSELSEHLYKNGFEDITN 76 (482)
T ss_pred CcccccccCcchhhhhhccccC-CChHHHHHHHHHHHHHHHHhhc-----hhhceeEeecCCCCHHHHHHHhcCCCCcee
Confidence 7899999999999999999996 7999999999999999999996 445 99999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchH---HHHHHHHHHHhccccCeE
Q 006149 97 VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHK---LGNQYLSEVKRLLKSGGK 173 (659)
Q Consensus 97 vD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~---~~~~~l~ei~rvLkpGG~ 173 (659)
+|+|+.+++.|..++....+.+.+..+|+..+.|++++||+|+++|++|++..++.... .+..++.++.|+|++||+
T Consensus 77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk 156 (482)
T KOG2352|consen 77 IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGK 156 (482)
T ss_pred ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCE
Confidence 99999999999998877778899999999999999999999999999999988775544 478889999999999999
Q ss_pred EEEEEcCCchhhcchhhhhccCceEEEeeeCCCCCCCCCCccEEEEEEecCCccccccccccccccccCCcchHHHHHHH
Q 006149 174 FVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEA 253 (659)
Q Consensus 174 lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~ 253 (659)
++.+++.+
T Consensus 157 ~~svtl~~------------------------------------------------------------------------ 164 (482)
T KOG2352|consen 157 YISVTLVQ------------------------------------------------------------------------ 164 (482)
T ss_pred EEEEEeee------------------------------------------------------------------------
Confidence 99888764
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhccccccccccCCCceeEEEeCCCCCCeeEEEEEEEeCCCCCCCCcccEEEEEeeC
Q 006149 254 LESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPK 333 (659)
Q Consensus 254 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~y~~~v~D~~~~~~~~~~~~a~fiVP~ 333 (659)
+||+
T Consensus 165 ----------------------------------------------------------------------------~vp~ 168 (482)
T KOG2352|consen 165 ----------------------------------------------------------------------------VVPQ 168 (482)
T ss_pred ----------------------------------------------------------------------------eccC
Confidence 9999
Q ss_pred CCccccccCChhhHHHHHHhcCCCEEEEEEeCCCCCCCc--hHHHHHhhhHHHHhcCCCCCCCCCCccEEecCCCcceee
Q 006149 334 TRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASAS--MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRN 411 (659)
Q Consensus 334 gre~ewlfst~eG~~~l~~sa~~~Rli~v~l~~~~~~~~--~~~v~~el~~~v~~l~p~~~~~~~~ip~l~~~~~i~~r~ 411 (659)
||+++|+|+++.|++++..+++..||++|++|+++.+.. +++++.++++.+..+.|+++++..+.|+++.|++++
T Consensus 169 ~r~~e~~~~~p~G~~~~~~~s~~~~l~~v~l~~gq~~~~~~~~~~~~~~s~~~~~l~~~g~~~~~q~~~ls~g~d~~--- 245 (482)
T KOG2352|consen 169 GRKPEWLFGSPGGSKQMNVSSSGERLAIVALHRGQQYSTPQEDEVQDPLSPFRRQLDPKGEPTQQQREILSIGEDVG--- 245 (482)
T ss_pred CCCeeeeecCccchhhhhhhccCcceEEEEeccCccccchHHhhhccccccceeecccccCChhhhhcccccccccc---
Confidence 999999999999999999999999999999999999999 899999999999999999998888999999875533
Q ss_pred EEEEEecCcccCEEEEEeeeccCCCCcccCCCCcCceeEEEEeccCCCceeceEEeeccCCCCCcchhhhhhhccccccc
Q 006149 412 VVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKS 491 (659)
Q Consensus 412 ~~~~~~s~~~g~~~Vedv~~e~~~~~~~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~~ 491 (659)
.|||.+..|.|+||||+.-.
T Consensus 246 -------------------------------------~~~l~~~~n~nv~q~~~k~~----------------------- 265 (482)
T KOG2352|consen 246 -------------------------------------VRRLPPCGNMNVVQSEAKKD----------------------- 265 (482)
T ss_pred -------------------------------------cccccCCCCcceecCchhcc-----------------------
Confidence 57777777999999995110
Q ss_pred cccCcccCCCCCCccceecCCccchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEE
Q 006149 492 KRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAV 571 (659)
Q Consensus 492 k~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~V 571 (659)
+.-||+|+||++|++|++|+...... ..+....+||||+|||.||.|||.++|..++++|
T Consensus 266 ------------------r~~~l~s~~h~~m~~g~aL~~n~~~~--~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~v 325 (482)
T KOG2352|consen 266 ------------------RKPELASQYHQMMIGGLALIMNRPPQ--KLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAV 325 (482)
T ss_pred ------------------cCcccCcchhhhhhccceeccccCch--hccccCcEEEEecCCCccccceeeecCccceeEE
Confidence 12289999999999999998775532 3467789999999999999999999999999999
Q ss_pred ecChhHHHHHHhhcCCCCCCCeeEE----------------------------------------ecccchhHHHHHHHh
Q 006149 572 ELDLTMLNLAEDYFGFTQDKSLKVF----------------------------------------NHLFCLQLEEDVNLV 611 (659)
Q Consensus 572 EiDp~V~~vA~~~Fgl~~d~rl~vf----------------------------------------~~l~~~~f~~~~~~~ 611 (659)
||||+|+++|++||||.++.|.+|. ....+..|...+|.+
T Consensus 326 e~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~ 405 (482)
T KOG2352|consen 326 EIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMI 405 (482)
T ss_pred EEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhc
Confidence 9999999999999999987777433 113467788899999
Q ss_pred hccCCCCcEEEecCchHHH----HHHHhhcc-CCcc
Q 006149 612 LFGLSSESCIKDNSFPEAA----VQLGKLVK-FQHL 642 (659)
Q Consensus 612 Lf~~~~~g~~~~n~~~~~~----~~l~~~~~-f~~~ 642 (659)
| .|.|++..|.-.... ..+.++.+ |++.
T Consensus 406 l---~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l 438 (482)
T KOG2352|consen 406 L---PPRGMFIINLVTRNSSFKDEVLMNLAKVFPQL 438 (482)
T ss_pred c---CccceEEEEEecCCcchhHHHHHhhhhhhHHH
Confidence 9 999999999832222 23455555 6543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-18 Score=176.30 Aligned_cols=137 Identities=22% Similarity=0.301 Sum_probs=114.0
Q ss_pred eEEEEeccCCCceeceEEeeccCCCCCcchhhhhhhccccccccccCcccCCCCCCccceecCCccchHHHHHHHHHHhh
Q 006149 449 FRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTL 528 (659)
Q Consensus 449 ~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~l 528 (659)
+|.|.|. .+.+||.+.+. ||..|.++|+++|++++.+
T Consensus 27 ~R~L~f~--~~~~qs~~~~~-----------------------------------------~P~~l~~~y~~~m~~~l~~ 63 (262)
T PRK04457 27 VRSLHLG--SDTVQSSMRID-----------------------------------------DPSELELAYTRAMMGFLLF 63 (262)
T ss_pred EEEEEEC--CCcceeeeecC-----------------------------------------CcccccCHHHHHHHHHHhc
Confidence 8999994 56899998875 6788999999999976655
Q ss_pred hhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-CCCeeEE-----------
Q 006149 529 ISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVF----------- 596 (659)
Q Consensus 529 ~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-d~rl~vf----------- 596 (659)
. +.|++||+||+|+|++++++++++|..+|++|||||+|+++|++||+++. ++|++++
T Consensus 64 ~----------~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~ 133 (262)
T PRK04457 64 N----------PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH 133 (262)
T ss_pred C----------CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence 2 45789999999999999999999999999999999999999999999875 4777332
Q ss_pred ------------------ecccchhHHHHHHHhhccCCCCcEEEecCchHH---HHHHHhhcc-CCc
Q 006149 597 ------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNSFPEA---AVQLGKLVK-FQH 641 (659)
Q Consensus 597 ------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~~~~~---~~~l~~~~~-f~~ 641 (659)
.++.+.+|++.|+++| +|+|+++.|.+... ...++++.+ |++
T Consensus 134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L---~pgGvlvin~~~~~~~~~~~l~~l~~~F~~ 197 (262)
T PRK04457 134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNAL---SSDGIFVVNLWSRDKRYDRYLERLESSFEG 197 (262)
T ss_pred CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhc---CCCcEEEEEcCCCchhHHHHHHHHHHhcCC
Confidence 2356789999999999 99999999986433 334666655 764
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-18 Score=171.56 Aligned_cols=120 Identities=25% Similarity=0.464 Sum_probs=105.5
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFM 131 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~ 131 (659)
+..+...+.. .++.+|||+|||||.++..+++. |.++|+++|+|+.|++.++++....+ .+++|+++|+.++||+
T Consensus 40 r~~~i~~~~~---~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~ 116 (238)
T COG2226 40 RRALISLLGI---KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFP 116 (238)
T ss_pred HHHHHHhhCC---CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCC
Confidence 4445555544 47899999999999999999987 66799999999999999999887654 3499999999999999
Q ss_pred CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
|++||+|.+..+|.++.+.+ ++|+|++|+|||||+++|.+++++.
T Consensus 117 D~sFD~vt~~fglrnv~d~~-------~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDID-------KALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred CCccCEEEeeehhhcCCCHH-------HHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 99999999999999998754 9999999999999999999998754
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=156.29 Aligned_cols=167 Identities=29% Similarity=0.461 Sum_probs=125.5
Q ss_pred CCCHhhHHHHHhhcC-----CCCcc-ccccchhHHHHHHHHhhCCC-----CCCCCCeEEEECCCcchHHHHHHHcCCCe
Q 006149 25 FTSKENWDKFFTIRG-----IGDSF-EWYAEWPQLRDPLISLIGAP-----TSSPPPQILVPGCGNSRLSEHLYDAGFHG 93 (659)
Q Consensus 25 f~~~eyWd~~y~~~~-----~~~~f-ewy~~~~~l~~~l~~~l~~~-----~~~~~~~ILDiGCG~G~~s~~La~~g~~~ 93 (659)
.+.++||+..|.... +++.- -||++-. ...+.+|+... -.....+|||+|||||.+...|++.|+..
T Consensus 15 LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~a--e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~ 92 (227)
T KOG1271|consen 15 LGTKSYWDAAYELELTNFREHGDEGEVWFGEDA--EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQS 92 (227)
T ss_pred cchHHHHHHHHHHHHhhcccCCCccceecCCcH--HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCC
Confidence 578999999998762 11111 2888633 33344444321 02234499999999999999999999854
Q ss_pred -EEEEcCCHHHHHHHHHHhhcCC-C-CcEEEEeecCCCCCCCCcccEEEecccccccCCcccchH-HHHHHHHHHHhccc
Q 006149 94 -ITNVDFSKVVISDMLRRNVRDR-S-DMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHK-LGNQYLSEVKRLLK 169 (659)
Q Consensus 94 -VtgvD~S~~~i~~~~~~~~~~~-~-~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~-~~~~~l~ei~rvLk 169 (659)
.+|+|+|+.+++-|+..+.+.. + .|+|.+.|+.+..+..+.||+|+++|+++++.-..+.+. ....++..+.++|+
T Consensus 93 ~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~ 172 (227)
T KOG1271|consen 93 KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLS 172 (227)
T ss_pred CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccC
Confidence 9999999999997766654444 3 399999999998888899999999999999864322222 24789999999999
Q ss_pred cCeEEEEEEcCCchhhcchhhhhccC
Q 006149 170 SGGKFVCLTLAESHVLGLLFPKFRFG 195 (659)
Q Consensus 170 pGG~lvi~~~~~~~~~~~l~~~~~~~ 195 (659)
|||+|+|.+. +|...++.+.|..+
T Consensus 173 ~~gifvItSC--N~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 173 PGGIFVITSC--NFTKDELVEEFENF 196 (227)
T ss_pred CCcEEEEEec--CccHHHHHHHHhcC
Confidence 9999999987 46667788877554
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=164.47 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=87.7
Q ss_pred cchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC----
Q 006149 514 LASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ---- 589 (659)
Q Consensus 514 L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~---- 589 (659)
..+.||+++++ +++++ +++|++|||||||.|++.+.+.+|.+-.++++|||||.|+++||+||+.+.
T Consensus 58 de~~yhEml~h-~~~~a--------h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~ 128 (282)
T COG0421 58 DEFIYHEMLAH-VPLLA--------HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD 128 (282)
T ss_pred hhHHHHHHHHh-chhhh--------CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC
Confidence 45679988876 44444 378899999999999999999999998899999999999999999998886
Q ss_pred CCCeeEE-----------------------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 590 DKSLKVF-----------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 590 d~rl~vf-----------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
|||+++. ..||+.+||+.|+++| +++|++++|+
T Consensus 129 dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L---~~~Gi~v~q~ 190 (282)
T COG0421 129 DPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRAL---KEDGIFVAQA 190 (282)
T ss_pred CCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhc---CCCcEEEEec
Confidence 8999433 4599999999999999 9999999994
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-17 Score=165.86 Aligned_cols=118 Identities=26% Similarity=0.457 Sum_probs=88.9
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMD 132 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~ 132 (659)
.+.+.+.. .++.+|||+|||||.++..+++. + ...|+++|+|+.|++.++++....+ .+++++++|+.++|+++
T Consensus 38 ~~~~~~~~---~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 38 KLIKLLGL---RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD 114 (233)
T ss_dssp HHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred HHHhccCC---CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence 34555543 57889999999999999999886 3 3689999999999999998876543 58999999999999999
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
++||+|++...++++.+.. ++++|++|+|||||++++++++.+.
T Consensus 115 ~sfD~v~~~fglrn~~d~~-------~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDRE-------RALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp T-EEEEEEES-GGG-SSHH-------HHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred CceeEEEHHhhHHhhCCHH-------HHHHHHHHHcCCCeEEEEeeccCCC
Confidence 9999999999999987644 8999999999999999999997553
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=152.41 Aligned_cols=140 Identities=19% Similarity=0.293 Sum_probs=104.3
Q ss_pred hhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHH
Q 006149 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 108 (659)
Q Consensus 29 eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~ 108 (659)
+||+++|+.. ...|... .....+.+++......++.+|||+|||.|..+..|+++|+ +|||+|+|+.+++.+.
T Consensus 1 ~~Wd~ry~~~----~~~w~~~--~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 1 EFWHERWQEG----QIGFHQS--EVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFF 73 (213)
T ss_pred ChHHHHHhcC----CCCCccC--CCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHH
Confidence 4899999765 2345422 1122233333221112567999999999999999999999 8999999999999764
Q ss_pred HHhhc-------------CCCCcEEEEeecCCCCCC-CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEE
Q 006149 109 RRNVR-------------DRSDMRWRVMDMTSMQFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 174 (659)
Q Consensus 109 ~~~~~-------------~~~~i~~~~~D~~~l~~~-~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~l 174 (659)
+.+.. ...+++++++|+.+++.. .+.||.|++.++++++.... +..+++.+.++|||||++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~-----R~~~~~~l~~lLkpgG~~ 148 (213)
T TIGR03840 74 AENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEM-----RQRYAAHLLALLPPGARQ 148 (213)
T ss_pred HHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHH-----HHHHHHHHHHHcCCCCeE
Confidence 43211 134689999999998643 46799999999999885443 789999999999999998
Q ss_pred EEEEcC
Q 006149 175 VCLTLA 180 (659)
Q Consensus 175 vi~~~~ 180 (659)
+++++.
T Consensus 149 ll~~~~ 154 (213)
T TIGR03840 149 LLITLD 154 (213)
T ss_pred EEEEEE
Confidence 887764
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=156.36 Aligned_cols=118 Identities=25% Similarity=0.339 Sum_probs=98.6
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhh----cCCCCcEEEEeecCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNV----RDRSDMRWRVMDMTSMQ 129 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~----~~~~~i~~~~~D~~~l~ 129 (659)
.+.+++.. .++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.++++.. ....+++++++|+.++|
T Consensus 64 ~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 64 MAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 34445543 46789999999999999988875 3 3589999999999998876642 12357999999999999
Q ss_pred CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 130 ~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
+++++||+|++..+++++.++. .+++++.|+|||||++++.++..+.
T Consensus 141 ~~~~sfD~V~~~~~l~~~~d~~-------~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVVDRL-------KAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred CCCCCEeEEEEecccccCCCHH-------HHHHHHHHHcCcCcEEEEEECCCCC
Confidence 9999999999999999987644 8999999999999999999987543
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-15 Score=160.01 Aligned_cols=116 Identities=15% Similarity=0.210 Sum_probs=92.2
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d 590 (659)
.+.||++|++. +++. +++|++|||||+|+|++++++.++.+..+|++|||||+|+++||+||++. +|
T Consensus 86 e~~YhE~l~h~-~l~~--------~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~d 156 (336)
T PLN02823 86 EFVYHESLVHP-ALLH--------HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCD 156 (336)
T ss_pred HHHHHHHHHhH-HHhh--------CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccC
Confidence 34699999874 3433 36789999999999999999999887779999999999999999999876 47
Q ss_pred CCeeEE-------------------------------ecccchhHHH-HHHHhhccCCCCcEEEecCc-------hHH-H
Q 006149 591 KSLKVF-------------------------------NHLFCLQLEE-DVNLVLFGLSSESCIKDNSF-------PEA-A 630 (659)
Q Consensus 591 ~rl~vf-------------------------------~~l~~~~f~~-~~~~~Lf~~~~~g~~~~n~~-------~~~-~ 630 (659)
+|++++ .+||+.+||+ .|+++| +++|+++.|.- +.. .
T Consensus 157 prv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L---~p~Gvlv~q~~s~~~~~~~~~~~ 233 (336)
T PLN02823 157 KRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKL---NPGGIFVTQAGPAGILTHKEVFS 233 (336)
T ss_pred CceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhc---CCCcEEEEeccCcchhccHHHHH
Confidence 787332 2478999999 999999 99999999862 222 3
Q ss_pred HHHHhhcc-CCcc
Q 006149 631 VQLGKLVK-FQHL 642 (659)
Q Consensus 631 ~~l~~~~~-f~~~ 642 (659)
..++++.+ |+++
T Consensus 234 ~i~~tl~~vF~~v 246 (336)
T PLN02823 234 SIYNTLRQVFKYV 246 (336)
T ss_pred HHHHHHHHhCCCE
Confidence 35566656 8865
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.64 E-value=6e-16 Score=133.49 Aligned_cols=95 Identities=29% Similarity=0.513 Sum_probs=81.1
Q ss_pred EEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCccc
Q 006149 73 LVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPEL 152 (659)
Q Consensus 73 LDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~ 152 (659)
||+|||+|..+..|++.+..+|+++|+++.+++.++++.. ..++.+.++|+.++|+++++||+|++.++++++.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--- 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK--NEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--- 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT--TSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc--ccCchheeehHHhCccccccccccccccceeeccC---
Confidence 8999999999999999955699999999999998877663 34566999999999999999999999999999832
Q ss_pred chHHHHHHHHHHHhccccCeEEEE
Q 006149 153 GHKLGNQYLSEVKRLLKSGGKFVC 176 (659)
Q Consensus 153 ~~~~~~~~l~ei~rvLkpGG~lvi 176 (659)
..++++++.|+|||||++++
T Consensus 76 ----~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 ----PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----HHHHHHHHHHHEEEEEEEEE
T ss_pred ----HHHHHHHHHHHcCcCeEEeC
Confidence 56999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=156.21 Aligned_cols=97 Identities=8% Similarity=-0.011 Sum_probs=80.5
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d 590 (659)
++-||++|+| ++|++ +++|+||||||+|-|+..|.+.+| |. +|+.||||++|+++||+||+-- +|
T Consensus 55 EfiYHEmLvH-ppl~~--------h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~D 123 (262)
T PRK00536 55 LHIESELLAH-MGGCT--------KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNN 123 (262)
T ss_pred hhhHHHHHHH-HHHhh--------CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcC
Confidence 5779999998 56655 489999999999955555555555 44 9999999999999999999542 68
Q ss_pred CCeeEE----------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 591 KSLKVF----------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 591 ~rl~vf----------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
||++++ +.+++.+||+.|+++| +++|+++.|+
T Consensus 124 pRv~l~~~~~~~~~~~fDVIIvDs~~~~~fy~~~~~~L---~~~Gi~v~Qs 171 (262)
T PRK00536 124 KNFTHAKQLLDLDIKKYDLIICLQEPDIHKIDGLKRML---KEDGVFISVA 171 (262)
T ss_pred CCEEEeehhhhccCCcCCEEEEcCCCChHHHHHHHHhc---CCCcEEEECC
Confidence 888554 4478999999999999 9999999988
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=99.62 E-value=9e-16 Score=157.51 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d 590 (659)
...||++|++..++ . +++|++|||||+|+|++++.+.++.+..+|++|||||.|+++|++||+.. +|
T Consensus 59 e~~y~e~l~h~~~~-~--------~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d 129 (246)
T PF01564_consen 59 EFIYHEMLVHPPLL-L--------HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDD 129 (246)
T ss_dssp HHHHHHHHHHHHHH-H--------SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGS
T ss_pred hHHHHHHHhhhHhh-c--------CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCC
Confidence 47899999874433 3 36899999999999999999999987789999999999999999999763 47
Q ss_pred CCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 591 KSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 591 ~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+|++++ ..||+.+||+.|+++| +++|+++.|.
T Consensus 130 ~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L---~~~Gv~v~~~ 191 (246)
T PF01564_consen 130 PRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRL---KPDGVLVLQA 191 (246)
T ss_dssp TTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHE---EEEEEEEEEE
T ss_pred CceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhc---CCCcEEEEEc
Confidence 788333 2489999999999999 9999999986
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-15 Score=148.41 Aligned_cols=141 Identities=20% Similarity=0.300 Sum_probs=105.3
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHH
Q 006149 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (659)
Q Consensus 27 ~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~ 106 (659)
+.++|++.|... . ..|... .....+.+++......++.+|||+|||.|..+..|++.|+ +|+|||+|+.+|+.
T Consensus 2 ~~~~Wd~rw~~~--~--~~~~~~--~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~ 74 (218)
T PRK13255 2 DPDFWHEKWAEN--Q--IGFHQE--EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQ 74 (218)
T ss_pred CHhHHHHHHcCC--C--CCCCCC--CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHH
Confidence 467999999876 2 334322 2333344444321123567999999999999999999998 89999999999997
Q ss_pred HHHHhhc-------------CCCCcEEEEeecCCCCCC-CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCe
Q 006149 107 MLRRNVR-------------DRSDMRWRVMDMTSMQFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 172 (659)
Q Consensus 107 ~~~~~~~-------------~~~~i~~~~~D~~~l~~~-~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG 172 (659)
+.+.... ...++++.++|+.+++.. .+.||+|++..+++++.... +.++++.+.++|+|||
T Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~-----R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 75 FFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEM-----RERYVQQLAALLPAGC 149 (218)
T ss_pred HHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHH-----HHHHHHHHHHHcCCCC
Confidence 6443211 135689999999998543 36899999999999986443 7899999999999999
Q ss_pred EEEEEEc
Q 006149 173 KFVCLTL 179 (659)
Q Consensus 173 ~lvi~~~ 179 (659)
+++++++
T Consensus 150 ~~~l~~~ 156 (218)
T PRK13255 150 RGLLVTL 156 (218)
T ss_pred eEEEEEE
Confidence 7666554
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=145.99 Aligned_cols=143 Identities=15% Similarity=0.259 Sum_probs=110.3
Q ss_pred CCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHH
Q 006149 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (659)
Q Consensus 26 ~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~ 105 (659)
.+.+||+++|++. ... |... .....|.+++......++.+||++|||.|..+.+|++.|+ +|+|+|+|+.+|+
T Consensus 7 ~~~~fW~~rw~~~--~~~--f~~~--~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~ 79 (226)
T PRK13256 7 NNNQYWLDRWQND--DVG--FCQE--SPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVL 79 (226)
T ss_pred CCHHHHHHHHhcC--CCC--CccC--CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHH
Confidence 4678999999976 233 4332 1222333443332223568999999999999999999999 8999999999999
Q ss_pred HHHHHhh-------------cCCCCcEEEEeecCCCCCC---CCcccEEEecccccccCCcccchHHHHHHHHHHHhccc
Q 006149 106 DMLRRNV-------------RDRSDMRWRVMDMTSMQFM---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 169 (659)
Q Consensus 106 ~~~~~~~-------------~~~~~i~~~~~D~~~l~~~---~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLk 169 (659)
.+.+.+. ..+.++++.++|+.+++.. .+.||+|++.++|.++.... +.++.+.+.++|+
T Consensus 80 ~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~-----R~~Y~~~l~~lL~ 154 (226)
T PRK13256 80 SFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDL-----RTNYAKMMLEVCS 154 (226)
T ss_pred HHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHH-----HHHHHHHHHHHhC
Confidence 8766431 1235799999999998632 26899999999999996543 8899999999999
Q ss_pred cCeEEEEEEcC
Q 006149 170 SGGKFVCLTLA 180 (659)
Q Consensus 170 pGG~lvi~~~~ 180 (659)
|||.++++++.
T Consensus 155 pgg~llll~~~ 165 (226)
T PRK13256 155 NNTQILLLVME 165 (226)
T ss_pred CCcEEEEEEEe
Confidence 99999998874
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=156.15 Aligned_cols=107 Identities=19% Similarity=0.322 Sum_probs=93.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||||||+|.++..|++....+|+|+|+|+.+++.++++....+ ++++++++|+.++++++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 4678999999999999999998633499999999999998877665443 47999999999999999999999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+|+.+. .++++++.++|||||++++.++.
T Consensus 197 ~h~~d~-------~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 197 EHMPDK-------RKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hccCCH-------HHHHHHHHHHcCCCcEEEEEEec
Confidence 998764 48999999999999999998865
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=143.94 Aligned_cols=112 Identities=24% Similarity=0.365 Sum_probs=92.8
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcc
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETF 135 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sF 135 (659)
+.+.+.. .++.+|||+|||+|..+..|++.|. +|+|+|+|+.+++.+++.....+ .++++.++|+.+++++ ++|
T Consensus 22 l~~~l~~---~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 96 (197)
T PRK11207 22 VLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEY 96 (197)
T ss_pred HHHhccc---CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCc
Confidence 4455543 3568999999999999999999987 99999999999998877665544 4689999999888774 679
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
|+|++..+++++...+ ...+++++.++|+|||++++++
T Consensus 97 D~I~~~~~~~~~~~~~-----~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 97 DFILSTVVLMFLEAKT-----IPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred CEEEEecchhhCCHHH-----HHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999998875433 6799999999999999976654
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=144.26 Aligned_cols=132 Identities=21% Similarity=0.338 Sum_probs=107.3
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CC------CeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeec
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF------HGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDM 125 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~------~~VtgvD~S~~~i~~~~~~~~~~~----~~i~~~~~D~ 125 (659)
+...+.. .++.++||++||||.++..+.+. +. ++|+.+|+++.|+...+++..+.. ..+.|+++|+
T Consensus 92 ~v~~L~p---~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 92 FVSKLGP---GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred hhhccCC---CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 4445543 67799999999999999888876 22 689999999999999988875532 3589999999
Q ss_pred CCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEE
Q 006149 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 200 (659)
Q Consensus 126 ~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~ 200 (659)
.++||++.+||.....+.+.++.+.+ +++++++|+|||||+|.|.+++. ...+.+..+-..|...+
T Consensus 169 E~LpFdd~s~D~yTiafGIRN~th~~-------k~l~EAYRVLKpGGrf~cLeFsk--v~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 169 EDLPFDDDSFDAYTIAFGIRNVTHIQ-------KALREAYRVLKPGGRFSCLEFSK--VENEPLKWFYDQYSFDV 234 (296)
T ss_pred ccCCCCCCcceeEEEecceecCCCHH-------HHHHHHHHhcCCCcEEEEEEccc--cccHHHHHHHHhhhhhh
Confidence 99999999999999999999988765 99999999999999999999973 33334455544454443
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=129.31 Aligned_cols=106 Identities=28% Similarity=0.388 Sum_probs=86.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhh--cCCCCcEEEEeec-CCCCCCCCcccEEEecc-
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDM-TSMQFMDETFDVILDKG- 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~--~~~~~i~~~~~D~-~~l~~~~~sFDvVi~~g- 142 (659)
|+.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++.. ...++++++++|+ ..... .+.||+|++.+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 4689999999999999999993 44589999999999999988873 3347999999999 33333 35799999999
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+++++...+ ...++++.+.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~----~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLD----ERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHH----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchh----HHHHHHHHHHHhcCCCcEEEEEE
Confidence 666544321 26789999999999999999876
|
... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=145.10 Aligned_cols=141 Identities=26% Similarity=0.379 Sum_probs=106.9
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHH
Q 006149 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (659)
Q Consensus 27 ~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~ 106 (659)
+.+||++.|++. ..+|......+.+...+.. +.. .++.+||++|||.|.....|++.|+ +|+|+|+|+.+|++
T Consensus 2 ~~~~W~~~w~~~--~~~w~~~~~~p~L~~~~~~-l~~---~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~ 74 (218)
T PF05724_consen 2 DPEFWEERWQEG--QTPWDQGEPNPALVEYLDS-LAL---KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQ 74 (218)
T ss_dssp HHHHHHHHHHTT----TT--TTSTHHHHHHHHH-HTT---STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHH
T ss_pred CHHHHHHHHhcC--CCCCCCCCCCHHHHHHHHh-cCC---CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHH
Confidence 368999999987 3444444445566655555 322 4677999999999999999999998 99999999999998
Q ss_pred HHHHhhc-------------CCCCcEEEEeecCCCCCCC-CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCe
Q 006149 107 MLRRNVR-------------DRSDMRWRVMDMTSMQFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 172 (659)
Q Consensus 107 ~~~~~~~-------------~~~~i~~~~~D~~~l~~~~-~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG 172 (659)
+.+.+.. ...+|++.++|+.+++... ++||+|++.++|.++.... +.++.+.+.++|+|||
T Consensus 75 ~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~-----R~~Ya~~l~~ll~p~g 149 (218)
T PF05724_consen 75 AFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEM-----RERYAQQLASLLKPGG 149 (218)
T ss_dssp HHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGG-----HHHHHHHHHHCEEEEE
T ss_pred HHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHH-----HHHHHHHHHHHhCCCC
Confidence 8655432 1136899999999986433 5899999999999997554 8899999999999999
Q ss_pred EEEEEEc
Q 006149 173 KFVCLTL 179 (659)
Q Consensus 173 ~lvi~~~ 179 (659)
.++++++
T Consensus 150 ~~lLi~l 156 (218)
T PF05724_consen 150 RGLLITL 156 (218)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 9555554
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-14 Score=148.81 Aligned_cols=99 Identities=19% Similarity=0.284 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC----CCC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl----~~d 590 (659)
.+.||++|++ ++++. +++|++||+||+|+|++++.+.++.+..+|++|||||.|+++||+||+. .+|
T Consensus 74 e~~Y~e~l~h-~~l~~--------~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~d 144 (308)
T PLN02366 74 ECAYQEMITH-LPLCS--------IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDD 144 (308)
T ss_pred HHHHHHHHHH-HHHhh--------CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCC
Confidence 5789997776 55543 3678999999999999999999885557999999999999999999964 256
Q ss_pred CCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 591 KSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 591 ~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+|++++ .+|++.+|++.|+++| +|+|+++.|+
T Consensus 145 pRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L---~pgGvlv~q~ 206 (308)
T PLN02366 145 PRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARAL---RPGGVVCTQA 206 (308)
T ss_pred CceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhc---CCCcEEEECc
Confidence 777332 2478899999999999 9999999876
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-14 Score=141.83 Aligned_cols=125 Identities=23% Similarity=0.315 Sum_probs=101.1
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeec
Q 006149 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM 125 (659)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~ 125 (659)
.....+..+...+.. .++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.++++..... +++.++++|+
T Consensus 29 ~~~~~~~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~ 105 (231)
T TIGR02752 29 RHKKWRKDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA 105 (231)
T ss_pred chHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech
Confidence 333344455666654 56789999999999999999876 3 3589999999999998877764433 5799999999
Q ss_pred CCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 126 ~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
.++++++++||+|++..+++++.+. .++++++.++|+|||++++.+...+.
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 106 MELPFDDNSFDYVTIGFGLRNVPDY-------MQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred hcCCCCCCCccEEEEecccccCCCH-------HHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 9988888999999999988887654 48999999999999999998876543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.2e-15 Score=146.02 Aligned_cols=106 Identities=25% Similarity=0.403 Sum_probs=98.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||-|.++..||+.|+ +|||+|+++.+|+.++.++.+.+-.+.|.+..+.++....++||+|+|..++.|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 689999999999999999999996 9999999999999999888777777889999999887666899999999999999
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++++ .++..+.+++||||.+++++..+
T Consensus 138 ~dp~-------~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 138 PDPE-------SFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred CCHH-------HHHHHHHHHcCCCcEEEEecccc
Confidence 9876 89999999999999999999874
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.5e-14 Score=136.99 Aligned_cols=130 Identities=25% Similarity=0.389 Sum_probs=99.0
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHH
Q 006149 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (659)
Q Consensus 27 ~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~ 106 (659)
..+||.+.|... ..+.. +.+.++. .++.++||+|||.|+.+..|+..|+ +|+++|+|+.+++.
T Consensus 5 ~~~y~~kky~~~---------~~hs~----v~~a~~~---~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~ 67 (192)
T PF03848_consen 5 PEDYFHKKYGLT---------PTHSE----VLEAVPL---LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEK 67 (192)
T ss_dssp STTHHHHHHTB-------------HH----HHHHCTT---S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred HHHHHHHhhCCC---------CCcHH----HHHHHhh---cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 356777766543 11222 4444443 3568999999999999999999999 99999999999999
Q ss_pred HHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 107 MLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 107 ~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.+.+....-.+++.+.|+.+..++ +.||+|++..+++++..+. +.++++.+...++|||++++.+.
T Consensus 68 l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~-----~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 68 LQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQREL-----RPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGG-----HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHH-----HHHHHHHHHhhcCCcEEEEEEEe
Confidence 8777766667799999999998875 7899999998999886554 78999999999999999988765
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.2e-14 Score=145.74 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=89.9
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-----CCC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----FTQ 589 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-----l~~ 589 (659)
.+.||++|++ ++++. +++|++||+||+|+|++++.+.++.+..+|++|||||.|+++|++||. +.+
T Consensus 59 e~~Y~e~l~h-~~~~~--------~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~ 129 (283)
T PRK00811 59 EFIYHEMMTH-VPLFA--------HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYD 129 (283)
T ss_pred hhhHHHHhhh-HHHhh--------CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccccc
Confidence 4789997776 44443 367899999999999999999887666799999999999999999994 235
Q ss_pred CCCeeEE-----------------------------ecccchhHHHHHHHhhccCCCCcEEEecCc-----hH-HHHHHH
Q 006149 590 DKSLKVF-----------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNSF-----PE-AAVQLG 634 (659)
Q Consensus 590 d~rl~vf-----------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~~-----~~-~~~~l~ 634 (659)
|+|++++ .+|++.+|++.|+++| +++|+++.|.- +. ....++
T Consensus 130 d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L---~~gGvlv~~~~~~~~~~~~~~~i~~ 206 (283)
T PRK00811 130 DPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRAL---KEDGIFVAQSGSPFYQADEIKDMHR 206 (283)
T ss_pred CCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhc---CCCcEEEEeCCCcccCHHHHHHHHH
Confidence 7777332 2578899999999999 99999999862 22 222444
Q ss_pred hhcc-CCccc
Q 006149 635 KLVK-FQHLE 643 (659)
Q Consensus 635 ~~~~-f~~~~ 643 (659)
++.+ |+++.
T Consensus 207 tl~~~F~~v~ 216 (283)
T PRK00811 207 KLKEVFPIVR 216 (283)
T ss_pred HHHHHCCCEE
Confidence 5545 77653
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-14 Score=134.58 Aligned_cols=106 Identities=28% Similarity=0.428 Sum_probs=91.1
Q ss_pred CCCCeEEEECCCcchHHHHHHH-cC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYD-AG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~-~g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDvVi~~ 141 (659)
+.+.+|||+|||+|.++..|++ .+ ..+++|+|+|+.+++.+++++...+ ++++++++|+.+++ ++ ++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 3578999999999999999994 32 3689999999999999988765544 58999999999987 65 899999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++++.+.. .+++++.++|++||++++.+..
T Consensus 81 ~~l~~~~~~~-------~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPE-------KVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHH-------HHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHH-------HHHHHHHHHcCCCcEEEEEECC
Confidence 9998876544 8999999999999999999876
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-14 Score=139.53 Aligned_cols=114 Identities=19% Similarity=0.288 Sum_probs=92.8
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcc
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (659)
.+.+.+.. .++.+|||+|||+|.++..|++.|. +|+|+|+|+.+++.++++....+-++.+.++|+...+++ ++|
T Consensus 21 ~l~~~~~~---~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~f 95 (195)
T TIGR00477 21 AVREAVKT---VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDY 95 (195)
T ss_pred HHHHHhcc---CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCC
Confidence 34555544 3567999999999999999999987 999999999999988776655444588888898776664 689
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|+|++..+++++.... ...+++++.++|+|||++++++.
T Consensus 96 D~I~~~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGR-----VPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CEEEEecccccCCHHH-----HHHHHHHHHHHhCCCcEEEEEEe
Confidence 9999999998875433 67999999999999999777653
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.1e-14 Score=143.19 Aligned_cols=114 Identities=20% Similarity=0.349 Sum_probs=95.2
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCc
Q 006149 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDET 134 (659)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~s 134 (659)
..+.+.+.. .+..+|||+|||+|.++..++..+. +|+++|+|+.+++.++++. ....++++|+.++++++++
T Consensus 32 ~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~----~~~~~~~~d~~~~~~~~~~ 103 (251)
T PRK10258 32 DALLAMLPQ---RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKD----AADHYLAGDIESLPLATAT 103 (251)
T ss_pred HHHHHhcCc---cCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC----CCCCEEEcCcccCcCCCCc
Confidence 344455543 3567999999999999999988775 9999999999998776553 2457899999999998899
Q ss_pred ccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 135 FDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
||+|++..+++++.+.. .++.++.++|+|||.+++.++....
T Consensus 104 fD~V~s~~~l~~~~d~~-------~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 104 FDLAWSNLAVQWCGNLS-------TALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred EEEEEECchhhhcCCHH-------HHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 99999999999876644 8999999999999999999987554
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-14 Score=150.54 Aligned_cols=106 Identities=20% Similarity=0.253 Sum_probs=93.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||||||+|.++..|+..|. +|+|||+++.+++.++++..... .++.++++|+.++++++++||+|++.++++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 567999999999999999998876 89999999999998876654322 479999999999988888999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
|+.++. .+++++.++|||||.+++.+...
T Consensus 210 Hv~d~~-------~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 210 HVANPA-------EFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hcCCHH-------HHHHHHHHHcCCCcEEEEEECCc
Confidence 998765 89999999999999999998764
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=142.77 Aligned_cols=109 Identities=16% Similarity=0.251 Sum_probs=93.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|..+..++.....+|+++|+|+.+++.++++... ..++.+.++|+.+.++++++||+|++..++.|
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h 129 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAILH 129 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCCCCeEEEEEhhhHHh
Confidence 57889999999999999988765224899999999999988776543 46799999999999999999999999888888
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+...+ ...++++++++|||||++++.++..
T Consensus 130 ~~~~d-----~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 130 LSYAD-----KKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred CCHHH-----HHHHHHHHHHHcCCCcEEEEEEecc
Confidence 65322 5699999999999999999998754
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=141.31 Aligned_cols=107 Identities=18% Similarity=0.309 Sum_probs=92.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC-CCCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-FMDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~-~~~~sFDvVi~~g~l 144 (659)
++.+|||+|||+|.++..|++.+. +|+++|+|+.+++.++++....+ ++++++++|+.+++ +.+++||+|++.+++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 567999999999999999999976 99999999999999887765543 57899999998873 567899999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+++.++. .+++++.++|||||++++..+...
T Consensus 123 ~~~~~~~-------~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 123 EWVADPK-------SVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred HhhCCHH-------HHHHHHHHHcCCCeEEEEEEECcc
Confidence 9987654 899999999999999998876643
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=142.47 Aligned_cols=147 Identities=22% Similarity=0.322 Sum_probs=107.2
Q ss_pred hhhhcccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC----CC
Q 006149 17 DLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG----FH 92 (659)
Q Consensus 17 ~lp~~~~~f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g----~~ 92 (659)
.+|..........||...+..+ ..|.+.+.|..+...+...+......+..+|||+|||+|.++..+++.. ..
T Consensus 37 ll~~~~~~~~~~~d~~~~~~ar---~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~ 113 (272)
T PRK11088 37 LLPVQHKRSKDPGDNKEMMQAR---RAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTM 113 (272)
T ss_pred eccccccCCCCCCcCHHHHHHH---HHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCC
Confidence 3454334444556777777655 3444555566666666555543112355789999999999999988652 23
Q ss_pred eEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCe
Q 006149 93 GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 172 (659)
Q Consensus 93 ~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG 172 (659)
.++|+|+|+.+++.+.++ .+++.+.++|+.++|+++++||+|++..+ + ..++++.|+|||||
T Consensus 114 ~v~giD~s~~~l~~A~~~----~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------~--------~~~~e~~rvLkpgG 175 (272)
T PRK11088 114 QLFGLDISKVAIKYAAKR----YPQVTFCVASSHRLPFADQSLDAIIRIYA------P--------CKAEELARVVKPGG 175 (272)
T ss_pred eEEEECCCHHHHHHHHHh----CCCCeEEEeecccCCCcCCceeEEEEecC------C--------CCHHHHHhhccCCC
Confidence 799999999999877544 36799999999999999999999997532 1 23688999999999
Q ss_pred EEEEEEcCCchh
Q 006149 173 KFVCLTLAESHV 184 (659)
Q Consensus 173 ~lvi~~~~~~~~ 184 (659)
++++++....+.
T Consensus 176 ~li~~~p~~~~l 187 (272)
T PRK11088 176 IVITVTPGPRHL 187 (272)
T ss_pred EEEEEeCCCcch
Confidence 999999876664
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-14 Score=124.74 Aligned_cols=96 Identities=30% Similarity=0.477 Sum_probs=80.9
Q ss_pred EEEECCCcchHHHHHHHc---CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccc-ccc
Q 006149 72 ILVPGCGNSRLSEHLYDA---GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG-LDA 146 (659)
Q Consensus 72 ILDiGCG~G~~s~~La~~---g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~-l~~ 146 (659)
|||+|||+|..+..+++. +. .+++++|+|+.+++.++++....+.+++++++|+.++++.+++||+|++.+. +++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999876 32 6999999999999999888776667999999999999888899999999655 888
Q ss_pred cCCcccchHHHHHHHHHHHhccccCe
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGG 172 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG 172 (659)
+.+.+ ..++++++.++|+|||
T Consensus 81 ~~~~~-----~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEE-----LEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHH-----HHHHHHHHHHTEEEEE
T ss_pred CCHHH-----HHHHHHHHHHHhCCCC
Confidence 65544 7899999999999998
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=133.10 Aligned_cols=141 Identities=19% Similarity=0.245 Sum_probs=102.0
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHH---HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHH
Q 006149 27 SKENWDKFFTIRGIGDSFEWYAEWPQLR---DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (659)
Q Consensus 27 ~~eyWd~~y~~~~~~~~fewy~~~~~l~---~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~ 103 (659)
+.++|++.++.. +++.....+-+-+ ..+...+.. ..-.++||+|||+|.++..|+.+.. .++++|+|+.+
T Consensus 5 ~~~~l~~~la~~---DPW~~~~~~YE~~K~~~~l~aaLp~---~ry~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~A 77 (201)
T PF05401_consen 5 NYQLLNRELAND---DPWGFETSWYERRKYRATLLAALPR---RRYRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRA 77 (201)
T ss_dssp HHHHHHHHHTSS---SGGGTTT-HHHHHHHHHHHHHHHTT---SSEEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHH
T ss_pred HHHHHHHHhCCC---CCCCCCCCHHHHHHHHHHHHHhcCc---cccceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHH
Confidence 467888887765 4544322222222 223333544 4567999999999999999999964 89999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 104 ISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 104 i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+.++++.. ..++|+|+++|+.+. .|+++||+|++..++|++.+.+ .+..++..+...|+|||.+++.+..
T Consensus 78 l~~Ar~Rl~-~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~----~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 78 LARARERLA-GLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAE----DLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp HHHHHHHTT-T-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHH----HHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHHHHhcC-CCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHH----HHHHHHHHHHHHhCCCCEEEEEEec
Confidence 999988875 458999999999885 4679999999999999997633 2778999999999999999998865
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=144.77 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=93.3
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHh--hcCCCCcEEEEeecCCCCCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN--VRDRSDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~--~~~~~~i~~~~~D~~~l~~~~~ 133 (659)
.+...+.. .++.+|||||||+|.++..++..|...|+|+|+|+.++.+..... .....++.++.+|+.++++ ++
T Consensus 113 ~l~~~l~~---l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 113 RVLPHLSP---LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHHhhCC---CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cC
Confidence 34445543 357899999999999999999988778999999999987654332 2224579999999999988 78
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+||+|++.++++|+.++. .+++++++.|+|||.+++.++
T Consensus 189 ~FD~V~s~~vl~H~~dp~-------~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 189 AFDTVFSMGVLYHRRSPL-------DHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CcCEEEECChhhccCCHH-------HHHHHHHHhcCCCcEEEEEEE
Confidence 999999999999987654 899999999999999998764
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-13 Score=144.37 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC------
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------ 588 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~------ 588 (659)
++-||++|++. ++.. +++|++||+||+|+|.+++.+.++.+..+|++|||||+|+++|++||.++
T Consensus 133 E~iYHE~Lvhp-~m~~--------h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~ 203 (374)
T PRK01581 133 EQIYHEALVHP-IMSK--------VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA 203 (374)
T ss_pred HHHHHHHHHHH-HHHh--------CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc
Confidence 45699999984 4433 37889999999998888888888877779999999999999999988764
Q ss_pred -CCCCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 589 -QDKSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 589 -~d~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.|+|++++ ..||+.+|++.|++.| +|+|+++.+.
T Consensus 204 ~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~L---kPgGV~V~Qs 268 (374)
T PRK01581 204 FFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFL---TEDGAFVCQS 268 (374)
T ss_pred CCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhc---CCCcEEEEec
Confidence 47788332 2378899999999999 9999998876
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.7e-14 Score=145.99 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=89.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||+|..+..|++.|. +|+|+|+|+.+++.++++....+.++++.+.|+...++ +++||+|++..+++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 346999999999999999999986 99999999999998887776656688999999988765 6889999999999987
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.... ...+++++.++|+|||+++++.
T Consensus 198 ~~~~-----~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 NRER-----IPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CHHH-----HHHHHHHHHHhcCCCcEEEEEE
Confidence 5433 6799999999999999977654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.2e-13 Score=150.22 Aligned_cols=108 Identities=22% Similarity=0.339 Sum_probs=94.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|..+..|++....+|+|+|+|+.+++.++++......++.|.++|+.+.++++++||+|++.++++|
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 46789999999999999999876334899999999999988766544446799999999999888889999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+.++. .++++++++|||||++++.++..
T Consensus 345 ~~d~~-------~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 345 IQDKP-------ALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred cCCHH-------HHHHHHHHHcCCCeEEEEEEecc
Confidence 97654 89999999999999999998753
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.5e-13 Score=136.25 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=89.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc---CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~---g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g 142 (659)
++.+|||+|||+|..+..++.. +..+|+++|+|+.|++.++++....+ .+++++++|+.+++++ .+|+|++..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 5789999999999999888762 33589999999999999988775433 4799999999988764 599999999
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+++++...+ ...++++++++|||||.+++.+.
T Consensus 134 ~l~~l~~~~-----~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEPSE-----RQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCHHH-----HHHHHHHHHHhcCCCCEEEEEEe
Confidence 999986433 56899999999999999999874
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.9e-13 Score=139.22 Aligned_cols=106 Identities=18% Similarity=0.262 Sum_probs=88.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHH--HhhcCCCCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~--~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||+|||+|.++..++..|...|+|+|.|+.|+.++.. +......++.+..+++.+++.. .+||+|++.+++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence 4678999999999999999988887789999999999876432 2222345788899999988764 589999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+|+.++. .+|++++++|+|||.+++.++.
T Consensus 199 ~H~~dp~-------~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 199 YHRKSPL-------EHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred hccCCHH-------HHHHHHHHhcCCCCEEEEEEEE
Confidence 9987654 8999999999999999998753
|
Known examples to date are restricted to the proteobacteria. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-13 Score=138.12 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=84.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.+++ .+++++++|+.+++ ++++||+|++..+++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~------~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE------RGVDARTGDVRDWK-PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh------cCCcEEEcChhhCC-CCCCceEEEEehhhh
Confidence 467899999999999999998872 3489999999999987744 25889999998874 567999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
++.+.. .++++++++|||||++++...
T Consensus 101 ~~~d~~-------~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 101 WVPEHA-------DLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hCCCHH-------HHHHHHHHhCCCCcEEEEEcC
Confidence 987543 899999999999999998754
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-13 Score=136.00 Aligned_cols=180 Identities=19% Similarity=0.261 Sum_probs=118.5
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHH--HhhcCCCCcEEE
Q 006149 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWR 121 (659)
Q Consensus 44 fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~--~~~~~~~~i~~~ 121 (659)
-||..++. ...+...+.. -.+.+|||||||+|..+..|+..|.+.|+|+|.+.-...+... +.......+.++
T Consensus 96 tEWrSd~K--W~rl~p~l~~---L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l 170 (315)
T PF08003_consen 96 TEWRSDWK--WDRLLPHLPD---LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL 170 (315)
T ss_pred ccccccch--HHHHHhhhCC---cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEc
Confidence 35665542 2235555543 4688999999999999999999999899999999988776432 332222333444
Q ss_pred EeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhc-chhhhhccCceEEE
Q 006149 122 VMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG-LLFPKFRFGWKMSV 200 (659)
Q Consensus 122 ~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~-~l~~~~~~~w~~~~ 200 (659)
-.-+.++|. .+.||+|++.|+|+|..++- .+|.+++..|++||.+++-|+.-+.-.. .+...-+..=+-.+
T Consensus 171 plgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl-------~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv 242 (315)
T PF08003_consen 171 PLGVEDLPN-LGAFDTVFSMGVLYHRRSPL-------DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNV 242 (315)
T ss_pred Ccchhhccc-cCCcCEEEEeeehhccCCHH-------HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCce
Confidence 467778876 68999999999999999886 8899999999999999998875332211 12222121112223
Q ss_pred eeeCCCCC-----CCCCCccEEEEEEecCCccccccccccc
Q 006149 201 HAIPQKSS-----SEPSLQTFMVVADKENSSVVLQVTSSFD 236 (659)
Q Consensus 201 ~~i~~~~~-----~~~~l~~f~~v~~k~~~~~~l~~~~~~~ 236 (659)
..+++... .+..+....++....+....+..++|++
T Consensus 243 ~FiPs~~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR~T~Wm~ 283 (315)
T PF08003_consen 243 WFIPSVAALKNWLERAGFKDVRCVDVSPTTIEEQRKTDWMD 283 (315)
T ss_pred EEeCCHHHHHHHHHHcCCceEEEecCccCCHHHhccCCCcC
Confidence 34443322 2344555556555545555566666743
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=9e-13 Score=131.75 Aligned_cols=101 Identities=17% Similarity=0.119 Sum_probs=84.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
++.+|||+|||+|..+..|+.. +..+++|+|+|+.+++.++++. +++.+.++|+.+ ++++++||+|++.++++|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-PFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-CCCCCCEEEEEECChhhh
Confidence 5679999999999999999886 4569999999999999876543 467889999988 888899999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.... +.++++++.+++ ++++++.++-
T Consensus 118 l~p~~-----~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 118 INPDN-----LPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred CCHHH-----HHHHHHHHHhhc--CcEEEEEEee
Confidence 85332 679999999998 5677777653
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.4e-13 Score=126.28 Aligned_cols=109 Identities=31% Similarity=0.515 Sum_probs=89.3
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 133 (659)
...+..+... ..++.+|||+|||+|.++..+++.|+ +++|+|+++.+++. ..+.....+....+.+++
T Consensus 10 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 77 (161)
T PF13489_consen 10 ADLLERLLPR--LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RNVVFDNFDAQDPPFPDG 77 (161)
T ss_dssp HHHHHHHHTC--TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TTSEEEEEECHTHHCHSS
T ss_pred HHHHHHHhcc--cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hhhhhhhhhhhhhhcccc
Confidence 3445555531 14678999999999999999988888 99999999988875 345566665556566789
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+||+|++..+++|+.++ ..+++++.++|||||++++.+...
T Consensus 78 ~fD~i~~~~~l~~~~d~-------~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 78 SFDLIICNDVLEHLPDP-------EEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SEEEEEEESSGGGSSHH-------HHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred chhhHhhHHHHhhcccH-------HHHHHHHHHhcCCCCEEEEEEcCC
Confidence 99999999999999854 499999999999999999999864
|
... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=132.26 Aligned_cols=97 Identities=20% Similarity=0.265 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||||.++..+++....+|+|+|+|+.|++.++++ ..++++|+.++|+++++||+|++..+++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-------DDKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-------cceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 3679999999999999999887324899999999999977543 246899999999999999999999999988
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.+.+ +++++++|+|||. +++++++
T Consensus 124 ~d~~-------~~l~e~~RvLkp~--~~ile~~ 147 (226)
T PRK05785 124 DNIE-------KVIAEFTRVSRKQ--VGFIAMG 147 (226)
T ss_pred CCHH-------HHHHHHHHHhcCc--eEEEEeC
Confidence 6644 8999999999994 3344444
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=131.42 Aligned_cols=107 Identities=23% Similarity=0.345 Sum_probs=92.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.+.+|||+|||+|.++..+++.+. .+++++|+++.++..+.++.. +++.++.+|+.+.++++++||+|++..++++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLPLEDSSFDLIVSNLALQW 110 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCCCCCCceeEEEEhhhhhh
Confidence 347999999999999999988753 578999999999987766553 4789999999999988899999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
+.+.. .++.++.++|+|||.+++.++....+
T Consensus 111 ~~~~~-------~~l~~~~~~L~~~G~l~~~~~~~~~~ 141 (240)
T TIGR02072 111 CDDLS-------QALSELARVLKPGGLLAFSTFGPGTL 141 (240)
T ss_pred ccCHH-------HHHHHHHHHcCCCcEEEEEeCCccCH
Confidence 86544 89999999999999999998775543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=137.83 Aligned_cols=104 Identities=16% Similarity=0.208 Sum_probs=89.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++.. ..+++++.+|+.++++++++||+|++.+++++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 5689999999999999888775 44589999999999998876542 35789999999999998899999999999998
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.+.+ .+++++.++|+|||+++++...
T Consensus 191 ~~d~~-------~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 191 WPDPQ-------RGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred CCCHH-------HHHHHHHHhcCCCcEEEEEEec
Confidence 87654 8999999999999999887643
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.9e-12 Score=123.09 Aligned_cols=118 Identities=19% Similarity=0.091 Sum_probs=91.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++....+ ++++++++|+.+++. .++||+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 4789999999999999988864 34699999999999998877765544 469999999999876 679999998642
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh-ccCceEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 199 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~-~~~w~~~ 199 (659)
.+ ...+++.+.++|+|||++++.... +....+.... ..+|.+.
T Consensus 122 --~~-------~~~~l~~~~~~LkpGG~lv~~~~~--~~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 --AS-------LSDLVELCLPLLKPGGRFLALKGR--DPEEEIAELPKALGGKVE 165 (187)
T ss_pred --cC-------HHHHHHHHHHhcCCCeEEEEEeCC--ChHHHHHHHHHhcCceEe
Confidence 21 458999999999999999998754 3333333222 2378765
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-12 Score=130.19 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=89.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc---CCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCCCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~---g~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDvVi~~g 142 (659)
++.+|||+|||+|..+..+++. +..+|+|+|+|+.|++.++++.... ..+++++++|+.+++++ .+|+|++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 5679999999999999989875 2358999999999999988776443 24689999999998765 589999999
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++++.+.+ ...++++++++|+|||.+++.+..
T Consensus 131 ~l~~~~~~~-----~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 131 TLQFLPPED-----RIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred chhhCCHHH-----HHHHHHHHHHhcCCCeEEEEeecc
Confidence 999875433 568999999999999999998753
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-12 Score=127.58 Aligned_cols=118 Identities=23% Similarity=0.376 Sum_probs=98.4
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (659)
++..+.+.+.. .++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++......++.+...|+.+.++
T Consensus 7 ~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 7 YRARTFELLAV---QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCC
Confidence 34445555554 577899999999999999998762 3689999999999998876633445789999999999888
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++||+|++..+++++.++. .+++++.++|+|||.+++.+..
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~-------~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPA-------RALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCceEEEEechhhccCCHH-------HHHHHHHHHhcCCcEEEEEecC
Confidence 889999999999999987654 8999999999999999988753
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-12 Score=131.39 Aligned_cols=100 Identities=23% Similarity=0.355 Sum_probs=85.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++. +++.++.+|+.++. ++++||+|++..+++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASWQ-PPQALDLIFANASLQ 104 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhccC-CCCCccEEEEccChh
Confidence 46789999999999999999876 3468999999999998776543 56899999998765 456999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
++.+. ..+++++.++|||||++++..
T Consensus 105 ~~~d~-------~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 105 WLPDH-------LELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hCCCH-------HHHHHHHHHhcCCCcEEEEEC
Confidence 98654 389999999999999998864
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.2e-12 Score=132.39 Aligned_cols=107 Identities=18% Similarity=0.306 Sum_probs=90.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~-~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++.+|||+|||+|..+..++.. +. .+|+++|+++.+++.++++....+ .+++++++|+.++++++++||+|++..+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 57889999999999988777665 43 479999999999999877654433 5789999999999988889999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++..+. ..+++++.++|||||++++.++.
T Consensus 156 ~~~~~d~-------~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 156 INLSPDK-------ERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred ccCCCCH-------HHHHHHHHHHcCCCcEEEEEEee
Confidence 9876553 48999999999999999998764
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-12 Score=130.87 Aligned_cols=115 Identities=22% Similarity=0.296 Sum_probs=89.2
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCC
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~ 133 (659)
+..++.....+++.+|||||||-|.++..+++. |. +|+||.+|+...+.++++....+ .++++.++|..+++ .
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~ 126 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---G 126 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---C
Confidence 444455455689999999999999999999998 76 99999999999999988887666 56999999998875 3
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+||.|++.+++.|+.... ...+++.+.++|+|||++++.+.+
T Consensus 127 ~fD~IvSi~~~Ehvg~~~-----~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKN-----YPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp S-SEEEEESEGGGTCGGG-----HHHHHHHHHHHSETTEEEEEEEEE
T ss_pred CCCEEEEEechhhcChhH-----HHHHHHHHHHhcCCCcEEEEEecc
Confidence 899999999999986543 679999999999999999976654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-12 Score=143.20 Aligned_cols=112 Identities=19% Similarity=0.254 Sum_probs=91.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--CCCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--FMDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--~~~~sFDvVi~~g~l 144 (659)
++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.++++....+.++.++++|+.+++ +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 4689999999999999888875 3469999999999999988776544567888999999887 788999999999988
Q ss_pred cccCCc----c--cchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 145 DALMEP----E--LGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 145 ~~l~~~----~--~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+++.+. . .......+++++++++|||||++++.+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 865321 0 0112367999999999999999999874
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-12 Score=123.53 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=92.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcE-EEEeecCCCC-CCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMR-WRVMDMTSMQ-FMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~-~~~~D~~~l~-~~~~sFDvVi~~g~ 143 (659)
.....||++|||||..-...-.....+||++|.++.|-+.+.+++++.. .++. |++++.++++ ++++++|+|++..+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 3456789999999998876654444599999999999998888877765 4566 9999999997 89999999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|....++. +.|+++.|+|||||+++++++.
T Consensus 155 LCSve~~~-------k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 155 LCSVEDPV-------KQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EeccCCHH-------HHHHHHHHhcCCCcEEEEEecc
Confidence 99887755 9999999999999999999976
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-12 Score=131.33 Aligned_cols=102 Identities=25% Similarity=0.411 Sum_probs=87.4
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---C----CcEEEEeecCCCCCCCCcccEEEec
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---S----DMRWRVMDMTSMQFMDETFDVILDK 141 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~----~i~~~~~D~~~l~~~~~sFDvVi~~ 141 (659)
+.+|||+|||+|.+++.|++.|. +|+|||.++.+|+.+++...... . ++.+.+.|+.... +.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 47899999999999999999996 99999999999999988743222 1 3667778877763 559999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.+++|+.++. .++..+.++|||||.+++.+...
T Consensus 166 evleHV~dp~-------~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 EVLEHVKDPQ-------EFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHhCHH-------HHHHHHHHHhCCCCceEeeehhh
Confidence 9999998876 89999999999999999999763
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=125.48 Aligned_cols=116 Identities=24% Similarity=0.375 Sum_probs=95.7
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~ 131 (659)
.+...+.. .++.+|||+|||+|..+..++..+ ..+++++|+++.+++.++++.... ..++.+..+|+.+.+++
T Consensus 42 ~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 42 KTIKWLGV---RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHhCC---CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 34444443 457899999999999999998875 369999999999999887765432 35689999999998887
Q ss_pred CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.++||+|++..+++++.+. ..++.++.++|+|||++++.+...
T Consensus 119 ~~~~D~I~~~~~l~~~~~~-------~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDI-------DKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred CCCccEEEEecccccCCCH-------HHHHHHHHHhccCCcEEEEEEecC
Confidence 7899999999988887654 489999999999999999987654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=127.39 Aligned_cols=115 Identities=19% Similarity=0.289 Sum_probs=98.7
Q ss_pred hCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEE
Q 006149 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVI 138 (659)
Q Consensus 61 l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvV 138 (659)
+......|+.+|||||||-|.++..+|+.-..+|+|+++|+++.+.++++....+ .+++++..|..+++ +.||-|
T Consensus 65 ~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrI 141 (283)
T COG2230 65 LEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRI 141 (283)
T ss_pred HHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---ccccee
Confidence 3334458999999999999999999999832499999999999999998877665 36999999998875 459999
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
++.++++|+.... ...+|+.++++|+|||++++.+...++
T Consensus 142 vSvgmfEhvg~~~-----~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 142 VSVGMFEHVGKEN-----YDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred eehhhHHHhCccc-----HHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 9999999997654 779999999999999999998887555
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.2e-12 Score=125.58 Aligned_cols=131 Identities=16% Similarity=0.133 Sum_probs=94.7
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeec-CCCC--CCCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM-TSMQ--FMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~-~~l~--~~~~sFDvVi~~g 142 (659)
++.+|||+|||+|..+..+++. +..+|+++|+|+.+++.+.++..... +++.++++|+ ..++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5689999999999999999876 34589999999999998887665443 6799999999 6665 7778999999865
Q ss_pred cccccCCccc-chHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh-ccCceEE
Q 006149 143 GLDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 199 (659)
Q Consensus 143 ~l~~l~~~~~-~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~-~~~w~~~ 199 (659)
...+...... .......+++++.++|||||++++.+.....+ ..+...+ ..+|...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYA-EYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHhCccccc
Confidence 4332211110 00013588999999999999999988654333 2333333 3456544
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-11 Score=109.30 Aligned_cols=114 Identities=15% Similarity=0.103 Sum_probs=86.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC-C
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM-Q 129 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l-~ 129 (659)
....+...+.. .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++...... .++.++..|+... +
T Consensus 7 ~~~~~~~~~~~---~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 7 VRALTLSKLRL---RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh
Confidence 34444555543 45679999999999999999887 34689999999999998876654432 5788888887752 3
Q ss_pred CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 130 ~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
...++||+|++.+.... ...+++++.++|+|||++++..+
T Consensus 84 ~~~~~~D~v~~~~~~~~----------~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 84 DSLPEPDRVFIGGSGGL----------LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred hhcCCCCEEEECCcchh----------HHHHHHHHHHHcCCCCEEEEEec
Confidence 33468999998664332 45899999999999999998754
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.5e-12 Score=123.75 Aligned_cols=149 Identities=21% Similarity=0.292 Sum_probs=108.0
Q ss_pred CCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC---CeEEEEcCCHH
Q 006149 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---HGITNVDFSKV 102 (659)
Q Consensus 26 ~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~---~~VtgvD~S~~ 102 (659)
..+.|||.+|.... ..| +.+..-+...+-+++... ..+..+||++|||.|.....+.+... -.|.++|+|+.
T Consensus 34 ~~~k~wD~fy~~~~--~rF--fkdR~wL~~Efpel~~~~-~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~ 108 (264)
T KOG2361|consen 34 EASKYWDTFYKIHE--NRF--FKDRNWLLREFPELLPVD-EKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR 108 (264)
T ss_pred chhhhhhhhhhhcc--ccc--cchhHHHHHhhHHhhCcc-ccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChH
Confidence 35679999999872 323 223222333344444431 12333899999999999988877621 37999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEeecCCC----CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 103 VISDMLRRNVRDRSDMRWRVMDMTSM----QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 103 ~i~~~~~~~~~~~~~i~~~~~D~~~l----~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+|+..++.......++...+.|++.. +.+.+++|+|.+..+|.++.... ...++.+++++|||||.+++-+
T Consensus 109 Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek-----~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 109 AIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEK-----MQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred HHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHH-----HHHHHHHHHHHhCCCcEEEEee
Confidence 99876554333334566667777653 46679999999999999987655 7899999999999999999999
Q ss_pred cCCchh
Q 006149 179 LAESHV 184 (659)
Q Consensus 179 ~~~~~~ 184 (659)
++...+
T Consensus 184 Yg~~Dl 189 (264)
T KOG2361|consen 184 YGRYDL 189 (264)
T ss_pred cccchH
Confidence 986554
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=119.50 Aligned_cols=100 Identities=20% Similarity=0.160 Sum_probs=80.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++..++..+ ..+|+++|.|+.+++.+++.....+ .+++++++|+.+++ ..++||+|++.+ ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 46899999999999999988663 3589999999999987766554433 57999999999874 357999999876 32
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+ ...+++.+.++|+|||++++...
T Consensus 120 ~----------~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 120 S----------LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred C----------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 2 34788999999999999998754
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.2e-11 Score=117.11 Aligned_cols=111 Identities=21% Similarity=0.291 Sum_probs=89.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++......+++++++|+.+.. .++||+|+++..+++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 557999999999999999998876 8999999999999887776555567889999987754 4589999999877655
Q ss_pred CCcc--------------cchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 148 MEPE--------------LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 148 ~~~~--------------~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.+.. .+......++.++.++|+|||+++++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 4321 111236789999999999999999987653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=138.84 Aligned_cols=114 Identities=22% Similarity=0.291 Sum_probs=94.0
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC--CCCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS--MQFMDE 133 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~--l~~~~~ 133 (659)
.+.+++.. .++.+|||+|||+|.++..|++.+ .+|+|+|+++.+++.+.+.. ...+++.++++|+.+ ++++++
T Consensus 28 ~il~~l~~---~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 28 EILSLLPP---YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred HHHhhcCc---cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccCCCCC
Confidence 35555543 356799999999999999999885 48999999999998765433 234689999999974 567888
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+||+|++..+++++.+.+ ...+++++.++|||||++++.+.
T Consensus 103 ~fD~I~~~~~l~~l~~~~-----~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKE-----VENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CEEEEehhhhHHhCCHHH-----HHHHHHHHHHhcCCCeEEEEEec
Confidence 999999999999987654 56999999999999999998764
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=129.02 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=85.1
Q ss_pred CCCeEEEECCCcch----HHHHHHHcC------CCeEEEEcCCHHHHHHHHHHhhc------------------------
Q 006149 68 PPPQILVPGCGNSR----LSEHLYDAG------FHGITNVDFSKVVISDMLRRNVR------------------------ 113 (659)
Q Consensus 68 ~~~~ILDiGCG~G~----~s~~La~~g------~~~VtgvD~S~~~i~~~~~~~~~------------------------ 113 (659)
++.+|+|+|||+|. ++..+++.+ ..+|+|+|+|+.||+.+++..-.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 344555431 13899999999999988753210
Q ss_pred ----CCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 114 ----DRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 114 ----~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
-..++.|.++|+.+.+++.++||+|+|.++++++..+. ..+++++++++|+|||++++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~-----~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT-----QRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH-----HHHHHHHHHHHhCCCeEEEEECc
Confidence 01368999999999887788999999999999986544 67999999999999999998653
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-11 Score=120.57 Aligned_cols=112 Identities=21% Similarity=0.166 Sum_probs=87.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~ 126 (659)
+.....+.+.+.. .++.+|||+|||+|..+..+++. + .++|+++|+++.+++.++++....+ .+++++.+|+.
T Consensus 58 p~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 58 PHMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 3444556666653 57789999999999999888875 2 3589999999999998877665444 35899999998
Q ss_pred CCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 127 ~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+.....++||+|++.+++.++ .+++.++|+|||++++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~-------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTI-------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchh-------------hHHHHHhcCcCcEEEEEE
Confidence 754456799999998876643 356889999999998754
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=120.17 Aligned_cols=114 Identities=25% Similarity=0.409 Sum_probs=95.0
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~--~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 133 (659)
.+...+.. .++.+|||+|||+|..+..+++... .+++++|+++.+++.+.++.. ...++.++.+|+.+.+++.+
T Consensus 30 ~~~~~~~~---~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~ 105 (223)
T TIGR01934 30 RAVKLIGV---FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDN 105 (223)
T ss_pred HHHHHhcc---CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCC
Confidence 34444443 4678999999999999999988754 489999999999998876654 44578999999999888778
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+||+|++..+++++.+. ..+++++.++|+|||++++.++.
T Consensus 106 ~~D~i~~~~~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 106 SFDAVTIAFGLRNVTDI-------QKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred cEEEEEEeeeeCCcccH-------HHHHHHHHHHcCCCcEEEEEEec
Confidence 99999999888887653 48999999999999999998865
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=124.39 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=87.6
Q ss_pred CeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.+|||+|||+|..+..+++.. ..+|+|+|+|+.+++.++++....+ .+++++..|+...+++ ++||+|++..++++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 379999999999999998863 3589999999999998887765433 5789999999777665 58999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.+. ..+++++.++|+|||++++.++.
T Consensus 80 ~~~~-------~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 80 IKDK-------MDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCCH-------HHHHHHHHHHcCCCCEEEEEEcc
Confidence 8653 49999999999999999998764
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.1e-13 Score=116.08 Aligned_cols=95 Identities=26% Similarity=0.343 Sum_probs=61.2
Q ss_pred EEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCcccEEEecccccccC
Q 006149 73 LVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDKGGLDALM 148 (659)
Q Consensus 73 LDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDvVi~~g~l~~l~ 148 (659)
||+|||+|.++..+.+. ...+++++|+|+.|++.++++..... ........+..+.. ...++||+|++.++++++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999887 44699999999999977766665543 33444444444331 1225999999999999993
Q ss_pred CcccchHHHHHHHHHHHhccccCeEE
Q 006149 149 EPELGHKLGNQYLSEVKRLLKSGGKF 174 (659)
Q Consensus 149 ~~~~~~~~~~~~l~ei~rvLkpGG~l 174 (659)
+ ...++++++++|+|||+|
T Consensus 81 ~-------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D-------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --------HHHHHHHHTTT-TSS-EE
T ss_pred h-------HHHHHHHHHHHcCCCCCC
Confidence 3 569999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-11 Score=116.34 Aligned_cols=123 Identities=21% Similarity=0.290 Sum_probs=92.8
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCCC-CcEEEEeecCCCCCCC
Q 006149 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQFMD 132 (659)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~~-~i~~~~~D~~~l~~~~ 132 (659)
..|.+++.. .+..+|||+|||+|.++..++..+. .+|+++|+++.+++.+++....... +++++..|+.+. .++
T Consensus 21 ~lL~~~l~~---~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~ 96 (170)
T PF05175_consen 21 RLLLDNLPK---HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPD 96 (170)
T ss_dssp HHHHHHHHH---HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCT
T ss_pred HHHHHHHhh---ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccc
Confidence 356666654 3578999999999999999999865 3699999999999988776655553 399999998774 447
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
++||+|+++..++.-. +.+.....+++....++|+|||.++++......
T Consensus 97 ~~fD~Iv~NPP~~~~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~ 145 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGG--DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLG 145 (170)
T ss_dssp TCEEEEEE---SBTTS--HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSC
T ss_pred cceeEEEEccchhccc--ccchhhHHHHHHHHHHhccCCCEEEEEeecCCC
Confidence 8999999998766433 223345789999999999999999776654333
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6e-11 Score=119.38 Aligned_cols=114 Identities=13% Similarity=0.065 Sum_probs=90.2
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeec
Q 006149 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM 125 (659)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~ 125 (659)
..+.+...+.+.+.. .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++....+ .+++++++|+
T Consensus 60 ~~p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~ 136 (212)
T PRK13942 60 SAIHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG 136 (212)
T ss_pred CcHHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc
Confidence 445666667776664 67899999999999999988876 3 2589999999999999887765544 5799999999
Q ss_pred CCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 126 ~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.....+.++||+|++.+.... +...+.+.|||||++++..
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~-------------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPD-------------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccCCCcCCCcCEEEECCCccc-------------chHHHHHhhCCCcEEEEEE
Confidence 876656789999998765543 2456778999999988864
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-11 Score=131.05 Aligned_cols=106 Identities=22% Similarity=0.280 Sum_probs=88.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++.. +..+++..+|..++ +++||+|++.+++++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL---NGQFDRIVSVGMFEH 240 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc---CCCCCEEEEeCchhh
Confidence 5788999999999999999988632489999999999998877663 34588888888765 478999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+.... ...+++++.++|||||++++.++..+
T Consensus 241 vg~~~-----~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 241 VGPKN-----YRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CChHH-----HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 85433 56899999999999999999887543
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-10 Score=112.77 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=88.5
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (659)
.+..+..+...+.. .++.+|||+|||+|.++..++..+ ..+|+++|+++.+++.+++.....+ .+++++++|+..
T Consensus 16 ~~~~r~~~~~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~ 92 (187)
T PRK08287 16 KEEVRALALSKLEL---HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI 92 (187)
T ss_pred hHHHHHHHHHhcCC---CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh
Confidence 34455556666654 467899999999999999998864 3589999999999998876554333 578999988753
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++ .++||+|++.+.... ...++..+.++|+|||++++....
T Consensus 93 -~~-~~~~D~v~~~~~~~~----------~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 93 -EL-PGKADAIFIGGSGGN----------LTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred -hc-CcCCCEEEECCCccC----------HHHHHHHHHHhcCCCeEEEEEEec
Confidence 33 368999998765432 347899999999999999887644
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-11 Score=119.60 Aligned_cols=102 Identities=20% Similarity=0.298 Sum_probs=89.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.+..+|.|+|||+|..+..|+++ +...|+|+|-|+.||+.+.++ .++++|..+|+.+.. +...+|+++++.+|+
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r----lp~~~f~~aDl~~w~-p~~~~dllfaNAvlq 103 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR----LPDATFEEADLRTWK-PEQPTDLLFANAVLQ 103 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh----CCCCceecccHhhcC-CCCccchhhhhhhhh
Confidence 56789999999999999999998 557999999999999877544 589999999999975 457899999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++-. .+|..+...|.|||.+.+-...
T Consensus 104 WlpdH~-------~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 104 WLPDHP-------ELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred hccccH-------HHHHHHHHhhCCCceEEEECCC
Confidence 998755 8999999999999999887643
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.4e-11 Score=120.20 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=86.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc----CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA----GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~----g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~ 141 (659)
.++.+|||+|||+|.++..|++. |. .+|+|+|+|+.|++.++++. ...++++.+++...++.++++||+|++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~--~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP--RRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc--ccCCCeEEEEecccccccCCCccEEEEC
Confidence 35679999999999999888753 32 48999999999999876553 2356788888888887778899999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
.+++|+.+++ ...+++++.++++ |.+++.++..+
T Consensus 137 ~~lhh~~d~~-----~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 137 HFLHHLDDAE-----VVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CeeecCChHH-----HHHHHHHHHHhcC--eeEEEeccccC
Confidence 9999997654 5689999999998 66777776644
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-11 Score=119.05 Aligned_cols=112 Identities=17% Similarity=0.086 Sum_probs=87.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC--CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~--~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (659)
+.....+.+++.. .++.+|||+|||+|.++..|++... .+|+++|+++.+++.++++....+ .+++++++|+.+
T Consensus 63 p~~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 63 PHMVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence 3444556666654 6789999999999999999988732 469999999999999887765544 579999999987
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.....++||+|+..+.... +...+.+.|+|||++++..
T Consensus 140 ~~~~~~~fD~Ii~~~~~~~-------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAAGPK-------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccCCCCEEEEcCCccc-------------ccHHHHHhcCcCcEEEEEE
Confidence 6444578999997765433 3456889999999998864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.6e-11 Score=119.44 Aligned_cols=136 Identities=18% Similarity=0.262 Sum_probs=94.8
Q ss_pred HhhHHHHHhhcCCCCcc--ccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHH
Q 006149 28 KENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (659)
Q Consensus 28 ~eyWd~~y~~~~~~~~f--ewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~ 105 (659)
.+.|+..|.... -..+ .+...+......+..++......++.+|||+|||+|.++..|++.+. .|+++|+|+.+++
T Consensus 22 ~~~w~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~ 99 (230)
T PRK07580 22 FDRWARIYSDAP-VSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVE 99 (230)
T ss_pred cchHHHhhCcCc-hhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHH
Confidence 467888876531 1111 01122333344455555421124578999999999999999998876 7999999999999
Q ss_pred HHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeE
Q 006149 106 DMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGK 173 (659)
Q Consensus 106 ~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~ 173 (659)
.++++....+ .++.+..+|+. ..+++||+|++..+++++.++. ...+++++.+.+++++.
T Consensus 100 ~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~l~~~~~~~-----~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 100 EARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDVLIHYPQED-----AARMLAHLASLTRGSLI 161 (230)
T ss_pred HHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcchhhcCCHHH-----HHHHHHHHHhhcCCeEE
Confidence 9987765443 37899999843 3467899999999998865443 66888888887754443
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=117.33 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=96.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (659)
.++.+|||+|||+|.++..+++.. ...|++||+++ | ...++++++++|+.+.+ +.+++||
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 467899999999999999998873 25899999998 2 12357999999999863 6678999
Q ss_pred EEEecccccccCCcccch----HHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeCCCCCCCCC
Q 006149 137 VILDKGGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPS 212 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~----~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~ 212 (659)
+|++..+.+....+..+. .....+|+++.++|+|||.|++..+....+. .++...+..|.. +..+...+.....
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~-~~l~~l~~~f~~-v~~~Kp~ssr~~s 197 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFD-EYLREIRSLFTK-VKVRKPDSSRARS 197 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHH-HHHHHHHhCceE-EEEECCccccccC
Confidence 999987766644321110 1136799999999999999999887644433 334444444433 3334444444444
Q ss_pred CccEEE
Q 006149 213 LQTFMV 218 (659)
Q Consensus 213 l~~f~~ 218 (659)
.+.|++
T Consensus 198 ~e~~~~ 203 (209)
T PRK11188 198 REVYIV 203 (209)
T ss_pred ceeEEE
Confidence 444544
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.7e-11 Score=118.98 Aligned_cols=137 Identities=19% Similarity=0.274 Sum_probs=99.9
Q ss_pred HhhHHHHHhhcCCCCcccccc-----chhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHH
Q 006149 28 KENWDKFFTIRGIGDSFEWYA-----EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (659)
Q Consensus 28 ~eyWd~~y~~~~~~~~fewy~-----~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~ 102 (659)
...|+..|... ....|.. ....+...+.+++.. ...++.+|||+|||+|.++..++..+. +|+|+|+|+.
T Consensus 14 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~ 88 (219)
T TIGR02021 14 FQRWARIYGSG---DPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQ 88 (219)
T ss_pred HHHHHHhhCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHH
Confidence 45787777643 1122211 122334455566652 114578999999999999999998865 8999999999
Q ss_pred HHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 103 VISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 103 ~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
+++.++++..... .++.+.++|+.+++ ++||+|++..+++++.... ...++.++.+++++++++.+.
T Consensus 89 ~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~-----~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 89 MVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASD-----MAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHH-----HHHHHHHHHHHhCCCEEEEEC
Confidence 9999888775544 37999999998875 7899999999988875433 568899999999877665543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=116.53 Aligned_cols=138 Identities=18% Similarity=0.107 Sum_probs=98.3
Q ss_pred CCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHH
Q 006149 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (659)
Q Consensus 25 f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i 104 (659)
|....||+..|..........-+...+.+...+..++.. .++.+|||+|||+|..+..++... .+|+++|+++.++
T Consensus 38 f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~ 113 (212)
T PRK00312 38 FVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQ 113 (212)
T ss_pred cCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHH
Confidence 444556777776552111111122345555666666654 578899999999999999888775 4899999999999
Q ss_pred HHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 105 SDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 105 ~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.++++....+ .++.+.++|+.+...+.++||+|++...+.+ +...+.+.|+|||++++...
T Consensus 114 ~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 114 WEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE-------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh-------------hhHHHHHhcCCCcEEEEEEc
Confidence 98877765443 4689999998664323478999998765543 34567899999999998765
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=121.45 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=97.4
Q ss_pred CccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHH-HHH-c-CCCeEEEEcCCHHHHHHHHHHhhc-C--C
Q 006149 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEH-LYD-A-GFHGITNVDFSKVVISDMLRRNVR-D--R 115 (659)
Q Consensus 42 ~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~-La~-~-g~~~VtgvD~S~~~i~~~~~~~~~-~--~ 115 (659)
..|-+|..|..+...=...+......++.+|+|||||.|.++.. ++. . ..+.++|+|+++.+++.+++.... . .
T Consensus 97 ~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~ 176 (296)
T PLN03075 97 NLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS 176 (296)
T ss_pred hcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc
Confidence 34667777777766444444331123678999999998866543 332 3 335899999999999988877643 2 3
Q ss_pred CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 116 SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 116 ~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+++|.++|+.+.....+.||+|++. ++.++...+ ..++++++.+.|+|||.+++-+.
T Consensus 177 ~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~-----k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 177 KRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEE-----KVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred CCcEEEECchhhcccccCCcCEEEEe-ccccccccc-----HHHHHHHHHHhcCCCcEEEEecc
Confidence 67999999998864335789999999 777664333 56999999999999999999873
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=116.58 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++.....+.++.++++|+.+. +++++||+|+++..+..
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCC
Confidence 46789999999999999999987766999999999999988766554445688899998763 45679999998754332
Q ss_pred cCC--------------cccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LME--------------PELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~--------------~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
... ..++......++.++.++|||||+++++...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 111 0111223567899999999999999987543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4e-10 Score=112.08 Aligned_cols=117 Identities=20% Similarity=0.246 Sum_probs=88.4
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~ 126 (659)
.+++......+.. .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++....+ .++.++++|+.
T Consensus 26 ~~~r~~~l~~l~~---~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~ 102 (198)
T PRK00377 26 EEIRALALSKLRL---RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP 102 (198)
T ss_pred HHHHHHHHHHcCC---CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence 3455555555544 67889999999999999988764 3 3589999999999998877665543 57899999987
Q ss_pred CC-CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 127 SM-QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 127 ~l-~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+. +...+.||.|++.+... . ...+++.+.++|+|||++++....
T Consensus 103 ~~l~~~~~~~D~V~~~~~~~-----~-----~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 103 EILFTINEKFDRIFIGGGSE-----K-----LKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred hhHhhcCCCCCEEEECCCcc-----c-----HHHHHHHHHHHcCCCcEEEEEeec
Confidence 64 32346899999854221 1 458899999999999999875543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=121.63 Aligned_cols=100 Identities=19% Similarity=0.229 Sum_probs=80.2
Q ss_pred cchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC----CC
Q 006149 514 LASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQ 589 (659)
Q Consensus 514 L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl----~~ 589 (659)
..+.||++|++ +.++. +++|++||+||+|+|++++.+.++.+..++++|||||.|+++|++||.. .+
T Consensus 54 ~e~~y~e~l~~-~~l~~--------~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~ 124 (270)
T TIGR00417 54 DEFIYHEMIAH-VPLFT--------HPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYD 124 (270)
T ss_pred hHHHHHHHhhh-hHhhc--------CCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccccc
Confidence 34789998876 44443 2677899999999999999998887777999999999999999999843 23
Q ss_pred CCCee------------------EE-----------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 590 DKSLK------------------VF-----------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 590 d~rl~------------------vf-----------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
++|++ +. .+|++.+|++.++++| +++|+++.|.
T Consensus 125 ~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L---~pgG~lv~~~ 186 (270)
T TIGR00417 125 DPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKAL---NEDGIFVAQS 186 (270)
T ss_pred CCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHh---CCCcEEEEcC
Confidence 45542 21 2467899999999999 9999999875
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=121.88 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=83.8
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC------CCCcEEEEeec
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------RSDMRWRVMDM 125 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~------~~~i~~~~~D~ 125 (659)
.....+.+++......++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.++++.... ..++.|.++|+
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 3444455665431112567999999999999999999886 8999999999999988776543 24678899998
Q ss_pred CCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 126 ~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
.++ +++||+|++..++.|+.+.. ...+++.+.+ +.+||.++
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~~~-----~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQDK-----ADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCHHH-----HHHHHHHHHh-hcCCEEEE
Confidence 664 47899999999998876543 4466666665 45555544
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.2e-11 Score=106.60 Aligned_cols=111 Identities=24% Similarity=0.342 Sum_probs=86.8
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC--CCCCcccEEEecccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--FMDETFDVILDKGGL 144 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--~~~~sFDvVi~~g~l 144 (659)
+.+|||+|||+|.++..+++.+..+++++|+++.+++.++....... .+++++++|+.+.. +++++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 36899999999999999998885699999999999998876665543 57999999998875 778999999998776
Q ss_pred cccCCc-ccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 145 DALMEP-ELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 145 ~~l~~~-~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
...... .........+++++.++|+|||.++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 643221 11222467899999999999999998864
|
... |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-10 Score=120.80 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=95.1
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF 130 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~ 130 (659)
.+...+..+... .++.+|||+|||+|.++..++..+. .++|+|+++.|+..+++.....+ .++.+.++|+.++++
T Consensus 169 ~la~~~~~l~~~---~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~ 244 (329)
T TIGR01177 169 KLARAMVNLARV---TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPL 244 (329)
T ss_pred HHHHHHHHHhCC---CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCc
Confidence 344445555443 5678999999999999988877765 89999999999998766654433 458899999999988
Q ss_pred CCCcccEEEecccccccCC--cccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 131 MDETFDVILDKGGLDALME--PELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~--~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
++++||+|++...+..... ..........+++++.++|+|||+++++......
T Consensus 245 ~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 245 SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRID 299 (329)
T ss_pred ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence 8889999998744322111 0111123679999999999999999998876433
|
This family is found exclusively in the Archaea. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-10 Score=122.50 Aligned_cols=120 Identities=14% Similarity=0.158 Sum_probs=91.8
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSM 128 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~----~~i~~~~~D~~~l 128 (659)
...+++.+.. ....+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.+++...... .++++...|+.+.
T Consensus 217 trllL~~lp~---~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 217 ARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHHhCCc---ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 3456677754 345699999999999999998874 4699999999999998876654433 3678888888653
Q ss_pred CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+++++||+|+++..++..... ......+++..++++|+|||.++++..
T Consensus 294 -~~~~~fDlIlsNPPfh~~~~~--~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 294 -VEPFRFNAVLCNPPFHQQHAL--TDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred -CCCCCEEEEEECcCcccCccC--CHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 345689999999887753211 112367899999999999999999863
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=115.53 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=86.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC---CCCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---FMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~---~~~~sFDvVi~~g 142 (659)
...+|||||||+|.++..++.. +..+|+|+|+++.+++.+.++....+ .+++++++|+.+++ ++++++|.|+...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999887 34689999999999998877654433 58999999998753 4567999999765
Q ss_pred cccccCCcccch-HHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 143 GLDALMEPELGH-KLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 143 ~l~~l~~~~~~~-~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
...+........ -....+++++.++|||||.+++.+....
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 433321100000 0025789999999999999999886643
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-10 Score=115.43 Aligned_cols=106 Identities=23% Similarity=0.317 Sum_probs=89.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-CCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-FMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-~~~~sFDvVi~~g~l~ 145 (659)
.++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++.......+.+...|+.+.+ ..+++||+|++..+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 4678999999999999999988875 8999999999999887766544456788888887764 3457999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++.+.. .+++.+.++|+|||.+++..+.
T Consensus 126 ~~~~~~-------~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 126 HVPDPA-------SFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccCCHH-------HHHHHHHHHcCCCcEEEEEecC
Confidence 886644 8899999999999999988764
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-10 Score=114.22 Aligned_cols=121 Identities=17% Similarity=0.266 Sum_probs=85.9
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEee
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D 124 (659)
|......+...++.-+......++.+|||+|||+|.++..+++. +.+.|+++|+++.|++.+.+++. ..+++.++.+|
T Consensus 50 ~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~-~~~nv~~i~~D 128 (226)
T PRK04266 50 WNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAE-ERKNIIPILAD 128 (226)
T ss_pred ECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh-hcCCcEEEECC
Confidence 44433444444444221123367889999999999999999886 33589999999999998766653 34789999999
Q ss_pred cCCC----CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 125 MTSM----QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 125 ~~~l----~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
+.+. +++ ++||+|++... ++. ....+++++.++|||||++++.
T Consensus 129 ~~~~~~~~~l~-~~~D~i~~d~~-----~p~----~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 129 ARKPERYAHVV-EKVDVIYQDVA-----QPN----QAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCCcchhhhcc-ccCCEEEECCC-----Chh----HHHHHHHHHHHhcCCCcEEEEE
Confidence 8752 223 56999985322 221 1346789999999999999994
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-10 Score=119.93 Aligned_cols=147 Identities=18% Similarity=0.242 Sum_probs=103.9
Q ss_pred CCCHhhHHHHHhhcC-----CCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEc
Q 006149 25 FTSKENWDKFFTIRG-----IGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVD 98 (659)
Q Consensus 25 f~~~eyWd~~y~~~~-----~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD 98 (659)
|...+||.. |.... ....|.|- ....-...+...+.. ....+|||+|||+|.++..+++.. ..+|+++|
T Consensus 153 ~~~~~~~~~-y~~~~l~i~~~pgvFs~~-~lD~gt~lLl~~l~~---~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vD 227 (342)
T PRK09489 153 FDADKFWKE-YQVDGLTVKTLPGVFSRD-GLDVGSQLLLSTLTP---HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSD 227 (342)
T ss_pred Cccccccee-eecCCEEEEeCCCCCCCC-CCCHHHHHHHHhccc---cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEE
Confidence 556667764 33211 12233332 222333456666653 345689999999999999998874 35899999
Q ss_pred CCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 99 FSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 99 ~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+|+.+++.+++..........++..|+.+. ..++||+|+++..+|..... .......++.++.++|+|||.++++.
T Consensus 228 is~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~--~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 228 VSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDGIQT--SLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCCccc--cHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 999999998877766555567788887653 25789999999888764322 12346799999999999999998887
Q ss_pred cC
Q 006149 179 LA 180 (659)
Q Consensus 179 ~~ 180 (659)
..
T Consensus 304 n~ 305 (342)
T PRK09489 304 NA 305 (342)
T ss_pred eC
Confidence 54
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.1e-10 Score=117.27 Aligned_cols=102 Identities=17% Similarity=0.298 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++..++..|..+|+++|+++.+++.+++...... ..+.+...+.. +..+++||+|+++...+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILAE 236 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCHH
Confidence 578999999999999999988887799999999999998877665443 24555665533 33467899999875433
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
. ...++.++.++|||||+++++.+..
T Consensus 237 ~----------l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 237 V----------IKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred H----------HHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 2 4588999999999999999988753
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.3e-10 Score=118.71 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=87.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.+..+|||+|||+|.++..+++.. ..+++++|. +.+++.++++....+ .+++++.+|+.+.+++ .+|+|+...+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~ 224 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRI 224 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhh
Confidence 466899999999999999998873 358999997 788888776655443 5799999999876665 3799999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++..+.. ..++++++++.|+|||++++.++.
T Consensus 225 lh~~~~~~-----~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 225 LYSANEQL-----STIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred hhcCChHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 98765433 568999999999999999999863
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-10 Score=118.69 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=82.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCCC-CCCCC----cccEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSM-QFMDE----TFDVI 138 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~--i~~~~~D~~~l-~~~~~----sFDvV 138 (659)
++.+|||+|||+|..+..|++.. ..+|+++|+|+.|++.+.++.....++ +.++++|+.+. +++.. ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 46799999999999999998873 248999999999999998877654444 66789999873 44332 23344
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+...+++++...+ ...+|++++++|+|||.|++....
T Consensus 143 ~~gs~~~~~~~~e-----~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 143 FPGSTIGNFTPEE-----AVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EecccccCCCHHH-----HHHHHHHHHHhcCCCCEEEEeccC
Confidence 4555677765433 679999999999999999886543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-10 Score=114.01 Aligned_cols=105 Identities=25% Similarity=0.376 Sum_probs=89.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCC-CcEEEEeecCCCCCC-CCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQFM-DETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~-~i~~~~~D~~~l~~~-~~sFDvVi~~g~l~ 145 (659)
.+.+|||+|||+|.++..+++.+. +++++|+++.+++.++++...... ++++.+.|+.+.+.. .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 468999999999999999988776 799999999999988776654444 689999998877544 37899999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++.++. .+++++.++|+|||.+++.+..
T Consensus 124 ~~~~~~-------~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 124 HVPDPQ-------AFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hCCCHH-------HHHHHHHHhcCCCcEEEEEecC
Confidence 887654 8999999999999999987754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-09 Score=104.92 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=87.1
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (659)
.......+..++.. .++.+|||+|||+|.++..++.. +..+|+++|+++.+++.++++....+ .+++++++|+.+
T Consensus 25 ~~~v~~~l~~~l~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 25 KREVRLLLISQLRL---EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred HHHHHHHHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 34555566777754 56789999999999999998865 33589999999999998876654433 578999999865
Q ss_pred -CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 128 -MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 128 -l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
++.....+|.|+..+. .. ...+++++.++|+|||++++......
T Consensus 102 ~~~~~~~~~d~v~~~~~------~~-----~~~~l~~~~~~LkpgG~li~~~~~~~ 146 (196)
T PRK07402 102 CLAQLAPAPDRVCIEGG------RP-----IKEILQAVWQYLKPGGRLVATASSLE 146 (196)
T ss_pred HHhhCCCCCCEEEEECC------cC-----HHHHHHHHHHhcCCCeEEEEEeecHH
Confidence 2222234676654221 11 45899999999999999999987643
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.3e-10 Score=114.15 Aligned_cols=110 Identities=20% Similarity=0.237 Sum_probs=83.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.+.+|||+|||+|.++..++.. +..+++++|+++.+++.+++.....+ .++.++++|+.+ ++++++||+|+++..+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 4569999999999999999886 33589999999999998877665433 469999999977 45678999999865433
Q ss_pred ccCCc-------------------ccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 146 ALMEP-------------------ELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 146 ~l~~~-------------------~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
..... .++......++.++.++|+|||.+++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 21110 0011124578999999999999998865
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-09 Score=106.12 Aligned_cols=139 Identities=18% Similarity=0.189 Sum_probs=89.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (659)
.++.+|||+|||+|.++..+++.. ..+|+++|+++.+ ..+++.++++|+.+.+ +++++||
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 578899999999999999888763 3579999999843 2357889999987743 4567899
Q ss_pred EEEecccccccCC--cc--cchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhcc-CceEEEeeeCCCCCCCC
Q 006149 137 VILDKGGLDALME--PE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF-GWKMSVHAIPQKSSSEP 211 (659)
Q Consensus 137 vVi~~g~l~~l~~--~~--~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~-~w~~~~~~i~~~~~~~~ 211 (659)
+|++.++.+.... .. ......+.++..+.++|+|||++++..+....+. .++..+.. .|...+.. ...+...
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~-~~l~~l~~~~~~~~~~~--~~~~~~~ 177 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEID-EYLNELRKLFEKVKVTK--PQASRKR 177 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHH-HHHHHHHhhhceEEEeC--CCCCCcc
Confidence 9998765321110 00 0011246899999999999999999765433322 23333322 33444332 2223334
Q ss_pred CCccEEE
Q 006149 212 SLQTFMV 218 (659)
Q Consensus 212 ~l~~f~~ 218 (659)
.-+.|++
T Consensus 178 ~~~~~~~ 184 (188)
T TIGR00438 178 SAEVYIV 184 (188)
T ss_pred cceEEEE
Confidence 4455654
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.1e-10 Score=110.35 Aligned_cols=102 Identities=23% Similarity=0.335 Sum_probs=82.8
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDE 133 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~ 133 (659)
.+.++++ |+.+|||+|||.|.+...|.+....+..|+|+++..+..+.++ .+.++++|+.+- .|+++
T Consensus 6 ~I~~~I~-----pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 6 IIAEWIE-----PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HHHHHcC-----CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhCCCC
Confidence 4667774 6899999999999999999886445899999999888766443 478999999874 58999
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+||.|+...+|.++..++ .+|+++.|+ |...+++-
T Consensus 75 sFD~VIlsqtLQ~~~~P~-------~vL~EmlRV---gr~~IVsF 109 (193)
T PF07021_consen 75 SFDYVILSQTLQAVRRPD-------EVLEEMLRV---GRRAIVSF 109 (193)
T ss_pred CccEEehHhHHHhHhHHH-------HHHHHHHHh---cCeEEEEe
Confidence 999999999999998766 889988777 43444433
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.6e-10 Score=114.94 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=83.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhh-cCCCCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~-~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||+|||+|..+..++... ..+|+++|+|+.+++.+++... ....++.++++|+.+. +++++||+|+++...
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCCc
Confidence 466799999999999999998874 4689999999999998877654 2335799999998663 345789999986432
Q ss_pred ccc-------------------CCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 145 DAL-------------------MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 145 ~~l-------------------~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
... ....++.....+++.++.++|+|||++++..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 211 0111122346789999999999999998854
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=114.11 Aligned_cols=111 Identities=19% Similarity=0.121 Sum_probs=83.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++.....+ .++.++++|+.+ ++++++||+|+++...
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 45799999999999999999873 3589999999999998877665444 469999999865 3455689999986322
Q ss_pred c------ccC------------CcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 145 D------ALM------------EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 145 ~------~l~------------~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
. .+. ..+++......++..+.++|+|||++++-..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 110 0112223467899999999999999987654
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=118.55 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=90.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC--CCCCCcccEEEecc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM--QFMDETFDVILDKG 142 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l--~~~~~sFDvVi~~g 142 (659)
..+..+||||||+|..+..+|.. +..+++|+|+++.+++.+.++....+ .++.++++|+..+ .++++++|.|+...
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 45679999999999999999987 34689999999999999987775544 6899999999764 57789999999765
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
...+..... -+-....++.++.|+|+|||.+.+.|-..+.+
T Consensus 201 PdPW~KkrH-RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 201 PVPWDKKPH-RRVISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred CCCccccch-hhccHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 433321110 00013689999999999999999998765543
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=107.51 Aligned_cols=125 Identities=22% Similarity=0.335 Sum_probs=97.2
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC-CCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-MQF 130 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~-l~~ 130 (659)
+....-++++..+.+ ...-|||||||+|..+..|.+.|. ..+|+|+|+.|++.+.++..+ -.++.+||-. +||
T Consensus 35 em~eRaLELLalp~~-~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e----gdlil~DMG~Glpf 108 (270)
T KOG1541|consen 35 EMAERALELLALPGP-KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE----GDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHHHHHhhCCCC-CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh----cCeeeeecCCCCCC
Confidence 344445555554222 467999999999999999999995 899999999999988764322 3578888875 599
Q ss_pred CCCcccEEEecccccccCCcc----cchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 131 MDETFDVILDKGGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~----~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
..++||.+|+..++.++.+.. .....+..++..++.+|++|++.++--+...
T Consensus 109 rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 109 RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 999999999999888776433 2234478889999999999999999887643
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-09 Score=103.45 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCC-C--cEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-D--MRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~-~--i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++....... + +.++++|+.+. +.+.+||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCC
Confidence 467799999999999999999886 5999999999999988766544332 2 88999998773 45568999998765
Q ss_pred ccccCC--------------cccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALME--------------PELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~--------------~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+..... ...+......+++++.++|+|||.+++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 433110 0011223567899999999999998877643
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.8e-10 Score=118.58 Aligned_cols=118 Identities=24% Similarity=0.293 Sum_probs=89.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc-------CC----CCcEEEEeecCCCC----CCC
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-------DR----SDMRWRVMDMTSMQ----FMD 132 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~-------~~----~~i~~~~~D~~~l~----~~~ 132 (659)
++.+|||+|||.|.....+...+...++|+|+++..|+++++|... .. -...++++|..... +++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999999999989888888999999999999999999822 11 13567788876542 333
Q ss_pred --CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcch
Q 006149 133 --ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL 188 (659)
Q Consensus 133 --~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l 188 (659)
..||+|-|..++|+....+ ..++.+|.++...|+|||+|+.+++....+...+
T Consensus 142 ~~~~FDvVScQFalHY~Fese---~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l 196 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESE---EKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRL 196 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSH---HHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCH
T ss_pred cCCCcceeehHHHHHHhcCCH---HHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHH
Confidence 4999999999999987655 3488999999999999999999998766554433
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-09 Score=105.69 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=105.2
Q ss_pred CCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHH
Q 006149 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (659)
Q Consensus 25 f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i 104 (659)
|-...|-...|....-......+...+.....+.+++.. .++.+|||||||+|..+..|++..- +|+.+|..+...
T Consensus 32 FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~ 107 (209)
T COG2518 32 FVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELA 107 (209)
T ss_pred ccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHH
Confidence 444444444455442222233344456667777788876 7899999999999999999999854 999999999999
Q ss_pred HHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 105 SDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 105 ~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.++++....+ .++.++++|...---+.+.||.|+..++...++ ..+.+.|++||++++-.-
T Consensus 108 ~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP-------------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 108 EQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP-------------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred HHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCC-------------HHHHHhcccCCEEEEEEc
Confidence 99988776655 589999999887533458999999988877653 457789999999998775
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=111.93 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=74.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCC--CcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~--~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++......- .+.+..+ +.+||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------~~~fD~Vvani~~ 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------DLKADVIVANILA 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------CCCcCEEEEcCcH
Confidence 36789999999999999988888876799999999999988776644332 1222111 2279999986432
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+. ...++.++.++|||||++++.....
T Consensus 190 ~~----------~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 190 NP----------LLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred HH----------HHHHHHHHHHhcCCCcEEEEEECcH
Confidence 21 4588999999999999999987653
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=111.61 Aligned_cols=122 Identities=19% Similarity=0.249 Sum_probs=88.5
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~ 123 (659)
|..-...|...++.-+......++.+|||+|||+|.++..+++. + ...|+++|+++.+++.+.+.+. ..+++.++..
T Consensus 110 w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~ 188 (293)
T PTZ00146 110 WNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIE 188 (293)
T ss_pred eCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEEC
Confidence 44444445544544444444578899999999999999999987 3 3589999999988877766543 3478999999
Q ss_pred ecCCC---CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 124 DMTSM---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 124 D~~~l---~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
|+... ....++||+|++... .. + ....++.++.++|||||+|++.
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva---~p--d----q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVA---QP--D----QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCC---Cc--c----hHHHHHHHHHHhccCCCEEEEE
Confidence 98752 223468999987653 11 1 1446677899999999999994
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=118.12 Aligned_cols=111 Identities=10% Similarity=0.047 Sum_probs=84.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC-CCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM-DETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~-~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++.....+.+++++++|+.+..++ .++||+|+++...-
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 4569999999999999998875 446899999999999988777655556899999999765332 46899999976431
Q ss_pred c------------------cCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 146 A------------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 146 ~------------------l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
. +...+++....+.++..+.+.|+|||.+++..
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 1 11112233347788999999999999987644
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.9e-10 Score=125.08 Aligned_cols=98 Identities=18% Similarity=0.275 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-------
Q 006149 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 588 (659)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~------- 588 (659)
..||+++++ +++.. +++|++||+||+|+|.+++.+.++.+..++++|||||+|+++|+++|.++
T Consensus 281 ~~y~e~l~~-~~l~~--------~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~ 351 (521)
T PRK03612 281 YRYHEALVH-PAMAA--------SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGAL 351 (521)
T ss_pred HHHHHHHHH-HHHhh--------CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcccc
Confidence 569998876 34433 36789999999999999999888744479999999999999999965442
Q ss_pred CCCCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 589 QDKSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 589 ~d~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+|+|+++. .++++.+|++.++++| +|+|+++.|.
T Consensus 352 ~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L---~pgG~lv~~~ 415 (521)
T PRK03612 352 DDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRL---APDGLLVVQS 415 (521)
T ss_pred CCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhc---CCCeEEEEec
Confidence 46777332 2588999999999999 9999999976
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-09 Score=107.25 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=73.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC-C-CCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-M-QFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~-l-~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++..+++.....++|+|+|+.+++.+.+ .+++++++|+.+ + ++++++||+|++.++++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA------RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH------cCCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 467999999999999999987644578999999999886643 247889999876 4 46778999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhcccc
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKS 170 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkp 170 (659)
++.++. .+++++.|.+++
T Consensus 87 ~~~d~~-------~~l~e~~r~~~~ 104 (194)
T TIGR02081 87 ATRNPE-------EILDEMLRVGRH 104 (194)
T ss_pred cCcCHH-------HHHHHHHHhCCe
Confidence 987654 788888887653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=112.72 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=82.4
Q ss_pred CeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc-
Q 006149 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD- 145 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~- 145 (659)
.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++.....+ .+++++++|+.+. +++++||+|+++....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 689999999999999998873 4589999999999998877665443 4699999998652 3456899999873211
Q ss_pred -----c------------cCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 146 -----A------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 146 -----~------------l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
. +...+++......+++.+.++|+|||++++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 111112233467899999999999999998553
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-09 Score=92.57 Aligned_cols=101 Identities=29% Similarity=0.351 Sum_probs=82.1
Q ss_pred eEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhh-cCCCCcEEEEeecCCCCC-CCCcccEEEecccccccC
Q 006149 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQF-MDETFDVILDKGGLDALM 148 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~-~~~~~i~~~~~D~~~l~~-~~~sFDvVi~~g~l~~l~ 148 (659)
+|+|+|||+|..+..++..+..+++++|.++.+++.+.+... ....++++...|+.+... ..++||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 589999999999999988545699999999999987763332 233678999999988754 56789999999998874
Q ss_pred CcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 149 ~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
.. ....+++.+.+.|+|||.+++.
T Consensus 80 ~~-----~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VE-----DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hh-----HHHHHHHHHHHHcCCCCEEEEE
Confidence 11 2569999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=108.81 Aligned_cols=137 Identities=16% Similarity=0.143 Sum_probs=101.7
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC--CC
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--FM 131 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--~~ 131 (659)
|..+... ....+|||+|||+|.++..++++ ...+|++||+.+.+.+.+.+....+. .+++++++|+.++. ..
T Consensus 36 L~~~~~~---~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 36 LAAFAPV---PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHhhccc---ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc
Confidence 4455543 34789999999999999999998 55799999999999997766544332 68999999999873 44
Q ss_pred CCcccEEEecccccccCCc--ccch---------HHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhcc-CceE
Q 006149 132 DETFDVILDKGGLDALMEP--ELGH---------KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF-GWKM 198 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~~~--~~~~---------~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~-~w~~ 198 (659)
..+||+|+|+..++..... ++.. ...+..++...++||+||++.++... .....+....+. .|..
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~--erl~ei~~~l~~~~~~~ 189 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP--ERLAEIIELLKSYNLEP 189 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH--HHHHHHHHHHHhcCCCc
Confidence 4579999999888765544 1111 11889999999999999999998753 333444454433 4433
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-09 Score=111.70 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=82.5
Q ss_pred CeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc-
Q 006149 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD- 145 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~- 145 (659)
.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++.....+ .++.++++|+.+ +++..+||+|+++...-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 699999999999999999873 3589999999999998877655443 349999999876 44445899999863211
Q ss_pred -----------------ccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 146 -----------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 146 -----------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
++...+++......++..+.++|+|||++++...
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 1111222334578999999999999999887554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-09 Score=111.56 Aligned_cols=120 Identities=17% Similarity=0.299 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++...++.|..+|+|+|+++.+++.+++....++-.-.+...... ....++||+|+++=..+-
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~--~~~~~~~dlvvANI~~~v 237 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE--DLVEGKFDLVVANILADV 237 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS--CTCCS-EEEEEEES-HHH
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec--ccccccCCEEEECCCHHH
Confidence 367899999999999999999999989999999999999988777666532233332222 233589999998755443
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEE
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMS 199 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~ 199 (659)
+..++..+.++|+|||+++++-+.... ...+...+..+|.+.
T Consensus 238 ----------L~~l~~~~~~~l~~~G~lIlSGIl~~~-~~~v~~a~~~g~~~~ 279 (295)
T PF06325_consen 238 ----------LLELAPDIASLLKPGGYLILSGILEEQ-EDEVIEAYKQGFELV 279 (295)
T ss_dssp ----------HHHHHHHCHHHEEEEEEEEEEEEEGGG-HHHHHHHHHTTEEEE
T ss_pred ----------HHHHHHHHHHhhCCCCEEEEccccHHH-HHHHHHHHHCCCEEE
Confidence 457889999999999999998876433 234444444455553
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=112.66 Aligned_cols=120 Identities=21% Similarity=0.257 Sum_probs=97.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---C----CcEEEEeecCCC------CCCCC
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---S----DMRWRVMDMTSM------QFMDE 133 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~----~i~~~~~D~~~l------~~~~~ 133 (659)
++.+.++++|||.|.....+-+.|...++|+||++..|.++++|+..-. . .+.|+++|.+.. ++.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 3688999999999999998888898899999999999999998876422 1 367899998753 44556
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchh
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLF 189 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~ 189 (659)
+||+|-|..++|+....+. .+..+|.++.+.|+|||+||-..+....+...+-
T Consensus 196 ~fDivScQF~~HYaFetee---~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr 248 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEE---SARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLR 248 (389)
T ss_pred CcceeeeeeeEeeeeccHH---HHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHH
Confidence 6999999999998765442 3889999999999999999988876555544443
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-08 Score=96.73 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=92.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhc-CCCCcEEEEeecCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTS 127 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~-~~~~i~~~~~D~~~ 127 (659)
-.+++...+..|.. .++++++|||||+|..+.+++..+ ..+|+++|-++.+++...+...+ ..+++..+.+|+-+
T Consensus 19 K~EIRal~ls~L~~---~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~ 95 (187)
T COG2242 19 KEEIRALTLSKLRP---RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPE 95 (187)
T ss_pred HHHHHHHHHHhhCC---CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchH
Confidence 45666666666654 789999999999999999998554 37999999999999866444333 23889999999877
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
.--...+||.|+..|. -. .+.+++.+...|||||+++..-...+.
T Consensus 96 ~L~~~~~~daiFIGGg-~~----------i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 96 ALPDLPSPDAIFIGGG-GN----------IEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred hhcCCCCCCEEEECCC-CC----------HHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 5212227999999887 32 458999999999999999987765444
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.9e-09 Score=108.65 Aligned_cols=123 Identities=17% Similarity=0.263 Sum_probs=89.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~--i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++...++.|...|+|+|+.+.+++.+++....++-. +.....+....+ ..++||+|+++=..+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANILA~ 240 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANILAE 240 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehhhHH
Confidence 68999999999999999999999989999999999999888766555422 223333333332 236999999874222
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh-ccCceEEEee
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHA 202 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~-~~~w~~~~~~ 202 (659)
- ...+...+.+.|||||+++++-..... .+...+.+ ..+|.+.-..
T Consensus 241 v----------l~~La~~~~~~lkpgg~lIlSGIl~~q-~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 241 V----------LVELAPDIKRLLKPGGRLILSGILEDQ-AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred H----------HHHHHHHHHHHcCCCceEEEEeehHhH-HHHHHHHHHhCCCeEeEEE
Confidence 2 568999999999999999999876444 33344444 4466554443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-09 Score=108.71 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=88.9
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEE
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRV 122 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~-~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~ 122 (659)
.....+.+...+++++.. +++.+|||||||+|..+..|+.. |. ..|++||+.+...+.++++....+ .++.+++
T Consensus 53 ~~is~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 53 QTISAPSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp EEE--HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred eechHHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 344556777778888875 78999999999999999999886 43 469999999999999988776544 5899999
Q ss_pred eecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 123 MDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 123 ~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+|...---+.+.||.|+..++...+ -..|.+.|++||++++.--
T Consensus 130 gdg~~g~~~~apfD~I~v~~a~~~i-------------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAAVPEI-------------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSBBSS---------------HHHHHTEEEEEEEEEEES
T ss_pred cchhhccccCCCcCEEEEeeccchH-------------HHHHHHhcCCCcEEEEEEc
Confidence 9987754345789999998877643 3568889999999998664
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-09 Score=103.61 Aligned_cols=82 Identities=23% Similarity=0.349 Sum_probs=70.5
Q ss_pred EEEcCCHHHHHHHHHHhhcC----CCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhcccc
Q 006149 95 TNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 170 (659)
Q Consensus 95 tgvD~S~~~i~~~~~~~~~~----~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkp 170 (659)
+|+|+|+.|++.++++.... ..+++|+++|+.++|+++++||+|++..+++++.+. .+++++++|+|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~-------~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR-------LRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH-------HHHHHHHHHHcCc
Confidence 58999999999887665321 247999999999999999999999999999988654 4999999999999
Q ss_pred CeEEEEEEcCCch
Q 006149 171 GGKFVCLTLAESH 183 (659)
Q Consensus 171 GG~lvi~~~~~~~ 183 (659)
||++++.++..+.
T Consensus 74 GG~l~i~d~~~~~ 86 (160)
T PLN02232 74 GSRVSILDFNKSN 86 (160)
T ss_pred CeEEEEEECCCCC
Confidence 9999999987543
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-09 Score=107.81 Aligned_cols=103 Identities=13% Similarity=0.177 Sum_probs=76.1
Q ss_pred CeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCC--CcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~--~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
..++|+|||||..+.-++.+ +.+|+|+|+|+.||+.+.+....... ..+....++.++--.+++.|+|++..++|++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 38999999999777777777 67999999999999866544322221 1222333344443337899999999999998
Q ss_pred CCcccchHHHHHHHHHHHhccccCe-EEEEEEcCC
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLAE 181 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG-~lvi~~~~~ 181 (659)
. .++++++++|+||+.| .+.+..+.+
T Consensus 114 d--------le~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 114 D--------LERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred c--------hHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 4 4599999999998765 777777764
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=106.05 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=98.4
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCc-EEEEeecCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQF 130 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i-~~~~~D~~~l~~ 130 (659)
=...|++.+.. ....+|||+|||.|.++..|++.. ..+++.+|++..+++.+++....+.... .+...|+.+ +.
T Consensus 146 GS~lLl~~l~~---~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v 221 (300)
T COG2813 146 GSRLLLETLPP---DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PV 221 (300)
T ss_pred HHHHHHHhCCc---cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cc
Confidence 34567777765 456699999999999999999884 5799999999999998877766565443 566666655 44
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 192 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~ 192 (659)
.+ +||.|+++..+|.-..- ......+++....+.|++||.+.++..........+-+.|
T Consensus 222 ~~-kfd~IisNPPfh~G~~v--~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F 280 (300)
T COG2813 222 EG-KFDLIISNPPFHAGKAV--VHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF 280 (300)
T ss_pred cc-cccEEEeCCCccCCcch--hHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence 43 99999999999853322 2233669999999999999999988875444333333333
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.1e-09 Score=109.57 Aligned_cols=113 Identities=18% Similarity=0.141 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMT 126 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~ 126 (659)
.+.+...+.+.+.. .++.+|||+|||+|.++..+++.. .+.|+++|+++.+++.++++....+ .++.++++|..
T Consensus 65 ~p~l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~ 141 (322)
T PRK13943 65 QPSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGY 141 (322)
T ss_pred cHHHHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChh
Confidence 34555556666554 567899999999999999998863 2469999999999998877665433 57899999987
Q ss_pred CCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 127 ~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+.....++||+|++...+.. ....+.+.|+|||++++..
T Consensus 142 ~~~~~~~~fD~Ii~~~g~~~-------------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVPEFAPYDVIFVTVGVDE-------------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hcccccCCccEEEECCchHH-------------hHHHHHHhcCCCCEEEEEe
Confidence 76555578999998654443 3455788999999988865
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-08 Score=112.45 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=89.7
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--CCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--FMD 132 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--~~~ 132 (659)
.+...+.. .++.+|||+|||+|..+..+++.+. ..|+++|+++.+++.++++....+.+++++++|+.+++ ++.
T Consensus 235 ~~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 235 LAATLLAP---QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHcCC---CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhccc
Confidence 34445543 5788999999999999999988743 58999999999999998877665556889999998764 345
Q ss_pred CcccEEEeccccccc------------CCcccc---hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 133 ETFDVILDKGGLDAL------------MEPELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l------------~~~~~~---~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++||.|++....... ..+++- .....+++..+.++|||||+++.++.+
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 789999954322111 010000 012458999999999999999988864
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-08 Score=96.86 Aligned_cols=102 Identities=12% Similarity=0.122 Sum_probs=75.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++.. ..++++++++|+.++++++.+||.|+++-.++.
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~-~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFA-AADNLTVIHGDALKFDLPKLQPYKVVGNLPYNI 89 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhc-cCCCEEEEECchhcCCccccCCCEEEECCCccc
Confidence 467899999999999999999885 489999999999998876653 346899999999999887778999998755542
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
..+ .+.++++.. .+.++|.+++-.
T Consensus 90 -~~~-----~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 90 -STP-----ILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred -HHH-----HHHHHHhcC--CCcceEEEEEEH
Confidence 211 133333321 234677776543
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=103.68 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=80.0
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-C-CCCCcccEEEeccccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-Q-FMDETFDVILDKGGLD 145 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l-~-~~~~sFDvVi~~g~l~ 145 (659)
..+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++.....+ ++++++|+.+. + ...++||+|+++....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 458999999999999999875 33489999999999998766654332 58899998763 2 1135799999875432
Q ss_pred c------c-------------CCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 A------L-------------MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~------l-------------~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
. + ....++......++..+.++|+|||++++....
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 1 1 111122233678899999999999999987654
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=106.20 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=82.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc------CCCCcEEEEeecCCC-CCCCCcccEEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------DRSDMRWRVMDMTSM-QFMDETFDVIL 139 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~------~~~~i~~~~~D~~~l-~~~~~sFDvVi 139 (659)
.+.+||++|||+|..+..+++. +..+|++||+++.+++.+++.... ..++++++.+|+... ...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999887 567999999999999988776532 247899999998774 33467899999
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+..+-.... .. .-....+++.+++.|+|||++++..
T Consensus 156 ~D~~dp~~~-~~--~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGP-AE--GLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCc-hh--hhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 754322211 10 0013578899999999999998754
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-08 Score=103.08 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=82.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCC-CCCCCcccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSM-QFMDETFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l-~~~~~sFDvVi~~g~ 143 (659)
++.+|||||||+|.++..++.. +..+|+++|+++.+++.+++..... .++++++++|+.+. .-..++||+|+...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 4579999999999999988876 4468999999999999887765433 36899999998764 22236899999642
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
++....+. .-....+++.+.+.|+|||++++..+..+
T Consensus 145 ~~~~~~~~--~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 145 FDGEGIID--ALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred CCCCCCcc--ccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 22111010 00135899999999999999999665543
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-08 Score=111.79 Aligned_cols=114 Identities=23% Similarity=0.218 Sum_probs=86.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC----CCCCcccEEE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----FMDETFDVIL 139 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~----~~~~sFDvVi 139 (659)
.++.+|||+|||+|..+..+++. +.+.|+++|+++.+++.++++....+ .++.++++|+.+++ +..++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 57889999999999999999876 23589999999999998877765544 56899999998875 4457899999
Q ss_pred ec------ccccccCCc------ccc---hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 140 DK------GGLDALMEP------ELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 140 ~~------g~l~~l~~~------~~~---~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+. |++..-++. ++- .....++|.++.++|||||+++.++.+
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 53 333322211 000 011468899999999999999988765
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-08 Score=110.42 Aligned_cols=114 Identities=21% Similarity=0.304 Sum_probs=86.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CCCCcccEEEecc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FMDETFDVILDKG 142 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~~~sFDvVi~~g 142 (659)
.++.+|||+|||+|..+..++.. +.++|+++|+++.+++.++++....+ .++.+.++|+.+++ +.+++||.|++..
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 57889999999999999998876 24689999999999999987776544 46889999998875 4467899999633
Q ss_pred cccccCC----ccc-------c----hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 143 GLDALME----PEL-------G----HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 143 ~l~~l~~----~~~-------~----~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
....... ++. . .....++|.++.++|||||+++.++.+
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2221111 110 0 012467899999999999999999876
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=110.78 Aligned_cols=122 Identities=17% Similarity=0.155 Sum_probs=87.5
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEE--EEeecCCCCC--
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRW--RVMDMTSMQF-- 130 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~--~~~D~~~l~~-- 130 (659)
.+...+.. .++.+|||+|||+|..+..+++. +.+.|+++|+++.+++.++++....+-.+.+ .++|....++
T Consensus 229 ~~~~~L~~---~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 229 WVATWLAP---QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHhCC---CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence 44455543 57889999999999999999876 4458999999999999887777554433434 6667665543
Q ss_pred CCCcccEEEec------ccccccCCc------ccc---hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 131 MDETFDVILDK------GGLDALMEP------ELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 131 ~~~sFDvVi~~------g~l~~l~~~------~~~---~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.++||.|++. |++...++. .+- .....++|.++.++|||||+++.++.+
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 46789999953 344432221 000 012468999999999999999999876
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.5e-08 Score=102.68 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=85.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++.+|||+|||+|..+..+++. + .+.|+++|+++.+++.++++....+ .++.+++.|+..++...++||+|+....
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 57889999999999999998875 2 3589999999999998887765544 5789999998877655567999995322
Q ss_pred cccc----CCccc----ch-------HHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDAL----MEPEL----GH-------KLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l----~~~~~----~~-------~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.... .+++. .. ....++|..+.++|||||+++.++.+
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1111 01110 00 12456999999999999999998876
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4e-08 Score=109.79 Aligned_cols=114 Identities=23% Similarity=0.155 Sum_probs=84.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEec--
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDK-- 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~-- 141 (659)
.++.+|||+|||+|..+..+++. +.+.|+++|+|+.+++.++++....+ .+++++++|+.+++ ++++||+|+..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 56789999999999999888874 23589999999999998887775544 46899999998875 45789999952
Q ss_pred ----ccccccC------Ccccc---hHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 142 ----GGLDALM------EPELG---HKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 142 ----g~l~~l~------~~~~~---~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
|++..-+ +++.- .....++|.++.++|||||+++..+.+-
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2222100 10000 0113478999999999999999999763
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.1e-08 Score=102.12 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=85.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
...+|||+|||+|.++..++... ..+|+++|+++.+++.++++ .+++.++++|+.+... +.+||+|+++..+.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n----~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL----LPEAEWITSDVFEFES-NEKFDVVISNPPFGK 138 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CcCCEEEECchhhhcc-cCCCcEEEEcCCccc
Confidence 45799999999999998887752 35899999999999877553 2578999999998753 468999999998887
Q ss_pred cCCcccch-----------HH--HHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 147 LMEPELGH-----------KL--GNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 147 l~~~~~~~-----------~~--~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
....+... .. +.+.+.....+|+|+|.++++-.+.+.
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~ 188 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY 188 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc
Confidence 54332111 00 367889999999999988777544444
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.2e-08 Score=112.00 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=81.8
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
+.+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++.....+ .++.++++|+.+ .++.++||+|+++....
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 468999999999999988865 44689999999999998877654443 468999999865 33456899999864322
Q ss_pred c-------------------cCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 146 A-------------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 146 ~-------------------l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
. +...+++......+++.+.++|+|||.+++..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 11122233347788999999999999988743
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=9e-08 Score=104.93 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=93.9
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcE
Q 006149 43 SFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMR 119 (659)
Q Consensus 43 ~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~ 119 (659)
...||-+....+..+..+. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++....++ .+++
T Consensus 201 ktG~flDqr~~R~~~~~~~------~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~ 274 (396)
T PRK15128 201 KTGYYLDQRDSRLATRRYV------ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAE 274 (396)
T ss_pred ccCcChhhHHHHHHHHHhc------CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEE
Confidence 3346666555555555553 467999999999999988776676799999999999998877665544 3689
Q ss_pred EEEeecCCCC--C--CCCcccEEEecccccccCCcc--cchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 120 WRVMDMTSMQ--F--MDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 120 ~~~~D~~~l~--~--~~~sFDvVi~~g~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++|+.+.- + ..++||+|++......-.... ........++....++|+|||.+++.+.+
T Consensus 275 ~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 275 FVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999998751 2 246899999765432211000 00112567777889999999999987765
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-07 Score=110.21 Aligned_cols=130 Identities=17% Similarity=0.075 Sum_probs=93.9
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEE
Q 006149 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWR 121 (659)
Q Consensus 45 ewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~ 121 (659)
.+|-+....+..+.++. ++.+|||+|||+|.++..++..|..+|++||+|+.+++.+++....++ .+++++
T Consensus 521 G~flDqr~~R~~~~~~~------~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i 594 (702)
T PRK11783 521 GLFLDHRPTRRMIGQMA------KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLI 594 (702)
T ss_pred eECHHHHHHHHHHHHhc------CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEE
Confidence 35555555565665554 357999999999999999999887789999999999998877665443 368999
Q ss_pred EeecCCCC-CCCCcccEEEecccccccCCc----ccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 122 VMDMTSMQ-FMDETFDVILDKGGLDALMEP----ELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 122 ~~D~~~l~-~~~~sFDvVi~~g~l~~l~~~----~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++|+.+.- -..++||+|++......-... .........++..+.++|+|||.+++.+..
T Consensus 595 ~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 595 QADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred EccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99987631 114689999975432211000 011123668899999999999999887654
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.1e-08 Score=106.91 Aligned_cols=121 Identities=17% Similarity=0.259 Sum_probs=87.3
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--C
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--F 130 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~ 130 (659)
.+...+.. .++.+|||+|||+|..+..+++. +.+.|+++|+++.+++.++++....+ .++.++++|+.++. +
T Consensus 241 lv~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDP---KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCC---CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh
Confidence 34445543 56789999999999999999876 34689999999999998877665444 46899999998763 3
Q ss_pred CCCcccEEEecccccccC----Cccc----ch-------HHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 131 MDETFDVILDKGGLDALM----EPEL----GH-------KLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~----~~~~----~~-------~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+ ++||+|++........ .++. .+ .....++..+.++|||||+++..+.+
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3 7899999754221110 0000 00 11356899999999999999987754
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=99.13 Aligned_cols=118 Identities=20% Similarity=0.232 Sum_probs=85.1
Q ss_pred eEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccc--
Q 006149 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDA-- 146 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~-- 146 (659)
+|||+|||+|.++..++.... .+|+|+|+|+.+++.+++.+...+ .++.+++.|..+- .. ++||+|+++...=.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-LR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-cC-CceeEEEeCCCCCCCc
Confidence 799999999999999998853 599999999999998876665555 5566777776663 33 48999998753211
Q ss_pred ----------------cCCcccchHHHHHHHHHHHhccccCeEEEEEEc-CCchhhcchhh
Q 006149 147 ----------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL-AESHVLGLLFP 190 (659)
Q Consensus 147 ----------------l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~-~~~~~~~~l~~ 190 (659)
+....++......++.++.+.|+|||.+++-.- .+......++.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~ 251 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFE 251 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHH
Confidence 111123334589999999999999999888664 44433333333
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.2e-08 Score=98.23 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=81.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCC-cEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~-i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
...+.||.|||-|+.|..+.-.-+..|..||..+.+++.+++......++ ..+.+..+.++..+.++||+||+.+++.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 46799999999999998886666789999999999999998766543334 57889999988656689999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.+.+ +-++|+++...|+|+|.+++-+.
T Consensus 135 LTD~d-----lv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 135 LTDED-----LVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp S-HHH-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHH-----HHHHHHHHHHhCcCCcEEEEEec
Confidence 98876 88999999999999999998553
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-07 Score=96.89 Aligned_cols=102 Identities=16% Similarity=0.040 Sum_probs=79.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-----CCCCccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-----FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-----~~~~sFD 136 (659)
.++.+|||+|||+|..+..++.. +.++|+++|+++.+++.+++.....+ .+++++.+|+.+. + .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 35689999999999998888765 34699999999999998887765554 5799999999764 1 1246899
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+|+.... ......++..+.++|+|||.+++..
T Consensus 147 ~VfiDa~----------k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD----------KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC----------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9985321 1125688999999999999987754
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-07 Score=99.68 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=81.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC--CCCCCcccEE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM--QFMDETFDVI 138 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l--~~~~~sFDvV 138 (659)
..+.+||+||||.|..+..++++. ..+|+.||+++.+++.+++.... ..++++++.+|+... ..++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 356899999999999999999884 46899999999999988776532 247899999997654 2235789999
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+....-.... .. .-.-..+++.+++.|+|||+++...
T Consensus 170 i~D~~dp~~~-~~--~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGP-AQ--ELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCc-hh--hhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9754322111 10 0014578999999999999997643
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=97.31 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=82.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.+..+|||||+|+|.++..+++. +.-+++..|. +.+++.+.+ .++++++.+|+. -++|. +|+++...+||
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 45579999999999999999877 4458999998 767776655 678999999999 57765 99999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccC--eEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSG--GKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpG--G~lvi~~~~ 180 (659)
.+.+.+ ...+|+++++.|+|| |++++++..
T Consensus 170 ~~~d~~-----~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 170 DWSDED-----CVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GS-HHH-----HHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hcchHH-----HHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 987655 789999999999999 999999865
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.9e-07 Score=93.06 Aligned_cols=101 Identities=14% Similarity=0.221 Sum_probs=76.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc----CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA----GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~----g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.+.+|||+|||+|.++..++.. +..+|+++|+++.+++.+++. .+++.++++|+...++ +++||+|+++.-
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n----~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI----VPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh----ccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 3679999999999999988764 235899999999999877543 2468999999987665 478999999887
Q ss_pred ccccCCccc-----chHHHHHHHHHHHhccccCeE
Q 006149 144 LDALMEPEL-----GHKLGNQYLSEVKRLLKSGGK 173 (659)
Q Consensus 144 l~~l~~~~~-----~~~~~~~~l~ei~rvLkpGG~ 173 (659)
+..+..... +......++..+.+++++|+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 775442221 112366788888886676664
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-07 Score=90.12 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=77.9
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 006149 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (659)
Q Consensus 44 fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~ 123 (659)
.|.|.....+...+.........-.+.+|+|+|||||.++...+-.|...|+|+|+++.+++.+++...+...++.|+++
T Consensus 21 LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~ 100 (198)
T COG2263 21 LEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVA 100 (198)
T ss_pred ceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEc
Confidence 34444445555544444432223456789999999999999999999889999999999999887777666678999999
Q ss_pred ecCCCCCCCCcccEEEeccccccc
Q 006149 124 DMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 124 D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
|+.++. +.||.|+.+..+...
T Consensus 101 dv~~~~---~~~dtvimNPPFG~~ 121 (198)
T COG2263 101 DVSDFR---GKFDTVIMNPPFGSQ 121 (198)
T ss_pred chhhcC---CccceEEECCCCccc
Confidence 999974 679999988777654
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.9e-07 Score=101.85 Aligned_cols=131 Identities=9% Similarity=0.123 Sum_probs=87.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC---
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM--- 128 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l--- 128 (659)
+...+.+++.. .++.+|||+|||+|.++..|+..+ .+|+|+|+|+.+++.+++.+...+ .+++++++|+.+.
T Consensus 285 l~~~vl~~l~~---~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 285 MVARALEWLDP---QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHhcC---CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh
Confidence 33344555543 467899999999999999999886 599999999999998877654433 5799999998753
Q ss_pred -CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEE
Q 006149 129 -QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMS 199 (659)
Q Consensus 129 -~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~ 199 (659)
++.+++||+|+....-.. ....++.+.+ ++|++.++++. ....+.+.+......+|.+.
T Consensus 361 ~~~~~~~fD~Vi~dPPr~g----------~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl~~L~~~gY~l~ 420 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRAG----------AAEVMQALAK-LGPKRIVYVSC-NPATLARDAGVLVEAGYRLK 420 (443)
T ss_pred hhhhcCCCCEEEECcCCcC----------hHHHHHHHHh-cCCCeEEEEEe-ChHHhhccHHHHhhCCcEEE
Confidence 344578999986432221 2345555544 68887766664 32333333333334456554
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-07 Score=96.41 Aligned_cols=109 Identities=21% Similarity=0.248 Sum_probs=79.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDvVi~ 140 (659)
.+.+||++|||+|..+..+++.+ ..+++++|+++.+++.+++.... ..++++++.+|..+. ....++||+|+.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34599999999999999888775 57899999999999988765432 236788888887653 222478999997
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
...... .... .-....+++.+.+.|+|||++++...
T Consensus 152 D~~~~~-~~~~--~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 152 DSTDPV-GPAE--TLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred eCCCCC-Cccc--chhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 544221 1111 00135888999999999999998743
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.2e-08 Score=101.19 Aligned_cols=98 Identities=23% Similarity=0.280 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc-------CCC
Q 006149 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-------GFT 588 (659)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F-------gl~ 588 (659)
..||+.++.. ++- +.+...+|||||+|.|.-.+.|.++-...+|+.||+||.|+++|++-- |--
T Consensus 273 ~RYhEsLV~p-als--------~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf 343 (508)
T COG4262 273 YRYHESLVYP-ALS--------SVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSF 343 (508)
T ss_pred hhhhheeeec-ccc--------cccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCc
Confidence 4699987752 221 124567999999999999999998743679999999999999998443 222
Q ss_pred CCCCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 589 QDKSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 589 ~d~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.|+|+.|+ ..||+.|||...++.| +++|+|++|.
T Consensus 344 ~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l---~e~Gl~VvQa 407 (508)
T COG4262 344 SDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHL---AETGLMVVQA 407 (508)
T ss_pred cCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhc---CcCceEEEec
Confidence 68899655 3589999999999999 9999999988
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-08 Score=100.52 Aligned_cols=101 Identities=25% Similarity=0.313 Sum_probs=78.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDvVi~~g~l 144 (659)
.+-.++||+|||||..+..|-+.-. .++|+|+|+.|++.+.++- .-=+..++|+..+ ...++.||+|.+..++
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eKg----~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEKG----LYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhcc----chHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 4578999999999999999877743 8999999999998765442 2223344444433 1456789999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.++...+ .++.-+...|+|||.|.++.-
T Consensus 199 ~YlG~Le-------~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 199 PYLGALE-------GLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred Hhhcchh-------hHHHHHHHhcCCCceEEEEec
Confidence 9988755 889999999999999998763
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.6e-07 Score=93.79 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=94.2
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEe-ecCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVM-DMTSM 128 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~-D~~~l 128 (659)
+.+...+.++... .++..|||.-||||.+.....-.|. +++|+|++..|++-++.....-+ ....+..+ |++++
T Consensus 183 P~lAR~mVNLa~v---~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 183 PRLARAMVNLARV---KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred HHHHHHHHHHhcc---ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 4455556666554 6788999999999999999988887 99999999999998755443222 34545555 99999
Q ss_pred CCCCCcccEEEecccccccCCccc--chHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 129 QFMDETFDVILDKGGLDALMEPEL--GHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~--~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+++.+||.|.+-...--...... -..+..++|+.+.++|++||++++...-
T Consensus 259 pl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~ 312 (347)
T COG1041 259 PLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR 312 (347)
T ss_pred CCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 999889999997543322111111 1245889999999999999999999873
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-07 Score=93.21 Aligned_cols=115 Identities=20% Similarity=0.249 Sum_probs=82.1
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCC---CCCCCcccEEEeccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM---QFMDETFDVILDKGG 143 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~-~~~i~~~~~D~~~l---~~~~~sFDvVi~~g~ 143 (659)
...+||||||.|.+...+|.. +..+++|+|++...+..+.++.... ..|+.++++|+..+ -++++++|-|+....
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 449999999999999999987 5579999999999999888776654 47999999999883 255789999985432
Q ss_pred ccccCCcccchH-HHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 144 LDALMEPELGHK-LGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 144 l~~l~~~~~~~~-~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
=-+........+ .-..++..+.++|+|||.+.+.|-..+.
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y 138 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEY 138 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHH
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 211110000000 1568999999999999999999876443
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-07 Score=97.65 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHH--h------hcCCCCcEEEEeecCCC-CCCCCcccE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRR--N------VRDRSDMRWRVMDMTSM-QFMDETFDV 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~--~------~~~~~~i~~~~~D~~~l-~~~~~sFDv 137 (659)
.+.+||++|||.|..+..+.+.+ ..+|++||+++.+++.+++. . .-..++++++.+|+.+. .-..++||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 45799999999999998888874 46999999999999988641 1 11347899999999874 334578999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+.... +..... ...---..+++.+++.|+|||++++..-+
T Consensus 230 IIvDl~-DP~~~~-~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 230 IIIDFP-DPATEL-LSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred EEEcCC-Cccccc-hhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 997632 111100 00011357899999999999999887543
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-07 Score=98.91 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=82.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
-.+..|||+|||+|.++...|+.|..+|++||.|..+ +.+.+....++ ..++++.+.+.+..+|.++.|+|++.+.-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 3578999999999999999999999999999999866 55555544443 35899999999887778899999999887
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
+++.-. ..+..+|-.=-++|+|||.++
T Consensus 138 y~Ll~E----sMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYE----SMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHh----hhhhhhhhhhhhccCCCceEc
Confidence 776421 124455555568999999875
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.3e-07 Score=92.12 Aligned_cols=106 Identities=22% Similarity=0.238 Sum_probs=70.3
Q ss_pred CCCeEEEECCCcchHH----HHHHHc-----C-CCeEEEEcCCHHHHHHHHHHh-------------------hcCC---
Q 006149 68 PPPQILVPGCGNSRLS----EHLYDA-----G-FHGITNVDFSKVVISDMLRRN-------------------VRDR--- 115 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s----~~La~~-----g-~~~VtgvD~S~~~i~~~~~~~-------------------~~~~--- 115 (659)
+..+|+-.||++|.-. ..|.+. + .-+|+|+|+|+.+|+.|++-. ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5689999999999754 333341 2 138999999999999886420 0011
Q ss_pred -------CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 116 -------SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 116 -------~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
..|+|...|+.+.+.+.+.||+|+|.++|-++.... ..++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~-----~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET-----QQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH-----HHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH-----HHHHHHHHHHHcCCCCEEEEec
Confidence 368999999999444568999999999999986544 7899999999999999999865
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8e-07 Score=88.48 Aligned_cols=120 Identities=11% Similarity=0.091 Sum_probs=83.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC-
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM- 128 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l- 128 (659)
..+.+.+..++.. ..++.+|||+|||+|.++..++..+..+|+++|.++.+++.+++.....+ .+++++++|+.+.
T Consensus 38 d~v~e~l~~~l~~--~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 38 DRVRETLFNWLAP--VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL 115 (199)
T ss_pred HHHHHHHHHHHhh--hcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence 3444445555532 12467999999999999987666666799999999999997765544333 4789999998763
Q ss_pred CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHh--ccccCeEEEEEEcC
Q 006149 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTLA 180 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~r--vLkpGG~lvi~~~~ 180 (659)
+...++||+|++...+..- ....++..+.. +|+|+|.+++....
T Consensus 116 ~~~~~~fDlV~~DPPy~~g--------~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFRKG--------LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred hhcCCCceEEEECCCCCCC--------hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 2224579999987663221 13355555554 48999988877654
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.3e-07 Score=93.08 Aligned_cols=96 Identities=24% Similarity=0.356 Sum_probs=75.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
...++||||+|.|..+..|+.. +.+|++.+.|+.|.....++ + .+ +.|..+..-.+.+||+|.|-+.||-.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g--~~--vl~~~~w~~~~~~fDvIscLNvLDRc 164 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G--FT--VLDIDDWQQTDFKFDVISCLNVLDRC 164 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C--Ce--EEehhhhhccCCceEEEeehhhhhcc
Confidence 4578999999999999999765 67999999999776654332 2 22 23333333235689999999999998
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
..|. .+|+.+++.|+|+|++++..-
T Consensus 165 ~~P~-------~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 165 DRPL-------TLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred CCHH-------HHHHHHHHHhCCCCEEEEEEE
Confidence 7776 999999999999999988764
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.8e-07 Score=95.97 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=61.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC-CCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF-MDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~-~~~sFDvVi~~g 142 (659)
++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.+++.....+ .+++|+++|+.++.. ..+.||+|+...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP 248 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP 248 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC
Confidence 46899999999999999999987 499999999999998877665444 579999999987632 235799999763
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5e-07 Score=90.05 Aligned_cols=108 Identities=21% Similarity=0.276 Sum_probs=76.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCC------------------------------
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS------------------------------ 116 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~------------------------------ 116 (659)
.+..+|||||.+|.++..+++. |...|.|+||.+..|..|++....-..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4679999999999999999987 777899999999999988766432100
Q ss_pred ------C-------cEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 117 ------D-------MRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 117 ------~-------i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+ ..+...|+. .+....||+|+|...--++- ...+..++..+|..+.++|.|||+|++--
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIH-LNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIH-LNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEe-cccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 0 111111222 23456899999865433321 11233459999999999999999998753
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.2e-07 Score=89.49 Aligned_cols=116 Identities=21% Similarity=0.259 Sum_probs=92.2
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ 129 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~ 129 (659)
...+..++.. .++.+|||.|.|+|.++..|+.. | .++|+..|+-+...+.|++.....+ .++++...|+.+.-
T Consensus 83 ~~~I~~~~gi---~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 83 AGYIVARLGI---SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred HHHHHHHcCC---CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 3445566654 78999999999999999999964 3 4799999999999999887776533 44899999999976
Q ss_pred CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhh
Q 006149 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 185 (659)
Q Consensus 130 ~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~ 185 (659)
+++ .||.|+ ||- +++. ++++.+...|+|||.+++-...-+.+.
T Consensus 160 ~~~-~vDav~----LDm-p~PW-------~~le~~~~~Lkpgg~~~~y~P~veQv~ 202 (256)
T COG2519 160 DEE-DVDAVF----LDL-PDPW-------NVLEHVSDALKPGGVVVVYSPTVEQVE 202 (256)
T ss_pred ccc-ccCEEE----EcC-CChH-------HHHHHHHHHhCCCcEEEEEcCCHHHHH
Confidence 654 899998 342 4444 899999999999999999887644443
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.7e-07 Score=92.50 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=79.8
Q ss_pred CCeEEEECCCcchHHHH----HHHc-C----CCeEEEEcCCHHHHHHHHHHh------------------hc------C-
Q 006149 69 PPQILVPGCGNSRLSEH----LYDA-G----FHGITNVDFSKVVISDMLRRN------------------VR------D- 114 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~----La~~-g----~~~VtgvD~S~~~i~~~~~~~------------------~~------~- 114 (659)
..+|+..||+||.-... +.+. + .-+|+|+|+|+.+|+.|++-. .. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 47999999999975433 3332 1 137999999999999886531 00 0
Q ss_pred -------CCCcEEEEeecCCCCCC-CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 115 -------RSDMRWRVMDMTSMQFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 115 -------~~~i~~~~~D~~~l~~~-~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
...|+|.+.|+.+.+++ .+.||+|+|.+++.++.... ..++++.+.+.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~-----~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTT-----QERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHH-----HHHHHHHHHHHhCCCcEEEEeC
Confidence 13588999999886543 57899999999999886544 7799999999999999876654
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-06 Score=82.65 Aligned_cols=133 Identities=18% Similarity=0.241 Sum_probs=98.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
...-+||||||+|..+..|++. +...+.++|+++.+++..++.+..++-++..++.|+.+- +..++.|+++-+...-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 4678999999999999999887 456788999999999988887777777889999998773 3348889888554322
Q ss_pred --------------ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh-ccCceEEEee
Q 006149 146 --------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHA 202 (659)
Q Consensus 146 --------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~-~~~w~~~~~~ 202 (659)
++....++++...+++..+-.+|.|.|.|++.....+...+ +.... ..+|..++..
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~e-i~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKE-ILKILEKKGYGVRIAM 192 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHH-HHHHHhhcccceeEEE
Confidence 12222344455889999999999999999999987555433 33322 4467666543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.9e-07 Score=87.55 Aligned_cols=106 Identities=22% Similarity=0.211 Sum_probs=70.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCCC----CCCCcccE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSMQ----FMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~----~~i~~~~~D~~~l~----~~~~sFDv 137 (659)
..+.+|||+|||+|..+..++.. +..+|+..|..+ .++.++.....+. .++.+...|..+.. ....+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 46789999999999999999988 667999999999 8887765554433 57888888876521 34568999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+...+++.-. ..+.++.-+.++|+++|.+++....
T Consensus 123 IlasDv~Y~~~-------~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 123 ILASDVLYDEE-------LFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEES--S-GG-------GHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEecccchHH-------HHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 99999998632 2679999999999999986555543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=8e-07 Score=90.05 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=88.6
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCC-CcEEEEeecCCC--C-CCCCcccEEEeccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSM--Q-FMDETFDVILDKGG 143 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~-~i~~~~~D~~~l--~-~~~~sFDvVi~~g~ 143 (659)
...+||||||.|.+...+|.. +..+++|||+....+..+.++..+.+- |+.+++.|+..+ . +++++.|-|+....
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 369999999999999999987 457899999999999999998888776 999999999876 2 45569999986542
Q ss_pred ccccCCcccchH-HHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 144 LDALMEPELGHK-LGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 144 l~~l~~~~~~~~-~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
=-+...-..-.+ .-..+++.+.++|+|||.+.+.|-....
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 222111110001 1568999999999999999999865444
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.6e-07 Score=92.33 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=68.3
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (659)
.+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++.. .++++++++|+.+++++
T Consensus 29 ~i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 29 NILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA--EDNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc--cCceEEEEChhhcCCHH
Confidence 344455555543 5678999999999999999999875 99999999999998876553 26899999999998765
Q ss_pred CCcccEEEecccc
Q 006149 132 DETFDVILDKGGL 144 (659)
Q Consensus 132 ~~sFDvVi~~g~l 144 (659)
+-.+|.|+++-..
T Consensus 103 ~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ELQPLKVVANLPY 115 (272)
T ss_pred HcCcceEEEeCCc
Confidence 4335888876543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.3e-07 Score=106.93 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=81.9
Q ss_pred CCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC-----------------CCcEEEEeecCCCCC
Q 006149 69 PPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-----------------SDMRWRVMDMTSMQF 130 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~-----------------~~i~~~~~D~~~l~~ 130 (659)
+.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++....+. .+++++++|+.+..-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999998873 3689999999999998866554321 368999999987431
Q ss_pred C-CCcccEEEeccccc----------------------------ccCC---cccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 131 M-DETFDVILDKGGLD----------------------------ALME---PELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 131 ~-~~sFDvVi~~g~l~----------------------------~l~~---~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
. ..+||+|+++-..- ++.. .+++....++++.+..++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 23699999764321 1111 13344457899999999999999888755
Q ss_pred c
Q 006149 179 L 179 (659)
Q Consensus 179 ~ 179 (659)
-
T Consensus 279 G 279 (1082)
T PLN02672 279 G 279 (1082)
T ss_pred C
Confidence 4
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.3e-07 Score=102.57 Aligned_cols=110 Identities=19% Similarity=0.150 Sum_probs=80.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHH--hh------cCCCCcEEEEeecCCC-CCCCCcccE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRR--NV------RDRSDMRWRVMDMTSM-QFMDETFDV 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~--~~------~~~~~i~~~~~D~~~l-~~~~~sFDv 137 (659)
++.+|||+|||+|..+..+.+++. .+|+++|+++.+++.+++. .. -..++++++++|..+. ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 467999999999999999988754 6999999999999988762 11 1237899999998874 223478999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|++...-...... ..-.-+.+++.+++.|+|||++++...
T Consensus 377 Ii~D~~~~~~~~~--~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 377 IIVDLPDPSNPAL--GKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEeCCCCCCcch--hccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9986432211100 000134689999999999999988653
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.5e-07 Score=91.67 Aligned_cols=87 Identities=9% Similarity=0.162 Sum_probs=69.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (659)
.+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++... .++++++++|+.+++++
T Consensus 16 ~~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 16 RVVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCCch
Confidence 344445555543 4678999999999999999999864 899999999999988766533 46899999999998765
Q ss_pred CCcccEEEeccccc
Q 006149 132 DETFDVILDKGGLD 145 (659)
Q Consensus 132 ~~sFDvVi~~g~l~ 145 (659)
.||.|+++-.++
T Consensus 91 --~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 --EFNKVVSNLPYQ 102 (258)
T ss_pred --hceEEEEcCCcc
Confidence 489999877654
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-07 Score=96.75 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d 590 (659)
.+.|..++++ +++.. +++|+++||||+|.|...+...+|-.--+|+.||||..|++++++||.-- ++
T Consensus 104 e~~Yqemi~~-l~l~s--------~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~ 174 (337)
T KOG1562|consen 104 EFAYQEMIAH-LALCS--------HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEG 174 (337)
T ss_pred cccceeeeec-ccccc--------CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCC
Confidence 5778876654 67765 48999999999995555555444433459999999999999999999322 67
Q ss_pred CCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecC--chHHHHHHHhhcc
Q 006149 591 KSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS--FPEAAVQLGKLVK 638 (659)
Q Consensus 591 ~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~--~~~~~~~l~~~~~ 638 (659)
+|+.+. ..+|...|+++++++| +++|+++.+. +.-+...++.+.+
T Consensus 175 ~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aL---k~dgv~~~q~ec~wl~~~~i~e~r~ 251 (337)
T KOG1562|consen 175 KKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDAL---KGDGVVCTQGECMWLHLDYIKEGRS 251 (337)
T ss_pred CceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhh---CCCcEEEEecceehHHHHHHHHHHH
Confidence 777333 3489999999999999 9999887755 4444444444444
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-06 Score=96.29 Aligned_cols=100 Identities=9% Similarity=0.135 Sum_probs=73.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC----CCCCCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM----QFMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l----~~~~~sFDvVi~~ 141 (659)
.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++.+...+ .+++++++|+.+. ++.+++||+|+..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 456899999999999999999875 489999999999998877654443 5799999998763 2335679999954
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
..-..+ ...+++.+.+ ++|++.++++
T Consensus 370 PPr~G~---------~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 370 PPRKGC---------AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred cCCCCC---------CHHHHHHHHh-cCCCEEEEEc
Confidence 331111 1355665554 7888765554
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-07 Score=91.78 Aligned_cols=110 Identities=19% Similarity=0.245 Sum_probs=93.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
....++|||||-|.....|...+..+++-+|.|-.|++.++.. ....-.+.+.++|-+.++|.+++||+|++...+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 4679999999999999999999888999999999999876432 122234667889999999999999999999999998
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhh
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 185 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~ 185 (659)
.+.. ..+..++..|||+|.|+...++.+...
T Consensus 151 NdLP-------g~m~~ck~~lKPDg~FiasmlggdTLy 181 (325)
T KOG2940|consen 151 NDLP-------GSMIQCKLALKPDGLFIASMLGGDTLY 181 (325)
T ss_pred ccCc-------hHHHHHHHhcCCCccchhHHhccccHH
Confidence 7765 778999999999999999888766543
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-06 Score=87.98 Aligned_cols=122 Identities=21% Similarity=0.361 Sum_probs=88.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeec
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~ 125 (659)
|+.=...+..++.. .|+.+|||.|.|+|.++..|+.. +.++|+..|+.+...+.|++.....+ .++++.+.|+
T Consensus 25 YpkD~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 25 YPKDISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp -HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred eCchHHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 34444556677765 79999999999999999999975 34799999999999999988876655 4799999999
Q ss_pred CCCCCC---CCcccEEEecccccccCCcccchHHHHHHHHHHHhcc-ccCeEEEEEEcCCchhhc
Q 006149 126 TSMQFM---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL-KSGGKFVCLTLAESHVLG 186 (659)
Q Consensus 126 ~~l~~~---~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvL-kpGG~lvi~~~~~~~~~~ 186 (659)
.+..|+ +..||.|+ || ++++. .++..+.+.| ++||++++...+-+-+.+
T Consensus 102 ~~~g~~~~~~~~~Davf----LD-lp~Pw-------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~ 154 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVF----LD-LPDPW-------EAIPHAKRALKKPGGRICCFSPCIEQVQK 154 (247)
T ss_dssp GCG--STT-TTSEEEEE----EE-SSSGG-------GGHHHHHHHE-EEEEEEEEEESSHHHHHH
T ss_pred ecccccccccCcccEEE----Ee-CCCHH-------HHHHHHHHHHhcCCceEEEECCCHHHHHH
Confidence 765442 25799987 44 34444 7799999999 899999999876444433
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=85.77 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=88.1
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCc-EEEEeecCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDM-RWRVMDMTSM 128 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i-~~~~~D~~~l 128 (659)
.+.+.|.+++.. .+.+|||||||||..+.+++.. ..-...-.|..+..+....+.....+ +++ .-+..|+.+.
T Consensus 13 pIl~vL~~~l~~----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 13 PILEVLKQYLPD----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP 88 (204)
T ss_pred HHHHHHHHHhCc----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence 456677777754 3336999999999999999987 33466778999887665555443332 443 3567888776
Q ss_pred CCC--------CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 129 QFM--------DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 129 ~~~--------~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+.+ .++||.|++..++|.+.... .+.+++.+.++|++||.|++-.
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~-----~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHISPWSA-----VEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhcCHHH-----HHHHHHHHHHhCCCCCEEEEeC
Confidence 332 45899999999999876544 7899999999999999988765
|
The function of this family is unknown. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=96.89 Aligned_cols=101 Identities=21% Similarity=0.257 Sum_probs=73.5
Q ss_pred CCeEEEECCCcchHHHHHHHcC-----CCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCCCCcccEEEec
Q 006149 69 PPQILVPGCGNSRLSEHLYDAG-----FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDK 141 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g-----~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDvVi~~ 141 (659)
+..|||+|||+|-++...++.+ ..+|++|+-++.++..++++.... ..+|+++.+||++...+ .+.|+|++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 4689999999999997776654 469999999998887665552232 37899999999999765 589999987
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
..- .+.+.+ .....|....|.|||||+++
T Consensus 266 lLG-sfg~nE----l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNE----LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTT----SHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-Cccccc----cCHHHHHHHHhhcCCCCEEe
Confidence 543 344433 25577899999999999887
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-06 Score=86.86 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=78.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-----CCCCcccE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-----FMDETFDV 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-----~~~~sFDv 137 (659)
...+||||||++|..+.+++.. + .++|+.+|+++...+.+++.....+ .+++++.+|+.+. + -+.++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4679999999999999999976 2 3699999999999998877665544 5799999998763 1 11358999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|+.-+. ......++..+.++|+|||.+++-..
T Consensus 125 VFiDa~----------K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 125 VFIDAD----------KRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEEST----------GGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEccc----------ccchhhHHHHHhhhccCCeEEEEccc
Confidence 994321 11256899999999999999998764
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.6e-06 Score=83.48 Aligned_cols=117 Identities=22% Similarity=0.287 Sum_probs=81.9
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC--CC--------eEEEEcCCHHHHHHHHHHhhcCC--CCc
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FH--------GITNVDFSKVVISDMLRRNVRDR--SDM 118 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g--~~--------~VtgvD~S~~~i~~~~~~~~~~~--~~i 118 (659)
+.+...+..+... .++..|||.-||+|.+..+.+..+ .. +++|+|+++.+++.+++.....+ ..+
T Consensus 14 ~~lA~~ll~la~~---~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 14 PTLAAALLNLAGW---RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp HHHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred HHHHHHHHHHhCC---CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 3455566666654 577899999999999997776652 22 28899999999998877665444 358
Q ss_pred EEEEeecCCCCCCCCcccEEEecccccccCCc-ccchHHHHHHHHHHHhcccc
Q 006149 119 RWRVMDMTSMQFMDETFDVILDKGGLDALMEP-ELGHKLGNQYLSEVKRLLKS 170 (659)
Q Consensus 119 ~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~-~~~~~~~~~~l~ei~rvLkp 170 (659)
.+.+.|+.++++.++++|+|+++.....-... .+.......+++++.++|++
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 89999999999878999999988766543322 12234578899999999999
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.9e-06 Score=86.77 Aligned_cols=87 Identities=10% Similarity=0.082 Sum_probs=67.1
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (659)
.+...+.+.+.. .++.+|||+|||+|.++..|++.+. .|+++|+++.+++.++++... .++++++++|+.+++++
T Consensus 16 ~i~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 16 SVIQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCChh
Confidence 444445555543 5678999999999999999999875 799999999999988665532 57899999999998765
Q ss_pred CCccc---EEEeccccc
Q 006149 132 DETFD---VILDKGGLD 145 (659)
Q Consensus 132 ~~sFD---vVi~~g~l~ 145 (659)
.|| +|+++-.++
T Consensus 91 --~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 91 --DFPKQLKVVSNLPYN 105 (253)
T ss_pred --HcCCcceEEEcCChh
Confidence 566 777654433
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-06 Score=85.00 Aligned_cols=123 Identities=19% Similarity=0.315 Sum_probs=73.5
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 133 (659)
...+.+++... ++...|-|+|||.+.++..+. .+. .|+..|+-. .+-.+..+||.+.|++++
T Consensus 60 vd~iI~~l~~~--~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva--------------~n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 60 VDVIIEWLKKR--PKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA--------------PNPRVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHHHCTS---TTS-EEEES-TT-HHHHH---S----EEEEESS---------------SSTTEEES-TTS-S--TT
T ss_pred HHHHHHHHHhc--CCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC--------------CCCCEEEecCccCcCCCC
Confidence 45567777651 345799999999999997653 334 799999865 122467899999999999
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh-hcchhhhh-ccCceEEEee
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-LGLLFPKF-RFGWKMSVHA 202 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~-~~~l~~~~-~~~w~~~~~~ 202 (659)
+.|+++..-+|... . +..++.|+.|+|||||.+.|.+....-. .+.+.... ..|+.+....
T Consensus 122 svDv~VfcLSLMGT---n-----~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 122 SVDVAVFCLSLMGT---N-----WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp -EEEEEEES---SS---------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred ceeEEEEEhhhhCC---C-----cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc
Confidence 99999975554432 1 6799999999999999999999753211 12233333 3366655543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.9e-06 Score=87.43 Aligned_cols=102 Identities=9% Similarity=0.033 Sum_probs=79.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C----CCCccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F----MDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~----~~~sFD 136 (659)
.+..+|||+|||+|..+.+++.. + .+.|+++|.++...+.+++.....+ ++++++.+|+.+. + + ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 35689999999999999999874 2 3579999999999998877766554 5799999998763 1 1 136899
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+|+.-+. ......+++.+.++|+|||.+++-.
T Consensus 197 ~VFIDa~----------K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDAD----------KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECCC----------HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 9994321 1236789999999999999988754
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.2e-06 Score=84.34 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=86.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (659)
++...+.+.+.+.....+..|||+|||+|..+..++.. +...|++||.|+.+|.-+.+.+.... .++..+..+|+..
T Consensus 132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d 211 (328)
T KOG2904|consen 132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESD 211 (328)
T ss_pred HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccc
Confidence 33444445444322234568999999999999988776 55789999999999987765544332 4566665555442
Q ss_pred -----CCCCCcccEEEeccccc-------------------ccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 129 -----QFMDETFDVILDKGGLD-------------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 129 -----~~~~~sFDvVi~~g~l~-------------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+...+++|+++++...- ++....++...+..++.-+.|.|+|||.+.+...
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 34568999999875431 1111222334478888999999999999988765
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.1e-06 Score=84.96 Aligned_cols=116 Identities=19% Similarity=0.152 Sum_probs=87.2
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEE-eecC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRV-MDMT 126 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~-~D~~ 126 (659)
+.-..|..++.. .+..+|||||.+.|..+.+|+.. + .+++|.||+++...+.+++...+.+ +++..+. +|..
T Consensus 46 e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 46 ETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred hHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 334444444443 46789999999999999999986 3 4689999999999999988776654 4577777 4766
Q ss_pred CC-C-CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 127 SM-Q-FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 127 ~l-~-~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+. . ...++||+|+. |+- .....++|+.+.++|+|||.+++-...
T Consensus 123 ~~l~~~~~~~fDliFI----Dad------K~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 123 DVLSRLLDGSFDLVFI----DAD------KADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred HHHHhccCCCccEEEE----eCC------hhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 53 2 34689999993 332 122569999999999999999986643
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.7e-06 Score=78.33 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=93.3
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ- 129 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~--~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~- 129 (659)
++..+..-+.. ..+.-|||+|.|||.++..+..+|. .++++++.|+.+...+.++ .+.++++.+|+.++.
T Consensus 36 lA~~M~s~I~p---esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~----~p~~~ii~gda~~l~~ 108 (194)
T COG3963 36 LARKMASVIDP---ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL----YPGVNIINGDAFDLRT 108 (194)
T ss_pred HHHHHHhccCc---ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh----CCCccccccchhhHHH
Confidence 34444444443 5678999999999999999999864 6899999999999877554 477889999998874
Q ss_pred ----CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 130 ----FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 130 ----~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.+..||.|++.-.+-.++... .-++++.+...|.+||.++..+++
T Consensus 109 ~l~e~~gq~~D~viS~lPll~~P~~~-----~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPLLNFPMHR-----RIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHhhcCCCeeeeEEeccccccCcHHH-----HHHHHHHHHHhcCCCCeEEEEEec
Confidence 5677899999876666654333 678999999999999999999997
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.5e-06 Score=91.24 Aligned_cols=101 Identities=10% Similarity=0.101 Sum_probs=73.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC-CCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF-MDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~-~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.+++.+...+ .+++|+++|+.+... ...+||+|+....-.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45799999999999999999877 489999999999998876654443 479999999976421 124699998654422
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+ ...+++.+. .++|++.+++...
T Consensus 312 G~---------~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 GI---------GKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred CC---------cHHHHHHHH-hcCCCeEEEEEeC
Confidence 11 224455554 4788887777653
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.4e-06 Score=77.40 Aligned_cols=110 Identities=12% Similarity=0.175 Sum_probs=74.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcch-HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSR-LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~-~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (659)
.+...+.+.+.. ..+.+|||||||+|. .+..|++.|+ +|+++|+++.+++.+++. .+.+++.|+++.++
T Consensus 3 ~i~~~l~~~~~~---~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 3 TIAEFIAENYEK---GKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHHhccc---ccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh------CCeEEECcCCCCCH
Confidence 445556666544 346799999999996 8999998887 999999999988877543 37899999998653
Q ss_pred C-CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 131 M-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 131 ~-~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
. -+.+|+|.+. ..+.+ +...+-++.+-+ |.-+++..++.+.
T Consensus 73 ~~y~~a~liysi------rpp~e----l~~~~~~la~~~--~~~~~i~~l~~e~ 114 (134)
T PRK04148 73 EIYKNAKLIYSI------RPPRD----LQPFILELAKKI--NVPLIIKPLSGEE 114 (134)
T ss_pred HHHhcCCEEEEe------CCCHH----HHHHHHHHHHHc--CCCEEEEcCCCCC
Confidence 2 2467888753 22220 233333333332 5557777776443
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.4e-06 Score=88.50 Aligned_cols=102 Identities=20% Similarity=0.231 Sum_probs=78.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
-.+..|||+|||+|.++...+..|.++|++|+.|+ |.+.+++..+.+. .+|+++.+.+++..+| ++.|+|++...-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 35789999999999999999999999999999887 4445544443332 6899999999998876 789999987766
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
+.+-+. +..+.++ ..+++|+|.|.++
T Consensus 254 ~mL~NE----RMLEsYl-~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 254 YMLVNE----RMLESYL-HARKWLKPNGKMF 279 (517)
T ss_pred hhhhhH----HHHHHHH-HHHhhcCCCCccc
Confidence 555432 2244444 4569999999876
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.3e-06 Score=87.22 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=80.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc----C-CCeEEEEcCCHHHHHHHHHHhh-cCCCCcEE--EEeecCCC----CC--CCC
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVISDMLRRNV-RDRSDMRW--RVMDMTSM----QF--MDE 133 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~----g-~~~VtgvD~S~~~i~~~~~~~~-~~~~~i~~--~~~D~~~l----~~--~~~ 133 (659)
++..|+|+|||+|.-+..|.+. + ...++++|+|..+++.+.++.. ...+.+.+ +++|..+. +- ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 4668999999999987766553 1 2479999999999999988887 55576665 88988763 11 123
Q ss_pred cccEEEecc-cccccCCcccchHHHHHHHHHHHh-ccccCeEEEEEE
Q 006149 134 TFDVILDKG-GLDALMEPELGHKLGNQYLSEVKR-LLKSGGKFVCLT 178 (659)
Q Consensus 134 sFDvVi~~g-~l~~l~~~~~~~~~~~~~l~ei~r-vLkpGG~lvi~~ 178 (659)
...+++.-| ++.++...+ ...+|+++++ .|+|||.|++..
T Consensus 156 ~~r~~~flGSsiGNf~~~e-----a~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPE-----AAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CccEEEEeCccccCCCHHH-----HHHHHHHHHHhhCCCCCEEEEec
Confidence 467777665 788776555 7799999999 999999987744
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.7e-06 Score=82.39 Aligned_cols=105 Identities=10% Similarity=-0.087 Sum_probs=74.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C-CC-CcccEEEec
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F-MD-ETFDVILDK 141 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~-~~-~sFDvVi~~ 141 (659)
.+.++||++||+|.++..++.+|...|+++|.++.+++.+++.....+ .+++++++|+.+. . + .. ..||+|+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 468999999999999999999988899999999999987766554433 3688999999553 2 2 12 247888865
Q ss_pred ccccccCCcccchHHHHHHHHHHH--hccccCeEEEEEEcC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTLA 180 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~--rvLkpGG~lvi~~~~ 180 (659)
..+..- ....++..+. .+|+++|.+++-...
T Consensus 129 PPy~~~--------~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFNG--------ALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCCC--------cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 444321 1234444443 478888877766543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.1e-06 Score=85.90 Aligned_cols=133 Identities=16% Similarity=0.095 Sum_probs=95.2
Q ss_pred CCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CC
Q 006149 41 GDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SD 117 (659)
Q Consensus 41 ~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~ 117 (659)
+....+|-+..+.+..+.++. .+.+|||+-|=||.++...+..|..+|++||.|..+++.+++.+..++ .+
T Consensus 102 gqktGlFlDqR~nR~~v~~~~------~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~ 175 (286)
T PF10672_consen 102 GQKTGLFLDQRENRKWVRKYA------KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDR 175 (286)
T ss_dssp SSSTSS-GGGHHHHHHHHHHC------TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTC
T ss_pred CCcceEcHHHHhhHHHHHHHc------CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 355568888888888888875 368999999999999999888888899999999999999987766554 47
Q ss_pred cEEEEeecCCC-C-C-CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 118 MRWRVMDMTSM-Q-F-MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 118 i~~~~~D~~~l-~-~-~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++|+++|+.+. . . ..++||+|+.-..-.. .....-.....+++..+.++|+|||.+++++.+
T Consensus 176 ~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~-k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 176 HRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA-KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EEEEES-HHHHHHHHHHTT-EEEEEE--SSEE-SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred eEEEecCHHHHHHHHhcCCCCCEEEECCCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 89999999763 1 1 2468999995332221 111111234778899999999999999888876
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.24 E-value=7e-06 Score=88.07 Aligned_cols=109 Identities=19% Similarity=0.261 Sum_probs=79.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDvVi~ 140 (659)
.+.+||.+|+|.|..+.++.+. +..+|+.||+++.+++.+++.... ..++++++.+|.... ....++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999988886 457899999999999988766532 247899999998875 334578999996
Q ss_pred cccccccCCcccchHH-HHHHHH-HHHhccccCeEEEEEE
Q 006149 141 KGGLDALMEPELGHKL-GNQYLS-EVKRLLKSGGKFVCLT 178 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~-~~~~l~-ei~rvLkpGG~lvi~~ 178 (659)
-. .+...... .... -..+++ .+.+.|+|||++++..
T Consensus 183 D~-~dp~~~~~-~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DL-ADPVEGGP-CYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cC-CCccccCc-chhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 52 12110000 0001 236777 8999999999988754
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.6e-06 Score=88.03 Aligned_cols=88 Identities=17% Similarity=0.273 Sum_probs=68.7
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQF 130 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~ 130 (659)
....+.+.+.. .++.+|||||||+|.++..+++.+. +|+++|+++.+++.++++.... .++++++++|+.+.++
T Consensus 24 i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 24 VLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 34445555443 5778999999999999999998864 8999999999999988776543 3679999999988765
Q ss_pred CCCcccEEEecccccc
Q 006149 131 MDETFDVILDKGGLDA 146 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~ 146 (659)
..||+|+++-..+.
T Consensus 100 --~~~d~VvaNlPY~I 113 (294)
T PTZ00338 100 --PYFDVCVANVPYQI 113 (294)
T ss_pred --cccCEEEecCCccc
Confidence 36899987654443
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=88.09 Aligned_cols=130 Identities=20% Similarity=0.170 Sum_probs=97.2
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEE
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~~ 122 (659)
+|-+....+..+.+++ .+.+||++-|=||.++...+..|..+||+||.|..+++-+++...-++ .++.|++
T Consensus 201 fFlDqR~~R~~l~~~~------~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~ 274 (393)
T COG1092 201 FFLDQRDNRRALGELA------AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIV 274 (393)
T ss_pred eeHHhHHHHHHHhhhc------cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeeh
Confidence 5555556666666665 378999999999999999999998899999999999999877765554 4589999
Q ss_pred eecCCC-C---CCCCcccEEEeccc-ccccCCcc-cchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 123 MDMTSM-Q---FMDETFDVILDKGG-LDALMEPE-LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 123 ~D~~~l-~---~~~~sFDvVi~~g~-l~~l~~~~-~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+|+.+. . -...+||+|+.-.. +---.... ........++..+.++|+|||.+++++...
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 999875 1 23459999995322 21111111 112337889999999999999999999763
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.1e-06 Score=82.55 Aligned_cols=91 Identities=18% Similarity=0.190 Sum_probs=61.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCc-EEEEeecCCCCCC-----CCcccEEEec
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQFM-----DETFDVILDK 141 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i-~~~~~D~~~l~~~-----~~sFDvVi~~ 141 (659)
++.+|||+|||+|.++..+++.|...|+|+|+++.++....+ ..+++ .+...|+.....+ -..||+++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~----~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS 150 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR----QDERVKVLERTNIRYVTPADIFPDFATFDVSFIS 150 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh----cCCCeeEeecCCcccCCHhHcCCCceeeeEEEee
Confidence 567999999999999999999988899999999987764211 22333 2344455433211 1245555532
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+..++..+.+.|++ |.+++.-
T Consensus 151 ---------------~~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 151 ---------------LISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ---------------hHhHHHHHHHHhCc-CeEEEEc
Confidence 22568899999999 7665543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.7e-06 Score=87.22 Aligned_cols=134 Identities=24% Similarity=0.269 Sum_probs=96.9
Q ss_pred HhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHH
Q 006149 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (659)
Q Consensus 28 ~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~ 107 (659)
.+|.-.+|........-..+..|+.....+... ..+..++|+|||+|..+..- ....+++.|.+...+.-+
T Consensus 11 qeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~------~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~a 81 (293)
T KOG1331|consen 11 QEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQ------PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGA 81 (293)
T ss_pred HHHhHHHHHHhhhhccccccCccHHHHHHHhcc------CCcceeeecccCCcccCcCC---Ccceeeecchhhhhcccc
Confidence 456666776653221223455565554444332 24789999999999876421 223689999999777644
Q ss_pred HHHhhcCCCCc-EEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 108 LRRNVRDRSDM-RWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 108 ~~~~~~~~~~i-~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++ .+. ....+|+.++|+.+.+||.+++..+++|+.... ....+++++.|.|+|||...+..++
T Consensus 82 k~------~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~----RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 82 KR------SGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE----RRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred cc------CCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH----HHHHHHHHHHHHhcCCCceEEEEeh
Confidence 21 223 688899999999999999999999999997644 5889999999999999998776654
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-05 Score=82.64 Aligned_cols=123 Identities=22% Similarity=0.292 Sum_probs=85.0
Q ss_pred hhHHHHHHHHhhCC-CCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc---------------
Q 006149 50 WPQLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR--------------- 113 (659)
Q Consensus 50 ~~~l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~--------------- 113 (659)
+..+...|.++... .....+.+||..|||-|+++..++..|+ .+.|.|+|--|+-...-....
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 33444445555431 1123467999999999999999999999 999999999887532211110
Q ss_pred --------------------------CCCCcEEEEeecCCCCCCC---CcccEEEecccccccCCcccchHHHHHHHHHH
Q 006149 114 --------------------------DRSDMRWRVMDMTSMQFMD---ETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164 (659)
Q Consensus 114 --------------------------~~~~i~~~~~D~~~l~~~~---~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei 164 (659)
...++....+|+.+.-.++ ++||+|+....+|-.. ++-.++..|
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~-------Ni~~Yi~tI 188 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE-------NIIEYIETI 188 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH-------HHHHHHHHH
Confidence 0124566667777663333 7999999887776533 267999999
Q ss_pred HhccccCeEEEEEEcC
Q 006149 165 KRLLKSGGKFVCLTLA 180 (659)
Q Consensus 165 ~rvLkpGG~lvi~~~~ 180 (659)
.++|||||+.|=..+.
T Consensus 189 ~~lLkpgG~WIN~GPL 204 (270)
T PF07942_consen 189 EHLLKPGGYWINFGPL 204 (270)
T ss_pred HHHhccCCEEEecCCc
Confidence 9999999977655443
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.5e-05 Score=82.64 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=87.3
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHH----HHHHHcC------CCeEEEEcCCHHHHHHHHHH-----hh--
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS----EHLYDAG------FHGITNVDFSKVVISDMLRR-----NV-- 112 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s----~~La~~g------~~~VtgvD~S~~~i~~~~~~-----~~-- 112 (659)
+..+...+...+-.......-+|+-.||++|.-. ..|.+.+ .-+|+|+|++..+|+.|+.- ..
T Consensus 78 f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~ 157 (268)
T COG1352 78 FEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLR 157 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhc
Confidence 4445555554332211113679999999999654 3333332 24899999999999987631 11
Q ss_pred ------------cC--C---------CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccc
Q 006149 113 ------------RD--R---------SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 169 (659)
Q Consensus 113 ------------~~--~---------~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLk 169 (659)
+. + ..|.|...|+.+.++..+.||+|+|..++-++..+. ..+++..++..|+
T Consensus 158 ~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~-----q~~il~~f~~~L~ 232 (268)
T COG1352 158 GLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET-----QERILRRFADSLK 232 (268)
T ss_pred cCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH-----HHHHHHHHHHHhC
Confidence 00 0 247888888888764457899999999999986554 6799999999999
Q ss_pred cCeEEEEEE
Q 006149 170 SGGKFVCLT 178 (659)
Q Consensus 170 pGG~lvi~~ 178 (659)
|||++++-.
T Consensus 233 ~gG~LflG~ 241 (268)
T COG1352 233 PGGLLFLGH 241 (268)
T ss_pred CCCEEEEcc
Confidence 999999865
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=82.68 Aligned_cols=101 Identities=16% Similarity=0.038 Sum_probs=78.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C-----CCCccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F-----MDETFD 136 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~-----~~~sFD 136 (659)
...+|||||+++|..+..++.. + .++|+.+|.++...+.+++.....+ .+++++.+|+.+. + + ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 5679999999999999999875 2 3689999999999988877766554 6899999998764 2 1 136899
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+|+.- +- ......++..+.++|+|||.+++-.
T Consensus 159 ~iFiD----ad------K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 159 FIFVD----AD------KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEEec----CC------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 99943 21 2235688999999999999987743
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.5e-06 Score=76.51 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=79.4
Q ss_pred CccccccchhHHHHHHHHhhCC-CCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEE
Q 006149 42 DSFEWYAEWPQLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120 (659)
Q Consensus 42 ~~fewy~~~~~l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~ 120 (659)
-..|.|...+.+..-+...+.. ...-.+.+++|+|||.|.++....-.+...|+|+|+.+.+++.+.+.+.+---++.+
T Consensus 21 ~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidl 100 (185)
T KOG3420|consen 21 LLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDL 100 (185)
T ss_pred hhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhhe
Confidence 3456677777887767666654 122467899999999999996665556678999999999998775444333357899
Q ss_pred EEeecCCCCCCCCcccEEEeccccc
Q 006149 121 RVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 121 ~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
+++|+.++.+..+.||.++.+..+.
T Consensus 101 Lqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 101 LQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred eeeeccchhccCCeEeeEEecCCCC
Confidence 9999999988789999999776554
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.7e-05 Score=79.96 Aligned_cols=119 Identities=19% Similarity=0.303 Sum_probs=81.6
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcc
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (659)
.+.+.|.. ......|.|+|||.+.++. .-...|+..|+.. .+-.++.+||.+.|+++++.
T Consensus 170 ~ii~~ik~--r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a--------------~~~~V~~cDm~~vPl~d~sv 229 (325)
T KOG3045|consen 170 VIIRKIKR--RPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA--------------VNERVIACDMRNVPLEDESV 229 (325)
T ss_pred HHHHHHHh--CcCceEEEecccchhhhhh----ccccceeeeeeec--------------CCCceeeccccCCcCccCcc
Confidence 34455543 1346799999999998876 2234799999754 23457889999999999999
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh-hcchhhhh-ccCceEEEee
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-LGLLFPKF-RFGWKMSVHA 202 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~-~~~l~~~~-~~~w~~~~~~ 202 (659)
|+++..-+| +... +..++.+++|+|++||.+++.+...... ...+.+.+ ..|+.+....
T Consensus 230 DvaV~CLSL--Mgtn------~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 230 DVAVFCLSL--MGTN------LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred cEEEeeHhh--hccc------HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 999964333 3221 6689999999999999999998753211 11233333 3366555443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.4e-05 Score=90.76 Aligned_cols=117 Identities=11% Similarity=0.043 Sum_probs=86.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC--CCCCCcccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM--QFMDETFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l--~~~~~sFDvVi~~g~ 143 (659)
....+||||||+|.++..+|.. +..+++|+|++...+..+.++....+ .|+.+++.|+..+ -++++++|.|+..+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 5689999999999999999987 45789999999998888877754433 6888888887543 367889999986543
Q ss_pred ccccCCcccchHH-HHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 144 LDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 144 l~~l~~~~~~~~~-~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
=-|........+. -..+++.+.++|+|||.+.+.|-..+.+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~ 468 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYF 468 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHH
Confidence 2221111101111 5689999999999999999998765443
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.06 E-value=9e-06 Score=79.96 Aligned_cols=121 Identities=16% Similarity=0.168 Sum_probs=82.3
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM- 128 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l- 128 (659)
.+++.+..++... .-++.++||+-||+|.++.+.+.+|...|+.||.++.++..+++....-+ .++..+++|....
T Consensus 27 rvrealFniL~~~-~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l 105 (183)
T PF03602_consen 27 RVREALFNILQPR-NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL 105 (183)
T ss_dssp HHHHHHHHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH
T ss_pred HHHHHHHHHhccc-ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH
Confidence 4455555655531 02578999999999999999999999999999999999987766554433 3578889886543
Q ss_pred C---CCCCcccEEEecccccccCCcccchHH-HHHHHHHHH--hccccCeEEEEEEcCC
Q 006149 129 Q---FMDETFDVILDKGGLDALMEPELGHKL-GNQYLSEVK--RLLKSGGKFVCLTLAE 181 (659)
Q Consensus 129 ~---~~~~sFDvVi~~g~l~~l~~~~~~~~~-~~~~l~ei~--rvLkpGG~lvi~~~~~ 181 (659)
. ....+||+|+.-..... .. ...++..+. .+|+++|.+++-....
T Consensus 106 ~~~~~~~~~fDiIflDPPY~~--------~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 106 LKLAKKGEKFDIIFLDPPYAK--------GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHCTS-EEEEEE--STTS--------CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HhhcccCCCceEEEECCCccc--------chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 1 24689999996433332 11 357777776 8999999888877553
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.7e-05 Score=76.48 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=84.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc---CCCeEEEEcCCHHHHHHHHHHhhcC-----------CCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRD-----------RSD 117 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~---g~~~VtgvD~S~~~i~~~~~~~~~~-----------~~~ 117 (659)
.....+.++|.. ...|+.+.||+|.|+|.++..++.. ...+.+|||.-+..++..++..... ..+
T Consensus 67 ~mha~~le~L~~-~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 67 HMHATALEYLDD-HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHHH-hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 344455555541 1258999999999999999888754 2345699999999999776654332 246
Q ss_pred cEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 118 MRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 118 i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.++.+|.....-+..+||.|.+-... .+..+++...|++||++++--.
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa-------------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAA-------------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCc-------------cccHHHHHHhhccCCeEEEeec
Confidence 889999999887778899999975221 2567888999999999988654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.9e-06 Score=90.32 Aligned_cols=118 Identities=21% Similarity=0.265 Sum_probs=78.2
Q ss_pred HHHHHHHHhhCC-CCCCCCCeEEEECCCcchHHHHHHHcCCCeEE--EEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 006149 52 QLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGIT--NVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (659)
Q Consensus 52 ~l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~~s~~La~~g~~~Vt--gvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (659)
.+...|.+.+.. .....-..+||+|||.|.++..|.+++...++ .-|..+..++.+.++- -+ ..+-.+--..+
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG---vp-a~~~~~~s~rL 175 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG---VP-AMIGVLGSQRL 175 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC---cc-hhhhhhccccc
Confidence 444455555543 11123357999999999999999988652221 2255555555554432 11 11112234578
Q ss_pred CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
||++++||+|-|..++......+ + .+|-++.|+|+|||+|+.+..
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~-g-----~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPND-G-----FLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cCCccchhhhhcccccccchhcc-c-----ceeehhhhhhccCceEEecCC
Confidence 99999999999998887654433 2 689999999999999988764
|
; GO: 0008168 methyltransferase activity |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.2e-06 Score=79.80 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=75.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CC--CCcc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FM--DETF 135 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~--~~sF 135 (659)
.+.++||+||++|.++..+.+.+ ...|+|+|+.+. ...+.+.++++|+.+.. +. .+.|
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccccceeeeecccchhhHHHhhhhhccccccCc
Confidence 45899999999999999999987 469999999883 12255666677765431 11 2689
Q ss_pred cEEEecccccccCCcccc----hHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhcc
Q 006149 136 DVILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF 194 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~----~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~ 194 (659)
|+|++-++.........+ .......+.-+...|+|||.+++-.+..+... .+......
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~-~~~~~l~~ 154 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIE-ELIYLLKR 154 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSH-HHHHHHHH
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHH-HHHHHHHh
Confidence 999998865544432211 12356666677788999999999888765553 44444433
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.4e-05 Score=67.86 Aligned_cols=101 Identities=29% Similarity=0.391 Sum_probs=73.0
Q ss_pred EEEECCCcchHHHHHHHcCC--CeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCC--CCCCC-CcccEEEecccc
Q 006149 72 ILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTS--MQFMD-ETFDVILDKGGL 144 (659)
Q Consensus 72 ILDiGCG~G~~s~~La~~g~--~~VtgvD~S~~~i~~~~~~~~~~~~~--i~~~~~D~~~--l~~~~-~sFDvVi~~g~l 144 (659)
++|+|||+|..+ .+..... ..++++|+++.++......... ... +.+...|... +++.. ..||++......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 3333322 3799999999999874433322 222 6888888887 67776 489999444444
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
++.. ....+.++.+.|+|+|.+++......
T Consensus 130 ~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLP--------PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCC--------HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4332 24889999999999999999887643
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0002 Score=76.29 Aligned_cols=182 Identities=14% Similarity=0.190 Sum_probs=103.7
Q ss_pred CCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--------CCCeEEEEcCCHHHHHHHHHHhh
Q 006149 41 GDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------GFHGITNVDFSKVVISDMLRRNV 112 (659)
Q Consensus 41 ~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--------g~~~VtgvD~S~~~i~~~~~~~~ 112 (659)
.+...-|.....+...+.+++.. .++.+|||.+||+|.+...+.+. ...+++|+|+++.++..++....
T Consensus 22 ~k~~G~~~TP~~i~~l~~~~~~~---~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~ 98 (311)
T PF02384_consen 22 RKKLGQFYTPREIVDLMVKLLNP---KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL 98 (311)
T ss_dssp TTSCGGC---HHHHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred ccccceeehHHHHHHHHHhhhhc---cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence 34445556667888888888865 56778999999999998777662 34589999999998876544332
Q ss_pred cCC---CCcEEEEeecCCCCCC--CCcccEEEeccccccc--CCccc------------chHHHHHHHHHHHhccccCeE
Q 006149 113 RDR---SDMRWRVMDMTSMQFM--DETFDVILDKGGLDAL--MEPEL------------GHKLGNQYLSEVKRLLKSGGK 173 (659)
Q Consensus 113 ~~~---~~i~~~~~D~~~l~~~--~~sFDvVi~~g~l~~l--~~~~~------------~~~~~~~~l~ei~rvLkpGG~ 173 (659)
-.+ ......+.|....+.. ...||+|+++..+... ..... ....--.++..+.+.|++||+
T Consensus 99 l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~ 178 (311)
T PF02384_consen 99 LHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGR 178 (311)
T ss_dssp HTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEE
T ss_pred hhccccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccc
Confidence 222 2346888887765433 4789999987665543 11110 001123478999999999999
Q ss_pred EEEEEcCCc----hhhcchhhhh-ccCceEEEeeeCCCCCCCCCCccEEEEEEecCC
Q 006149 174 FVCLTLAES----HVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (659)
Q Consensus 174 lvi~~~~~~----~~~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (659)
++++....- .....+-+.+ ..++-..+-.++..-=........+++.+|...
T Consensus 179 ~~~Ilp~~~L~~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 179 AAIILPNGFLFSSSSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp EEEEEEHHHHHGSTHHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred eeEEecchhhhccchHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeeccc
Confidence 887775311 1111122222 223444455555321122455668888887664
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.5e-05 Score=83.60 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=84.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CCCCcccEEE---
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FMDETFDVIL--- 139 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~~~sFDvVi--- 139 (659)
.++.+|||++||.|.-|..++.. +.+.|+++|+++.-+..+.+...+.+ .++.+.+.|...+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 67899999999999999999886 33589999999999988877765544 56788888887753 2246799999
Q ss_pred -ecccccccCCcccc-----------hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 140 -DKGGLDALMEPELG-----------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 140 -~~g~l~~l~~~~~~-----------~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|.|.--.-.+++.- ...-.++|..+.++|||||+++-+|.+
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 33321111111100 012578999999999999999998876
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.2e-05 Score=86.81 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=89.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++..++|+|||-|..+...+..+...++|+|.++.-+.+......... ....++..|+.++||++..||.+.+..+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 4567999999999999999988876799999999977766554443322 34556899999999999999999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.|..+.. ..+++++|+++|||++++-++.
T Consensus 189 ~~~~~~~-------~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 189 CHAPDLE-------KVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred ccCCcHH-------HHHHHHhcccCCCceEEeHHHH
Confidence 9988765 9999999999999999987754
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.8e-05 Score=83.22 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=74.5
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
+.+|||++||+|..+..++.. +...|+++|+++.+++.+++....++ .++.+.++|+..+-...+.||+|+....
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 468999999999999999875 55689999999999998866554333 4577899998764211467999986431
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
..+ ..++..+.+.+++||.+++.
T Consensus 135 -Gs~-------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSP-------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCc-------HHHHHHHHHHhcCCCEEEEE
Confidence 222 26788878889999999888
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.6e-05 Score=81.80 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=92.1
Q ss_pred cCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHH
Q 006149 23 GDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (659)
Q Consensus 23 ~~f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~ 102 (659)
..|....|-+.+|.... +...+ .+-.......+.+.+.. ....+.++||||||+-.....-+..-+.+|+..|+++.
T Consensus 14 ~~FdP~~Yl~~yY~~~~-~~~~~-~~~~~~~L~~l~~~f~~-g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~ 90 (256)
T PF01234_consen 14 EEFDPRAYLDTYYSFPS-GDDAE-DEILLFFLKNLHETFSS-GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQ 90 (256)
T ss_dssp HHB-HHHHHHHHHSTSS-S-CHH-HHHHHHHHHHHHHHHHT-SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHH
T ss_pred hcCCHHHHHHHhcCCCc-cCccc-chhHHHHHHHHHHHhCc-cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHh
Confidence 45777778888886541 11110 00011122233333332 22346799999999966544444445678999999999
Q ss_pred HHHHHHHHhhcCC-----------------------------CCcE-EEEeecCCCC-CCC-----CcccEEEecccccc
Q 006149 103 VISDMLRRNVRDR-----------------------------SDMR-WRVMDMTSMQ-FMD-----ETFDVILDKGGLDA 146 (659)
Q Consensus 103 ~i~~~~~~~~~~~-----------------------------~~i~-~~~~D~~~l~-~~~-----~sFDvVi~~g~l~~ 146 (659)
-++.+.+.....+ ..|+ ++..|+++.+ +.. ..||+|++..+|..
T Consensus 91 N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~ 170 (256)
T PF01234_consen 91 NREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLES 170 (256)
T ss_dssp HHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHH
T ss_pred hHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHH
Confidence 8887655433210 1133 6778988863 332 35999999999998
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.....+ ...++++++.++|||||.|+++...
T Consensus 171 a~~d~~---~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 171 ACKDLD---EYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp H-SSHH---HHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred HcCCHH---HHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 765432 3889999999999999999998754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.9e-06 Score=81.68 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=81.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCC--CCCCCcccEEEe
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSM--QFMDETFDVILD 140 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~----~~i~~~~~D~~~l--~~~~~sFDvVi~ 140 (659)
+.+.+|||.+.|-|..+...+++|...|+.++.++.+++-+ ..+.-.. ..++.+.+|+.+. .|+|++||+|+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa-~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELA-KLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEee-ccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 46899999999999999999999988999999999999744 2221111 3589999999886 688999999994
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
...-..+.. .--.+.+..+++|+|||||+++--+-
T Consensus 212 DPPRfS~Ag----eLYseefY~El~RiLkrgGrlFHYvG 246 (287)
T COG2521 212 DPPRFSLAG----ELYSEEFYRELYRILKRGGRLFHYVG 246 (287)
T ss_pred CCCccchhh----hHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence 222111111 11156899999999999999976553
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.91 E-value=5e-05 Score=75.61 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=72.7
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (659)
+..+.+.+ .++..|||+.||-|.++..+++. ....|+++|+++.+++.+++....++ ..+..+++|..++..
T Consensus 92 r~Ri~~~v-----~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~ 166 (200)
T PF02475_consen 92 RRRIANLV-----KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP 166 (200)
T ss_dssp HHHHHTC-------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---
T ss_pred HHHHHhcC-----CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC
Confidence 33455554 36899999999999999999984 33589999999999998876655444 568899999998854
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
.+.||-|++...-.. ..+|..+.+++++||.+-
T Consensus 167 -~~~~drvim~lp~~~-----------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 167 -EGKFDRVIMNLPESS-----------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -TT-EEEEEE--TSSG-----------GGGHHHHHHHEEEEEEEE
T ss_pred -ccccCEEEECChHHH-----------HHHHHHHHHHhcCCcEEE
Confidence 689999997543222 267888999999998763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.5e-05 Score=68.59 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=60.4
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc-CCCCCCCeeEE-------------------ec----
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVF-------------------NH---- 598 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F-gl~~d~rl~vf-------------------~~---- 598 (659)
.+||-||.|.|.++..+.+.+|..++++||+||.+++.|++.+ .....+|+.++ ..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 82 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTLH 82 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSGG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCccc
Confidence 6899999999999999999889999999999999999999998 22223444221 11
Q ss_pred -ccc----hhHHHHHHHhhccCCCCcEEEec
Q 006149 599 -LFC----LQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 599 -l~~----~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
++. ..+++.+.+.| +|+|.++.+
T Consensus 83 ~~~~~~~~~~~l~~~~~~L---~pgG~lvi~ 110 (112)
T PF12847_consen 83 FLLPLDERRRVLERIRRLL---KPGGRLVIN 110 (112)
T ss_dssp GCCHHHHHHHHHHHHHHHE---EEEEEEEEE
T ss_pred cccchhHHHHHHHHHHHhc---CCCcEEEEE
Confidence 111 23477788888 888888765
|
... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=74.48 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=86.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C--CCeEEEEcCCHHHHHHHHHHhhcCC-CCc-EEEEeecCCCC-CC--CCcccEE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-G--FHGITNVDFSKVVISDMLRRNVRDR-SDM-RWRVMDMTSMQ-FM--DETFDVI 138 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g--~~~VtgvD~S~~~i~~~~~~~~~~~-~~i-~~~~~D~~~l~-~~--~~sFDvV 138 (659)
..+-+||||.||.|+........ + ..+|...|+|+..++..++...+.+ .++ +|.++|+.+.. +. +-..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35679999999999987666554 3 3689999999999998887776655 455 99999998852 21 3457999
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+..|.++.+.+.+ .+...+.-+.+.+.|||++|...
T Consensus 214 iVsGL~ElF~Dn~----lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELFPDND----LVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEecchhhCCcHH----HHHHHHHHHHHHhCCCcEEEEcC
Confidence 9999999887654 36778999999999999998765
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=75.89 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=80.9
Q ss_pred CeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC-----CCcEEEEeecCCC-CCCCCcccEEEecc
Q 006149 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-----SDMRWRVMDMTSM-QFMDETFDVILDKG 142 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~-----~~i~~~~~D~~~l-~~~~~sFDvVi~~g 142 (659)
.+||.||-|.|..+..+.++. ..+++.||+.+.+++-+++.+.... ++++.+..|..+. .-...+||+|+.-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 599999999999999999985 5799999999999998877654432 7899999998876 21224899999643
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+=. ....+ .---..+++.+++.|+++|+++.-+
T Consensus 158 tdp-~gp~~--~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 158 TDP-VGPAE--ALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCC-CCccc--ccCCHHHHHHHHHhcCCCcEEEEec
Confidence 322 11100 0003589999999999999999984
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.9e-05 Score=77.25 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=77.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCC-cccEEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDE-TFDVIL 139 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~-sFDvVi 139 (659)
.+.+||-||-|.|..+..+.+.. ..+|+.||+++.+++.+++-... ..++++++.+|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57899999999999999998885 57999999999999988665432 247899999999775 22234 899999
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.-..- ....... ---..+++.+++.|+|||++++..
T Consensus 156 ~D~~d-p~~~~~~--l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTD-PDGPAPN--LFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSS-TTSCGGG--GSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCC-CCCCccc--ccCHHHHHHHHhhcCCCcEEEEEc
Confidence 63322 1111100 013589999999999999999876
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.8e-05 Score=79.88 Aligned_cols=102 Identities=18% Similarity=0.158 Sum_probs=86.0
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccC
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~ 148 (659)
-...+|+|.|.|+.+..+.. -|.+|-++++....+.++..... +.|..+-+|+..- .|. -|+||.+++|+++.
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc---CCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 37899999999999999988 56689999999988876654442 5589999999886 443 46999999999998
Q ss_pred CcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 149 ~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+.+ ..++|++++..|+|||.+++.+..-+
T Consensus 251 Ded-----cvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 251 DED-----CVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred hHH-----HHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 876 78999999999999999999997433
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00018 Score=74.49 Aligned_cols=97 Identities=12% Similarity=0.206 Sum_probs=73.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCCCCCCCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQFMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l~~~~~sFDvVi~~ 141 (659)
+.+.+||-+|.|.|..++++.++.. +|+.||+.+.+++.+++-... ..|+++++.. +.+ -..++||+|+.-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 4568999999999999999999974 999999999999988763322 3367777652 211 123689999965
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+ . + ..+.+.+++.|+|||.++.-.-
T Consensus 147 s~----~-~-------~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 147 QE----P-D-------IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CC----C-C-------hHHHHHHHHhcCCCcEEEECCC
Confidence 43 1 1 2678999999999999998653
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.5e-05 Score=76.43 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=68.9
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC-
Q 006149 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE- 133 (659)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~- 133 (659)
..+.+.+.. .+++.|||||+|.|.+|..|++.+. .|+++++++.++..++++.. ...+++.+.+|+...+++.-
T Consensus 20 ~kIv~~a~~---~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 20 DKIVEAANI---SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHhcCC---CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcchhhc
Confidence 334444443 5689999999999999999999987 79999999999998877653 56789999999999988743
Q ss_pred cccEEEeccccc
Q 006149 134 TFDVILDKGGLD 145 (659)
Q Consensus 134 sFDvVi~~g~l~ 145 (659)
.++.|+++--.+
T Consensus 95 ~~~~vVaNlPY~ 106 (259)
T COG0030 95 QPYKVVANLPYN 106 (259)
T ss_pred CCCEEEEcCCCc
Confidence 678888764433
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0001 Score=78.52 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=59.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC-C--CCcEEEE-eecCCCC----CCCCcccEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-R--SDMRWRV-MDMTSMQ----FMDETFDVI 138 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~-~--~~i~~~~-~D~~~l~----~~~~sFDvV 138 (659)
...++||||||+|.+...|+.. ...+++|+|+++.+++.+++....+ . .++.+.+ .|..++. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4679999999999888777665 2248999999999999887766554 2 3566653 3433321 246789999
Q ss_pred EecccccccC
Q 006149 139 LDKGGLDALM 148 (659)
Q Consensus 139 i~~g~l~~l~ 148 (659)
+|+.-++.-.
T Consensus 194 vcNPPf~~s~ 203 (321)
T PRK11727 194 LCNPPFHASA 203 (321)
T ss_pred EeCCCCcCcc
Confidence 9998887643
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.7e-05 Score=82.90 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=48.7
Q ss_pred CeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 006149 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (659)
.+|||++||+|.++..+++. ..+|++||+++.+++.+++.....+ .+++++++|+.+.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 266 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 57999999999999988776 4589999999999998876654443 4799999998763
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00037 Score=69.16 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=84.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (659)
.++.+|+|+||-.|.++..+++. +. ..|+++|+.+ | ...+++.++++|+++.+ +....+|
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-----~-----~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-----M-----KPIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-----c-----ccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 46899999999999999999887 32 3599999988 3 23467999999999864 3445679
Q ss_pred EEEecccccccCCc----ccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhcc-CceEEE
Q 006149 137 VILDKGGLDALMEP----ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF-GWKMSV 200 (659)
Q Consensus 137 vVi~~g~l~~l~~~----~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~-~w~~~~ 200 (659)
+|++-++-...... .....+...++.-+..+|+|||.|++-.+-.... +.++..++. +..+..
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~-~~~l~~~~~~F~~v~~ 181 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF-EDLLKALRRLFRKVKI 181 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH-HHHHHHHHHhhceeEE
Confidence 99965443111111 0111236778888889999999999988764433 334444443 333433
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.2e-05 Score=80.76 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=48.9
Q ss_pred CeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 006149 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (659)
.+|||+|||+|.++..|++.. ..|++||+++.+++.+++.....+ .+++++++|+.+.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 479999999999999888764 599999999999998877665444 4799999998763
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=74.08 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=67.7
Q ss_pred hhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccE
Q 006149 60 LIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDV 137 (659)
Q Consensus 60 ~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDv 137 (659)
++.....++.+.|||+|.|||.+|..|.+.|. +|+++++.+.|+....++..... ...+++.+|+...++| .||+
T Consensus 50 I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~ 126 (315)
T KOG0820|consen 50 IVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDG 126 (315)
T ss_pred HHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccce
Confidence 33333347899999999999999999999986 99999999999999988875443 5689999999998755 6999
Q ss_pred EEeccccc
Q 006149 138 ILDKGGLD 145 (659)
Q Consensus 138 Vi~~g~l~ 145 (659)
++++-...
T Consensus 127 cVsNlPyq 134 (315)
T KOG0820|consen 127 CVSNLPYQ 134 (315)
T ss_pred eeccCCcc
Confidence 99764433
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.8e-05 Score=78.13 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=67.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (659)
+.+...+.+.+.. .++..+||.+||+|..+..+++.. ...|+|+|.++.+++.++++... ..+++++++|+.++
T Consensus 5 pVll~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l 80 (296)
T PRK00050 5 PVLLDEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNL 80 (296)
T ss_pred cccHHHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHH
Confidence 3444455566653 577899999999999999999873 36899999999999999877755 56899999999886
Q ss_pred C--CCCC--cccEEEec
Q 006149 129 Q--FMDE--TFDVILDK 141 (659)
Q Consensus 129 ~--~~~~--sFDvVi~~ 141 (659)
. .+.+ ++|.|+..
T Consensus 81 ~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 81 KEVLAEGLGKVDGILLD 97 (296)
T ss_pred HHHHHcCCCccCEEEEC
Confidence 3 1222 78988854
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0008 Score=65.85 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=86.3
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM- 128 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l- 128 (659)
..++.+..++... --.+.++||+-+|+|.++.+.+.+|...++.||.+..++..+++....-+ .++.++.+|+...
T Consensus 28 rVREalFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 28 RVREALFNILAPD-EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred HHHHHHHHhcccc-ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence 3444555555420 02578999999999999999999999999999999999988876655544 6788889998843
Q ss_pred -CCCC-CcccEEEecccccccCCcccchHHHHHHHHH--HHhccccCeEEEEEEcCC
Q 006149 129 -QFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSE--VKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 129 -~~~~-~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~e--i~rvLkpGG~lvi~~~~~ 181 (659)
.... +.||+|+.-..+..-.- .....+.. -..+|+|+|.++|-...+
T Consensus 107 ~~~~~~~~FDlVflDPPy~~~l~------~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYAKGLL------DKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HhcCCCCcccEEEeCCCCccchh------hHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2222 24999996554441100 01233333 558899999999987654
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00013 Score=71.67 Aligned_cols=97 Identities=19% Similarity=0.099 Sum_probs=74.9
Q ss_pred eEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCCCCCCCcccEEEecccccccC
Q 006149 71 QILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~-~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~ 148 (659)
+++|+|+|.|.=+..|+-. +..+++.+|....=+..++.....- -.++++++..+.+ +....+||+|++..+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~--- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVAP--- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhcC---
Confidence 8999999999988888765 4468999999987666555444332 3679999999998 44568999999876543
Q ss_pred CcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 149 ~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
...++.-+.++|++||++++.--
T Consensus 127 --------l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 127 --------LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp --------HHHHHHHHGGGEEEEEEEEEEES
T ss_pred --------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 34889999999999999998864
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00048 Score=74.21 Aligned_cols=124 Identities=20% Similarity=0.216 Sum_probs=89.6
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC---------------------------------C-------
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------H------- 92 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~---------------------------------~------- 92 (659)
+...++.+... .++..++|.-||+|.+..+.|-.+. +
T Consensus 179 LAaAil~lagw---~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 179 LAAAILLLAGW---KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred HHHHHHHHcCC---CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 33344444444 4557999999999999988776541 1
Q ss_pred eEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccccc-cCCcccchHHHHHHHHHHHhccc
Q 006149 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDA-LMEPELGHKLGNQYLSEVKRLLK 169 (659)
Q Consensus 93 ~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~-l~~~~~~~~~~~~~l~ei~rvLk 169 (659)
.++|+|+++.+|+.|+..+...+ ..|+|.++|+.+++-+-+.+|+|+++....- +.+......+...+.+.+++.++
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 37799999999998877665555 5699999999998644478999999865542 22222122346677778888888
Q ss_pred cCeEEEEEEc
Q 006149 170 SGGKFVCLTL 179 (659)
Q Consensus 170 pGG~lvi~~~ 179 (659)
.-+++++++.
T Consensus 336 ~ws~~v~tt~ 345 (381)
T COG0116 336 GWSRYVFTTS 345 (381)
T ss_pred CCceEEEEcc
Confidence 8889998885
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00042 Score=72.59 Aligned_cols=126 Identities=13% Similarity=0.025 Sum_probs=80.0
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEE--EEeec
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRW--RVMDM 125 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~--~~~D~ 125 (659)
|..+...|.++-...+...+.+|||+|||+|..+..+.+. ...+++++|.|+.|++.++... ...+.... ...+.
T Consensus 15 YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~-~~~~~~~~~~~~~~~ 93 (274)
T PF09243_consen 15 YAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL-RAGPNNRNAEWRRVL 93 (274)
T ss_pred HHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH-hcccccccchhhhhh
Confidence 4445555555543322245679999999999876555443 3568999999999998665544 33322111 11111
Q ss_pred CCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 126 ~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
.....+....|+|++.++|..+.+.. +..+++.+.+.+.+ .+++++.+.+.
T Consensus 94 ~~~~~~~~~~DLvi~s~~L~EL~~~~-----r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 94 YRDFLPFPPDDLVIASYVLNELPSAA-----RAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hcccccCCCCcEEEEehhhhcCCchH-----HHHHHHHHHHhccC--cEEEEcCCChH
Confidence 11111122349999999999987622 67888888777766 99999987554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00065 Score=70.71 Aligned_cols=105 Identities=14% Similarity=0.231 Sum_probs=77.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (659)
+.++..+.+.+.. .++..|||+|+|.|.+|..|++.+ .+++++|+++.+++.++++.. ..++++++.+|+.+++.
T Consensus 16 ~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 16 PNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSCG
T ss_pred HHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-hcccceeeecchhcccc
Confidence 4566667777764 478999999999999999999998 699999999999988876654 56889999999999876
Q ss_pred CC---CcccEEEecccccccCCcccchHHHHHHHHHHHhcccc
Q 006149 131 MD---ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 170 (659)
Q Consensus 131 ~~---~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkp 170 (659)
.. .....|+++-.. ++ -..++..+...-+.
T Consensus 91 ~~~~~~~~~~vv~NlPy-~i---------s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 91 YDLLKNQPLLVVGNLPY-NI---------SSPILRKLLELYRF 123 (262)
T ss_dssp GGHCSSSEEEEEEEETG-TG---------HHHHHHHHHHHGGG
T ss_pred HHhhcCCceEEEEEecc-cc---------hHHHHHHHhhcccc
Confidence 54 344566655433 22 23566666663333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00051 Score=73.50 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=92.7
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (659)
-+..+.+... ++.+|||+-||-|.++..++..|...|+++|+++.+++.+++....++ ..+..+++|......
T Consensus 178 ER~Rva~~v~-----~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 178 ERARVAELVK-----EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP 252 (341)
T ss_pred HHHHHHhhhc-----CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh
Confidence 3445556553 589999999999999999999987669999999999998877665554 348899999999875
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
.-+.||-|++...-. ...++....+.+++||.+-+-+..++..
T Consensus 253 ~~~~aDrIim~~p~~-----------a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 253 ELGVADRIIMGLPKS-----------AHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred ccccCCEEEeCCCCc-----------chhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 558899999754433 2378889999999999999888875543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.001 Score=66.53 Aligned_cols=125 Identities=20% Similarity=0.305 Sum_probs=86.6
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~ 123 (659)
|......+...+..-+...+..++.+||-+|..+|....++++. | .+.|++|++|+.....+.. .++.++|+-.+..
T Consensus 51 W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~-la~~R~NIiPIl~ 129 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLN-LAKKRPNIIPILE 129 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH-HHHHSTTEEEEES
T ss_pred cCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHH-HhccCCceeeeec
Confidence 55555566666666666555678999999999999999999987 5 4689999999988877754 4467789999999
Q ss_pred ecCCCC---CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 124 DMTSMQ---FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 124 D~~~l~---~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+.... .--+..|+|++.= ..+ ...+-+..++...||+||.+++..-+
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DV-----aQp----~Qa~I~~~Na~~fLk~gG~~~i~iKa 180 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDV-----AQP----DQARIAALNARHFLKPGGHLIISIKA 180 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE------SST----THHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cCCChHHhhcccccccEEEecC-----CCh----HHHHHHHHHHHhhccCCcEEEEEEec
Confidence 998742 1235899998531 111 23678888999999999999987643
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00026 Score=77.18 Aligned_cols=99 Identities=9% Similarity=0.092 Sum_probs=77.2
Q ss_pred CCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CCCCcccEEEecccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FMDETFDVILDKGGL 144 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~~~sFDvVi~~g~l 144 (659)
+.+|||+.||+|..+..++.. |...|+++|+++.+++.+++...... .++.+.++|+..+- .....||+|....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 358999999999999999887 66799999999999998876654443 35889999988752 1235799998533
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
...+. .++..+.+.+++||.+++..
T Consensus 123 --fGs~~-------~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 --FGTPA-------PFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred --CCCcH-------HHHHHHHHhcccCCEEEEEe
Confidence 22222 78999999999999988874
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00066 Score=70.68 Aligned_cols=132 Identities=18% Similarity=0.305 Sum_probs=77.4
Q ss_pred CccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHH-HHHc-CC-CeEEEEcCCHHHHHHHHHHhhcC---C
Q 006149 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEH-LYDA-GF-HGITNVDFSKVVISDMLRRNVRD---R 115 (659)
Q Consensus 42 ~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~-La~~-g~-~~VtgvD~S~~~i~~~~~~~~~~---~ 115 (659)
..|.+|..|..+...=...+.......+.+|+=||||.=-+|.. |++. +. ..|+++|+++.+++.+++-.... .
T Consensus 94 ~~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~ 173 (276)
T PF03059_consen 94 ESFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS 173 (276)
T ss_dssp HTSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-
T ss_pred hcCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc
Confidence 34667777777766444445431112345999999998777644 4443 32 47999999999999876654422 3
Q ss_pred CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 116 SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 116 ~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+++|+++|..+.+.+-..||+|+.......-..+ -.+++.++.+.++||..+++-+.
T Consensus 174 ~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~------K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 174 KRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEP------KEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp SSEEEEES-GGGG-GG----SEEEE-TT-S----S------HHHHHHHHHHHS-TTSEEEEEE-
T ss_pred CCeEEEecchhccccccccCCEEEEhhhcccccch------HHHHHHHHHhhCCCCcEEEEecc
Confidence 67999999998876555789999965544421112 46999999999999999988754
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00097 Score=66.95 Aligned_cols=100 Identities=17% Similarity=0.071 Sum_probs=73.8
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
+.+++|||.|.|.=+..|+-. ...+||-+|....=+...+....+-+ ++++++++-++++.-....||+|.+..+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 589999999999998888733 33469999988766665544443333 679999999999753211199999875443
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+..++.-+..++++||.++..-.
T Consensus 147 ----------L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 147 ----------LNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred ----------hHHHHHHHHHhcccCCcchhhhH
Confidence 34788889999999999865443
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0022 Score=64.30 Aligned_cols=123 Identities=14% Similarity=0.078 Sum_probs=85.2
Q ss_pred EEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCc-ccEEEeccccccc
Q 006149 72 ILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDET-FDVILDKGGLDAL 147 (659)
Q Consensus 72 ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~s-FDvVi~~g~l~~l 147 (659)
|.||||.-|.++..|.+.|. ..++++|+++..++.+++.....+ .++.+.++|-.+. ++.+. .|.|+..|+-..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCHHH
Confidence 68999999999999999976 569999999999999988776655 5799999997652 33343 7999877755443
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeCCC
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQK 206 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~ 206 (659)
+...|++....++....|++........++..+. ..+|.+.-..+-..
T Consensus 80 ---------I~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~--~~gf~I~~E~lv~e 127 (205)
T PF04816_consen 80 ---------IIEILEAGPEKLSSAKRLILQPNTHAYELRRWLY--ENGFEIIDEDLVEE 127 (205)
T ss_dssp ---------HHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHH--HTTEEEEEEEEEEE
T ss_pred ---------HHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHH--HCCCEEEEeEEEeE
Confidence 5688888888888777888887765544333322 34788776666443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00038 Score=69.30 Aligned_cols=92 Identities=18% Similarity=0.238 Sum_probs=70.9
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC---CCcccEEEeccccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM---DETFDVILDKGGLD 145 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~---~~sFDvVi~~g~l~ 145 (659)
..++|||||=+...... ..+.-+|+.||+++ ..-.+.+.|+.+.|.| +++||+|.+.-+|.
T Consensus 52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns--------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNS--------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred cceEEeecccCCCCccc--ccCceeeEEeecCC--------------CCCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 47999999965543322 23434799999987 1224578888888764 67999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeE-----EEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGK-----FVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~-----lvi~~~~ 180 (659)
+++++. .+-.++..++++|+|+|. ++++.+.
T Consensus 116 fVP~p~----~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 116 FVPDPK----QRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred eCCCHH----HHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 998765 378999999999999999 7777654
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00098 Score=72.37 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=51.1
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (659)
+...+.+++.. .+ .+|||+-||.|.++..|++.. .+|+|||+++.+++.|++.+..++ .+++|+++++.++
T Consensus 185 l~~~~~~~l~~---~~-~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 185 LYEQALEWLDL---SK-GDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHCTT----T-TEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred HHHHHHHHhhc---CC-CcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 33445566654 33 389999999999999998875 499999999999998877665554 7899999887553
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00058 Score=75.79 Aligned_cols=83 Identities=11% Similarity=0.113 Sum_probs=65.6
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCC-
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFM- 131 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~- 131 (659)
.....+++.. .++.++||+=||.|.++..|++... +|+|+|+++.+++.|++.++.++ .|++|..+|+.++...
T Consensus 282 ~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 282 YETALEWLEL---AGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHHHHhh---cCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc
Confidence 3345555554 5678999999999999999997754 99999999999998877665554 5799999999987422
Q ss_pred --CCcccEEEe
Q 006149 132 --DETFDVILD 140 (659)
Q Consensus 132 --~~sFDvVi~ 140 (659)
...||+|+.
T Consensus 358 ~~~~~~d~Vvv 368 (432)
T COG2265 358 WEGYKPDVVVV 368 (432)
T ss_pred cccCCCCEEEE
Confidence 357899984
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.002 Score=69.99 Aligned_cols=115 Identities=23% Similarity=0.164 Sum_probs=83.3
Q ss_pred CCCCCeEEEECCCcchHHHHHHHcCC---CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC---CCCCcccEE
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDAGF---HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---FMDETFDVI 138 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~g~---~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~---~~~~sFDvV 138 (659)
+.++.+|||+.++.|.=|.+++.... ..|+++|.++.-+..+.++..+-+ .++...+.|...++ ...+.||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 37899999999999999999988732 246999999999988877776555 45788888877653 222359999
Q ss_pred Ee------cccccccCCc------ccc---hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 LD------KGGLDALMEP------ELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i~------~g~l~~l~~~------~~~---~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+. .|++.--++. .+- ...-.++|....++|||||+++.+|.+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 94 3334211110 000 012678999999999999999999976
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=75.71 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=81.3
Q ss_pred cchhHHHHHHHHhhCCCCC----CCCCeEEEECCCcchHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHHhhcC
Q 006149 48 AEWPQLRDPLISLIGAPTS----SPPPQILVPGCGNSRLSEHLYDAG---------FHGITNVDFSKVVISDMLRRNVRD 114 (659)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~----~~~~~ILDiGCG~G~~s~~La~~g---------~~~VtgvD~S~~~i~~~~~~~~~~ 114 (659)
.....+...+.+++..... ....+|||+|||+|.+...+++.. ..+++|+|+++.++..++......
T Consensus 7 yTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~ 86 (524)
T TIGR02987 7 FTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF 86 (524)
T ss_pred CCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc
Confidence 3345566666665532100 134699999999999998777641 147899999999998776654332
Q ss_pred C-CCcEEEEeecCCCC-----CCCCcccEEEecccccccCCcccch----------------------------------
Q 006149 115 R-SDMRWRVMDMTSMQ-----FMDETFDVILDKGGLDALMEPELGH---------------------------------- 154 (659)
Q Consensus 115 ~-~~i~~~~~D~~~l~-----~~~~sFDvVi~~g~l~~l~~~~~~~---------------------------------- 154 (659)
. ..+...+.|..... -..+.||+|+.+...--+.......
T Consensus 87 ~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (524)
T TIGR02987 87 ALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRK 166 (524)
T ss_pred CCCCceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcc
Confidence 2 23445555533221 1125799999876655332110000
Q ss_pred -----HHHHHHH-HHHHhccccCeEEEEEEcC
Q 006149 155 -----KLGNQYL-SEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 155 -----~~~~~~l-~ei~rvLkpGG~lvi~~~~ 180 (659)
.....++ ..+.++|++||++.++...
T Consensus 167 ~~g~~~~y~~~f~~~~~~lL~~~G~~~~I~P~ 198 (524)
T TIGR02987 167 YAGVGTEYSRVFEEISLEIANKNGYVSIISPA 198 (524)
T ss_pred cCCcccHHHHHHHHHHHHhcCCCCEEEEEECh
Confidence 0111234 5678999999999998864
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0013 Score=67.11 Aligned_cols=112 Identities=17% Similarity=0.284 Sum_probs=87.0
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ 129 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~ 129 (659)
...+..+|.. .|+.+|||-|.|+|.++..+++. .-++++..|+.+.-.+++++.++..+ .++++..-|+....
T Consensus 94 ia~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 94 IAMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred HHHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 4456777766 79999999999999999999886 34789999999998888888887665 68999999998876
Q ss_pred CC--CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCe-EEEEEEcC
Q 006149 130 FM--DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLA 180 (659)
Q Consensus 130 ~~--~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG-~lvi~~~~ 180 (659)
|. +..+|.|+ ||- +.+. .++..+..+||.+| ++++.+.+
T Consensus 171 F~~ks~~aDaVF----LDl-PaPw-------~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 171 FLIKSLKADAVF----LDL-PAPW-------EAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred ccccccccceEE----EcC-CChh-------hhhhhhHHHhhhcCceEEeccHH
Confidence 54 46788887 343 3333 56777777999866 67776655
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=64.73 Aligned_cols=124 Identities=19% Similarity=0.266 Sum_probs=94.0
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 006149 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (659)
Q Consensus 45 ewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~ 123 (659)
+|......+...+++=+...+..++.+||=+|+.+|....++++. |.+.|++|++|+.+...+...+ ..++|+--+..
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a-~~R~Ni~PIL~ 131 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVA-EKRPNIIPILE 131 (231)
T ss_pred eeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHH-HhCCCceeeec
Confidence 466666667777777666566788999999999999999999987 6568999999998888776655 56789999999
Q ss_pred ecCCCC---CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 124 DMTSMQ---FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 124 D~~~l~---~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
|+.... .--+..|+|+.- +. .+...+-+..++...||+||++++.-
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~D-----VA----Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQD-----VA----QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred ccCCcHHhhhhcccccEEEEe-----cC----CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 998742 112457888731 11 22236778899999999999877654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0021 Score=76.01 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=81.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc------C-----------------------------------
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA------G----------------------------------- 90 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~------g----------------------------------- 90 (659)
.+...++.+... ..++..++|.+||+|.+..+.+.. |
T Consensus 176 tlAaa~l~~a~w--~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 176 NLAAAILLRSGW--PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred HHHHHHHHHcCC--CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 444444444332 125689999999999998776542 0
Q ss_pred --CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCC--CCcccEEEecccccccCCcccchHHHHHHHHHH
Q 006149 91 --FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFM--DETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164 (659)
Q Consensus 91 --~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~--~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei 164 (659)
...++|+|+++.+++.+++.....+ ..+.+.++|+.+++.+ .++||+|+++..+..-..... ....+...+
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~---~l~~lY~~l 330 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEP---ALIALYSQL 330 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchH---HHHHHHHHH
Confidence 1259999999999998877665544 3589999999988643 357999999866543322111 123333333
Q ss_pred ---HhccccCeEEEEEEcC
Q 006149 165 ---KRLLKSGGKFVCLTLA 180 (659)
Q Consensus 165 ---~rvLkpGG~lvi~~~~ 180 (659)
.+...+|+.+++++..
T Consensus 331 g~~lk~~~~g~~~~llt~~ 349 (702)
T PRK11783 331 GRRLKQQFGGWNAALFSSS 349 (702)
T ss_pred HHHHHHhCCCCeEEEEeCC
Confidence 3333489999888754
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=5.3e-05 Score=74.00 Aligned_cols=96 Identities=18% Similarity=0.333 Sum_probs=71.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
.+.++||+|+|+|..+..++.. +.+|.+.+.|..|+.+.+++. -++ ....+-.-.+-+||+|.|-..|+-.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~----ynV----l~~~ew~~t~~k~dli~clNlLDRc 182 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKN----YNV----LTEIEWLQTDVKLDLILCLNLLDRC 182 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcC----Cce----eeehhhhhcCceeehHHHHHHHHhh
Confidence 4579999999999999998765 568999999998888765443 221 1111111123469999999999987
Q ss_pred CCcccchHHHHHHHHHHHhcccc-CeEEEEEEc
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKS-GGKFVCLTL 179 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkp-GG~lvi~~~ 179 (659)
.++- ++|+.++.+|+| +|+.++.-.
T Consensus 183 ~~p~-------kLL~Di~~vl~psngrvivaLV 208 (288)
T KOG3987|consen 183 FDPF-------KLLEDIHLVLAPSNGRVIVALV 208 (288)
T ss_pred cChH-------HHHHHHHHHhccCCCcEEEEEE
Confidence 7665 999999999999 888776543
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0007 Score=67.77 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=62.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhh-------c---CCCCcEEEEeecCCCCCCC---
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-------R---DRSDMRWRVMDMTSMQFMD--- 132 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~-------~---~~~~i~~~~~D~~~l~~~~--- 132 (659)
.+++..+|+|||.|......+-. ++...+||++.+...+.+..... . ...++.+..+|+.+.++..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~ 120 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW 120 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence 67899999999999998777644 77779999999987765543211 1 1246788888987754211
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
..-|+|+++.+.. +++ ....|.+...-||+|.++|..
T Consensus 121 s~AdvVf~Nn~~F---~~~-----l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 121 SDADVVFVNNTCF---DPD-----LNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HC-SEEEE--TTT----HH-----HHHHHHHHHTTS-TT-EEEES
T ss_pred cCCCEEEEecccc---CHH-----HHHHHHHHHhcCCCCCEEEEC
Confidence 3469999987653 222 446667888889999887654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00084 Score=65.53 Aligned_cols=120 Identities=14% Similarity=0.169 Sum_probs=84.5
Q ss_pred HHHhhCC-CCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcc
Q 006149 57 LISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (659)
Q Consensus 57 l~~~l~~-~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (659)
+.+++.. +..-.+.+|||+|.|+|.-+...+..|...|++.|+.+-.+....-..+.++-.+.+...|..- ++..|
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~ 143 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAF 143 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcce
Confidence 3444433 2234578999999999999999999998899999999776665544444455678888888766 36789
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeE-EEEEEcCCchhhcc
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGK-FVCLTLAESHVLGL 187 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~-lvi~~~~~~~~~~~ 187 (659)
|+|+....++.-.. ..+++. |.+.|+..|. +++-+...+++.+.
T Consensus 144 Dl~LagDlfy~~~~-------a~~l~~-~~~~l~~~g~~vlvgdp~R~~lpk~ 188 (218)
T COG3897 144 DLLLAGDLFYNHTE-------ADRLIP-WKDRLAEAGAAVLVGDPGRAYLPKK 188 (218)
T ss_pred eEEEeeceecCchH-------HHHHHH-HHHHHHhCCCEEEEeCCCCCCCchh
Confidence 99999888775322 447777 7777776665 45555555554443
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0024 Score=63.98 Aligned_cols=101 Identities=16% Similarity=0.057 Sum_probs=76.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC------CCCCCcccE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM------QFMDETFDV 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l------~~~~~sFDv 137 (659)
.+.+.||||.=||..+..+|.. .-+.|+++|+++...+...+.....+ ..|++++++..+. ..+.++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 4689999998888777766655 23689999999998887755544333 6799999987653 245689999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
++ +|+.. .....++.++.+++|+||++++-.
T Consensus 153 aF----vDadK------~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AF----VDADK------DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EE----Eccch------HHHHHHHHHHHhhcccccEEEEec
Confidence 98 34322 234589999999999999998865
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0033 Score=59.07 Aligned_cols=99 Identities=16% Similarity=0.236 Sum_probs=68.2
Q ss_pred CCCCeEEEECCCcchHHHHHHH-----cCCCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCCCCCCCcccE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYD-----AGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSMQFMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~-----~g~~~VtgvD~S~~~i~~~~~~~~~~~----~~i~~~~~D~~~l~~~~~sFDv 137 (659)
.+...|+|+|||.|.++..|+. ....+|++||.++..++.+.++..... .++.+..+++.+.+. ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 4678999999999999999998 433589999999999988877765433 356666666655432 456778
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
++ .||...+.. ..+++.+.+ ++-.++++.
T Consensus 103 ~v---gLHaCG~Ls------~~~l~~~~~---~~~~~l~~v 131 (141)
T PF13679_consen 103 LV---GLHACGDLS------DRALRLFIR---PNARFLVLV 131 (141)
T ss_pred EE---EeecccchH------HHHHHHHHH---cCCCEEEEc
Confidence 87 455554432 355555555 555555443
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0033 Score=62.12 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC----
Q 006149 517 SYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ---- 589 (659)
Q Consensus 517 ~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~---- 589 (659)
-|++.|+..+.+.+. + +.+.+||-||.|.|.++..+.+..|..+|++||+++.+++.|++.. ++..
T Consensus 28 ~~~~~~~d~l~l~~~-l------~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~ 100 (187)
T PRK00107 28 LWERHILDSLAIAPY-L------PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVV 100 (187)
T ss_pred HHHHHHHHHHHHHhh-c------CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEE
Confidence 577777766655432 1 2357999999999999999998889999999999999999998754 3210
Q ss_pred ---------CCCeeEE-eccc--chhHHHHHHHhhccCCCCcEEEecCchHHHHHHHhhcc
Q 006149 590 ---------DKSLKVF-NHLF--CLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVK 638 (659)
Q Consensus 590 ---------d~rl~vf-~~l~--~~~f~~~~~~~Lf~~~~~g~~~~n~~~~~~~~l~~~~~ 638 (659)
+.+.|+. ..-+ -..+.+.+.+.| +++|.++.-..+.....+..+.+
T Consensus 101 ~~d~~~~~~~~~fDlV~~~~~~~~~~~l~~~~~~L---kpGG~lv~~~~~~~~~~l~~~~~ 158 (187)
T PRK00107 101 HGRAEEFGQEEKFDVVTSRAVASLSDLVELCLPLL---KPGGRFLALKGRDPEEEIAELPK 158 (187)
T ss_pred eccHhhCCCCCCccEEEEccccCHHHHHHHHHHhc---CCCeEEEEEeCCChHHHHHHHHH
Confidence 1122222 1111 247888899999 99998876544433334444433
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0027 Score=66.80 Aligned_cols=114 Identities=21% Similarity=0.227 Sum_probs=84.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCcccEEEe-
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILD- 140 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDvVi~- 140 (659)
.++..|||+.+|.|.-+..+++. +.+.|++.|+++.-+..+..+..+.+ .++.....|..... .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 68899999999999999989886 24789999999999998877765544 56777778887761 23346999994
Q ss_pred ---c--ccccccCC------cccch---HHHHHHHHHHHhcc----ccCeEEEEEEcC
Q 006149 141 ---K--GGLDALME------PELGH---KLGNQYLSEVKRLL----KSGGKFVCLTLA 180 (659)
Q Consensus 141 ---~--g~l~~l~~------~~~~~---~~~~~~l~ei~rvL----kpGG~lvi~~~~ 180 (659)
. |++..-++ +++.. ..-.++|..+.+.+ ||||+++-+|.+
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 2 22322111 00000 12678999999999 999999999976
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0049 Score=59.78 Aligned_cols=106 Identities=20% Similarity=0.160 Sum_probs=70.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe-ecCCCC--------CCCCcc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-DMTSMQ--------FMDETF 135 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~-D~~~l~--------~~~~sF 135 (659)
.|+++|||+||..|.++....+. +.+-|.|||+-. ....+.+.++++ |+++.. .++...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----------IEPPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----------ccCCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 57899999999999999887776 336799999754 122345666666 777642 567889
Q ss_pred cEEEecccccccCCc----ccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 136 DVILDKGGLDALMEP----ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 136 DvVi~~g~l~~l~~~----~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
|+|++-..-.+.... .....+-..++--....++|+|.|+|-.+...
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 999975433222111 10011233445555677899999999888643
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0042 Score=55.89 Aligned_cols=81 Identities=20% Similarity=0.123 Sum_probs=59.0
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------C---------CCeeEE-ec--c-
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------D---------KSLKVF-NH--L- 599 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------d---------~rl~vf-~~--l- 599 (659)
..+||-||.|.|.++..+.+.+|..++++||+++..++.|++++ ++.. | ++.|+. .. .
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 35899999999999999999999889999999999999998775 3321 0 011111 00 0
Q ss_pred cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
...++.+.+.+.| +++|.++.+.
T Consensus 100 ~~~~~l~~~~~~L---k~gG~li~~~ 122 (124)
T TIGR02469 100 LLQEILEAIWRRL---RPGGRIVLNA 122 (124)
T ss_pred hHHHHHHHHHHHc---CCCCEEEEEe
Confidence 1235777888888 8888877653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0023 Score=68.15 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=55.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++.++||+||++|.++..|.+.|. .|++||..+ |.... ...++|.....|......+.+.+|+++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-----l~~~L-~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-----MAQSL-MDTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-----cCHhh-hCCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 4789999999999999999999997 999999765 33333 3457899998888776433678999987543
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0015 Score=62.88 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=49.0
Q ss_pred eEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCCC--CCCCc-ccEEEec
Q 006149 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQ--FMDET-FDVILDK 141 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~~~D~~~l~--~~~~s-FDvVi~~ 141 (659)
.|+|+.||-|..+..+|+.. .+|++||+++..++.+ +.+++-. .++.++++|+.++. +.... ||+|+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a-~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECA-KHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHH-HHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHH-HHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 79999999999999999985 4899999999999866 4444433 58999999998862 22222 8999964
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0044 Score=61.35 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDvVi~~g~l 144 (659)
.++.+||++|-|-|.....+.+.....=+-|+.++.++++|+...-....++..+.+-..+. .++++.||-|+---.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 36899999999999998888777655667899999999999876655667787777655543 4678999999832111
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+. .....+.+.+.|+|||+|+|-....
T Consensus 180 e~y-------Edl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 180 ELY-------EDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred hHH-------HHHHHHHHHHhhhcCCCceEEEecC
Confidence 111 1266888899999999999865543
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0031 Score=56.51 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=59.3
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-CCCeeEE---------------------e--c
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVF---------------------N--H 598 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-d~rl~vf---------------------~--~ 598 (659)
.+||-+|.|.|++...+.+.. ..++++|||||..+++|++.+.... ++|++++ + +
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 489999999999999999998 7799999999999999999886542 3345333 0 0
Q ss_pred -----------ccchhHHHHHHHhhccCCCCcEEEe
Q 006149 599 -----------LFCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 599 -----------l~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
-....|.+.+.+.| +++|++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L---~~gG~~~~ 113 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLL---KPGGVLVF 113 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHE---EEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHc---CCCeEEEE
Confidence 12356777888888 88887754
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0067 Score=62.68 Aligned_cols=83 Identities=20% Similarity=0.167 Sum_probs=63.5
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---------CCCCCCCeeEE------eccc-chh
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---------GFTQDKSLKVF------NHLF-CLQ 603 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---------gl~~d~rl~vf------~~l~-~~~ 603 (659)
..+.+||=||.|.|.++..+...+|+.++++||++|.+++.|++.. .+..+...|+. .++- ...
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~~~ 107 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSNAALQWVPEHAD 107 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEehhhhhCCCHHH
Confidence 3457999999999999999999999899999999999999998741 01122334433 2332 356
Q ss_pred HHHHHHHhhccCCCCcEEEecC
Q 006149 604 LEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 604 f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+...+.++| +|+|.++.+.
T Consensus 108 ~l~~~~~~L---kpgG~l~~~~ 126 (255)
T PRK14103 108 LLVRWVDEL---APGSWIAVQV 126 (255)
T ss_pred HHHHHHHhC---CCCcEEEEEc
Confidence 778899999 9999988754
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.003 Score=63.34 Aligned_cols=81 Identities=25% Similarity=0.392 Sum_probs=62.9
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeE--------------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKV-------------------- 595 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~v-------------------- 595 (659)
-+|++||-||-|.|--+.++....| +.+|+.||+||+..++|+++| |+ +.|+++
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHHHHhccCCCc
Confidence 3578999999999999999998887 589999999999999999999 44 234422
Q ss_pred Eecc-------cchhHHHHHHHhhccCCCCcEEEe-cC
Q 006149 596 FNHL-------FCLQLEEDVNLVLFGLSSESCIKD-NS 625 (659)
Q Consensus 596 f~~l-------~~~~f~~~~~~~Lf~~~~~g~~~~-n~ 625 (659)
|+-+ .-..+++.+...| +++|++++ |.
T Consensus 122 fD~VFiDa~K~~y~~y~~~~~~ll---~~ggvii~DN~ 156 (205)
T PF01596_consen 122 FDFVFIDADKRNYLEYFEKALPLL---RPGGVIIADNV 156 (205)
T ss_dssp EEEEEEESTGGGHHHHHHHHHHHE---EEEEEEEEETT
T ss_pred eeEEEEcccccchhhHHHHHhhhc---cCCeEEEEccc
Confidence 2222 2345677788888 99998766 55
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0091 Score=61.65 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=64.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-----------CCCCeeEE------ecc-cch
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----------QDKSLKVF------NHL-FCL 602 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-----------~d~rl~vf------~~l-~~~ 602 (659)
...+||=||.|.|.+...+...+|..++++||+++.+++.|++.+.-. .++..|+. .++ ...
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~~ 110 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFANASLQWLPDHL 110 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEccChhhCCCHH
Confidence 457999999999999999999999889999999999999999886311 11233333 233 245
Q ss_pred hHHHHHHHhhccCCCCcEEEecC
Q 006149 603 QLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+.+.+.++| +++|.++...
T Consensus 111 ~~l~~~~~~L---kpgG~~~~~~ 130 (258)
T PRK01683 111 ELFPRLVSLL---APGGVLAVQM 130 (258)
T ss_pred HHHHHHHHhc---CCCcEEEEEC
Confidence 7888999999 9999888754
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0081 Score=59.01 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=61.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------C------CCeeEE--ec--ccc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------D------KSLKVF--NH--LFC 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------d------~rl~vf--~~--l~~ 601 (659)
...+||=||.|.|.++..+.+.+|+.++++||++|.+++.|++.+ ++.. | .+.|+. .. -..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~~~ 110 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGGNL 110 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCccCH
Confidence 456899999999999999999999899999999999999998754 3321 0 112221 11 113
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.++.+.+.+.| +++|.++.+.
T Consensus 111 ~~~l~~~~~~L---k~gG~lv~~~ 131 (187)
T PRK08287 111 TAIIDWSLAHL---HPGGRLVLTF 131 (187)
T ss_pred HHHHHHHHHhc---CCCeEEEEEE
Confidence 45777888899 9999988765
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0097 Score=61.30 Aligned_cols=80 Identities=10% Similarity=0.061 Sum_probs=59.1
Q ss_pred CCCeEEEEccCcchHHHHHHh--hCCCccEEEEecChhHHHHHHhhcCCC-CCCCe---------------eEE------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHE--CMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSL---------------KVF------ 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~--~~p~~~i~~VEiDp~V~~vA~~~Fgl~-~d~rl---------------~vf------ 596 (659)
...+||-||.|.|.+...+.. ..|+.++++||++|.+++.|++.+.-. ...++ |+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 346899999999999888877 468899999999999999999876321 11122 211
Q ss_pred eccc---chhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHLF---CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l~---~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++- -..+++.+.++| +|+|.++.
T Consensus 136 ~~l~~~~~~~~l~~i~~~L---kpGG~l~l 162 (247)
T PRK15451 136 QFLEPSERQALLDKIYQGL---NPGGALVL 162 (247)
T ss_pred HhCCHHHHHHHHHHHHHhc---CCCCEEEE
Confidence 1221 146788999999 99998755
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0058 Score=51.90 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=55.4
Q ss_pred EEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC--------------CCCCeeEE------ecc-cchhH
Q 006149 546 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--------------QDKSLKVF------NHL-FCLQL 604 (659)
Q Consensus 546 LiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~--------------~d~rl~vf------~~l-~~~~f 604 (659)
|-||.|.|.....|..+ +..+++++|+++.+++.|++.+.-. ++...|+. .|+ .-..+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~ 79 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAA 79 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHH
Confidence 56999999999999999 7789999999999999999987432 12222332 344 34567
Q ss_pred HHHHHHhhccCCCCcEEEe
Q 006149 605 EEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 605 ~~~~~~~Lf~~~~~g~~~~ 623 (659)
.+.++++| +|+|.+++
T Consensus 80 l~e~~rvL---k~gG~l~~ 95 (95)
T PF08241_consen 80 LREIYRVL---KPGGRLVI 95 (95)
T ss_dssp HHHHHHHE---EEEEEEEE
T ss_pred HHHHHHHc---CcCeEEeC
Confidence 78999999 99998763
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0076 Score=60.76 Aligned_cols=83 Identities=14% Similarity=0.189 Sum_probs=66.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhcCCC-CCCCeeEE---------------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVF--------------------- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~Fgl~-~d~rl~vf--------------------- 596 (659)
..+++||-||-+.|--+.++....| +.+++.||+||+.+++|+++|.-. -++++.++
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 4679999999999999999999999 889999999999999999999322 13333211
Q ss_pred ---ecccchhHHHHHHHhhccCCCCcEEEe-cC
Q 006149 597 ---NHLFCLQLEEDVNLVLFGLSSESCIKD-NS 625 (659)
Q Consensus 597 ---~~l~~~~f~~~~~~~Lf~~~~~g~~~~-n~ 625 (659)
+.-...+|++.+-..| +++|+++. |.
T Consensus 138 IDadK~~yp~~le~~~~lL---r~GGliv~DNv 167 (219)
T COG4122 138 IDADKADYPEYLERALPLL---RPGGLIVADNV 167 (219)
T ss_pred EeCChhhCHHHHHHHHHHh---CCCcEEEEeec
Confidence 1234678999999999 99998876 55
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.011 Score=60.45 Aligned_cols=81 Identities=11% Similarity=0.118 Sum_probs=59.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhC--CCccEEEEecChhHHHHHHhhcCCC-CCCCe---------------eEE------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYFGFT-QDKSL---------------KVF------ 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~--p~~~i~~VEiDp~V~~vA~~~Fgl~-~d~rl---------------~vf------ 596 (659)
...+||-||.|.|.+...+...+ |+.++++||+++.+++.|++.+.-. ...++ ++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l 132 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 132 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence 44689999999999999888764 7899999999999999999875321 11122 211
Q ss_pred eccc---chhHHHHHHHhhccCCCCcEEEec
Q 006149 597 NHLF---CLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 597 ~~l~---~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
.++. -..+++.++++| +|+|.+...
T Consensus 133 ~~~~~~~~~~~l~~i~~~L---kpgG~l~i~ 160 (239)
T TIGR00740 133 QFLPPEDRIALLTKIYEGL---NPNGVLVLS 160 (239)
T ss_pred hhCCHHHHHHHHHHHHHhc---CCCeEEEEe
Confidence 1221 256788999999 999987663
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.013 Score=57.49 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=58.9
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC-------------CCCeeEE--ecc-cch
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ-------------DKSLKVF--NHL-FCL 602 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~-------------d~rl~vf--~~l-~~~ 602 (659)
..+||=||.|.|.+...+....|..++++||+++.+++.|++.. ++.. +...|+. ..+ .-.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~~~~~~ 122 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRALASLN 122 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehhhhCHH
Confidence 47999999999999999988888889999999999998887653 4421 1122222 111 123
Q ss_pred hHHHHHHHhhccCCCCcEEEecC
Q 006149 603 QLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+++.+.++| +++|.++.-.
T Consensus 123 ~~~~~~~~~L---kpgG~lvi~~ 142 (181)
T TIGR00138 123 VLLELTLNLL---KVGGYFLAYK 142 (181)
T ss_pred HHHHHHHHhc---CCCCEEEEEc
Confidence 5667788888 9999887644
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0031 Score=61.07 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=74.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc-CCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~-~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
..+.+.|+|+|+|.++...+.. ..+|++|+..+...+.+.+...- ...++.++.+|+.+..| +.-|+|+|...=-+
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHH
Confidence 3479999999999999887776 45899999999776655333222 23679999999999888 46799998654334
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
+.... ....++.+...||.++.++
T Consensus 109 Li~E~-----qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 109 LIEEK-----QVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hhccc-----ccHHHHHHHHHhhcCCccc
Confidence 44433 3477888888999888876
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.01 Score=59.82 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=64.7
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC------------C-CCCCeeEE------ecc-
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF------------T-QDKSLKVF------NHL- 599 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl------------~-~d~rl~vf------~~l- 599 (659)
..+.+||-||.|.|.+..++...+|..++++||+++.+++.|++.++- + .++..|+. .++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 345789999999999999999999999999999999999999988641 0 12233433 122
Q ss_pred cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
....+.+.++++| +++|.+....
T Consensus 113 ~~~~~l~~~~~~L---~~~G~l~~~~ 135 (240)
T TIGR02072 113 DLSQALSELARVL---KPGGLLAFST 135 (240)
T ss_pred CHHHHHHHHHHHc---CCCcEEEEEe
Confidence 3456888999999 9999888755
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.011 Score=61.09 Aligned_cols=110 Identities=13% Similarity=0.063 Sum_probs=68.9
Q ss_pred CCCeEEEECCCcc--hHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCCCC-----------C
Q 006149 68 PPPQILVPGCGNS--RLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQ-----------F 130 (659)
Q Consensus 68 ~~~~ILDiGCG~G--~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~--i~~~~~D~~~l~-----------~ 130 (659)
.-...||||||-= ....++++. ...+|+-||+.+.++..++.... ..++ ..++++|+.+.. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~-~~~~g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA-DNPRGRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT-T-TTSEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc-CCCCccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 3468999999953 345556554 45799999999999987766654 3345 889999998842 1
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
.-...=.|+..++|+++.+.++ ...++..++..|.||.+++++..+.+
T Consensus 147 D~~rPVavll~~vLh~v~D~~d----p~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 147 DFDRPVAVLLVAVLHFVPDDDD----PAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp -TTS--EEEECT-GGGS-CGCT----HHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCCeeeeeeeeeccCCCccC----HHHHHHHHHHhCCCCceEEEEecCCC
Confidence 1122236778899999977543 57999999999999999999987744
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0011 Score=58.88 Aligned_cols=96 Identities=18% Similarity=0.099 Sum_probs=43.3
Q ss_pred EEECCCcchHHHHHHHc----CCCeEEEEcCCHH---HHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCcccEEEeccc
Q 006149 73 LVPGCGNSRLSEHLYDA----GFHGITNVDFSKV---VISDMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILDKGG 143 (659)
Q Consensus 73 LDiGCG~G~~s~~La~~----g~~~VtgvD~S~~---~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDvVi~~g~ 143 (659)
||+||..|..+..+++. +..+++++|..+. .-+.+ ++ .....+++++.+|..+. .++.++||+|+.-+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~-~~-~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEII-KK-AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhh-hh-cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999988887764 2237999999994 22222 11 12235799999998764 344578999996542
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
-. .......+..+.+.|+|||++++-+
T Consensus 79 H~--------~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--------YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--------HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11 1226688999999999999998764
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0081 Score=60.83 Aligned_cols=99 Identities=10% Similarity=0.134 Sum_probs=73.6
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC------------CC-CCeeEE------ecc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT------------QD-KSLKVF------NHL 599 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~------------~d-~rl~vf------~~l 599 (659)
..+||=||-|||.|+.-+.+.. .+|+++|+++..+++|+.|= |+. .+ .+.||. +|+
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 4799999999999999999986 79999999999999999775 222 11 244544 787
Q ss_pred c-chhHHHHHHHhhccCCCCcEEEecCc---hH----HHHHHHhhcc-CCccccc
Q 006149 600 F-CLQLEEDVNLVLFGLSSESCIKDNSF---PE----AAVQLGKLVK-FQHLEIS 645 (659)
Q Consensus 600 ~-~~~f~~~~~~~Lf~~~~~g~~~~n~~---~~----~~~~l~~~~~-f~~~~~~ 645 (659)
- -..|...|...+ +|+|++..-.. .. +....+.+++ +|...|-
T Consensus 138 ~dp~~~~~~c~~lv---kP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~ 189 (243)
T COG2227 138 PDPESFLRACAKLV---KPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHD 189 (243)
T ss_pred CCHHHHHHHHHHHc---CCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchh
Confidence 4 556899999999 99999977442 22 2224566666 6655553
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0081 Score=62.69 Aligned_cols=105 Identities=22% Similarity=0.252 Sum_probs=68.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHh-h-cC---------------------------CC--
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN-V-RD---------------------------RS-- 116 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~-~-~~---------------------------~~-- 116 (659)
...+||..|||.|+++..|+..|+ .+-|=++|--|+-.-.=.. . .. .|
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 467999999999999999999998 6777788776653111000 0 00 00
Q ss_pred ----------CcEEEEeecCCC---CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 117 ----------DMRWRVMDMTSM---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 117 ----------~i~~~~~D~~~l---~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.+....+|+.+. +-..++||+|+....+|.-. ++-.+++.+..+|||||+.+=..+.
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~-------NileYi~tI~~iLk~GGvWiNlGPL 298 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH-------NILEYIDTIYKILKPGGVWINLGPL 298 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH-------HHHHHHHHHHHhccCCcEEEeccce
Confidence 112223444442 11234799999776555422 2678999999999999998865543
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0074 Score=58.50 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=68.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC----------------CCCeeEE-e------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ----------------DKSLKVF-N------ 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~----------------d~rl~vf-~------ 597 (659)
...+||=||.|.|.++..+.+..|..+|++|||++..++.|++-+.... +.+.|+. .
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 4578999999999999999999999999999999999999998663221 1233432 0
Q ss_pred ----c-ccchhHHHHHHHhhccCCCCcEE--EecCchHHHHHHHhhc
Q 006149 598 ----H-LFCLQLEEDVNLVLFGLSSESCI--KDNSFPEAAVQLGKLV 637 (659)
Q Consensus 598 ----~-l~~~~f~~~~~~~Lf~~~~~g~~--~~n~~~~~~~~l~~~~ 637 (659)
. -....|.+.+.+.| +++|.+ +.|..-.....|+++.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~L---k~~G~l~lv~~~~~~~~~~l~~~f 154 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYL---KPGGRLFLVINSHLGYERLLKELF 154 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHE---EEEEEEEEEEETTSCHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHhc---cCCCEEEEEeecCCChHHHHHHhc
Confidence 0 13577888999999 999955 5555333333344443
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0097 Score=63.17 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=78.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHH--hh---c---CCCCcEEEEeecCCC-CCCCCcccE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRR--NV---R---DRSDMRWRVMDMTSM-QFMDETFDV 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~--~~---~---~~~~i~~~~~D~~~l-~~~~~sFDv 137 (659)
...++|.+|.|.|....++.+.+ +.+|+-||.+|.||+.++.. .+ + ..++++++..|+.+. .-..+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 45799999999999999999985 78999999999999976521 11 1 127899999998775 233468999
Q ss_pred EEecccccccCCcccch---HHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGH---KLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~---~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+.. +.++.+.. ---..+...+.+.|+++|.+++-.-+
T Consensus 369 vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 369 VIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred EEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 9842 22332211 11456778889999999999887644
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.00039 Score=60.67 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=48.3
Q ss_pred EEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCC-------------------CeeEE------ecc-
Q 006149 546 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDK-------------------SLKVF------NHL- 599 (659)
Q Consensus 546 LiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~-------------------rl~vf------~~l- 599 (659)
|-||.|.|.+...|...+|..++++||++|.+++.|++.+.-.... ..|+. +|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 4689999999999999999999999999999998887776322111 11211 344
Q ss_pred cchhHHHHHHHhhccCCCCcEE
Q 006149 600 FCLQLEEDVNLVLFGLSSESCI 621 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~ 621 (659)
.-..+++.+++.| +|+|++
T Consensus 81 ~~~~~l~~~~~~L---~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLL---KPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT----TSS-EE
T ss_pred hHHHHHHHHHHHc---CCCCCC
Confidence 3456777888888 888875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.02 Score=57.16 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=61.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------C-----------CCeeEEecc-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------D-----------KSLKVFNHL- 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------d-----------~rl~vf~~l- 599 (659)
+..+||-||.|.|.+...+...+|..++++||+++.+++.|++.+ +++. | ..+|+.-..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 456899999999999999999899999999999999999998765 2210 1 111221000
Q ss_pred --------------cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 --------------FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 --------------~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
....|.+.+.++| +|+|++..-+
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~L---kpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKL---KPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHc---CCCCEEEEEc
Confidence 1356889999999 9999886644
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.016 Score=61.31 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=65.6
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC
Q 006149 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (659)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~ 127 (659)
..+.+...+.+++.. .++..++|.-||.|..+..+++. +.+.|+|+|.++.+++.++++......++.+++++..+
T Consensus 4 H~pVll~Evl~~L~~---~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 4 HQSVLLDEVVEGLNI---KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred CcchhHHHHHHhcCc---CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 345566666676654 57789999999999999999876 34799999999999998877765444578888877776
Q ss_pred CC-----CCCCcccEEEe
Q 006149 128 MQ-----FMDETFDVILD 140 (659)
Q Consensus 128 l~-----~~~~sFDvVi~ 140 (659)
+. ....++|.|+.
T Consensus 81 l~~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILV 98 (305)
T ss_pred HHHHHHhcCCCcccEEEE
Confidence 52 12245666663
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.011 Score=55.13 Aligned_cols=58 Identities=5% Similarity=-0.082 Sum_probs=46.9
Q ss_pred eEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 006149 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (659)
.+||+|||.|..+..++..+. .+|+++|.++.+++.+++.....+ +++.++...+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999988865 379999999999998877654433 5688888777663
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.049 Score=51.03 Aligned_cols=124 Identities=11% Similarity=0.121 Sum_probs=73.6
Q ss_pred eEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC--CCCCcccEEEecccccccCCcccc----hHHHHHHHHHH
Q 006149 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--FMDETFDVILDKGGLDALMEPELG----HKLGNQYLSEV 164 (659)
Q Consensus 93 ~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--~~~~sFDvVi~~g~l~~l~~~~~~----~~~~~~~l~ei 164 (659)
+|+|.|+-+.+|+..+++..+.+ .++++++.+=.++. .+.+++|+++-+ |.+++..+.. +..--.+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 58999999999999999887664 46899888776663 233489988854 4444433211 12256789999
Q ss_pred HhccccCeEEEEEEcCC-ch-hhc-----chhhhh-ccCceEEEeeeCCCCCCCCCCccEEEEEEe
Q 006149 165 KRLLKSGGKFVCLTLAE-SH-VLG-----LLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADK 222 (659)
Q Consensus 165 ~rvLkpGG~lvi~~~~~-~~-~~~-----~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k 222 (659)
.++|+|||+++++.+.. +. ..+ .+.... ...|.+........ ..-+++.++.+|
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~----~~~pp~l~~ieK 140 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQ----KNNPPLLVIIEK 140 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-----SS---EEEEEEE
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCC----CCCCCEEEEEEC
Confidence 99999999999988762 21 111 222222 34677766665443 345667776654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.023 Score=58.23 Aligned_cols=56 Identities=20% Similarity=0.314 Sum_probs=48.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-CCCeeE
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKV 595 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-d~rl~v 595 (659)
+...+||=||-|.|+++.+|....++++|++|||+++.++.|++=..+.. .+|+++
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v 99 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQV 99 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeE
Confidence 34789999999999999999999998999999999999999999876642 346633
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.021 Score=56.60 Aligned_cols=79 Identities=19% Similarity=0.155 Sum_probs=60.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCCCCCeeE-------------------Eec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKV-------------------FNH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~v-------------------f~~ 598 (659)
...+||=||.|.|.++..+....|..++++||+||.+++.|++.+ ++. ++++ +-.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~---~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK---NVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---CeEEEECchHHHHhhCCCCCCEEEEE
Confidence 346899999999999999988888889999999999999999764 442 1211 100
Q ss_pred --ccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 --LFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 --l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.....+.+.+.++| +++|.++...
T Consensus 117 ~~~~~~~~l~~~~~~L---kpgG~li~~~ 142 (196)
T PRK07402 117 GGRPIKEILQAVWQYL---KPGGRLVATA 142 (196)
T ss_pred CCcCHHHHHHHHHHhc---CCCeEEEEEe
Confidence 11247788889999 9999887765
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.031 Score=58.93 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=58.8
Q ss_pred CCCeEEEEccCcc--hHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC--CCCCCe-----------------eEE--e
Q 006149 541 KSVKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF--TQDKSL-----------------KVF--N 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG--~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl--~~d~rl-----------------~vf--~ 597 (659)
.|++|+-||-|.| +...++..++|+.+++.+|+||+.++.||+++.- .-.+|+ |+. .
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999966 3333444688999999999999999999999931 112233 221 1
Q ss_pred cc------cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 HL------FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l------~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
-| .-.+..+.+.+.| +|+|+++.-.
T Consensus 203 ALi~~dk~~k~~vL~~l~~~L---kPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHM---APGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhc---CCCcEEEEec
Confidence 11 2345567888889 9999988765
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.017 Score=59.10 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=56.4
Q ss_pred cCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCe--------------eEE--ecc---
Q 006149 539 VGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSL--------------KVF--NHL--- 599 (659)
Q Consensus 539 ~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl--------------~vf--~~l--- 599 (659)
-...++|+=||+|.|.+..-+.+.+|+++++++|+ |.|++.|++ .+|+ |++ .++
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~~P~~D~~~l~~vLh~ 170 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDPLPVADVYLLRHVLHD 170 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTCCSSESEEEEESSGGG
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHhhhccccceeeehhhhh
Confidence 34557899999999999999999999999999999 999999998 3444 333 222
Q ss_pred ----cchhHHHHHHHhhccCCCC--cEEEe
Q 006149 600 ----FCLQLEEDVNLVLFGLSSE--SCIKD 623 (659)
Q Consensus 600 ----~~~~f~~~~~~~Lf~~~~~--g~~~~ 623 (659)
......+.++.+| .|+ |.+.+
T Consensus 171 ~~d~~~~~iL~~~~~al---~pg~~g~llI 197 (241)
T PF00891_consen 171 WSDEDCVKILRNAAAAL---KPGKDGRLLI 197 (241)
T ss_dssp S-HHHHHHHHHHHHHHS---EECTTEEEEE
T ss_pred cchHHHHHHHHHHHHHh---CCCCCCeEEE
Confidence 2455677888888 977 75543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.025 Score=57.77 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=41.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+.+||=+|.|.|.+...+...+|..++++||+++.+++.|++.+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~ 131 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA 131 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999998764
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.027 Score=55.84 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=61.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC-----------------CCCCeeEE-ec-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT-----------------QDKSLKVF-NH- 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~-----------------~d~rl~vf-~~- 598 (659)
...++|-||-|.|.+...+...+|+.++++||+++.+++.|++.. ++. ++..++.. .+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 346899999999999999999999999999999999999987642 221 01112211 10
Q ss_pred -------------ccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 -------------LFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 -------------l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+...+|.+.+.++| +++|.+...+
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~L---kpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVL---KKGGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 22357899999999 9999886654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.044 Score=55.47 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=57.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhc---CCC--------------CCCCeeEE------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFT--------------QDKSLKVF------ 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~d~rl~vf------ 596 (659)
...+||=||.|.|.++..+.+.+ |..++++||++|.+++.|++-+ +++ ++...|+.
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL 124 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence 34699999999999999998775 6779999999999999998765 221 01112221
Q ss_pred ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++ ....+.+.+.++| +++|.++.
T Consensus 125 ~~~~~~~~~l~~~~~~L---k~gG~l~~ 149 (231)
T TIGR02752 125 RNVPDYMQVLREMYRVV---KPGGKVVC 149 (231)
T ss_pred ccCCCHHHHHHHHHHHc---CcCeEEEE
Confidence 122 1245677888999 99997754
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.043 Score=59.61 Aligned_cols=115 Identities=18% Similarity=0.138 Sum_probs=81.7
Q ss_pred CCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC---CCCCcccEE
Q 006149 65 TSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---FMDETFDVI 138 (659)
Q Consensus 65 ~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~---~~~~sFDvV 138 (659)
.++++.+|||+.+..|.=+.++|.. +-+.|++.|.+..-+......+.+.+ .+......|...+| |+. +||-|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 3678999999999999988877765 34579999999988877766554444 56667778887664 554 89999
Q ss_pred E----ecc--cccccCCc---c------cchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 L----DKG--GLDALMEP---E------LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i----~~g--~l~~l~~~---~------~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+ |.| ++.--... . .-...-+++|.....++++||+++-+|.+
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 9 344 22110000 0 00112678899999999999999998875
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.012 Score=61.69 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=61.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCCCCCe--------------------eEEe
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSL--------------------KVFN 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl--------------------~vf~ 597 (659)
...+||-||.|.|+++.++.+.+ +++|++|.++++-.+.|++.. |+. +++ .+|+
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~--~~v~v~~~D~~~~~~~fD~IvSi~~~E 138 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLE--DRVEVRLQDYRDLPGKFDRIVSIEMFE 138 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSS--STEEEEES-GGG---S-SEEEEESEGG
T ss_pred CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEEeeccccCCCCCEEEEEechh
Confidence 44699999999999999999998 689999999999999998877 443 232 2336
Q ss_pred ccc---chhHHHHHHHhhccCCCCcEEEecCc
Q 006149 598 HLF---CLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 598 ~l~---~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
|+. -..|++.+++.| +|+|.+..+.+
T Consensus 139 hvg~~~~~~~f~~~~~~L---kpgG~~~lq~i 167 (273)
T PF02353_consen 139 HVGRKNYPAFFRKISRLL---KPGGRLVLQTI 167 (273)
T ss_dssp GTCGGGHHHHHHHHHHHS---ETTEEEEEEEE
T ss_pred hcChhHHHHHHHHHHHhc---CCCcEEEEEec
Confidence 773 368899999999 99999987763
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.052 Score=56.70 Aligned_cols=82 Identities=16% Similarity=0.294 Sum_probs=63.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCC---ccEEEEecChhHHHHHHhhcC-----------CC-CCCCeeEEecccchhHH
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPF---VGIEAVELDLTMLNLAEDYFG-----------FT-QDKSLKVFNHLFCLQLE 605 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~---~~i~~VEiDp~V~~vA~~~Fg-----------l~-~d~rl~vf~~l~~~~f~ 605 (659)
...+||=||-|.|.+...|.+.+|. ..+++||+++.+++.|++-++ ++ ++...|+.-.++...+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~~~~ 164 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAPCKA 164 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCCCCH
Confidence 3468999999999999999887764 378999999999999987642 11 13345655556677788
Q ss_pred HHHHHhhccCCCCcEEEecC
Q 006149 606 EDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 606 ~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+.++++| +|+|.++.-.
T Consensus 165 ~e~~rvL---kpgG~li~~~ 181 (272)
T PRK11088 165 EELARVV---KPGGIVITVT 181 (272)
T ss_pred HHHHhhc---cCCCEEEEEe
Confidence 8999999 9999886643
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.055 Score=54.83 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCc-EEEEeecCCCC---CCCCcccEEEecc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQ---FMDETFDVILDKG 142 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i-~~~~~D~~~l~---~~~~sFDvVi~~g 142 (659)
.++..+||+|.-||.++..+.+.|...|+|+|..-..+. -+. +..+++ .+...|+..+. +. +..|++++--
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~---~kL-R~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH---WKL-RNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC---HhH-hcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 468899999999999999999999999999999875544 222 233444 34456666553 32 3678888765
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
++-. ...+|..+..+++++|.++...-
T Consensus 153 SFIS----------L~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 153 SFIS----------LKLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred ehhh----------HHHHHHHHHHhcCCCceEEEEec
Confidence 5554 35889999999999998877654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.032 Score=58.08 Aligned_cols=80 Identities=19% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC---------------CCCeeEE------ecc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ---------------DKSLKVF------NHL 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~---------------d~rl~vf------~~l 599 (659)
...+||=||.|.|.++..+...+ ..++++||++|.+++.|++.+.... +...|+. .|+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~ 130 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHL 130 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhC
Confidence 44689999999999999887765 4699999999999999998764310 1122322 122
Q ss_pred ---cchhHHHHHHHhhccCCCCcEEEec
Q 006149 600 ---FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 600 ---~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
....+++.+.++| +|+|.++..
T Consensus 131 ~~~d~~~~l~~i~r~L---kPGG~lvi~ 155 (263)
T PTZ00098 131 SYADKKKLFEKCYKWL---KPNGILLIT 155 (263)
T ss_pred CHHHHHHHHHHHHHHc---CCCcEEEEE
Confidence 1245778899999 999988764
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.036 Score=55.79 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=59.5
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC---CCC-----------C---CCeeEE------ecc
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---FTQ-----------D---KSLKVF------NHL 599 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg---l~~-----------d---~rl~vf------~~l 599 (659)
++||-||.|.|.+...+...+|..++++||+++.+++.|++.+. +.. + ...|+. .|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 37999999999999999888888899999999999999998652 211 0 112222 222
Q ss_pred -cchhHHHHHHHhhccCCCCcEEEec
Q 006149 600 -FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 600 -~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
....+++.++++| +|+|.+...
T Consensus 81 ~~~~~~l~~~~~~L---kpgG~l~i~ 103 (224)
T smart00828 81 KDKMDLFSNISRHL---KDGGHLVLA 103 (224)
T ss_pred CCHHHHHHHHHHHc---CCCCEEEEE
Confidence 1357888999999 999987753
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.051 Score=54.68 Aligned_cols=82 Identities=12% Similarity=0.129 Sum_probs=56.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhc---CCC--------------CCCCeeEE-ecccc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFT--------------QDKSLKVF-NHLFC 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~d~rl~vf-~~l~~ 601 (659)
...+||-||.|.|.++..+.+.. ++.++++||+||.+++.|++.+ |+. ++...|+. -.-..
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCc
Confidence 34689999999999999888875 4569999999999999999876 221 11122322 11112
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+..+.+.+.| +++|.++...
T Consensus 156 ~~~~~~l~~~L---kpgG~lvi~~ 176 (212)
T PRK13942 156 PDIPKPLIEQL---KDGGIMVIPV 176 (212)
T ss_pred ccchHHHHHhh---CCCcEEEEEE
Confidence 33445667778 9999877643
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.028 Score=60.29 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=61.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC------------------CCCCeeEE------e
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------------QDKSLKVF------N 597 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~------------------~d~rl~vf------~ 597 (659)
..+||=||.|+|.+...|.+. +.+|++||+++.+++.|++++... ++...|+. +
T Consensus 132 g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 358999999999999988864 579999999999999999886431 11233332 5
Q ss_pred cc-cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 HL-FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l-~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
|+ .-..|.+.++++| +|+|.++...
T Consensus 210 Hv~d~~~~L~~l~r~L---kPGG~liist 235 (322)
T PLN02396 210 HVANPAEFCKSLSALT---IPNGATVLST 235 (322)
T ss_pred hcCCHHHHHHHHHHHc---CCCcEEEEEE
Confidence 55 3567889999999 9999887654
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.02 Score=59.26 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=58.4
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC----------------CCCeeEE----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ----------------DKSLKVF---- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~----------------d~rl~vf---- 596 (659)
..+.+||-||.|.|.++..+.... .++++||++|.+++.|++.. |+.. +...|+.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 345799999999999999998863 68999999999999999865 2211 1122322
Q ss_pred --eccc-chhHHHHHHHhhccCCCCcEEEe
Q 006149 597 --NHLF-CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 --~~l~-~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+++. ...+.+.+.++| +|+|.++.
T Consensus 121 vl~~~~~~~~~l~~~~~~L---kpgG~l~i 147 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVL---RPGGALSL 147 (255)
T ss_pred HHHhhCCHHHHHHHHHHHc---CCCeEEEE
Confidence 2232 345678899999 99998865
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.02 Score=56.40 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=66.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC--------CCCcEEEEeecCCCCCCCCcccEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--------RSDMRWRVMDMTSMQFMDETFDVI 138 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~--------~~~i~~~~~D~~~l~~~~~sFDvV 138 (659)
....+.|||||.|.+...|+.. +..-|.|.+|-..+-+..+++.... .+++.....+...+- .+-|.--
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l--pn~f~kg 137 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL--PNFFEKG 137 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc--cchhhhc
Confidence 3568999999999999999877 4467899988777766666554332 245666665554431 1111111
Q ss_pred EecccccccCCcccchH------HHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 LDKGGLDALMEPELGHK------LGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~------~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
...-.+..++++..-.. .-..++.+..-+|++||.++.++-.
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 11111111222211000 0347889999999999999988754
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.016 Score=57.65 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=55.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCC----CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSM----QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~~~D~~~l----~~~~~sFDvVi~ 140 (659)
....|+|.-||-|..+...+..+. .|++||+++.-|.-+ +.+++-. .+++|+|+|+.++ .+....+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~A-khNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACA-RHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHH-hccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 357999999999999999998876 899999999998744 5554432 5899999999875 344445667764
Q ss_pred c
Q 006149 141 K 141 (659)
Q Consensus 141 ~ 141 (659)
.
T Consensus 172 s 172 (263)
T KOG2730|consen 172 S 172 (263)
T ss_pred C
Confidence 4
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.068 Score=57.80 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=60.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC---------------CCCCeeEE-----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT---------------QDKSLKVF----- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~---------------~d~rl~vf----- 596 (659)
..+.+||=||.|.|.+...|...+ +.+|++||+++.+++.|++.. |+. ++...|+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 345789999999999999999877 569999999999999988753 221 12233332
Q ss_pred -eccc-chhHHHHHHHhhccCCCCcEEEe
Q 006149 597 -NHLF-CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 -~~l~-~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.|+. ...+++.++++| +|+|.++.
T Consensus 196 ~~h~~d~~~~l~e~~rvL---kpGG~lvi 221 (340)
T PLN02244 196 GEHMPDKRKFVQELARVA---APGGRIII 221 (340)
T ss_pred hhccCCHHHHHHHHHHHc---CCCcEEEE
Confidence 3432 356888999999 99998765
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.059 Score=54.15 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=59.4
Q ss_pred CCCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhcCC-C---------------CCCCeeEE------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGF-T---------------QDKSLKVF------ 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~Fgl-~---------------~d~rl~vf------ 596 (659)
....+||-||.|.|.+...+...+ |..++++||+++..++.|++.... . .+...|+.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 345799999999999999888877 778999999999999999886211 0 01122322
Q ss_pred ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++ ....+++.+.++| +++|.+..
T Consensus 98 ~~~~~~~~~l~~~~~~L---~~gG~l~~ 122 (241)
T PRK08317 98 QHLEDPARALAEIARVL---RPGGRVVV 122 (241)
T ss_pred hccCCHHHHHHHHHHHh---cCCcEEEE
Confidence 222 2456888999999 99997654
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.028 Score=55.90 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=55.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC-------------CCCeeEE------ec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ-------------DKSLKVF------NH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~-------------d~rl~vf------~~ 598 (659)
.+.+||-+|.|.|.++.+|... ..+|++||++|.+++.|++.. ++.. +...|+. .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMF 107 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhh
Confidence 3479999999999999999886 358999999999999988754 2210 1112322 11
Q ss_pred c---cchhHHHHHHHhhccCCCCcEE
Q 006149 599 L---FCLQLEEDVNLVLFGLSSESCI 621 (659)
Q Consensus 599 l---~~~~f~~~~~~~Lf~~~~~g~~ 621 (659)
+ ....+...+.++| +++|.+
T Consensus 108 ~~~~~~~~~l~~i~~~L---kpgG~~ 130 (197)
T PRK11207 108 LEAKTIPGLIANMQRCT---KPGGYN 130 (197)
T ss_pred CCHHHHHHHHHHHHHHc---CCCcEE
Confidence 2 1247788999999 999974
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.053 Score=56.39 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=58.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhcCC-------------------C-CCCCeeEE---
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGF-------------------T-QDKSLKVF--- 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~Fgl-------------------~-~d~rl~vf--- 596 (659)
...+||-||.|.|.++..+.+.+ |+.+|++||+++.+++.|++-... + ++...|+.
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 45689999999999999988775 567999999999999999864321 1 11122322
Q ss_pred ---ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 ---NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ---~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++ .-..+...++++| +|+|.++.
T Consensus 153 ~~l~~~~d~~~~l~ei~rvL---kpGG~l~i 180 (261)
T PLN02233 153 YGLRNVVDRLKAMQEMYRVL---KPGSRVSI 180 (261)
T ss_pred cccccCCCHHHHHHHHHHHc---CcCcEEEE
Confidence 122 2356788999999 99997655
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.046 Score=55.92 Aligned_cols=81 Identities=15% Similarity=0.263 Sum_probs=59.7
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeEE-------------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVF------------------- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~vf------------------- 596 (659)
..+++||-||-|.|....++....| ..+++.||+||..+++|+++| |+. +++++.
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~--~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD--HKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHHHHhCCCCCC
Confidence 4578999999998887777776654 679999999999999999998 443 233222
Q ss_pred -eccc-------chhHHHHHHHhhccCCCCcEEEe-cC
Q 006149 597 -NHLF-------CLQLEEDVNLVLFGLSSESCIKD-NS 625 (659)
Q Consensus 597 -~~l~-------~~~f~~~~~~~Lf~~~~~g~~~~-n~ 625 (659)
+-+| -.++++.+.+.| +++|++++ |.
T Consensus 145 fD~VfiDa~k~~y~~~~~~~~~ll---~~GG~ii~dn~ 179 (234)
T PLN02781 145 FDFAFVDADKPNYVHFHEQLLKLV---KVGGIIAFDNT 179 (234)
T ss_pred CCEEEECCCHHHHHHHHHHHHHhc---CCCeEEEEEcC
Confidence 1111 145677888888 99998875 55
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.038 Score=57.76 Aligned_cols=83 Identities=22% Similarity=0.239 Sum_probs=67.5
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCCCCCe------------------eEEec
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSL------------------KVFNH 598 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl------------------~vf~~ 598 (659)
....++|=||-|.|+|..+...++ +++|++|.|+++-.+.|++=+ |+...-++ .+|+|
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvgmfEh 149 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVGMFEH 149 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehhhHHH
Confidence 445799999999999999999999 789999999999999999866 55421111 23466
Q ss_pred cc---chhHHHHHHHhhccCCCCcEEEecCc
Q 006149 599 LF---CLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 599 l~---~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
+. -..|++.+++.| +++|.+...++
T Consensus 150 vg~~~~~~ff~~~~~~L---~~~G~~llh~I 177 (283)
T COG2230 150 VGKENYDDFFKKVYALL---KPGGRMLLHSI 177 (283)
T ss_pred hCcccHHHHHHHHHhhc---CCCceEEEEEe
Confidence 63 578999999999 99999988764
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0025 Score=59.93 Aligned_cols=61 Identities=25% Similarity=0.325 Sum_probs=50.9
Q ss_pred CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 116 SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 116 ~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+.+.++|-.....+|.+++.|+|++..++.|+.-.+ ...++++++++|||||++-|.....
T Consensus 29 ~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~E-----g~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 29 PEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDE-----GTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHH-----HHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 345666655666689999999999999999997655 5789999999999999999988653
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.059 Score=55.63 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=58.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCC-CC---------eeEE-eccc---chhHHH
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQD-KS---------LKVF-NHLF---CLQLEE 606 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d-~r---------l~vf-~~l~---~~~f~~ 606 (659)
...+||-||-|.|.++..+.+..+. ++++||+||..++.|++-+....- .+ .|+. ..+. -..+..
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~~~~~l~~ 197 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILANPLLELAP 197 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHHHHHHHHH
Confidence 4579999999999999988876544 799999999999999987633211 12 2222 1111 234566
Q ss_pred HHHHhhccCCCCcEEEecC
Q 006149 607 DVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 607 ~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+.++| +++|.++...
T Consensus 198 ~~~~~L---kpgG~lilsg 213 (250)
T PRK00517 198 DLARLL---KPGGRLILSG 213 (250)
T ss_pred HHHHhc---CCCcEEEEEE
Confidence 788889 9999888764
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.049 Score=53.34 Aligned_cols=113 Identities=9% Similarity=0.084 Sum_probs=72.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CeEEEEcCCHHHH------HHHHHHhhc-CCCCcEEEEeecCCCCCCCCcccE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVI------SDMLRRNVR-DRSDMRWRVMDMTSMQFMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~-~~VtgvD~S~~~i------~~~~~~~~~-~~~~i~~~~~D~~~l~~~~~sFDv 137 (659)
+++.+|+|+=.|.|.++..++.. |. +.|++.=..+... ..+.....+ ...+...+-.+...+. +.+..|+
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~ 125 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDL 125 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccc
Confidence 68999999999999999999876 32 4577654433211 111111111 1245666666666666 5577888
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++.....+-+..-.-......++...+++.|||||.|++.++.
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 8875444332221111223779999999999999999999864
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.077 Score=53.37 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=56.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCC------C--------CCeeEE-ecccc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQ------D--------KSLKVF-NHLFC 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~------d--------~rl~vf-~~l~~ 601 (659)
...+||-||.|.|.++.+|.+..+ +.+|++||++|.+++.|++.+ |+.. | ...|+. -.-..
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCc
Confidence 346999999999999999988764 467999999999999999876 3310 0 011211 11112
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
....+.+.+.| +++|.++...
T Consensus 157 ~~~~~~~~~~L---~~gG~lv~~~ 177 (215)
T TIGR00080 157 PKIPEALIDQL---KEGGILVMPV 177 (215)
T ss_pred ccccHHHHHhc---CcCcEEEEEE
Confidence 23445677778 9999887654
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.038 Score=56.49 Aligned_cols=80 Identities=21% Similarity=0.123 Sum_probs=58.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
+..+|+|||||-=-++..+... ....++|+||+..+++....-....+...++...|...-+ +....|+.+..=++..
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTLPC 183 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-HHH
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHHHH
Confidence 4789999999988888766655 2358999999999999876666666788899999988864 4578999998777766
Q ss_pred cC
Q 006149 147 LM 148 (659)
Q Consensus 147 l~ 148 (659)
+.
T Consensus 184 le 185 (251)
T PF07091_consen 184 LE 185 (251)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.18 Score=51.84 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=58.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC------------CCCCeeEE-ec-----c-cc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVF-NH-----L-FC 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~------------~d~rl~vf-~~-----l-~~ 601 (659)
.+.+||-||.|.|.+...+... ..++++||++|.+++.|++.+.-. .+...|+. .. . ..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~ 119 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL 119 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence 4578999999999999998875 368999999999999999864210 12233443 11 1 23
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+...++++| +++|.+....
T Consensus 120 ~~~l~~~~~~L---k~gG~l~~~~ 140 (251)
T PRK10258 120 STALRELYRVV---RPGGVVAFTT 140 (251)
T ss_pred HHHHHHHHHHc---CCCeEEEEEe
Confidence 46678889999 9999887754
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.088 Score=52.21 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=55.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC------------CCCCeeEE------ecc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT------------QDKSLKVF------NHL 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~------------~d~rl~vf------~~l 599 (659)
.+.+||-||.|.|.++.++... +.+|++||++|.+++.|++.. ++. .++..|+. .++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFMFL 107 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecccccC
Confidence 4579999999999999999975 368999999999999887654 221 01233422 122
Q ss_pred c---chhHHHHHHHhhccCCCCcEE
Q 006149 600 F---CLQLEEDVNLVLFGLSSESCI 621 (659)
Q Consensus 600 ~---~~~f~~~~~~~Lf~~~~~g~~ 621 (659)
. ...+.+.++++| +|+|.+
T Consensus 108 ~~~~~~~~l~~~~~~L---kpgG~l 129 (195)
T TIGR00477 108 QAGRVPEIIANMQAHT---RPGGYN 129 (195)
T ss_pred CHHHHHHHHHHHHHHh---CCCcEE
Confidence 1 246788999999 999974
|
Part of a tellurite-reducing operon tehA and tehB |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.16 Score=50.95 Aligned_cols=134 Identities=15% Similarity=0.149 Sum_probs=93.1
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC-C
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF-M 131 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~-~ 131 (659)
.+..++.. +.++.||||--+.+...|.+.+ ...+++.|+++..++.+.+...... ++++..++|... ++ .
T Consensus 9 ~va~~V~~-----~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~ 82 (226)
T COG2384 9 TVANLVKQ-----GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLEL 82 (226)
T ss_pred HHHHHHHc-----CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccCc
Confidence 35566643 5569999999999999999885 4689999999999998877765544 578888888855 33 3
Q ss_pred CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeCCC
Q 006149 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQK 206 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~ 206 (659)
+..+|+|+..|+-..+ +...+++-...|+.=-+|++..-.++.-++.++. ..+|.+....+-.+
T Consensus 83 ~d~~d~ivIAGMGG~l---------I~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~--~~~~~I~~E~ileE 146 (226)
T COG2384 83 EDEIDVIVIAGMGGTL---------IREILEEGKEKLKGVERLILQPNIHTYELREWLS--ANSYEIKAETILEE 146 (226)
T ss_pred cCCcCEEEEeCCcHHH---------HHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHH--hCCceeeeeeeecc
Confidence 4489999876654433 5678888888887555566554443332222221 34788887776544
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.034 Score=58.27 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=62.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeEE-------------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVF------------------- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~vf------------------- 596 (659)
..+++||-||-|.|..+.++....| +-+|+.+|+||+..++|+++| |+. +++++.
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~--~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS--HKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHHhcccCCC
Confidence 4578999999999999999988765 568999999999999999999 664 344333
Q ss_pred -ecc-------cchhHHHHHHHhhccCCCCcEEEe-cC
Q 006149 597 -NHL-------FCLQLEEDVNLVLFGLSSESCIKD-NS 625 (659)
Q Consensus 597 -~~l-------~~~~f~~~~~~~Lf~~~~~g~~~~-n~ 625 (659)
+-+ --.++++.+...| +++|++++ |.
T Consensus 195 FD~VFIDa~K~~Y~~y~e~~l~lL---~~GGvIV~DNv 229 (278)
T PLN02476 195 YDFAFVDADKRMYQDYFELLLQLV---RVGGVIVMDNV 229 (278)
T ss_pred CCEEEECCCHHHHHHHHHHHHHhc---CCCcEEEEecC
Confidence 111 1255677788888 99998875 55
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.066 Score=53.15 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=57.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhh---cCCCCCCCe-------------eEEeccc---
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDY---FGFTQDKSL-------------KVFNHLF--- 600 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~---Fgl~~d~rl-------------~vf~~l~--- 600 (659)
...+||-+|.|.|.+...+.... +..++++||++|..++.|++- |++.++-.+ .-|+.++
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 34689999999999998887654 567999999999999999865 454211000 1122222
Q ss_pred ----chhHHHHHHHhhccCCCCcEEEecC
Q 006149 601 ----CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 601 ----~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
-.++.+.+.++| +++|.++...
T Consensus 120 ~~~~~~~~l~~~~~~L---kpgG~lv~~~ 145 (198)
T PRK00377 120 GSEKLKEIISASWEII---KKGGRIVIDA 145 (198)
T ss_pred CcccHHHHHHHHHHHc---CCCcEEEEEe
Confidence 255677788888 9999887644
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.077 Score=56.39 Aligned_cols=80 Identities=10% Similarity=0.071 Sum_probs=58.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-CCCCe---------------eEE--ecc--
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSL---------------KVF--NHL-- 599 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-~d~rl---------------~vf--~~l-- 599 (659)
....+||=||+|.|.++..+.+.+|+.+++++|+ |.|++.|++...-. -++|+ |++ .++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh 226 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILY 226 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhh
Confidence 3457999999999999999999999999999998 78999998764211 01222 322 121
Q ss_pred -cc----hhHHHHHHHhhccCCCCcEEEe
Q 006149 600 -FC----LQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 600 -~~----~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+. ....+.+.++| +|+|.+.+
T Consensus 227 ~~~~~~~~~il~~~~~~L---~pgG~l~i 252 (306)
T TIGR02716 227 SANEQLSTIMCKKAFDAM---RSGGRLLI 252 (306)
T ss_pred cCChHHHHHHHHHHHHhc---CCCCEEEE
Confidence 11 34677889999 99997644
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.15 Score=55.80 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=66.6
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC----------------CCCCeeEE-----ec
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT----------------QDKSLKVF-----NH 598 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~----------------~d~rl~vf-----~~ 598 (659)
.+||=||.|.|.+...+.+.+|..+|++||+++.+++.|++-+ +.. ++.+.|+. .|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh 309 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFH 309 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCcc
Confidence 5899999999999999999999999999999999999999644 111 01133332 01
Q ss_pred ----c---cchhHHHHHHHhhccCCCCcEE--EecCchHHHHHHHhhcc
Q 006149 599 ----L---FCLQLEEDVNLVLFGLSSESCI--KDNSFPEAAVQLGKLVK 638 (659)
Q Consensus 599 ----l---~~~~f~~~~~~~Lf~~~~~g~~--~~n~~~~~~~~l~~~~~ 638 (659)
+ ....++.+++++| +++|.+ +.|.+-.....|+++..
T Consensus 310 ~~~~~~~~ia~~l~~~a~~~L---kpGG~L~iV~nr~l~y~~~L~~~fg 355 (378)
T PRK15001 310 QQHALTDNVAWEMFHHARRCL---KINGELYIVANRHLDYFHKLKKIFG 355 (378)
T ss_pred cCccCCHHHHHHHHHHHHHhc---ccCCEEEEEEecCcCHHHHHHHHcC
Confidence 1 1346788889999 999954 45665444455665543
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.064 Score=55.31 Aligned_cols=81 Identities=11% Similarity=0.079 Sum_probs=61.9
Q ss_pred CCCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhc---CCCCCCCeeEE-------------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVF------------------- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~vf------------------- 596 (659)
-.+++||-||-+.|--+.++.... ++.+++.+|+||+..++|+++| |+. +++++.
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~--~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA--HKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CceEEEeccHHHHHHHHHhccccCC
Confidence 467899999999988888887765 4679999999999999999999 543 344322
Q ss_pred --e-------cccchhHHHHHHHhhccCCCCcEEEe-cC
Q 006149 597 --N-------HLFCLQLEEDVNLVLFGLSSESCIKD-NS 625 (659)
Q Consensus 597 --~-------~l~~~~f~~~~~~~Lf~~~~~g~~~~-n~ 625 (659)
+ .-....+++.+...| +++|++++ |.
T Consensus 156 ~fD~iFiDadK~~Y~~y~~~~l~ll---~~GGviv~DNv 191 (247)
T PLN02589 156 TFDFIFVDADKDNYINYHKRLIDLV---KVGGVIGYDNT 191 (247)
T ss_pred cccEEEecCCHHHhHHHHHHHHHhc---CCCeEEEEcCC
Confidence 1 112456778888899 99998875 55
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.2 Score=51.11 Aligned_cols=103 Identities=19% Similarity=0.133 Sum_probs=62.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC---CCcccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM---DETFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~---~~sFDvVi~~g~ 143 (659)
.+.+||-+|=+.- .+..++-. ...+|+.+|+.+..++...+.+.+.+-.++.+..|+.+ |+| .++||+++.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~-~LP~~~~~~fD~f~T--- 118 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD-PLPEELRGKFDVFFT--- 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc-cCCHHHhcCCCEEEe---
Confidence 5789999995543 33334333 34699999999999998877777667679999999988 333 379999994
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+|......+.-++.+....||..|......++
T Consensus 119 -----DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 119 -----DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFT 150 (243)
T ss_dssp --------SSHHHHHHHHHHHHHTB-STT-EEEEEE-
T ss_pred -----CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 34434456889999999999977754455554
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.075 Score=54.53 Aligned_cols=86 Identities=10% Similarity=0.029 Sum_probs=61.8
Q ss_pred HHHhhCCCCCCCCC--eEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC------C----CCcEEEEee
Q 006149 57 LISLIGAPTSSPPP--QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------R----SDMRWRVMD 124 (659)
Q Consensus 57 l~~~l~~~~~~~~~--~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~------~----~~i~~~~~D 124 (659)
+.+.+.. +++. +|||+-+|.|..+..++..|. .|+++|-++.+...+....... . .+++++++|
T Consensus 78 l~kAvgl---k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 78 VAKAVGI---KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHhCC---CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4555543 3444 999999999999999999998 5999999998877655443331 1 358888888
Q ss_pred cCCC-CCCCCcccEEEecccccc
Q 006149 125 MTSM-QFMDETFDVILDKGGLDA 146 (659)
Q Consensus 125 ~~~l-~~~~~sFDvVi~~g~l~~ 146 (659)
..+. .-...+||+|+.-..+.+
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 7765 212347999996655544
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.11 Score=54.00 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=42.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
.+.+||=+|.|.|.+...+...+|..+++++|+++..++.|++.+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999998764
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.18 Score=50.14 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=59.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCC-ccEEEEecChhHHHHHHhhcCCCC---------------CCCeeEE------ec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQ---------------DKSLKVF------NH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~-~~i~~VEiDp~V~~vA~~~Fgl~~---------------d~rl~vf------~~ 598 (659)
.+.+||-+|.|.|.+...+.+.+|. .+++++|+++.+++.+++.+.... ++..|+. .+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 4579999999999999998888886 799999999999999998775211 1122322 11
Q ss_pred c-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 599 L-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 599 l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+ ....+.+.+.+.| +++|.++.
T Consensus 119 ~~~~~~~l~~~~~~L---~~gG~l~~ 141 (223)
T TIGR01934 119 VTDIQKALREMYRVL---KPGGRLVI 141 (223)
T ss_pred cccHHHHHHHHHHHc---CCCcEEEE
Confidence 1 2356678888889 99997764
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.041 Score=55.08 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=42.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
+.+.+||-||-|.|.+...|...+|..++++||++|.+++.|++.+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC
Confidence 4457899999999999999999888889999999999999999875
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.029 Score=62.33 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=53.8
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (659)
.+.+++.. ..+..+||+-||||.++..+++. ...|+||++++.+++.|...+..++ .+.+|+++-++++
T Consensus 374 ~i~e~~~l---~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 374 TIGEWAGL---PADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHhCC---CCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 34444443 56789999999999999999765 5699999999999998866655554 6899999955553
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.12 Score=52.15 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=59.5
Q ss_pred CCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhcCCC-CCCC-----------------eeEE------
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKS-----------------LKVF------ 596 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~Fgl~-~d~r-----------------l~vf------ 596 (659)
..+||-||.|.|.+...+...+| +.++++||+++.+++.|++.+.-. .+.+ .|+.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 46999999999999999999887 689999999999999999987431 0111 1221
Q ss_pred ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++ ....+++.+.++| +++|.+..
T Consensus 132 ~~~~~~~~~l~~~~~~L---~~gG~li~ 156 (239)
T PRK00216 132 RNVPDIDKALREMYRVL---KPGGRLVI 156 (239)
T ss_pred ccCCCHHHHHHHHHHhc---cCCcEEEE
Confidence 111 2456778888889 99997654
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.13 Score=55.60 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=65.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC--------------CCCCeeEE--e---c--c-
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--------------QDKSLKVF--N---H--L- 599 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~--------------~d~rl~vf--~---~--l- 599 (659)
..+||=||.|.|.+...+.+.+|..++++||+++.+++.|++-+... .+.+.|+. + | +
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~ 276 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQ 276 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCcc
Confidence 35899999999999999999999999999999999999998754211 01233332 1 1 1
Q ss_pred ----cchhHHHHHHHhhccCCCCcEE--EecCchHHHHHHH
Q 006149 600 ----FCLQLEEDVNLVLFGLSSESCI--KDNSFPEAAVQLG 634 (659)
Q Consensus 600 ----~~~~f~~~~~~~Lf~~~~~g~~--~~n~~~~~~~~l~ 634 (659)
....|...+.+.| +++|.+ +.|.+-.-...|+
T Consensus 277 ~~~~~~~~~i~~a~~~L---kpgG~L~iVan~~l~y~~~l~ 314 (342)
T PRK09489 277 TSLDAAQTLIRGAVRHL---NSGGELRIVANAFLPYPDLLD 314 (342)
T ss_pred ccHHHHHHHHHHHHHhc---CcCCEEEEEEeCCCChHHHHH
Confidence 1367888899999 999955 6787543333333
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.13 Score=59.67 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=39.6
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhh
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~ 584 (659)
+.+||=||.|.|.+...+...+|+.++++||+++.+++.|++-
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Arar 461 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKK 461 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 4699999999999999998889999999999999999999864
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.087 Score=54.93 Aligned_cols=44 Identities=36% Similarity=0.517 Sum_probs=38.2
Q ss_pred CCCCeEEEEccCcc----hHHHHHHhhCC-----CccEEEEecChhHHHHHHh
Q 006149 540 GKSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 540 ~~~~~vLiiGlGgG----~l~~~l~~~~p-----~~~i~~VEiDp~V~~vA~~ 583 (659)
+.+.+|+.+|.|.| +|++.|...++ +.+|+++|||+.+++.|++
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 45679999999999 58888888765 4799999999999999997
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.098 Score=52.86 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC---CCCCcccEE
Q 006149 64 PTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---FMDETFDVI 138 (659)
Q Consensus 64 ~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~---~~~~sFDvV 138 (659)
...+|+.+||-+|+++|....+..+. | ..-|++|++|.-.=..+... +..++||-.+.-|+.... +.-+..|+|
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nm-AkkRtNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINM-AKKRTNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHH-hhccCCceeeeccCCCchheeeeeeeEEEE
Confidence 44578999999999999998888886 3 35799999998655544333 356688988999987631 223456777
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++. +.. +....-+.-+....||+||.|++..-+
T Consensus 231 FaD-----vaq----pdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 231 FAD-----VAQ----PDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred ecc-----CCC----chhhhhhhhhhhhhhccCCeEEEEEec
Confidence 642 111 223455566788899999999987643
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.063 Score=53.86 Aligned_cols=81 Identities=21% Similarity=0.211 Sum_probs=58.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCe------------------eEE-----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSL------------------KVF----- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl------------------~vf----- 596 (659)
....++|=+|.|-|-..+-|.-..- -+|++||..+..++.|++|++-. ..++ |++
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 3567999999999999986654442 48999999999999999998761 2232 444
Q ss_pred -eccc---chhHHHHHHHhhccCCCCcEEEe--cC
Q 006149 597 -NHLF---CLQLEEDVNLVLFGLSSESCIKD--NS 625 (659)
Q Consensus 597 -~~l~---~~~f~~~~~~~Lf~~~~~g~~~~--n~ 625 (659)
-||. -.+|+..|+..| +|+|+++. |+
T Consensus 132 lghLTD~dlv~fL~RCk~~L---~~~G~IvvKEN~ 163 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQAL---KPNGVIVVKENV 163 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHE---EEEEEEEEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhC---cCCcEEEEEecC
Confidence 4664 567888999999 99998866 65
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.2 Score=52.96 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=49.7
Q ss_pred HHHHhhCCCC--CCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcC---CCCcEEEEeecCC-
Q 006149 56 PLISLIGAPT--SSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD---RSDMRWRVMDMTS- 127 (659)
Q Consensus 56 ~l~~~l~~~~--~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~---~~~i~~~~~D~~~- 127 (659)
.+..++.... .....++||||||.+..--.|... |. +++|+|+++..++.|++....+ ..+|+++...-..
T Consensus 88 ~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~ 166 (299)
T PF05971_consen 88 WIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDN 166 (299)
T ss_dssp HHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-S
T ss_pred HHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccc
Confidence 4555555411 112468999999999775444433 66 9999999999999998776555 2567776553221
Q ss_pred ----CCCCCCcccEEEecccccccC
Q 006149 128 ----MQFMDETFDVILDKGGLDALM 148 (659)
Q Consensus 128 ----l~~~~~sFDvVi~~g~l~~l~ 148 (659)
+.-+++.||+.+|+..++.-.
T Consensus 167 i~~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 167 IFDGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp STTTSTT--S-EEEEEE-----SS-
T ss_pred cchhhhcccceeeEEecCCccccCh
Confidence 112346899999999998754
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.13 Score=53.60 Aligned_cols=80 Identities=19% Similarity=0.159 Sum_probs=57.0
Q ss_pred CCCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhc---CCC--------------CCCCeeEE-e----
Q 006149 541 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFT--------------QDKSLKVF-N---- 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~d~rl~vf-~---- 597 (659)
...+||.||.|+|.+...+... .+..+|++||+++.+++.|++.+ ++. ++...|+. .
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI 156 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence 4569999999999877766654 45568999999999999999863 331 11223322 1
Q ss_pred -cc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 598 -HL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 -~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
++ -....++.+.++| +++|.++.
T Consensus 157 ~~~~d~~~~l~~~~r~L---kpGG~l~i 181 (272)
T PRK11873 157 NLSPDKERVFKEAFRVL---KPGGRFAI 181 (272)
T ss_pred cCCCCHHHHHHHHHHHc---CCCcEEEE
Confidence 11 1246788999999 99998866
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.017 Score=54.95 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=77.2
Q ss_pred CCCCeEEEECCCcchHHHHH-HHc-CCCeEEEEcCCHHHHHHHHHHhhcC----CCCcEEEEeecCCC--CCCCCcccEE
Q 006149 67 SPPPQILVPGCGNSRLSEHL-YDA-GFHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSM--QFMDETFDVI 138 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~L-a~~-g~~~VtgvD~S~~~i~~~~~~~~~~----~~~i~~~~~D~~~l--~~~~~sFDvV 138 (659)
..+.+||++|.|--.++-.| |.. ....|...|-++..++...+....+ ..++..+..+...- ......||+|
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 34679999999976665444 333 4468999999999998775543222 12222222222111 2334689999
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhc
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFR 193 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~ 193 (659)
++..++..- . ..+.+.+-++++|+|.|..++..+....-++.+..+..
T Consensus 108 laADClFfd--E-----~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~ 155 (201)
T KOG3201|consen 108 LAADCLFFD--E-----HHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVG 155 (201)
T ss_pred EeccchhHH--H-----HHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHH
Confidence 988776641 1 25688999999999999988877654444444444443
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.038 Score=56.66 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=59.4
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC--CC----Ce--------------e------EE
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ--DK----SL--------------K------VF 596 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~--d~----rl--------------~------vf 596 (659)
++||=+|-|||.|..-|.+.. ..|++||+.+.++++|+++=...+ +- |+ | |.
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevl 168 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVL 168 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHH
Confidence 579999999999999999986 689999999999999999943321 11 12 1 22
Q ss_pred ecc-cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 597 NHL-FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 597 ~~l-~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+|+ .-.+|.+.+-+.| +|+|.+..-.
T Consensus 169 eHV~dp~~~l~~l~~~l---kP~G~lfitt 195 (282)
T KOG1270|consen 169 EHVKDPQEFLNCLSALL---KPNGRLFITT 195 (282)
T ss_pred HHHhCHHHHHHHHHHHh---CCCCceEeee
Confidence 455 3566777778888 9999776644
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.029 Score=55.94 Aligned_cols=100 Identities=9% Similarity=0.026 Sum_probs=55.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc-----CCCeEEEEcCCHHHHHHHHHHhhc--CCCCcEEEEeecCCCC----C----CC
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-----GFHGITNVDFSKVVISDMLRRNVR--DRSDMRWRVMDMTSMQ----F----MD 132 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-----g~~~VtgvD~S~~~i~~~~~~~~~--~~~~i~~~~~D~~~l~----~----~~ 132 (659)
+++.|+|+|.-+|..+..+|+. +.++|++||+.-..... ..... -.++|+++++|..+.. . ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 4689999999999988777653 34799999995422211 11111 1378999999988752 1 12
Q ss_pred CcccEEEeccc--ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 133 ETFDVILDKGG--LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 133 ~sFDvVi~~g~--l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
....+|+.-+. -.| +.+.|+....++++|+++|+-+.
T Consensus 110 ~~~vlVilDs~H~~~h----------vl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 110 PHPVLVILDSSHTHEH----------VLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp -SSEEEEESS----SS----------HHHHHHHHHHT--TT-EEEETSH
T ss_pred CCceEEEECCCccHHH----------HHHHHHHhCccCCCCCEEEEEec
Confidence 23446654222 122 45778889999999999998764
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.25 Score=49.31 Aligned_cols=81 Identities=11% Similarity=0.035 Sum_probs=56.4
Q ss_pred CCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhcCCC-CCCCe-----------------eE-Eecccc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSL-----------------KV-FNHLFC 601 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~Fgl~-~d~rl-----------------~v-f~~l~~ 601 (659)
..+||-||.|.|.++..+.+..+ ..++++||++|.+++.|++.+.-. -+.++ |+ +.....
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCc
Confidence 36899999999999999888764 458999999999999998765211 01112 21 111122
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+.+.+.+.| +++|.++...
T Consensus 153 ~~~~~~l~~~L---~~gG~lvi~~ 173 (205)
T PRK13944 153 STIPSALVRQL---KDGGVLVIPV 173 (205)
T ss_pred chhhHHHHHhc---CcCcEEEEEE
Confidence 34556778888 9999887643
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.18 Score=51.71 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=63.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC----------------C-CCCCeeEE------e
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----------------T-QDKSLKVF------N 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl----------------~-~d~rl~vf------~ 597 (659)
.+.+||=||.|.|-++..+.+..+..+|+++|+.+.|+++|++-..- | +|.-.|+. .
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 56899999999999999999999999999999999999999987742 1 22223333 1
Q ss_pred cc-cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 HL-FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l-~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
++ .-......++||| +|+|.+++.-
T Consensus 131 nv~d~~~aL~E~~RVl---KpgG~~~vle 156 (238)
T COG2226 131 NVTDIDKALKEMYRVL---KPGGRLLVLE 156 (238)
T ss_pred cCCCHHHHHHHHHHhh---cCCeEEEEEE
Confidence 22 2456678899999 9999666533
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.058 Score=47.17 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=34.6
Q ss_pred EEEEccCcchHHHHHHhhC---CCccEEEEecChhHHHHHHhhcC
Q 006149 545 AVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 545 vLiiGlGgG~l~~~l~~~~---p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
||=||-|.|...+.+.+.+ |..++++||+|+.+++.|++.+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~ 45 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS 45 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch
Confidence 6789999999999999987 55799999999999999999983
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.16 Score=55.85 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=60.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-CC-----C-----CCCeeEE------ecccc--
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FT-----Q-----DKSLKVF------NHLFC-- 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-l~-----~-----d~rl~vf------~~l~~-- 601 (659)
...+||-||.|.|.++.++.+.+ +.+|++||+++..++.|++-.. +. . +...|+. +|+-.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~~~ 245 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGPKN 245 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCChHH
Confidence 34699999999999999998876 4699999999999999987542 11 0 1223322 33321
Q ss_pred -hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 -LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 -~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+++.+.++| +|+|.++...
T Consensus 246 ~~~~l~~i~r~L---kpGG~lvl~~ 267 (383)
T PRK11705 246 YRTYFEVVRRCL---KPDGLFLLHT 267 (383)
T ss_pred HHHHHHHHHHHc---CCCcEEEEEE
Confidence 46888999999 9999887754
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.099 Score=52.20 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=63.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-----------CCCeeEE------ecc-cc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-----------DKSLKVF------NHL-FC 601 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-----------d~rl~vf------~~l-~~ 601 (659)
..+.+|.=||.|-|-....|++.+|.+.|+++|-+|+|++-|++-..-.. ..-.+++ ..| ..
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaNAvlqWlpdH 108 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFANAVLQWLPDH 108 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhhhhhhhcccc
Confidence 46789999999999999999999999999999999999999988763221 1112322 233 24
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+.+..+-..| .|+|+++++.
T Consensus 109 ~~ll~rL~~~L---~Pgg~LAVQm 129 (257)
T COG4106 109 PELLPRLVSQL---APGGVLAVQM 129 (257)
T ss_pred HHHHHHHHHhh---CCCceEEEEC
Confidence 45556666677 9999999865
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.11 Score=55.17 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=73.9
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcC-CC-----CcEEE
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD-RS-----DMRWR 121 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~-~~-----~i~~~ 121 (659)
|..+...|.++-...+.-...+|||+|.|.|.-...+.+. ...+++-++.|+..-+.. ....++ .+ +..-+
T Consensus 95 Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~-~tl~~nv~t~~td~r~s~v 173 (484)
T COG5459 95 YASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVG-DTLAENVSTEKTDWRASDV 173 (484)
T ss_pred HHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHH-HHHHhhcccccCCCCCCcc
Confidence 4444444544443333345678999999999887766654 225677788887443322 222221 11 11223
Q ss_pred EeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 122 VMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 122 ~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
..|-..+|. ...|++|+.. +-+.....+ .-+..+++.+..++.|||.+++++.+.+-
T Consensus 174 t~dRl~lp~-ad~ytl~i~~---~eLl~d~~e-k~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 174 TEDRLSLPA-ADLYTLAIVL---DELLPDGNE-KPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred chhccCCCc-cceeehhhhh---hhhccccCc-chHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 334333443 3567777744 333322211 11445899999999999999999987553
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.064 Score=53.77 Aligned_cols=140 Identities=25% Similarity=0.272 Sum_probs=89.7
Q ss_pred CCeEEEECCCcchHHHHHHHc--------CC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------C
Q 006149 69 PPQILVPGCGNSRLSEHLYDA--------GF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------F 130 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~--------g~--~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~ 130 (659)
-.+++|+....|.++..|.+. +. ..|++||+-+ | ..-+.+..+++|++... |
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----M-----aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----M-----APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----C-----CccCceEEeecccCCHhHHHHHHHHh
Confidence 469999999999999888764 11 1399999876 3 23467899999999863 6
Q ss_pred CCCcccEEEecccccccCCcccc----hHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeCCC
Q 006149 131 MDETFDVILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQK 206 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~----~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~ 206 (659)
..++-|+|+|-|+-+...--+-+ ..++..+|+-...+|||||.|+.-.+..... ..+...++.++.--...-+ .
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~t-slLysql~~ff~kv~~~KP-r 189 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDT-SLLYSQLRKFFKKVTCAKP-R 189 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCch-HHHHHHHHHHhhceeeecC-C
Confidence 67799999998876643221111 1236778888899999999999766543221 1233333333332222222 3
Q ss_pred CCCCCCCccEEEEEE
Q 006149 207 SSSEPSLQTFMVVAD 221 (659)
Q Consensus 207 ~~~~~~l~~f~~v~~ 221 (659)
+.+.+.++.|.+ |.
T Consensus 190 sSR~sSiEaFvv-C~ 203 (294)
T KOG1099|consen 190 SSRNSSIEAFVV-CL 203 (294)
T ss_pred ccccccceeeee-ec
Confidence 334455666654 53
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.31 Score=49.57 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=44.7
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT 588 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~ 588 (659)
-.++.+|=||--.|.|.-.++.+|....|.+|||||..+..|+++-.++
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 4678899999999999999999998889999999999999999987554
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.21 Score=54.03 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=59.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC--------------CCCCeeEE------ecc-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--------------QDKSLKVF------NHL- 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~--------------~d~rl~vf------~~l- 599 (659)
...+||-||.|.|.+...+.+.++..++++||+++.+++.|++.+... ++...|+. .++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 346899999999999988888888789999999999999999876421 11223432 111
Q ss_pred cchhHHHHHHHhhccCCCCcEEEe
Q 006149 600 FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
......+.+.++| +++|.++.
T Consensus 193 d~~~~L~e~~rvL---kPGG~LvI 213 (340)
T PLN02490 193 DPQRGIKEAYRVL---KIGGKACL 213 (340)
T ss_pred CHHHHHHHHHHhc---CCCcEEEE
Confidence 1245678899999 99998754
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.13 Score=53.55 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=85.6
Q ss_pred CCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC--CCCCCcccE
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM--QFMDETFDV 137 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l--~~~~~sFDv 137 (659)
....+++|.||-|.|......+.+ ...+++-+|+.+.+++.-++-... .++++..+.+|...+ ....++||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 345789999999999999888887 457899999999988866543322 237899999987765 344689999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 192 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~ 192 (659)
|+.... +-+++ ....-.+.++..+.+.||+||+.++..-+ -|+...++.+.
T Consensus 199 ii~dss-dpvgp--a~~lf~~~~~~~v~~aLk~dgv~~~q~ec-~wl~~~~i~e~ 249 (337)
T KOG1562|consen 199 IITDSS-DPVGP--ACALFQKPYFGLVLDALKGDGVVCTQGEC-MWLHLDYIKEG 249 (337)
T ss_pred EEEecC-Cccch--HHHHHHHHHHHHHHHhhCCCcEEEEecce-ehHHHHHHHHH
Confidence 995321 11110 01112678999999999999999887633 34444444443
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.084 Score=49.84 Aligned_cols=84 Identities=19% Similarity=0.261 Sum_probs=61.4
Q ss_pred CCCeEEEEccCcchHHHHHH-hhCCCccEEEEecChhHHHHHHhhc---CCC---------CC------CCeeEE-----
Q 006149 541 KSVKAVVIGLGAGLLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYF---GFT---------QD------KSLKVF----- 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~-~~~p~~~i~~VEiDp~V~~vA~~~F---gl~---------~d------~rl~vf----- 596 (659)
...+||=||.|.|.+...+. ...|..++++||+++.+++.|++.+ +++ .+ ...|+.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 35799999999999999999 5678899999999999999999953 443 01 123333
Q ss_pred -eccc-chhHHHHHHHhhccCCCCcEEEecCch
Q 006149 597 -NHLF-CLQLEEDVNLVLFGLSSESCIKDNSFP 627 (659)
Q Consensus 597 -~~l~-~~~f~~~~~~~Lf~~~~~g~~~~n~~~ 627 (659)
.++. ...+++.+.+.| +++|++....+.
T Consensus 83 l~~~~~~~~~l~~~~~~l---k~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHFPDPEKVLKNIIRLL---KPGGILIISDPN 112 (152)
T ss_dssp GGGTSHHHHHHHHHHHHE---EEEEEEEEEEEE
T ss_pred hhhccCHHHHHHHHHHHc---CCCcEEEEEECC
Confidence 1222 335778889999 999988765533
|
... |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.12 Score=57.66 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=79.5
Q ss_pred CCeEEEECCCcchHHHHHHHc---C--CCeEEEEcCCHHHHHHHHHHhhc-CCCCcEEEEeecCCCCCCCCcccEEEecc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA---G--FHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~---g--~~~VtgvD~S~~~i~~~~~~~~~-~~~~i~~~~~D~~~l~~~~~sFDvVi~~g 142 (659)
...|+.+|.|-|-+.....+. . .-++++|+-++.++-.+..++.. ...+++.+..||+..+.+.++.|++++.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 457889999999886544332 1 24789999999998766554433 3468999999999998556889998864
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.|..+.+.+.. ...|.-+.++|||+|+.|=..+.
T Consensus 447 LLGSFGDNELS----PECLDG~q~fLkpdgIsIP~sYt 480 (649)
T KOG0822|consen 447 LLGSFGDNELS----PECLDGAQKFLKPDGISIPSSYT 480 (649)
T ss_pred hhccccCccCC----HHHHHHHHhhcCCCceEccchhh
Confidence 45555655533 47899999999999988865554
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.3 Score=51.51 Aligned_cols=80 Identities=11% Similarity=0.190 Sum_probs=57.4
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-CC---------------CeeEE-eccc---c
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DK---------------SLKVF-NHLF---C 601 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-d~---------------rl~vf-~~l~---~ 601 (659)
..+||-+|.|.|.++..+.+.. ..++++||+||..++.|++.+.... .. ..|+. ..+. -
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~l 238 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEVI 238 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHHH
Confidence 4799999999999998888754 3489999999999999998763221 11 11222 1111 1
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+...+.++| +++|.+..-.
T Consensus 239 ~~ll~~~~~~L---kpgG~li~sg 259 (288)
T TIGR00406 239 KELYPQFSRLV---KPGGWLILSG 259 (288)
T ss_pred HHHHHHHHHHc---CCCcEEEEEe
Confidence 35777888899 9999887754
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.19 Score=48.41 Aligned_cols=50 Identities=26% Similarity=0.303 Sum_probs=41.8
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeE
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~v 595 (659)
..+||=||.|.|.+...+... ..++++||+|+.+++.+++.+.- .+++++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~i 63 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTV 63 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEE
Confidence 358999999999999999987 36899999999999999998853 334543
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.21 Score=48.57 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=38.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+.+||-+|.|.|.+...+....+ ++++||++|.+++.|++.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~ 61 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENA 61 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHH
Confidence 346899999999999999998876 8999999999999999865
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.12 Score=53.48 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=44.2
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
..+|+-||-|-|+|.+.|.... .++++||||+.++.+-++.|. .-+++.++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi 81 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFA--PYDNLTVI 81 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcc--cccceEEE
Confidence 4689999999999999999987 369999999999999999998 34566665
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.37 Score=52.90 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=67.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC----------------CCCee-EEe---
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ----------------DKSLK-VFN--- 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~----------------d~rl~-vf~--- 597 (659)
..+.+|=||.|.|.....+....|+..+.+|||++.+++.|.+-. |+.. +..++ ++-
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 346899999999999999999999999999999999988887665 3211 11111 111
Q ss_pred ---------cccchhHHHHHHHhhccCCCCcEEEecC--chHHHHHHHhhcc
Q 006149 598 ---------HLFCLQLEEDVNLVLFGLSSESCIKDNS--FPEAAVQLGKLVK 638 (659)
Q Consensus 598 ---------~l~~~~f~~~~~~~Lf~~~~~g~~~~n~--~~~~~~~l~~~~~ 638 (659)
.|....|.+.+.++| +++|.+...+ .......++.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvL---kpGG~l~l~TD~~~y~~~~~e~~~~ 250 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVL---KPGGTLELRTDSELYFEFSLELFLK 250 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHc---CCCcEEEEEEECHHHHHHHHHHHHh
Confidence 133468999999999 9999776644 3444444444444
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.13 Score=47.91 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=36.3
Q ss_pred CCCCeEEEEccCcc-hHHHHHHhhCCCccEEEEecChhHHHHHHhh
Q 006149 540 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 540 ~~~~~vLiiGlGgG-~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~ 584 (659)
.+..++|+||+|-| .++..|.+. +.+|++||+||..++-|++.
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh
Confidence 34578999999977 599999975 36999999999999988775
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.44 Score=51.48 Aligned_cols=117 Identities=14% Similarity=0.051 Sum_probs=62.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc------------C-----CCeEEEEcCCHHHHHHHHHHhhc------CCCCc--EEE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA------------G-----FHGITNVDFSKVVISDMLRRNVR------DRSDM--RWR 121 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~------------g-----~~~VtgvD~S~~~i~~~~~~~~~------~~~~i--~~~ 121 (659)
...-+|+|+||..|..+..+... + .-+|.--|.-..=...+.+.... ..+++ .-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 35679999999999999777542 1 01566666433221111111100 11222 223
Q ss_pred EeecCCCCCCCCcccEEEecccccccCCcccc---------------------h-----------HHHHHHHHHHHhccc
Q 006149 122 VMDMTSMQFMDETFDVILDKGGLDALMEPELG---------------------H-----------KLGNQYLSEVKRLLK 169 (659)
Q Consensus 122 ~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~---------------------~-----------~~~~~~l~ei~rvLk 169 (659)
-+.+..--||+++.|++++..++||+.....+ + .++..+|+.=.+-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 34555445889999999999999998642100 0 125555666667789
Q ss_pred cCeEEEEEEcCCch
Q 006149 170 SGGKFVCLTLAESH 183 (659)
Q Consensus 170 pGG~lvi~~~~~~~ 183 (659)
|||++++..++.+.
T Consensus 175 ~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 175 PGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEE-ST
T ss_pred cCcEEEEEEeeccc
Confidence 99999999887554
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.3 Score=48.75 Aligned_cols=86 Identities=17% Similarity=0.306 Sum_probs=65.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCe------------------------eEE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSL------------------------KVF 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl------------------------~vf 596 (659)
+..|||-||.|-|....|+.+.-|. +-..+|-.|.|.+--|+|=--. -+++ |.|
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccccccCcceeEeech
Confidence 4579999999999999999999887 8899999999999888774322 2222 223
Q ss_pred eccc--chhHHHHHHHhhccCCCCcEEEe-cCchHHHH
Q 006149 597 NHLF--CLQLEEDVNLVLFGLSSESCIKD-NSFPEAAV 631 (659)
Q Consensus 597 ~~l~--~~~f~~~~~~~Lf~~~~~g~~~~-n~~~~~~~ 631 (659)
..++ +.+|++.+-+.| +|+|++.. |.++....
T Consensus 179 ~e~yEdl~~~hqh~~rLL---kP~gv~SyfNg~~~~~~ 213 (271)
T KOG1709|consen 179 SELYEDLRHFHQHVVRLL---KPEGVFSYFNGLGADNL 213 (271)
T ss_pred hhHHHHHHHHHHHHhhhc---CCCceEEEecCcccchh
Confidence 3333 678888899999 99999976 87654433
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.13 Score=52.71 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=53.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhcC----------------CC-CCCCeeEE-----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFG----------------FT-QDKSLKVF----- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~Fg----------------l~-~d~rl~vf----- 596 (659)
..+.+||=+|.|.|.+...|.+.. |+.+|++||+.+.++++|++-.. +| +|+..|+.
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 345699999999999999888764 67899999999999999997531 11 23333433
Q ss_pred -ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 -NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 -~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
..+ .-....++++++| +|+|.+++
T Consensus 126 lrn~~d~~~~l~E~~RVL---kPGG~l~i 151 (233)
T PF01209_consen 126 LRNFPDRERALREMYRVL---KPGGRLVI 151 (233)
T ss_dssp GGG-SSHHHHHHHHHHHE---EEEEEEEE
T ss_pred HHhhCCHHHHHHHHHHHc---CCCeEEEE
Confidence 112 2356778999999 99997655
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.9 Score=45.48 Aligned_cols=123 Identities=11% Similarity=0.009 Sum_probs=68.9
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc---CCCeEEEEcCCHHHHHHHHHHhh--------------------
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNV-------------------- 112 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~---g~~~VtgvD~S~~~i~~~~~~~~-------------------- 112 (659)
++...+.......+-++-|..||.|.+.-.+.-. ...+|++.|+++.+++-+.+...
T Consensus 39 i~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~ 118 (246)
T PF11599_consen 39 IFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQ 118 (246)
T ss_dssp HHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHH
Confidence 4444444433356679999999999987555432 34789999999999987755422
Q ss_pred ---------------------cC--CCCcEEEEeecCCCC-----CCCCcccEEEecccccccCCccc--chHHHHHHHH
Q 006149 113 ---------------------RD--RSDMRWRVMDMTSMQ-----FMDETFDVILDKGGLDALMEPEL--GHKLGNQYLS 162 (659)
Q Consensus 113 ---------------------~~--~~~i~~~~~D~~~l~-----~~~~sFDvVi~~g~l~~l~~~~~--~~~~~~~~l~ 162 (659)
.. .......+.|+++.. -.....|+|+.--....+.+.+. +......+|+
T Consensus 119 ~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~ 198 (246)
T PF11599_consen 119 YGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLN 198 (246)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHH
Confidence 11 123557788888731 11234699997655555444332 2234889999
Q ss_pred HHHhccccCeEEEEEE
Q 006149 163 EVKRLLKSGGKFVCLT 178 (659)
Q Consensus 163 ei~rvLkpGG~lvi~~ 178 (659)
.++.+|-.++++++++
T Consensus 199 ~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 199 SLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHCCS-TT-EEEEEE
T ss_pred HHHhhCCCCcEEEEec
Confidence 9999995555555533
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.60 E-value=1.2 Score=50.82 Aligned_cols=194 Identities=13% Similarity=0.100 Sum_probs=107.2
Q ss_pred hHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc----C-CCeEEEEcCCHHHH
Q 006149 30 NWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVI 104 (659)
Q Consensus 30 yWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~----g-~~~VtgvD~S~~~i 104 (659)
|--..|+... +....-|....++...+.+++.. .+..+|.|..||+|.+....++. . ...++|.++.+...
T Consensus 152 ~ll~~fa~~~-~k~~GEfyTP~~v~~liv~~l~~---~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~ 227 (489)
T COG0286 152 YLLRKFAEAE-GKEAGEFYTPREVSELIVELLDP---EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTY 227 (489)
T ss_pred HHHHHHHHhc-CCCCCccCChHHHHHHHHHHcCC---CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHH
Confidence 4444455442 33323334456777778888764 56679999999999887665543 1 24689999998877
Q ss_pred HHHHHHhhcCCC--CcEEEEeecCCCCC-----CCCcccEEEeccccccc--CCcc-----------cc-----hHHHHH
Q 006149 105 SDMLRRNVRDRS--DMRWRVMDMTSMQF-----MDETFDVILDKGGLDAL--MEPE-----------LG-----HKLGNQ 159 (659)
Q Consensus 105 ~~~~~~~~~~~~--~i~~~~~D~~~l~~-----~~~sFDvVi~~g~l~~l--~~~~-----------~~-----~~~~~~ 159 (659)
.-++-...-++- .+....+|-..-|. ..+.||+|+++..+... .... .+ ...-..
T Consensus 228 ~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 307 (489)
T COG0286 228 RLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLA 307 (489)
T ss_pred HHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHH
Confidence 655444332332 24455555444432 33679999987655311 1000 00 011378
Q ss_pred HHHHHHhccccCeEEEEEEcCCchhhc----chhhhhcc-CceEEEeeeCCCCCCCCCCccEEEEEEecCCcc
Q 006149 160 YLSEVKRLLKSGGKFVCLTLAESHVLG----LLFPKFRF-GWKMSVHAIPQKSSSEPSLQTFMVVADKENSSV 227 (659)
Q Consensus 160 ~l~ei~rvLkpGG~lvi~~~~~~~~~~----~l~~~~~~-~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~~~ 227 (659)
.++++...|+|||+..++.+..-.++. .+...... ...-.+-.++..--.....+..+++.+|.+...
T Consensus 308 f~~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~~~~~~~ii~lp~~lF~~t~i~~~Il~l~k~k~~~ 380 (489)
T COG0286 308 FLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLEDNLLEAIIGLPTGLFYNTGIPTNILFLTKNKPAE 380 (489)
T ss_pred HHHHHHHhcCCCceEEEEecCCcCcCCCchHHHHHHHHhccceEEeeeCChhhcccCCCCeEEEEeecCCCCC
Confidence 999999999999977666544222221 12222211 122222223222112235666778887765433
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.26 Score=51.12 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=42.8
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
..+||-||.|.|++...+.... .++++||+|+.+++.+++.+.- .+++++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~--~~~v~ii 80 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA--AGNVEII 80 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc--CCCEEEE
Confidence 4689999999999999999884 4899999999999999998853 3455544
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.12 Score=46.07 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=27.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcC
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF 99 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~ 99 (659)
.+.....|+|||||.+...|...|+ .=.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 3567899999999999999999998 6788885
|
; GO: 0008168 methyltransferase activity |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.57 Score=39.19 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=34.2
Q ss_pred eEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh
Q 006149 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 544 ~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~ 583 (659)
+++-+|.|.|.+...+.. .+..++.++|+++..++.+++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~ 39 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARK 39 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHH
Confidence 478999999998888887 567799999999999999984
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.62 Score=50.02 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=38.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCC-ccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~-~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||.||.|.|.++..+.+..+. ..|++||++|.+++.|++-+
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l 125 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV 125 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH
Confidence 468999999999999999887753 47999999999999998754
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.24 Score=52.35 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=67.9
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe--ecCCC------CCCCCccc
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM--DMTSM------QFMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~--D~~~l------~~~~~sFD 136 (659)
+++.+||.+|+|+ |..+...++. |..+|+.+|.++.-++.+++ +-. ..+..... +...+ -+....||
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga--~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA--TVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC--eEEeeccccccHHHHHHHHHhhccccCCC
Confidence 5789999999998 5555655655 88899999999999997765 311 11111111 01110 12334588
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
+.++-..++ ..++.....+++||.+++..+..+..
T Consensus 245 ~~~dCsG~~-------------~~~~aai~a~r~gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 245 VTFDCSGAE-------------VTIRAAIKATRSGGTVVLVGMGAEEI 279 (354)
T ss_pred eEEEccCch-------------HHHHHHHHHhccCCEEEEeccCCCcc
Confidence 888654333 55777788999999999998886554
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.15 Score=53.84 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=41.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+.+||=+|.|.|+++..+.+.+|+.++++||+++..+++|++.+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999875
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.3 Score=50.46 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=44.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
...+||-||-|.|.+...|.+..+ ++++||+|+.+++.+++.++. ++++.+.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~--~~~v~v~ 80 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL--YERLEVI 80 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc--CCcEEEE
Confidence 346899999999999999999885 599999999999999998864 4566554
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.53 Score=48.26 Aligned_cols=81 Identities=11% Similarity=0.199 Sum_probs=62.6
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCC------ccEEEEecChhHHHHHHhhc---CCCCCCCe-----------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPF------VGIEAVELDLTMLNLAEDYF---GFTQDKSL----------------- 593 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~------~~i~~VEiDp~V~~vA~~~F---gl~~d~rl----------------- 593 (659)
+...++|=+++|.|-++--+.++.+. .+|+++||+|.++.++++-= ++.++.|+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 34578999999999999888888776 79999999999999998776 77766655
Q ss_pred eEE------ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 594 KVF------NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 594 ~vf------~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
|+| ... .-..-.+..+++| +|+|.+..
T Consensus 179 D~yTiafGIRN~th~~k~l~EAYRVL---KpGGrf~c 212 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQKALREAYRVL---KPGGRFSC 212 (296)
T ss_pred eeEEEecceecCCCHHHHHHHHHHhc---CCCcEEEE
Confidence 333 111 2344567789999 99997764
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.24 Score=51.84 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=43.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
...+||=||-|.|.+...|....+ ++++||+|+.+++.+++-+. ++++++.
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~---~~~v~~i 92 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA---EDNLTII 92 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc---cCceEEE
Confidence 346899999999999999999875 89999999999999998774 2466554
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.25 Score=52.04 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=54.9
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC------------CCCCeeEE------ecc-
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT------------QDKSLKVF------NHL- 599 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~------------~d~rl~vf------~~l- 599 (659)
+.+||-||.|.|.++.+|... +.+|++||+++.+++.|++.. ++. .+++.|+. .++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCC
Confidence 469999999999999999875 369999999999999887654 221 01233432 122
Q ss_pred --cchhHHHHHHHhhccCCCCcEEE
Q 006149 600 --FCLQLEEDVNLVLFGLSSESCIK 622 (659)
Q Consensus 600 --~~~~f~~~~~~~Lf~~~~~g~~~ 622 (659)
....+.+.+.++| +++|.+.
T Consensus 199 ~~~~~~~l~~~~~~L---kpgG~~l 220 (287)
T PRK12335 199 RERIPAIIKNMQEHT---NPGGYNL 220 (287)
T ss_pred HHHHHHHHHHHHHhc---CCCcEEE
Confidence 1245778889999 9999743
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.67 Score=47.59 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=70.2
Q ss_pred CCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhc---CCCCCCCe---eE--------Eec-----ccc
Q 006149 542 SVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSL---KV--------FNH-----LFC 601 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl---~v--------f~~-----l~~ 601 (659)
..+|+-.|-|.|+|+.+|.+. .|.-+++.+|++++-.+.|++-| |+.+.-.+ |+ |+. .--
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp~P 174 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDLPDP 174 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcCCCh
Confidence 479999999999999999974 56679999999999999999765 55431111 11 122 236
Q ss_pred hhHHHHHHHhhccCCCCcEEEe--cCchHHHHHHHhhcc
Q 006149 602 LQLEEDVNLVLFGLSSESCIKD--NSFPEAAVQLGKLVK 638 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~--n~~~~~~~~l~~~~~ 638 (659)
.++.+.+..+| +++|.+++ -++.+....+.++.+
T Consensus 175 W~~le~~~~~L---kpgg~~~~y~P~veQv~kt~~~l~~ 210 (256)
T COG2519 175 WNVLEHVSDAL---KPGGVVVVYSPTVEQVEKTVEALRE 210 (256)
T ss_pred HHHHHHHHHHh---CCCcEEEEEcCCHHHHHHHHHHHHh
Confidence 67889999999 99998876 446666666666665
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.22 Score=46.74 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=59.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC-------CCCCCeeEE------ecc-cchhHH
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-------TQDKSLKVF------NHL-FCLQLE 605 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl-------~~d~rl~vf------~~l-~~~~f~ 605 (659)
....+||=||.|.|.+...++.... ++++||+++.+++.....+.. ..+...|+. +|+ .-..+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l 98 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFL 98 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHH
Confidence 4568999999999999999976643 899999999999871111110 122344443 555 357888
Q ss_pred HHHHHhhccCCCCcEEEecCc
Q 006149 606 EDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 606 ~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
+.+.++| +|+|.+....+
T Consensus 99 ~~l~~~L---kpgG~l~~~~~ 116 (161)
T PF13489_consen 99 KELSRLL---KPGGYLVISDP 116 (161)
T ss_dssp HHHHHCE---EEEEEEEEEEE
T ss_pred HHHHHhc---CCCCEEEEEEc
Confidence 8999999 99998877553
|
... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.92 Score=45.35 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=55.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC--------------CCCeeEE-ecccch
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ--------------DKSLKVF-NHLFCL 602 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~--------------d~rl~vf-~~l~~~ 602 (659)
...+||-||.|.|.++.++.... .++++||+++.+++.|++.| ++.. ....|+. ..-...
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~ 155 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAP 155 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCch
Confidence 34799999999999988887765 37999999999999999876 3321 0112211 111122
Q ss_pred hHHHHHHHhhccCCCCcEEEecCc
Q 006149 603 QLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
.+.+.+.+.| +++|.++....
T Consensus 156 ~~~~~l~~~L---~~gG~lv~~~~ 176 (212)
T PRK00312 156 EIPRALLEQL---KEGGILVAPVG 176 (212)
T ss_pred hhhHHHHHhc---CCCcEEEEEEc
Confidence 3345667778 99998877554
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.27 Score=54.88 Aligned_cols=125 Identities=15% Similarity=0.214 Sum_probs=78.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeec-CCCCCCCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM-TSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~--~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~-~~l~~~~~sFDvVi~~g~l 144 (659)
.-..|+|...|.|.++..|.+.+. -+|+-+ ..+..+....+| + -+- .-.|. +.++.-+.+||+|-+.+.|
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----G-LIG-~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----G-LIG-VYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----c-cch-hccchhhccCCCCcchhheehhhhh
Confidence 346899999999999999988753 122222 112222211111 1 011 11222 2344445899999999988
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh-ccCceEEEeeeCC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAIPQ 205 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~-~~~w~~~~~~i~~ 205 (659)
....+.- .++.++-|+-|+|+|||.+++-+-. .+...+-.-. ...|...+.....
T Consensus 438 s~~~~rC----~~~~illEmDRILRP~G~~iiRD~~--~vl~~v~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 438 SLYKDRC----EMEDILLEMDRILRPGGWVIIRDTV--DVLEKVKKIAKSLRWEVRIHDTED 493 (506)
T ss_pred hhhcccc----cHHHHHHHhHhhcCCCceEEEeccH--HHHHHHHHHHHhCcceEEEEecCC
Confidence 8765432 3789999999999999999997753 4444443333 3479888876543
|
; GO: 0008168 methyltransferase activity |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.044 Score=56.85 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=65.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhh--------cCCCCcEE---EEeecCCCCC-CCC-
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV--------RDRSDMRW---RVMDMTSMQF-MDE- 133 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~--------~~~~~i~~---~~~D~~~l~~-~~~- 133 (659)
..+.+|||+|||.|.........|...+...|++..+++.-.--+. .......+ .+.+..+..+ ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 3578999999999999998888886689999999988731110000 00011111 1110001111 113
Q ss_pred -cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 134 -TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 134 -sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.||+|.+.-+++...... ..+......+++++|+++...
T Consensus 195 ~~ydlIlsSetiy~~~~~~------~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLA------VLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred cchhhhhhhhhhhCcchhh------hhHhhhhhhcCCccchhhhhh
Confidence 799999988888865543 122566677788899887654
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.2 Score=53.39 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=41.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
+.+||=+|.|.|+++..+...+|+.++++|||+|..+++|++..
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~ 177 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI 177 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999875
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.34 Score=52.58 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=65.0
Q ss_pred CCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe-ecC-C-CCCCC-CcccEEEec
Q 006149 68 PPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-DMT-S-MQFMD-ETFDVILDK 141 (659)
Q Consensus 68 ~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~-D~~-~-l~~~~-~sFDvVi~~ 141 (659)
++.+|+.+|||+ |.++..+++. |...|+.+|.++.-++.+++..... .+..... +.. . ..... ..+|+++..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~--~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD--VVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe--EeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 445999999998 6666666665 7789999999998888775533211 0111101 100 0 01112 369999964
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.. . ..++..+.+.+++||.+++.....
T Consensus 246 ~G-----~--------~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 246 VG-----S--------PPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CC-----C--------HHHHHHHHHHhcCCCEEEEEeccC
Confidence 43 1 267999999999999999988753
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.31 Score=51.16 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=51.8
Q ss_pred eEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC--CCcccEEEeccc
Q 006149 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM--DETFDVILDKGG 143 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~--~~sFDvVi~~g~ 143 (659)
+++|+-||.|.++.-+...|+..+.++|+++.+++..+... +.. .+++|+.++... ...+|+|+....
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~----~~~-~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANF----PNK-LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhC----CCC-CccCccccCchhhcCCCCCEEEeCCC
Confidence 68999999999999998889878899999998887553332 222 677888887532 357999996543
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.39 Score=51.06 Aligned_cols=76 Identities=9% Similarity=0.097 Sum_probs=51.5
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (659)
.+.+...+.+++.. .++..++|.-.|.|..+..+.+. +...++|+|-++.+++.+.++......++.++.+++.++
T Consensus 5 ~PVll~Evl~~L~~---~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 5 IPVLLKEVLEALNP---KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNL 81 (310)
T ss_dssp --TTHHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGH
T ss_pred ecccHHHHHHhhCc---CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHH
Confidence 34555566677764 67889999999999999999876 447999999999999877666544446677777666554
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.76 Score=49.36 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=58.4
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCC-cEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~-i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++.+||..|||. |..+..+++. |..+|+++|.++.-++.+++ .. ... +.....|+.+.....+.+|+|++.-.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-lG--a~~vi~~~~~~~~~~~~~~g~~D~vid~~G 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-MG--ADKLVNPQNDDLDHYKAEKGYFDVSFEVSG 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-cC--CcEEecCCcccHHHHhccCCCCCEEEECCC
Confidence 3678999999863 3344555554 66679999999987775533 21 111 11111111111111235898885321
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
. ...+....+.|++||+++++...
T Consensus 245 -----~--------~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 245 -----H--------PSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred -----C--------HHHHHHHHHHhhcCCEEEEEccC
Confidence 1 14577888899999999988753
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.69 Score=49.75 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=64.3
Q ss_pred CCCCCeEEEECCC-cchHHHHHHH-cCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEee-cCCCCCCCCcccEEEecc
Q 006149 66 SSPPPQILVPGCG-NSRLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD-MTSMQFMDETFDVILDKG 142 (659)
Q Consensus 66 ~~~~~~ILDiGCG-~G~~s~~La~-~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D-~~~l~~~~~sFDvVi~~g 142 (659)
..|+.+|+-+|+| -|.++..+++ .| .+|+++|.++.-.+.+++.-+ -.++... -....--.+.||+|++.-
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA-----d~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA-----DHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC-----cEEEEcCCchhhHHhHhhCcEEEECC
Confidence 3689999999998 2356677777 47 599999999977776644321 1233322 111111123499999754
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
. . ..+....+.|++||+++++-+.
T Consensus 238 ~-~-------------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G-P-------------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C-h-------------hhHHHHHHHHhcCCEEEEECCC
Confidence 3 2 4588889999999999999876
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.3 Score=45.34 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=75.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc----CC-CeEEEEcCCHHHHHHHHHHhhcCCCCc--EEEEeecCCC--CCCCCccc-E
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA----GF-HGITNVDFSKVVISDMLRRNVRDRSDM--RWRVMDMTSM--QFMDETFD-V 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~----g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i--~~~~~D~~~l--~~~~~sFD-v 137 (659)
.+...+|+|.||+.-+..|.+. +. ..++.||+|...+....+......+.+ .-+++|...- ..+...-- .
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 4689999999999988877664 32 579999999999987666665566654 4466665431 12222222 3
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
++...++.++...+ ...+|..+...|+||-+|++-.
T Consensus 158 ~flGStlGN~tp~e-----~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 158 VFLGSTLGNLTPGE-----CAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEecccccCCChHH-----HHHHHHHHHhcCCCcceEEEec
Confidence 44455677776655 6799999999999999988765
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.29 Score=49.21 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=52.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhcCCCCCCCe-----------------eE-Eecccch
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSL-----------------KV-FNHLFCL 602 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl-----------------~v-f~~l~~~ 602 (659)
..+||-||.|.|=++-.|.+... .-+|..||+||.+++.|++-+.-..-.++ |. +-.-...
T Consensus 73 g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~ 152 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVP 152 (209)
T ss_dssp T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBBS
T ss_pred CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeeccc
Confidence 46999999999998888888753 44799999999999999998731111122 21 1112233
Q ss_pred hHHHHHHHhhccCCCCcEEEec
Q 006149 603 QLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
+.-+..-.-| +++|.+++-
T Consensus 153 ~ip~~l~~qL---~~gGrLV~p 171 (209)
T PF01135_consen 153 EIPEALLEQL---KPGGRLVAP 171 (209)
T ss_dssp S--HHHHHTE---EEEEEEEEE
T ss_pred hHHHHHHHhc---CCCcEEEEE
Confidence 4445566678 899988763
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.49 Score=46.90 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=55.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC--------------CCCeeEE------ecc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ--------------DKSLKVF------NHL 599 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~--------------d~rl~vf------~~l 599 (659)
+.-.++|-+|.|.|.|..-|..+. -+++++|+.|.-++.||+-.+-.+ +.+.|+. .+|
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGGS
T ss_pred cccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHcC
Confidence 445789999999999999999886 489999999999999998764221 1222332 344
Q ss_pred cch-h---HHHHHHHhhccCCCCcEEEecCc
Q 006149 600 FCL-Q---LEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 600 ~~~-~---f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
... + +...+...| .|+|.++.=.+
T Consensus 120 ~~~~~L~~~l~~l~~~L---~pgG~LV~g~~ 147 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAAL---APGGHLVFGHA 147 (201)
T ss_dssp SSHHHHHHHHHHHHHTE---EEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHh---CCCCEEEEEEe
Confidence 432 2 344555566 99999888554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.38 Score=48.95 Aligned_cols=90 Identities=20% Similarity=0.184 Sum_probs=65.1
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC---------CCCCe---------eEE------ec
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---------QDKSL---------KVF------NH 598 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~---------~d~rl---------~vf------~~ 598 (659)
+-++=+|.|-|-.++-+..++ + +|.++|+.++++++|++++... +|+-. |+. +.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~-k-~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY-K-EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh-h-hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 468889999998888888886 3 7999999999999999999654 12211 332 23
Q ss_pred ccchhHHHHHHHhhccCCCCc-EEEe---c--C--chHHHHHHHhhc
Q 006149 599 LFCLQLEEDVNLVLFGLSSES-CIKD---N--S--FPEAAVQLGKLV 637 (659)
Q Consensus 599 l~~~~f~~~~~~~Lf~~~~~g-~~~~---n--~--~~~~~~~l~~~~ 637 (659)
..-..||..++++| +++| ++++ | . +++.-..+.++.
T Consensus 113 Fdle~fy~~~~rvL---Rk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~ 156 (261)
T KOG3010|consen 113 FDLERFYKEAYRVL---RKDGGLIAVWNYNDDFVDWPEFDSVMLRLY 156 (261)
T ss_pred hchHHHHHHHHHHc---CCCCCEEEEEEccCCCcCCHHHHHHHHHHh
Confidence 44778999999999 9888 6655 3 1 566555554443
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.63 Score=48.37 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=55.1
Q ss_pred CccchH-HHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCC
Q 006149 512 GYLASS-YHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQD 590 (659)
Q Consensus 512 ~~L~~~-Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d 590 (659)
.+|..+ ..+.|+..+-+ .....|+-||-|-|.|.+.|.+.. .++++||+|+..++.-++-|. .+
T Consensus 11 nFL~~~~~~~~Iv~~~~~-----------~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~~ 75 (262)
T PF00398_consen 11 NFLVDPNIADKIVDALDL-----------SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--SN 75 (262)
T ss_dssp SEEEHHHHHHHHHHHHTC-----------GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--TC
T ss_pred CeeCCHHHHHHHHHhcCC-----------CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--hc
Confidence 455433 55666654322 234689999999999999999988 699999999999999999888 67
Q ss_pred CCeeEE
Q 006149 591 KSLKVF 596 (659)
Q Consensus 591 ~rl~vf 596 (659)
+++.++
T Consensus 76 ~~~~vi 81 (262)
T PF00398_consen 76 PNVEVI 81 (262)
T ss_dssp SSEEEE
T ss_pred ccceee
Confidence 788777
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.93 Score=42.68 Aligned_cols=111 Identities=16% Similarity=0.272 Sum_probs=76.2
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCC
Q 006149 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMD 132 (659)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~ 132 (659)
..++.++.. ++..+.+|+|.|.|+.....++.|...-+|++.++-.+...+-+..+.+ .+..|..-|+.+.++.+
T Consensus 62 ~nVLSll~~---n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 62 ENVLSLLRG---NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHHHHccC---CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 345555554 6778999999999999999998886689999999988876655444333 56788888888877655
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
-.+=+|+ ++-..+ ..+-..+..-|..|.+++..-+.
T Consensus 139 y~~vviF--gaes~m----------~dLe~KL~~E~p~nt~vvacRFP 174 (199)
T KOG4058|consen 139 YRNVVIF--GAESVM----------PDLEDKLRTELPANTRVVACRFP 174 (199)
T ss_pred cceEEEe--ehHHHH----------hhhHHHHHhhCcCCCeEEEEecC
Confidence 4444444 322222 23344555567778887776654
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.28 Score=53.52 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=60.7
Q ss_pred CeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCC-CCcccEEEecccccc
Q 006149 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFM-DETFDVILDKGGLDA 146 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~-~~sFDvVi~~g~l~~ 146 (659)
.-|||||.|||.++...+..|...||+++.-..|.+.|++....++ .+|+++.---++.... ...-|+++..-..--
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtE 147 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTE 147 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhh
Confidence 4699999999999998888887789999999999998877655444 5666654433333211 123555553322222
Q ss_pred cCCcccchHHHHHHHHHHHhccccC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSG 171 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpG 171 (659)
+.... +-.-+++.++.|...
T Consensus 148 ligeG-----alps~qhAh~~L~~~ 167 (636)
T KOG1501|consen 148 LIGEG-----ALPSLQHAHDMLLVD 167 (636)
T ss_pred hhccc-----cchhHHHHHHHhccc
Confidence 21111 224466666665443
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.53 Score=47.27 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=38.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
...+||=||.|.|.+...+... ..++++||++|.+++.|++.+.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHH
Confidence 4579999999999999999875 3589999999999999998763
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=91.60 E-value=1.1 Score=45.60 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=54.4
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHH----HHHhhcCCC------C--------CCCeeEE-ecccc-
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLN----LAEDYFGFT------Q--------DKSLKVF-NHLFC- 601 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~----vA~~~Fgl~------~--------d~rl~vf-~~l~~- 601 (659)
..+||=+|.|.|.+...|....+.-+|.+||+++.+++ .|++.-+.. . .+.+|+. .++..
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p 152 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQP 152 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCCCh
Confidence 36899999999999999999887568999999997776 444321110 0 1224443 22322
Q ss_pred ---hhHHHHHHHhhccCCCCcEEEe
Q 006149 602 ---LQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 602 ---~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
..+.+.++++| +|+|.+++
T Consensus 153 ~~~~~~L~~~~r~L---KpGG~lvI 174 (226)
T PRK04266 153 NQAEIAIDNAEFFL---KDGGYLLL 174 (226)
T ss_pred hHHHHHHHHHHHhc---CCCcEEEE
Confidence 12467888899 99998776
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.57 Score=49.67 Aligned_cols=53 Identities=25% Similarity=0.286 Sum_probs=42.8
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-CCCeeEE
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVF 596 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-d~rl~vf 596 (659)
..+||=||-|.|.|...|.... .++++||||+.+++.+++.|.-.. .+++.++
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii 90 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVI 90 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEE
Confidence 3589999999999999998864 479999999999999998874321 3456554
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=91.52 E-value=1.4 Score=48.37 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=38.4
Q ss_pred CCCCCcccEEEecccccccCCcccc--------------------h-----------HHHHHHHHHHHhccccCeEEEEE
Q 006149 129 QFMDETFDVILDKGGLDALMEPELG--------------------H-----------KLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~~--------------------~-----------~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
-||.++.+++++..++||+..-..+ + .++..+|+.=.+-|.|||++++.
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 4889999999999999998732111 0 11445555556778899999998
Q ss_pred EcCCc
Q 006149 178 TLAES 182 (659)
Q Consensus 178 ~~~~~ 182 (659)
.++.+
T Consensus 237 ~~Gr~ 241 (386)
T PLN02668 237 CLGRT 241 (386)
T ss_pred EecCC
Confidence 87754
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.36 Score=49.02 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=39.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhh----CCCccEEEEecChhHHHHHHhhc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHEC----MPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~----~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+.+||=||.|.|.++..|... .|+.++++||++|.+++.|++-.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~ 108 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP 108 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc
Confidence 45679999999999998888754 45679999999999999999865
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.34 E-value=1.7 Score=44.87 Aligned_cols=104 Identities=15% Similarity=0.062 Sum_probs=69.0
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC-------CCCcEEEEeecCCCC---CCCCc-ccE
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-------RSDMRWRVMDMTSMQ---FMDET-FDV 137 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~-------~~~i~~~~~D~~~l~---~~~~s-FDv 137 (659)
..+||++|.|+|..+..++.....+|+..|....+.. +......+ +..+.....+..+.+ +-... ||+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 5679999999998788777765568999998765443 33221111 124555555544432 22233 999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|++..+++.-...+ .++.-+..+|..+|.+++...-
T Consensus 166 ilasDvvy~~~~~e-------~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 166 ILASDVVYEEESFE-------GLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred EEEeeeeecCCcch-------hHHHHHHHHHhcCCeEEEEEec
Confidence 99999888765544 7888888899988866555544
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.29 E-value=1.4 Score=46.50 Aligned_cols=93 Identities=15% Similarity=0.178 Sum_probs=70.6
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCC---------------eeEE-------ec-c
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKS---------------LKVF-------NH-L 599 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~r---------------l~vf-------~~-l 599 (659)
.+||=+|.|.|.|--.+.+..|..+++.||+|..-++.||+=.-...-++ +|.. +. -
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNPPfh~G~~ 239 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNPPFHAGKA 239 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEEEeCCCccCCcc
Confidence 49999999999999999999999999999999999999998764321111 1211 11 1
Q ss_pred c----chhHHHHHHHhhccCCCCc--EEEecCchHHHHHHHhhcc
Q 006149 600 F----CLQLEEDVNLVLFGLSSES--CIKDNSFPEAAVQLGKLVK 638 (659)
Q Consensus 600 ~----~~~f~~~~~~~Lf~~~~~g--~~~~n~~~~~~~~l~~~~~ 638 (659)
. ..++.+...+.| +++| -+++|.+......|+++.+
T Consensus 240 v~~~~~~~~i~~A~~~L---~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 240 VVHSLAQEIIAAAARHL---KPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred hhHHHHHHHHHHHHHhh---ccCCEEEEEEcCCCChHHHHHHhcC
Confidence 2 348889999999 9999 4577987777666666543
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=91.27 E-value=1.6 Score=49.79 Aligned_cols=99 Identities=20% Similarity=0.303 Sum_probs=63.5
Q ss_pred CCCCeEEEECCCcch-HHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC-----------CC----
Q 006149 67 SPPPQILVPGCGNSR-LSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-----------MQ---- 129 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~-~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~-----------l~---- 129 (659)
.++.+|+.+|||.=. .+...++. |. .|+++|.++..++++.. . ..++...|..+ +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes-l-----GA~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES-M-----GAEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-c-----CCeEEEeccccccccccchhhhcchhHH
Confidence 478999999999844 45555554 76 89999999988876643 2 12322222211 10
Q ss_pred ------CCC--CcccEEEecccccccCCcccchHHHHHH-HHHHHhccccCeEEEEEEcC
Q 006149 130 ------FMD--ETFDVILDKGGLDALMEPELGHKLGNQY-LSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 130 ------~~~--~sFDvVi~~g~l~~l~~~~~~~~~~~~~-l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.+ ..+|+|+.......-..+ .+ .++..+.+||||+++.+...
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP--------~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPAP--------KLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccCc--------chHHHHHHHhcCCCCEEEEEccC
Confidence 111 368999975544322122 34 49999999999999888753
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.8 Score=49.02 Aligned_cols=80 Identities=9% Similarity=0.037 Sum_probs=56.5
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHH---HHHhhcCCC--------------CCCCeeEE------ec
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLN---LAEDYFGFT--------------QDKSLKVF------NH 598 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~---vA~~~Fgl~--------------~d~rl~vf------~~ 598 (659)
.++||=||.|.|.+...+....+. .+++||+++.++. .++++++.. ..+..|+. .|
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYH 200 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhc
Confidence 479999999999998888877665 7999999998875 344554321 12233433 33
Q ss_pred cc-chhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 LF-CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l~-~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+- -..+...++++| +++|.++...
T Consensus 201 ~~dp~~~L~el~r~L---kpGG~Lvlet 225 (314)
T TIGR00452 201 RKSPLEHLKQLKHQL---VIKGELVLET 225 (314)
T ss_pred cCCHHHHHHHHHHhc---CCCCEEEEEE
Confidence 32 236888999999 9999887643
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.4 Score=49.62 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=40.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
+.+||=+|.|.|+++..+.+.+|..++++||+||..+++|++-+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~ 130 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL 130 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 45899999999999999999999889999999999999999754
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.55 Score=48.48 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=51.0
Q ss_pred CCeEEEECCCcchHHHHHHHc-C--------CCeEEEEcCCHHHHHHHHHHhhcC-------CCCcEEEEeecCCCCCCC
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-G--------FHGITNVDFSKVVISDMLRRNVRD-------RSDMRWRVMDMTSMQFMD 132 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g--------~~~VtgvD~S~~~i~~~~~~~~~~-------~~~i~~~~~D~~~l~~~~ 132 (659)
+.+|+|+|+|+|.++..+.+. . ..+++-||.|+.+.+..+++.... ..++.| ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 479999999999999888764 1 247999999998887666665442 234566 23443333
Q ss_pred CcccEEEecccccccCCc
Q 006149 133 ETFDVILDKGGLDALMEP 150 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~ 150 (659)
..-+|+++..||+++..
T Consensus 95 -~~~~iiaNE~~DAlP~~ 111 (252)
T PF02636_consen 95 -FPGFIIANELFDALPVD 111 (252)
T ss_dssp -CCEEEEEESSGGGS--E
T ss_pred -CCEEEEEeeehhcCcee
Confidence 45778999999998643
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.64 Score=51.44 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=40.1
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+||=||.|.|.++..+...+|..++++||++|.++++|++-.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa 295 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNA 295 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 5899999999999999999899999999999999999998764
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.63 Score=51.04 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=70.5
Q ss_pred CCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC--C-CcEEEEeecCCCC-CCCCcccEEEecc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--S-DMRWRVMDMTSMQ-FMDETFDVILDKG 142 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~--~-~i~~~~~D~~~l~-~~~~sFDvVi~~g 142 (659)
+.+|||.=+|+|.=+...+.. +...|+.-|+|+.+++.+++....++ . .+++.++|+..+= .....||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID--- 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID--- 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE---
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE---
Confidence 469999999999888777665 55799999999999998866544443 2 4788888887742 2467899984
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+|-+.++. .++..+.+.++.||.+.+..
T Consensus 127 -lDPfGSp~-------pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 -LDPFGSPA-------PFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -E--SS--H-------HHHHHHHHHEEEEEEEEEEE
T ss_pred -eCCCCCcc-------HhHHHHHHHhhcCCEEEEec
Confidence 56666654 89999999999999887765
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.43 Score=50.22 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=40.4
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+||=||.|.|.++..+...+|+.++++||+++..+++|++-.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999854
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.72 Score=49.48 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=40.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 587 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl 587 (659)
+...++|=||-|+|++.-.|....++.+++++||||..++.|++-...
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~ 160 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISA 160 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 356799999999887777777667788999999999999999977644
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.56 Score=47.88 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=46.3
Q ss_pred CeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHH---HHhhcCC-------CCcEEEEeecCCC-CCCCCcccEE
Q 006149 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML---RRNVRDR-------SDMRWRVMDMTSM-QFMDETFDVI 138 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~---~~~~~~~-------~~i~~~~~D~~~l-~~~~~sFDvV 138 (659)
.+|||.-||-|..+..++..|. +|++++-|+.+-.-.. +++.... .+|+++.+|..++ +.++.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 5999999999999999998887 8999999986544332 3332222 2689999998874 5567899999
Q ss_pred Eecccccc
Q 006149 139 LDKGGLDA 146 (659)
Q Consensus 139 i~~g~l~~ 146 (659)
+.-.++.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 97666654
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.84 Score=48.50 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=38.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhh
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~ 584 (659)
.+.+||=+|.|.|..+..|...++ ..++++|||++++++.|++.
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~ 107 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAA 107 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHH
Confidence 346899999999999999998886 57999999999999988764
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.45 Score=46.10 Aligned_cols=42 Identities=12% Similarity=0.205 Sum_probs=37.2
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||.+|.|.|.+...+... ..+++++|++|.+++.|++.+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~ 65 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNA 65 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHH
Confidence 468999999999999999887 479999999999999997665
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=90.58 E-value=1.6 Score=42.73 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=31.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhH
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTM 577 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V 577 (659)
...+||.||.|.|.+...+...+ +..+|++||++|..
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 34689999999999999888776 56789999999954
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=1.1 Score=45.35 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=57.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-----------------CCCCeeEE------e
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----------------QDKSLKVF------N 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-----------------~d~rl~vf------~ 597 (659)
...+||-||.|.|.+...+.... .+++++|+++..++.|++.+... .+...|+. .
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 35689999999999998888763 57999999999999998765311 11122332 2
Q ss_pred cc-cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 HL-FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l-~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
++ ...++.+.+.+.| +++|.+....
T Consensus 126 ~~~~~~~~l~~~~~~L---~~gG~l~v~~ 151 (233)
T PRK05134 126 HVPDPASFVRACAKLV---KPGGLVFFST 151 (233)
T ss_pred ccCCHHHHHHHHHHHc---CCCcEEEEEe
Confidence 22 2345668888899 9999887654
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.83 Score=45.39 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHH
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 108 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~ 108 (659)
...+...+.+... .+++.|||.-||+|..+......|- +.+|+|+++..++.+.
T Consensus 177 P~~l~~~lI~~~t----~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 177 PVELIERLIKAST----NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAK 230 (231)
T ss_dssp -HHHHHHHHHHHS-----TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHhhh----ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhc
Confidence 3445555555555 4789999999999999988888875 8999999999988664
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=90.12 E-value=1.6 Score=47.76 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=64.5
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC-----C-CC-CCCcccE
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-----M-QF-MDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~-----l-~~-~~~sFDv 137 (659)
.++.+||..|||. |..+..+++. |...|+++|.++..++.+++.. ...++...-.+ + .+ ....+|+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~-----~~~vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL-----GAETINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-----CcEEEcCCcchHHHHHHHHHcCCCCCCE
Confidence 4678999999988 8888888876 6556999999998777654431 11222111110 0 11 2236999
Q ss_pred EEecccccc-------c------CCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 138 ILDKGGLDA-------L------MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 138 Vi~~g~l~~-------l------~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|++.-.-.. + ...+ -...+.++.+.|+++|+++....
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETD-----RPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EEECCCCcccccccccccccccccccC-----chHHHHHHHHHhccCCEEEEEcC
Confidence 997432110 0 0000 12578889999999999988864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.03 E-value=2.3 Score=45.97 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=78.2
Q ss_pred CCCCCeEEEECCCcchHHHHHHHcCC-----CeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC---------
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDAGF-----HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--------- 129 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~g~-----~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--------- 129 (659)
.+|+.+|||+.+..|.-+..|.+..+ +.|++=|++..-+....... ... +++.+...|+..+|
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~-~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL-KRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH-hccCCcceeeecccceeccccccccCch
Confidence 46899999999999999988877522 26999999987776554444 222 34445555554443
Q ss_pred CCCCcccEEEec------ccccccCCcccc-h---------HHHHHHHHHHHhccccCeEEEEEEcCCchhhc
Q 006149 130 FMDETFDVILDK------GGLDALMEPELG-H---------KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186 (659)
Q Consensus 130 ~~~~sFDvVi~~------g~l~~l~~~~~~-~---------~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~ 186 (659)
.....||-|++- |++....+.... + ..--++|.+-.++||+||+++-+|.+-..+..
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieN 304 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIEN 304 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhh
Confidence 123469999842 222221111100 1 12457889999999999999999988666554
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.03 E-value=1.8 Score=45.63 Aligned_cols=75 Identities=12% Similarity=0.128 Sum_probs=59.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (659)
+.+.......+.. .++...+|.--|.|..+..+.... .++++|+|-.+.+|+.++++...-.+++++++.++.++
T Consensus 9 pVLl~E~i~~L~~---~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l 85 (314)
T COG0275 9 PVLLNEVVELLAP---KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANL 85 (314)
T ss_pred chHHHHHHHhccc---CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHH
Confidence 3444445555554 688999999999999999988873 36799999999999999888866667888888877665
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.97 Score=47.61 Aligned_cols=56 Identities=20% Similarity=0.161 Sum_probs=44.8
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhh
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV 112 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~ 112 (659)
.+...+.+... .+++.|||.-||+|..+....+.|- +.+|+|+++..++.+++|..
T Consensus 196 ~L~erlI~~~S----~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 196 ALLKRIILASS----NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHH
Confidence 34444444444 4899999999999999988877774 89999999999998888863
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.46 Score=48.55 Aligned_cols=44 Identities=27% Similarity=0.230 Sum_probs=38.7
Q ss_pred CCeEEEEccCcchHHHHHHhhC---CCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~---p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||=+|.|.|.++..+.+.. +..+|++||||+..+++|++-+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~ 96 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV 96 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc
Confidence 4699999999999999998764 3579999999999999999764
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.64 Score=46.76 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=38.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
...+||-||.|.|.+...|.... .++++||+++.+++.|++.+.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAP 106 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH
Confidence 34689999999999999998765 469999999999999999874
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.29 E-value=1.2 Score=46.24 Aligned_cols=54 Identities=28% Similarity=0.353 Sum_probs=43.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHH-HHHHhhcCCCCCCCeeEE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTML-NLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~-~vA~~~Fgl~~d~rl~vf 596 (659)
.+--||-||-|.|.|..-|...- .+|.+||+||.++ ++.++.=|.+...+++|+
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~ 112 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL 112 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEE
Confidence 44579999999999999999875 5899999999876 466666688866777655
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.7 Score=46.98 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=55.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC--------CC-CCCCeeEE------ecc-cchhH
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG--------FT-QDKSLKVF------NHL-FCLQL 604 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg--------l~-~d~rl~vf------~~l-~~~~f 604 (659)
.+.+||=||.|.|.+...|.+.+ +.+|++||+++.++++|++--. ++ +|...|+. .++ .-...
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~ 129 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKV 129 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHH
Confidence 35799999999999999999887 4699999999999999986421 11 23344544 222 23457
Q ss_pred HHHHHHhhccCCCCc
Q 006149 605 EEDVNLVLFGLSSES 619 (659)
Q Consensus 605 ~~~~~~~Lf~~~~~g 619 (659)
...++++| ++..
T Consensus 130 l~e~~RvL---kp~~ 141 (226)
T PRK05785 130 IAEFTRVS---RKQV 141 (226)
T ss_pred HHHHHHHh---cCce
Confidence 78899999 8854
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.6 Score=49.13 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=38.8
Q ss_pred eEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhh
Q 006149 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 544 ~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~ 584 (659)
+||=||-|.|+++-.|.+.+|+.+|+++||+|.-+++|++=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN 153 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999653
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.38 Score=45.97 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=63.5
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcE-EEEeecCCC-CCCCCcccEEEecccccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMR-WRVMDMTSM-QFMDETFDVILDKGGLDA 146 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~-~~~~D~~~l-~~~~~sFDvVi~~g~l~~ 146 (659)
+.+.+.+|...=-.-....++|.++|..|+.++--|. +.. ..++. +...|+..- .--.++||++.+.++++|
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~---~~~---~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh 75 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQ---EEF---RDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEH 75 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccC---ccc---ccccccccHHHHHHHHHHhhccchhhheechhcc
Confidence 4577888877433323333558888999998762221 111 12222 122222211 112478999999999987
Q ss_pred cCCcc----cchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~----~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
..-.. -++..-.+.+.++.++||+||.+++..+.
T Consensus 76 ~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 76 FGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred ccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence 65211 11233568899999999999999988764
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.91 E-value=2 Score=43.76 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=64.3
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCCCCCe---------------------eEE--
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSL---------------------KVF-- 596 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl---------------------~vf-- 596 (659)
+-+|-||-|.|.....+....|+..+.+||+-..++.-|-+.. +++ +-|+ .++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5799999999999999999999999999999999998887776 331 1111 122
Q ss_pred ----------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 597 ----------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 597 ----------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..|...+|.+.+.++| +++|.+-.-+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~L---k~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKL---KPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHc---cCCCEEEEEe
Confidence 2389999999999999 9999886644
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.9 Score=46.27 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=56.5
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHH---HHhhcCC--------------CCCCCeeEE------ec
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL---AEDYFGF--------------TQDKSLKVF------NH 598 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~v---A~~~Fgl--------------~~d~rl~vf------~~ 598 (659)
.++||=||.|.|.+...+....+. .|++||+++.++.- .+++.+. +.+...|+. .|
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H 201 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYH 201 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhc
Confidence 479999999999999988888776 69999999987753 2344432 112233332 33
Q ss_pred cc-chhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 LF-CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l~-~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+. -..+...++++| +++|.++...
T Consensus 202 ~~dp~~~L~~l~~~L---kpGG~lvl~~ 226 (322)
T PRK15068 202 RRSPLDHLKQLKDQL---VPGGELVLET 226 (322)
T ss_pred cCCHHHHHHHHHHhc---CCCcEEEEEE
Confidence 32 357788999999 9999887643
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.75 E-value=0.75 Score=45.25 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=36.9
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
+.|+=+|.|.|.|.--+.-..|. +|.+|||||+.+++|++--
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~ 88 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANA 88 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHH
Confidence 56999999999999888877776 9999999999999998654
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=88.71 E-value=0.2 Score=44.88 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=32.0
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.||+|+|-.+--++- ...++.++..+++.+++.|+|||+|++--
T Consensus 1 ~yDvilclSVtkWIH-Ln~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIH-LNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHH-HHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEE-ecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999877655432 12344559999999999999999998864
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=88.66 E-value=1.8 Score=45.77 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=55.4
Q ss_pred CCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.++|-+|||. |.++..+++. |...|+++|.++.-++.+.+. .+ .|..+. ....||+|++.-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~--------~~--i~~~~~--~~~g~Dvvid~~G-- 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY--------EV--LDPEKD--PRRDYRAIYDASG-- 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc--------cc--cChhhc--cCCCCCEEEECCC--
Confidence 467899999874 4455666665 776688889888655433211 01 111110 1346899986422
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
. ...+..+.+.|+++|++++....
T Consensus 210 ---~--------~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 210 ---D--------PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred ---C--------HHHHHHHHHhhhcCcEEEEEeec
Confidence 1 14578888999999999987653
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=88.62 E-value=0.91 Score=45.12 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=60.5
Q ss_pred eEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC-----------------CCCe-eEE------
Q 006149 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ-----------------DKSL-KVF------ 596 (659)
Q Consensus 544 ~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~-----------------d~rl-~vf------ 596 (659)
-+|=||-|.|.....+....|+..+.+||+....+.-|.+.. ++.. +..+ .+|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 688999999999999999999999999999999998776654 3321 1112 222
Q ss_pred --------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 597 --------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 597 --------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..|++.+|.+.+.++| +++|.+..-+
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L---~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVL---KPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHE---EEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHc---CCCCEEEEEe
Confidence 2389999999999999 9999775533
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=88.62 E-value=0.97 Score=41.81 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=43.0
Q ss_pred EEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 545 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 545 vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
++=||.|.|..+.++...+|..++.+||.||...+.+++.+....-+++.++
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~ 53 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLL 53 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEE
Confidence 5779999999999999999988999999999999999998854322345444
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=88.49 E-value=1.5 Score=44.68 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=39.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR 113 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~ 113 (659)
.+++.|||.-||+|..+......|- +.+|+|+++...+.+.++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 4789999999999999988877775 899999999999988777643
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.35 E-value=2.6 Score=42.25 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=47.4
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 512 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 512 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.++.-+|..++|..++-+ ....+||-||-|.|=.+-.|.+..- +|..||+++...+-|++-|
T Consensus 53 qtis~P~~vA~m~~~L~~----------~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L 114 (209)
T COG2518 53 QTISAPHMVARMLQLLEL----------KPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNL 114 (209)
T ss_pred ceecCcHHHHHHHHHhCC----------CCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHH
Confidence 345566766666443221 3447999999999988888887753 8999999999999999876
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=88.20 E-value=5.4 Score=39.26 Aligned_cols=90 Identities=23% Similarity=0.193 Sum_probs=66.4
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh---hcCCCCCCCeeEE--------------ec------c
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED---YFGFTQDKSLKVF--------------NH------L 599 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~---~Fgl~~d~rl~vf--------------~~------l 599 (659)
.+++=||.|.|+++-.+....|..++.++|-|++.+++.++ -||++ ++.+. +. .
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~---n~~vv~g~Ap~~L~~~~~~daiFIGGg~ 112 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD---NLEVVEGDAPEALPDLPSPDAIFIGGGG 112 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC---cEEEEeccchHhhcCCCCCCEEEECCCC
Confidence 47888999999999999999999999999999999998764 47754 22111 11 2
Q ss_pred cchhHHHHHHHhhccCCCCcEEEecC--chHHHHHHHhhcc
Q 006149 600 FCLQLEEDVNLVLFGLSSESCIKDNS--FPEAAVQLGKLVK 638 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~~~n~--~~~~~~~l~~~~~ 638 (659)
--.+..+.|...| +++|-++.|. +......++.+.+
T Consensus 113 ~i~~ile~~~~~l---~~ggrlV~naitlE~~~~a~~~~~~ 150 (187)
T COG2242 113 NIEEILEAAWERL---KPGGRLVANAITLETLAKALEALEQ 150 (187)
T ss_pred CHHHHHHHHHHHc---CcCCeEEEEeecHHHHHHHHHHHHH
Confidence 3456677888888 9999999988 3444444444444
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.86 E-value=0.99 Score=47.23 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=38.9
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||=+|-|.|.+...+.+..+..+|++||++|.++++|++-+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC
Confidence 46899999999999888887776679999999999999998754
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=87.80 E-value=4.1 Score=42.36 Aligned_cols=105 Identities=17% Similarity=0.117 Sum_probs=70.3
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC--------CCCCCcc
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM--------QFMDETF 135 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l--------~~~~~sF 135 (659)
...|+.+|||-=.-...+.......++-+|.-+ +++ .+++... ...+.+++.+|+... .|..+..
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~-~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLA-FKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHH-HHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 457999999976666666322213566666655 333 3333322 235788899998621 1333445
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
-++++.|++.++...+ +.++|+.+.+...||+.+++-...
T Consensus 160 tl~i~EGvl~YL~~~~-----v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEA-----VDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred eeeeecchhhcCCHHH-----HHHHHHHHHHhCCCCcEEEEEecc
Confidence 6888999999987655 789999999988899888876654
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=87.74 E-value=1.7 Score=43.48 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=55.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC------------------CCCeeEE------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ------------------DKSLKVF------ 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~------------------d~rl~vf------ 596 (659)
.+.+||-||.|.|.+...+.... .+++++|+++.+++.|++.+.-.. ....|+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999988887754 469999999999999988653211 0123332
Q ss_pred ecc-cchhHHHHHHHhhccCCCCcEEEec
Q 006149 597 NHL-FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 597 ~~l-~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
.++ ....+.+.+.++| +++|.+...
T Consensus 123 ~~~~~~~~~l~~~~~~L---~~gG~l~i~ 148 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLL---KPGGILFFS 148 (224)
T ss_pred HhCCCHHHHHHHHHHhc---CCCcEEEEE
Confidence 122 2345667888889 999977653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.64 E-value=2 Score=47.01 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=72.4
Q ss_pred ceeEEEeCCCCCCeeEEEEEEEeCCCCCC--------CCcccEEEEEeeCCCccccccC-ChhhH----HHHHHhcCCCE
Q 006149 292 CRFELILGGEGDFCFSYRAVLLDARENSG--------PFMYNCGVFIVPKTRAHEWLFS-SEEGQ----WLVVESSKAAR 358 (659)
Q Consensus 292 ~~~~~~l~~~~~~~~~y~~~v~D~~~~~~--------~~~~~~a~fiVP~gre~ewlfs-t~eG~----~~l~~sa~~~R 358 (659)
|.+++++.....+.+.|++.++|+|..+. ..+--+||++|+- +..||==+ ..+|| --|+...|.+.
T Consensus 69 rGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a-~~~efE~g~~~~gQtrEH~~La~tlGi~~ 147 (428)
T COG5256 69 RGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDA-RDGEFEAGFGVGGQTREHAFLARTLGIKQ 147 (428)
T ss_pred cceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEEC-CCCccccccccCCchhHHHHHHHhcCCce
Confidence 55888888766677778888999998652 2223478777764 33443222 22332 35788889999
Q ss_pred EEEEEeCCCCC---CCchHHHHHhhhHHHHhcCCCCCCCCCCccEEec----CCCcceee
Q 006149 359 LIMVLLDTSHA---SASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMA----GDGIKHRN 411 (659)
Q Consensus 359 li~v~l~~~~~---~~~~~~v~~el~~~v~~l~p~~~~~~~~ip~l~~----~~~i~~r~ 411 (659)
||+..---+-. -+-.++|+++++.++..+ .-. ..+|||+-+ |+++..+.
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~-G~~---~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMV-GYN---PKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHHHHHHHHHc-CCC---ccCCeEEecccccCCcccccC
Confidence 99987433322 223689999999965554 222 125665542 67777666
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.56 E-value=2.1 Score=46.23 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=74.0
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCCCC-CCCcccEEEeccccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQF-MDETFDVILDKGGLD 145 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~-~~~i~~~~~D~~~l~~-~~~sFDvVi~~g~l~ 145 (659)
..+|||.=+|+|.=+...+.. +...|+.-|+|+.+++-+++....+ ..+...+..|+..+-. ....||+|= +|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID----iD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID----ID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe----cC
Confidence 679999999999988777765 4448999999999999887666555 3455666677766522 136799873 56
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
-+.++. .++....+.++.||++.+.-
T Consensus 129 PFGSPa-------PFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFGSPA-------PFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCCc-------hHHHHHHHHhhcCCEEEEEe
Confidence 666665 78888999999999876643
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=87.48 E-value=3.2 Score=41.88 Aligned_cols=40 Identities=20% Similarity=0.040 Sum_probs=35.1
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~ 583 (659)
..+||++|-|-|--+.+|..+ +.+|++||+.|..++.|.+
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~ 74 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFA 74 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHH
Confidence 469999999999999999986 3689999999999997643
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.31 E-value=1.4 Score=47.20 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=54.9
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChh-HHHHHHhh-cCCC--------CCCCeeEE------eccc---chh
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLT-MLNLAEDY-FGFT--------QDKSLKVF------NHLF---CLQ 603 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~-V~~vA~~~-Fgl~--------~d~rl~vf------~~l~---~~~ 603 (659)
.-.+=+|+|.|.+.+.|..+||. |+.|+.|.. |++.|..+ .|.. +-|.-+++ .|+. ...
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvk 256 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVK 256 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHH
Confidence 45677999999999999999987 788888855 55555555 2311 11222333 4553 678
Q ss_pred HHHHHHHhhccCCCCcEE--EecCch
Q 006149 604 LEEDVNLVLFGLSSESCI--KDNSFP 627 (659)
Q Consensus 604 f~~~~~~~Lf~~~~~g~~--~~n~~~ 627 (659)
|...|+..| .|+|.+ +.|..+
T Consensus 257 iLknC~~sL---~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 257 ILKNCKKSL---PPGGKIIVVENVTP 279 (342)
T ss_pred HHHHHHHhC---CCCCEEEEEeccCC
Confidence 999999999 999955 346544
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=87.21 E-value=3.9 Score=43.11 Aligned_cols=94 Identities=21% Similarity=0.297 Sum_probs=60.7
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC------CCCCCcccEE
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM------QFMDETFDVI 138 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l------~~~~~sFDvV 138 (659)
.++.+||..|||. |..+..+++. |. +|++++.++...+.+++ . + +..+..+-... ......+|+|
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~-~---g--~~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE-L---G--ADEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH-h---C--CCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 4678999988873 6777777775 65 79999999987776533 2 1 11111111110 1234578988
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++.... ...+.++.+.|+++|+++.....
T Consensus 237 id~~g~-------------~~~~~~~~~~l~~~G~~v~~g~~ 265 (338)
T cd08254 237 FDFVGT-------------QPTFEDAQKAVKPGGRIVVVGLG 265 (338)
T ss_pred EECCCC-------------HHHHHHHHHHhhcCCEEEEECCC
Confidence 853211 15688889999999999987653
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=87.11 E-value=3.1 Score=42.04 Aligned_cols=40 Identities=20% Similarity=0.069 Sum_probs=34.9
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~ 583 (659)
..+||++|-|-|.-+.+|..+ +.+|++||+.|.-++-|.+
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~ 77 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFA 77 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHH
Confidence 469999999999999999986 4689999999999987643
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.79 E-value=2.2 Score=45.63 Aligned_cols=112 Identities=16% Similarity=0.101 Sum_probs=76.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHH-------HHhhc---CCCCcEEEEeecCCCCCC-CCcc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML-------RRNVR---DRSDMRWRVMDMTSMQFM-DETF 135 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~-------~~~~~---~~~~i~~~~~D~~~l~~~-~~sF 135 (659)
.+++-|+|.--|||.+....+..|. -|+|.||+-.++...+ ..+.+ ...-+.++.+|..+.++. ...|
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f 285 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF 285 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence 6899999999999999988888876 8999999987665211 11111 112367788999887653 4689
Q ss_pred cEEEeccccc------------------------ccCCcccc--hHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 136 DVILDKGGLD------------------------ALMEPELG--HKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 136 DvVi~~g~l~------------------------~l~~~~~~--~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|.|+|-.... |++....- ...+...+.-+.+.|..||++++.-.
T Consensus 286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 9999743221 11111000 01267788888999999999998764
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.77 E-value=1.7 Score=48.16 Aligned_cols=115 Identities=13% Similarity=-0.000 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCcchHHH--HHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC--CCCCC-CcccEE
Q 006149 67 SPPPQILVPGCGNSRLSE--HLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS--MQFMD-ETFDVI 138 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~--~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~--l~~~~-~sFDvV 138 (659)
...+.++|+|.|.|.-.- .+...+ ...++.||-|..|........+... ..+.....-+.+ +|.+. ..||+|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 345788888887665443 222232 4579999999999886644333211 111111111221 24333 459999
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
++.+.++.+.+.. ......-..|.+..++||.++++.-+..--
T Consensus 279 i~ah~l~~~~s~~---~R~~v~~s~~r~~~r~g~~lViIe~g~~~g 321 (491)
T KOG2539|consen 279 ICAHKLHELGSKF---SRLDVPESLWRKTDRSGYFLVIIEKGTTMG 321 (491)
T ss_pred EeeeeeeccCCch---hhhhhhHHHHHhccCCCceEEEEecCCccc
Confidence 9999999987655 234455667888899999999999775443
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.56 E-value=2.2 Score=49.42 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=64.4
Q ss_pred CeEEEECCCcchHHHHHHHc----CC-CeEEEEcCCHHHHHHHHHH--hh-cC-------CCCcEEEEeecCCCCCCC--
Q 006149 70 PQILVPGCGNSRLSEHLYDA----GF-HGITNVDFSKVVISDMLRR--NV-RD-------RSDMRWRVMDMTSMQFMD-- 132 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~----g~-~~VtgvD~S~~~i~~~~~~--~~-~~-------~~~i~~~~~D~~~l~~~~-- 132 (659)
..|+.+|+|-|-+.....+. +. -+|++|+-++.++...+.+ +. .. +..|+++..||.....+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36999999999986544432 32 3799999996533222222 21 12 345899999999974331
Q ss_pred ---------CcccEEEecccccccCCcccchHHHHHHHHHHHhcccc----CeE
Q 006149 133 ---------ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS----GGK 173 (659)
Q Consensus 133 ---------~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkp----GG~ 173 (659)
+.+|+|++. .|..+.+.+.. ...|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELS----PECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELS----PECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCC----HHHHHHHHHhhhhhcccccc
Confidence 379999974 45556666643 3667777777765 675
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.47 E-value=1 Score=47.72 Aligned_cols=82 Identities=24% Similarity=0.311 Sum_probs=61.2
Q ss_pred CCCeEEEEccC-cchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC---CCC---ee-------------EEeccc
Q 006149 541 KSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ---DKS---LK-------------VFNHLF 600 (659)
Q Consensus 541 ~~~~vLiiGlG-gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~---d~r---l~-------------vf~~l~ 600 (659)
...+|||+|.| -|.+.....+.+.-.+|.++|+++.=+++||+ ||... +.. .+ .++..|
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~ 247 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF 247 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence 34689999999 89999999999988899999999999999999 99862 111 10 122222
Q ss_pred -chhHHHHHHHhhccCCCCcEEEe
Q 006149 601 -CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 601 -~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+.-+.--++.++.|++.+|.++.
T Consensus 248 dCsG~~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 248 DCSGAEVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred EccCchHHHHHHHHHhccCCEEEE
Confidence 34444566777888899997544
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=85.89 E-value=2.2 Score=45.18 Aligned_cols=72 Identities=13% Similarity=0.215 Sum_probs=51.1
Q ss_pred cceecCCc-c---chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHH
Q 006149 506 QLKVYHGY-L---ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLA 581 (659)
Q Consensus 506 ~~~~d~~~-L---~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA 581 (659)
.+.+||+. . .++=+++++..+. ... ....+||=+|-|.|.|+......... +|.+|||||.-++.|
T Consensus 131 ~I~idPg~AFGTG~H~TT~lcl~~l~---~~~------~~g~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a 200 (295)
T PF06325_consen 131 VIEIDPGMAFGTGHHPTTRLCLELLE---KYV------KPGKRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAA 200 (295)
T ss_dssp EEEESTTSSS-SSHCHHHHHHHHHHH---HHS------STTSEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHH
T ss_pred EEEECCCCcccCCCCHHHHHHHHHHH---Hhc------cCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHH
Confidence 46688743 2 2445555544322 211 23469999999999999999987654 899999999999999
Q ss_pred HhhcCC
Q 006149 582 EDYFGF 587 (659)
Q Consensus 582 ~~~Fgl 587 (659)
++-.-+
T Consensus 201 ~~N~~~ 206 (295)
T PF06325_consen 201 RENAEL 206 (295)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988743
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=85.87 E-value=6.3 Score=36.95 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=53.7
Q ss_pred eEEEECCCcch---HHHHHHHcCCCeEEEEcCC--HHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCcc
Q 006149 71 QILVPGCGNSR---LSEHLYDAGFHGITNVDFS--KVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDETF 135 (659)
Q Consensus 71 ~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S--~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~sF 135 (659)
.+|-.|+++|. ++..|++.|...|+.+.-+ ....+.........+.++.++.+|+.+.. -..+.+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~l 81 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPL 81 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67888888662 4566666766688999988 66666665655556688999999988752 123679
Q ss_pred cEEEecccccc
Q 006149 136 DVILDKGGLDA 146 (659)
Q Consensus 136 DvVi~~g~l~~ 146 (659)
|+++.......
T Consensus 82 d~li~~ag~~~ 92 (167)
T PF00106_consen 82 DILINNAGIFS 92 (167)
T ss_dssp SEEEEECSCTT
T ss_pred ccccccccccc
Confidence 99997655544
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.64 E-value=4 Score=43.82 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=57.2
Q ss_pred CCCCeEEEECCCcch-HHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSR-LSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~-~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++++||.+|||.=. ++..+++. |..+|+++|.++.-++.+++ + . . .... + ++. ....+|+|++.-.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~-~-~~~~-~--~~~-~~~g~d~viD~~G 231 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D-E-TYLI-D--DIP-EDLAVDHAFECVG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C-c-eeeh-h--hhh-hccCCcEEEECCC
Confidence 468899999997533 33455553 45589999999876665432 1 1 1 1111 1 111 1124899986332
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
-. . ....+....+.|++||++++....
T Consensus 232 ~~-----~-----~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 232 GR-----G-----SQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred CC-----c-----cHHHHHHHHHhCcCCcEEEEEeec
Confidence 11 0 125688889999999999987653
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=85.05 E-value=3 Score=44.36 Aligned_cols=94 Identities=18% Similarity=0.266 Sum_probs=58.2
Q ss_pred CCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe---ecCCCCCCCCcccEEEecc
Q 006149 68 PPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM---DMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~---D~~~l~~~~~sFDvVi~~g 142 (659)
++.+||..|||. |..+..+++. |...|++++.++...+.+. ... .. .++.. +........+.+|+|++..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~-~~g--~~--~vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR-AMG--AD--ETVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HcC--CC--EEEcCCchhhhhhhccCCCccEEEECC
Confidence 678999999876 6666667665 6657999999987776432 221 11 11111 1111111223589998642
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.. ...++.+.+.|+++|+++....
T Consensus 240 g~-------------~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 240 GA-------------PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred CC-------------HHHHHHHHHHHhcCCEEEEEec
Confidence 21 1457888899999999987653
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=84.98 E-value=7.7 Score=38.86 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=29.6
Q ss_pred CCeEEEEccCcchHHHHHHhhC-CCccEEEEecCh
Q 006149 542 SVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDL 575 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp 575 (659)
..+||=||.|.|.....+.+.. +..+|++||++|
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 4589999999999999998876 456999999997
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=84.42 E-value=2.4 Score=44.48 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=29.1
Q ss_pred CCCeEEEEccCcchHHHHHH--hhCCCccEEEEecChhHHHHHHhhcC
Q 006149 541 KSVKAVVIGLGAGLLPMFLH--ECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~--~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
.|.+|+.||.|.==|...+. .+.+.+.++++|+||+-+++|++-..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~ 167 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVA 167 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh
Confidence 57899999988544444433 36788899999999999999998765
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.02 E-value=1.8 Score=43.74 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=36.1
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+||-+|.|.|.+...+.... ..++++||+||..++.|++.+
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~ 79 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNA 79 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHH
Confidence 589999999999998888753 348999999999999888754
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=83.99 E-value=1.7 Score=46.04 Aligned_cols=112 Identities=19% Similarity=0.184 Sum_probs=76.7
Q ss_pred CCeEEEECCCcchHHHHHHHcC-------C--------------CeEEEEcCCH--HHHHHHHHHhhcC-----------
Q 006149 69 PPQILVPGCGNSRLSEHLYDAG-------F--------------HGITNVDFSK--VVISDMLRRNVRD----------- 114 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g-------~--------------~~VtgvD~S~--~~i~~~~~~~~~~----------- 114 (659)
..+||-||-|.|.-...++..- . -+|+.||+.+ .+++.........
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4699999999986554443310 0 2799999986 6666654443322
Q ss_pred -------CCCcEEEEeecCCCCCCC-------CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 115 -------RSDMRWRVMDMTSMQFMD-------ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 115 -------~~~i~~~~~D~~~l~~~~-------~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.-+++|.+.|+..+..++ ...++|...+++.-+.... ...-.++|..+...++||-.+++++-.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s--~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTS--ISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcC--hHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 125789999998885322 2467777777776554332 233668999999999999999998865
Q ss_pred Cc
Q 006149 181 ES 182 (659)
Q Consensus 181 ~~ 182 (659)
..
T Consensus 245 GS 246 (315)
T PF11312_consen 245 GS 246 (315)
T ss_pred CC
Confidence 43
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.91 E-value=3 Score=45.10 Aligned_cols=91 Identities=12% Similarity=0.147 Sum_probs=56.9
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc---------CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA---------GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~---------g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~ 126 (659)
.+.+.++....+.+..++|+|.|.|.++..+... ...++.-|++|+.....-++........+.+.. ..
T Consensus 65 ~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~~~~~~~~--~~ 142 (370)
T COG1565 65 QFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATEDLIRWVE--WV 142 (370)
T ss_pred HHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccccchhHHH--HH
Confidence 3444444323345678999999999999887663 135899999999888766555543322222221 11
Q ss_pred CCCCCCCcccEEEecccccccCC
Q 006149 127 SMQFMDETFDVILDKGGLDALME 149 (659)
Q Consensus 127 ~l~~~~~sFDvVi~~g~l~~l~~ 149 (659)
+ .++.+-.-+|+++..+|+++.
T Consensus 143 e-~~p~~~~~i~~~NElfDAlPv 164 (370)
T COG1565 143 E-DLPKKFPGIVVSNELFDALPV 164 (370)
T ss_pred H-hccccCceEEEechhhccccc
Confidence 1 233343567778899998863
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=83.74 E-value=7.7 Score=42.09 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=58.6
Q ss_pred eEEEEccC-cchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC--CCC-C---------------ee-EEecccchh
Q 006149 544 KAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDK-S---------------LK-VFNHLFCLQ 603 (659)
Q Consensus 544 ~vLiiGlG-gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~--~d~-r---------------l~-vf~~l~~~~ 603 (659)
+|+|+|.| -|.+.-.+.+.+.-.+|.++|+++.=+++|++++|.. .++ . .| +|+-.-...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 89999999 8888888888888889999999999999999999766 111 1 12 233334445
Q ss_pred HHHHHHHhhccCCCCcEEEecC
Q 006149 604 LEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 604 f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+.+-.++ +++|.++.-.
T Consensus 251 ~~~~ai~~~---r~gG~v~~vG 269 (350)
T COG1063 251 ALDQALEAL---RPGGTVVVVG 269 (350)
T ss_pred HHHHHHHHh---cCCCEEEEEe
Confidence 555555556 9999777644
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.54 E-value=3.1 Score=43.31 Aligned_cols=94 Identities=18% Similarity=0.085 Sum_probs=56.1
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE-ee----cCCCCCCCCcccEEE
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV-MD----MTSMQFMDETFDVIL 139 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~-~D----~~~l~~~~~sFDvVi 139 (659)
.++.+||-+|+|. |.++..+++. |...|+++|.++.-++.+++.- .. .++. .+ +..+ .....+|+|+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~G----a~-~~i~~~~~~~~~~~~-~~~~g~d~vi 192 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFG----AT-ALAEPEVLAERQGGL-QNGRGVDVAL 192 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC----Cc-EecCchhhHHHHHHH-hCCCCCCEEE
Confidence 4678999998864 3344555554 7656999999987665443321 11 1110 00 0111 1223589988
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.-. . ...+....+.|+++|++++...
T Consensus 193 d~~G-----~--------~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 193 EFSG-----A--------TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ECCC-----C--------hHHHHHHHHHhcCCCEEEEecc
Confidence 5321 1 1557888899999999998874
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=83.20 E-value=3.8 Score=46.12 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=51.0
Q ss_pred CCeEEEEccCcchHHHHHHhhC----CCccEEEEecChhHHHHHHh---hcCCCCCCCe----------------eEE-e
Q 006149 542 SVKAVVIGLGAGLLPMFLHECM----PFVGIEAVELDLTMLNLAED---YFGFTQDKSL----------------KVF-N 597 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~----p~~~i~~VEiDp~V~~vA~~---~Fgl~~d~rl----------------~vf-~ 597 (659)
.+.||+||.|-|.|.++..+.. ...+|.+||-+|.-+...++ .=++ ++++ |+. .
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w--~~~V~vi~~d~r~v~lpekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW--GDKVTVIHGDMREVELPEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT--TTTEEEEES-TTTSCHSS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC--CCeEEEEeCcccCCCCCCceeEEEE
Confidence 4679999999999999887654 35699999999975544322 2233 2233 444 1
Q ss_pred cc--------cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 HL--------FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l--------~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
++ ...+......+.| +|+|++..+.
T Consensus 265 ElLGsfg~nEl~pE~Lda~~rfL---kp~Gi~IP~~ 297 (448)
T PF05185_consen 265 ELLGSFGDNELSPECLDAADRFL---KPDGIMIPSS 297 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGE---EEEEEEESSE
T ss_pred eccCCccccccCHHHHHHHHhhc---CCCCEEeCcc
Confidence 11 2234556667778 9999998876
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=83.17 E-value=2.1 Score=45.91 Aligned_cols=42 Identities=24% Similarity=0.181 Sum_probs=37.8
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||=||.|.|.+...|... +.+|++||+++.++++|++.+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~ 186 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRA 186 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH
Confidence 469999999999999999876 468999999999999998875
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.01 E-value=1.1 Score=49.94 Aligned_cols=100 Identities=16% Similarity=0.225 Sum_probs=74.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC----CCCCCcccEEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM----QFMDETFDVIL 139 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l----~~~~~sFDvVi 139 (659)
++.+|||.=|++|.-++..+.. |..+|++-|.++.+++..++....+. ..+....+|+..+ +-....||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 4679999999999999888776 56789999999999986644432222 3355666776543 23357899985
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
||-+..+. .+|..+.+.++.||.+++..
T Consensus 189 ----LDPyGs~s-------~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 ----LDPYGSPS-------PFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ----cCCCCCcc-------HHHHHHHHHhhcCCEEEEEe
Confidence 56555554 88999999999999988764
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=82.88 E-value=2.9 Score=38.59 Aligned_cols=42 Identities=7% Similarity=-0.047 Sum_probs=38.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR 109 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~ 109 (659)
.+.+|+|||.+-|..++.++-.|...|++++.++...+.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHH
Confidence 578999999999999999999999999999999988887755
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.74 E-value=4.1 Score=41.38 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=59.0
Q ss_pred HHHHHHHHhhCCC---CCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEe
Q 006149 52 QLRDPLISLIGAP---TSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVM 123 (659)
Q Consensus 52 ~l~~~l~~~l~~~---~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~~~ 123 (659)
++...+..+|... .+.++.++||||.|....--.+--+ |+ +.+|.|+++..++.++.....+. ..++....
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~q 137 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQ 137 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEec
Confidence 4444566666541 1345679999999876654444333 66 89999999999998866554331 12343322
Q ss_pred -ecCCC---CC-CCCcccEEEeccccccc
Q 006149 124 -DMTSM---QF-MDETFDVILDKGGLDAL 147 (659)
Q Consensus 124 -D~~~l---~~-~~~sFDvVi~~g~l~~l 147 (659)
|-..+ -. .++.||+++|+..+|..
T Consensus 138 k~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 138 KDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred cCccccccccccccceeeeEecCCCcchh
Confidence 11111 11 25789999999988864
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.48 E-value=4.7 Score=40.31 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=56.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-------------------CCCeeEE-----
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-------------------DKSLKVF----- 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-------------------d~rl~vf----- 596 (659)
....+|-+|-|.|+-=+|.-- -|..+||++|.+|.+-++|.+-|--.. |..+|+.
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred CccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 446789999999987776543 367899999999999999988763221 1112332
Q ss_pred --ecccchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 --NHLFCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 --~~l~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.+=...+....++++| +|+|.+..
T Consensus 155 LCSve~~~k~L~e~~rlL---RpgG~iif 180 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLL---RPGGRIIF 180 (252)
T ss_pred EeccCCHHHHHHHHHHhc---CCCcEEEE
Confidence 1223456677899999 99997754
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.18 E-value=2.4 Score=44.08 Aligned_cols=45 Identities=20% Similarity=0.427 Sum_probs=40.8
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhh
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~ 584 (659)
-.+..+|=+|-|.|+++.++.+.+|+.++++||..++-+.+|.+-
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN 191 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKEN 191 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHH
Confidence 344579999999999999999999999999999999999999764
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.68 E-value=2.1 Score=45.03 Aligned_cols=46 Identities=28% Similarity=0.317 Sum_probs=39.6
Q ss_pred CeEEEEccC--cchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC
Q 006149 543 VKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ 589 (659)
Q Consensus 543 ~~vLiiGlG--gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~ 589 (659)
.+|+|+|+| ||+++++|+.......|..+|.+..-.+.| ..+|+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-~~lgv~d 51 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-LELGVID 51 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-hhcCccc
Confidence 689999999 999999999999888888888888877777 5677754
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=81.57 E-value=6.3 Score=42.44 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=56.0
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcC---CHHHHHHHHHHhhcCCCCcEEEEeecCCCC----CCCCcccE
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDF---SKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----FMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~---S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----~~~~sFDv 137 (659)
.++.+||.+|||. |.++..+++. |. +|++++. ++.-++.++ .. + ..++ +..+.+ ...+.||+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~-~~---G--a~~v--~~~~~~~~~~~~~~~~d~ 241 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVE-EL---G--ATYV--NSSKTPVAEVKLVGEFDL 241 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHH-Hc---C--CEEe--cCCccchhhhhhcCCCCE
Confidence 4678999999875 4455666665 66 7999986 565554332 22 1 1221 111111 01246898
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|++.-. . ...+....+.|++||++++....
T Consensus 242 vid~~g-----~--------~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 242 IIEATG-----V--------PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred EEECcC-----C--------HHHHHHHHHHccCCcEEEEEecC
Confidence 886432 1 14678889999999999887654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=81.08 E-value=10 Score=40.88 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=57.0
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCccc
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (659)
.++.+||..|||. |..+..+++. |...|+++|.++.-.+.+++ . +.. .++ |..+.. .....+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~-~---Ga~-~~i--~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE-F---GAT-HTV--NSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-c---CCc-eEE--cCCCcCHHHHHHHHhCCCCCC
Confidence 5688999999864 3445556655 66569999999877665532 2 111 111 111110 1223589
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+|++.-. . ...+....+.|++||++++...
T Consensus 248 ~vid~~g-----~--------~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 248 VVIDAVG-----R--------PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEEECCC-----C--------HHHHHHHHHHhccCCEEEEECC
Confidence 9985321 1 1456777889999999988764
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=80.99 E-value=2.3 Score=52.58 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=39.8
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||=||-|.|.++..+...+|..++++|||+|..+++|++=.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL 162 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 35899999999999999999999889999999999999996443
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=80.83 E-value=2.7 Score=44.38 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=50.4
Q ss_pred eEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC---CCCCcccEEEeccc
Q 006149 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---FMDETFDVILDKGG 143 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~---~~~~sFDvVi~~g~ 143 (659)
+++|+-||-|.++.-|...|+..+.++|+++.+++...... + ...+.|+.++. ++. .+|+++....
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~----~--~~~~~Di~~~~~~~l~~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF----P--EVICGDITEIDPSDLPK-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH----T--EEEESHGGGCHHHHHHH-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc----c--ccccccccccccccccc-cceEEEeccC
Confidence 78999999999999999999888999999998887553333 3 88899999884 443 5999986443
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=80.82 E-value=4.5 Score=37.31 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh
Q 006149 513 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 513 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~ 583 (659)
-|.|.|-+-....-.++. =..++|+.||.+-|.-|-|.....-. .|.++|.+|...++.++
T Consensus 9 ~~~c~ywrey~~~Y~~id---------vk~KtV~dIGA~iGdSaiYF~l~GAK-~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 9 KLECDYWREYPHAYGMLN---------VYQRTIQIVGADCGSSALYFLLRGAS-FVVQYEKEEKLRKKWEE 69 (156)
T ss_pred HccchHHHHHHHHhhhee---------ecCCEEEEecCCccchhhHHhhcCcc-EEEEeccCHHHHHHHHH
Confidence 367888777665544432 23478999999999999888877654 89999999999998875
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=80.43 E-value=6.4 Score=39.97 Aligned_cols=108 Identities=15% Similarity=0.231 Sum_probs=66.8
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhcCCCC-CCCe--------------------e---
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQ-DKSL--------------------K--- 594 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~Fgl~~-d~rl--------------------~--- 594 (659)
-+|+++|.||.=.|--+--.....| .-++.++|||+.-.+++.++-.+.. +..+ .
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 3578999999864433333333344 5799999999999999988764431 1222 1
Q ss_pred -EE----ecccchhHHHHHHHhhccCCCCcEEEecC--chHHHHHHHhhcc--CCccccchhHH---HHHHHhhh
Q 006149 595 -VF----NHLFCLQLEEDVNLVLFGLSSESCIKDNS--FPEAAVQLGKLVK--FQHLEISQSIM---DAAKKIRC 657 (659)
Q Consensus 595 -vf----~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~--~~~~~~~l~~~~~--f~~~~~~~~~~---~~~~~~~~ 657 (659)
+| ...|. .+|+.+-+.| +++|+++++. |+.. +.. +.-++++..+- ++-|||.+
T Consensus 152 faFvDadK~nY~-~y~e~~l~Ll---r~GGvi~~DNvl~~G~------v~~p~~~~~~~~~~~r~~~~~n~~l~~ 216 (237)
T KOG1663|consen 152 FAFVDADKDNYS-NYYERLLRLL---RVGGVIVVDNVLWPGV------VADPDVNTPVRGRSIREALNLNKKLAR 216 (237)
T ss_pred EEEEccchHHHH-HHHHHHHhhc---ccccEEEEeccccCCc------ccCcccCCCcchhhhhhhhhhhhHhcc
Confidence 22 12334 7888888899 9999887744 4441 112 33344555555 55555543
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.11 E-value=15 Score=37.11 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=53.1
Q ss_pred CCCeEEEECCCcc---hHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----C-----CCCc
Q 006149 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----F-----MDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G---~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----~-----~~~s 134 (659)
.+.++|..|++.| .++..|++.|+ +|+.++.++..++...+.......++.++.+|+.+.. + .-+.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 3578999998765 24466666787 8999999987777665554444456788889988742 0 0147
Q ss_pred ccEEEeccccc
Q 006149 135 FDVILDKGGLD 145 (659)
Q Consensus 135 FDvVi~~g~l~ 145 (659)
.|+++.+....
T Consensus 87 id~lv~~ag~~ 97 (253)
T PRK05867 87 IDIAVCNAGII 97 (253)
T ss_pred CCEEEECCCCC
Confidence 89988765443
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=80.05 E-value=2.6 Score=46.37 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=60.2
Q ss_pred cCCHHHHHHHH-HHhhcCCCCcEEEEeecCCC--CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEE
Q 006149 98 DFSKVVISDML-RRNVRDRSDMRWRVMDMTSM--QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 174 (659)
Q Consensus 98 D~S~~~i~~~~-~~~~~~~~~i~~~~~D~~~l--~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~l 174 (659)
+..|..+..-. +..+...++++++.+++.+. ..+++++|.++.....+++.+.. +.+.++++.+.++|||++
T Consensus 256 ~~~P~YL~~e~f~~lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~-----~~~~~~~l~~~~~pgaRV 330 (380)
T PF11899_consen 256 DCCPPYLRPENFEALRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQ-----LNEEWQELARTARPGARV 330 (380)
T ss_pred CCCChhhcHhHHHHHhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHH-----HHHHHHHHHHHhCCCCEE
Confidence 55554443211 22223347899999999886 35689999999999999986644 789999999999999999
Q ss_pred EEEEcCCc
Q 006149 175 VCLTLAES 182 (659)
Q Consensus 175 vi~~~~~~ 182 (659)
+.-+.+.+
T Consensus 331 ~~Rsa~~~ 338 (380)
T PF11899_consen 331 LWRSAAVP 338 (380)
T ss_pred EEeeCCCC
Confidence 99998744
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 659 | ||||
| 2pxx_A | 215 | Human Putative Methyltransferase Mgc2408 Length = 2 | 6e-22 |
| >pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408 Length = 215 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 659 | |||
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 8e-51 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 6e-15 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 8e-14 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 1e-13 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 1e-13 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 1e-13 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 1e-12 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 2e-12 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 3e-12 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 5e-12 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 2e-11 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 2e-11 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 4e-11 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 2e-10 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 2e-10 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 2e-10 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 2e-10 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 3e-10 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 7e-10 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 1e-09 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 1e-09 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 2e-09 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 2e-09 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 2e-09 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 3e-09 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 3e-09 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 5e-09 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 6e-09 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 6e-09 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 8e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-08 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 1e-08 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 1e-08 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 2e-08 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-08 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 2e-08 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 3e-08 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 4e-08 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 4e-08 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 7e-08 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 9e-08 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 1e-07 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 3e-07 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 6e-07 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 9e-07 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 1e-06 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 3e-06 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 4e-06 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 1e-05 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 1e-05 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 1e-05 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 1e-05 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 1e-05 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 2e-05 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 4e-05 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 4e-05 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 2e-04 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 5e-04 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 9e-04 |
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 8e-51
Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 20/207 (9%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+ E WD+ + ++W+ ++ R L + P +ILV GCGNS LS
Sbjct: 3 GYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPEL-----RPEDRILVLGCGNSALS 57
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
L+ GF +T+VD+S VV++ M +RW MD+ + F +FDV+L+KG
Sbjct: 58 YELFLGGFPNVTSVDYSSVVVAAMQACY-AHVPQLRWETMDVRKLDFPSASFDVVLEKGT 116
Query: 144 LDALMEPELGHKLG--------NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFG 195
LDAL+ E +Q LSEV R+L GG+F+ +T A H + + +G
Sbjct: 117 LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYG 176
Query: 196 WKMSVHAIPQKSSSEPSLQTFMVVADK 222
W + + + K
Sbjct: 177 WSLRHATY------GSGFHFHLYLMHK 197
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 6e-15
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 14/136 (10%)
Query: 45 EWYAEW----PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFS 100
DP LI + IL G G R + HL G I ++ +
Sbjct: 14 FDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQ-IEGLEPA 72
Query: 101 KVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQY 160
+ ++ + + + +T + + + +L L + EL
Sbjct: 73 ----TRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELP-----DA 123
Query: 161 LSEVKRLLKSGGKFVC 176
L ++ ++ GG +
Sbjct: 124 LVALRMAVEDGGGLLM 139
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 8e-14
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 15/139 (10%)
Query: 43 SFEWYAE-WPQLRDPLISLIGAPT---SSPPP--QILVPGCGNSRLSEHLYDAGFHGITN 96
E YA+ W L + G + P +IL GCG R+ +L G +
Sbjct: 15 HSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQGHD-VLG 73
Query: 97 VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKL 156
D ++ +D + RW V D++ Q + FD+I+ G + + +
Sbjct: 74 TDLD----PILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPA 129
Query: 157 GNQYLSEVKRLLKSGGKFV 175
L+ + R L + G+ V
Sbjct: 130 ----LANIHRALGADGRAV 144
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 1e-13
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 23/174 (13%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+ + + F +S E+ + L L+ + ++L CG S L D
Sbjct: 4 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYM-----KKRGKVLDLACGVGGFSFLLED 58
Query: 89 AGFHGITNVDFSKVVISDML---RRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGL 144
GF + VD S+ DM+ R + R S++ + V D + F D+TFD ++ +
Sbjct: 59 YGFE-VVGVDISE----DMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 113
Query: 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKM 198
EL NQ EV+R+LK GKF+ L L P+ + +
Sbjct: 114 VHFEPLEL-----NQVFKEVRRVLKPSGKFIMYF----TDLRELLPRLKESLVV 158
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 1e-13
Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 14/163 (8%)
Query: 20 QTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGN 79
+ + F E+ +K + + W I ++L GCG+
Sbjct: 5 ECMTKFNWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGD 64
Query: 80 SRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQFMDETFDV 137
+ L G+ VD S M++ + + D+ + D++S+ F +E F+
Sbjct: 65 GYGTYKLSRTGYK-AVGVDIS----EVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEA 119
Query: 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
I+ L+ EP + L+E+KR+LKS G L
Sbjct: 120 IMAINSLEWTEEPL-------RALNEIKRVLKSDGYACIAILG 155
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 1e-13
Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 18/155 (11%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL 86
+ W+K + W ++ L+ +S P + LVPGCG +
Sbjct: 32 EEGGWEKCWEEEITP----WDQGRAT--PLIVHLVDT-SSLPLGRALVPGCGGGHDVVAM 84
Query: 87 YDAGFHGITNVDFSKVVISDMLRRNVRDRS---DMRWRVMDMTSMQFMDETFDVILDKGG 143
+ +D S+ + + D+ + + E FD+I D
Sbjct: 85 ASPERF-VVGLDISESAL-AKANETYGSSPKAEYFSFVKEDVFTWRP-TELFDLIFDYVF 141
Query: 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178
A+ + + + LLK G+ + L
Sbjct: 142 FCAIEPE-----MRPAWAKSMYELLKPDGELITLM 171
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 1e-12
Identities = 30/132 (22%), Positives = 43/132 (32%), Gaps = 14/132 (10%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
YAE L +G +IL GCG +E + AGF + D S
Sbjct: 22 TAYAERQPRSATLTKFLGEL--PAGAKILELGCGAGYQAEAMLAAGFD-VDATDGSP--- 75
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164
++ R R M + + +D + L + EL L +
Sbjct: 76 -ELAAE-ASRRLGRPVRTMLFHQLDA-IDAYDAVWAHACLLHVPRDELA-----DVLKLI 127
Query: 165 KRLLKSGGKFVC 176
R LK GG F
Sbjct: 128 WRALKPGGLFYA 139
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 2e-12
Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 24/157 (15%)
Query: 31 WDKFFTIRGIGDSFE---WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLY 87
WD+ F+ E + P +IL G R + L
Sbjct: 2 WDERFSQSEYVYGTEPNDFLVSVANQI-------------PQGKILCLAEGEGRNACFLA 48
Query: 88 DAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147
G+ +T VD S V ++ + + ++ + + ++ I+ +
Sbjct: 49 SLGYE-VTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVS---IFCH 104
Query: 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184
+ L + +V + LK GG F+ A +
Sbjct: 105 LPSSLRQQ----LYPKVYQGLKPGGVFILEGFAPEQL 137
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 3e-12
Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 32/174 (18%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
++++F + F + +E ++ L P + + G G R + L
Sbjct: 22 NEYERWFLVH----RFAYLSELQAVKCLL----------PEGRGVEIGVGTGRFAVPLKI 67
Query: 89 AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148
V+ S+ M R R + ++ DE+FD L + +
Sbjct: 68 K-----IGVEPSE----RMAEI-ARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVD 116
Query: 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHA 202
+PE + L E R+LK GG + + LG + K + +A
Sbjct: 117 DPE-------RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNA 163
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 5e-12
Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 11/156 (7%)
Query: 66 SSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125
S+ +L G G ++ + ++ S + + + + + D+
Sbjct: 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDI 80
Query: 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 185
+ F DE+ + G + + + ++ + + E+KR+LK GG L
Sbjct: 81 RKLPFKDESMSFVYSYGTIFHMRKNDV-----KEAIDEIKRVLKPGGLACINFLTTKD-- 133
Query: 186 GLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVAD 221
++ G K+ Q E + +++ + +
Sbjct: 134 ----ERYNKGEKIGEGEFLQLERGEKVIHSYVSLEE 165
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 2e-11
Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 23/140 (16%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR----------NVRDRSDMRWRVMDM 125
GCG+ ++S L G+ +T +D + + +R N + ++V +
Sbjct: 38 GCGSGKISLELASKGYS-VTGIDINS----EAIRLAETAARSPGLNQKTGGKAEFKVENA 92
Query: 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 185
+S+ F D +FD + + L ++ +P+ ++ + EV R+LK G +
Sbjct: 93 SSLSFHDSSFDFAVMQAFLTSVPDPKER----SRIIKEVFRVLKPGAYLYLVEF--GQNW 146
Query: 186 GLLFPKFRFGWKMSVHAIPQ 205
L + R+ +
Sbjct: 147 HLKLYRKRYLH--DFPITKE 164
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 2e-11
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 24/152 (15%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
E +D + E + + ++L CG + L +
Sbjct: 10 EYYDTIYR-----RRIERVKAEIDFVEEIFKEDAKR---EVRRVLDLACGTGIPTLELAE 61
Query: 89 AGFHGITNVDFSKVVISDML---RRNVRDRS-DMRWRVMDMTSMQFMDETFDVILDKGG- 143
G+ + +D + +ML RR ++R+ + + D+ + F FD +
Sbjct: 62 RGYE-VVGLDLHE----EMLRVARRKAKERNLKIEFLQGDVLEIAF-KNEFDAVTMFFST 115
Query: 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
+ E +L + S+V LK GG F+
Sbjct: 116 IMYFDEEDL-----RKLFSKVAEALKPGGVFI 142
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 4e-11
Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 20/153 (13%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+D F I + + ++ + +L G G L+ L
Sbjct: 14 HTYDSFVQGEDIQYKEVF-----AHYEDILEDVVNK---SFGNVLEFGVGTGNLTNKLLL 65
Query: 89 AGFHGITNVDFSKVVISDMLRR-NVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147
AG + ++ S+ +M + + D S + + D I+ L
Sbjct: 66 AGRT-VYGIEPSR----EMRMIAKEKLPKEFSITEGDFLSFEV-PTSIDTIVSTYAFHHL 119
Query: 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
+ E +++ +LL GGK V
Sbjct: 120 TDDEKN-----VAIAKYSQLLNKGGKIVFADTI 147
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125
P + L GCGN R S +L G+ + D + + I + R ++ RV+D+
Sbjct: 32 KPGKTLDLGCGNGRNSLYLAANGYD-VDAWDKNAMSI-ANVERIKSIENLDNLHTRVVDL 89
Query: 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178
++ F D +D IL L L + ++ ++R K GG + +
Sbjct: 90 NNLTF-DRQYDFILSTVVLMFLEAKTIP-----GLIANMQRCTKPGGYNLIVA 136
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 2e-10
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 14/125 (11%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127
P +L G G L G V+ S+ ML R + W +
Sbjct: 36 PGESLLEVGAGTGYWLRRLPYPQKVG---VEPSE----AMLAVGRRRAPEATWVRAWGEA 88
Query: 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGL 187
+ F E+FDV+L L+ + + E L E +R+L+ GG V L
Sbjct: 89 LPFPGESFDVVLLFTTLEFVEDVERV-------LLEARRVLRPGGALVVGVLEALSPWAA 141
Query: 188 LFPKF 192
L+ +
Sbjct: 142 LYRRL 146
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 14/128 (10%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127
P ++L G G + S L + GF + VD SK +ML R++
Sbjct: 54 NPCRVLDLGGGTGKWSLFLQERGFE-VVLVDPSK----EMLEVA-REKGVKNVVEAKAED 107
Query: 128 MQFMDETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186
+ F F+ +L G L + + SE++R+L G + L
Sbjct: 108 LPFPSGAFEAVLALGDVLSYVENKDKA-------FSEIRRVLVPDGLLIATVDNFYTFLQ 160
Query: 187 LLFPKFRF 194
+ K +
Sbjct: 161 QMIEKDAW 168
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
+ ++ Q + L+ L+ P IL GCG +L+E + +G + D +
Sbjct: 37 DKHSFVWQYGEDLLQLLNP---QPGEFILDLGCGTGQLTEKIAQSGAE-VLGTDNA---- 88
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164
+ M+ + ++ + + V D + + D+ D + L + EPE ++ +
Sbjct: 89 ATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVKEPE-------AAIASI 140
Query: 165 KRLLKSGGKFVCLTLA 180
+ LKSGG+FV
Sbjct: 141 HQALKSGGRFVAEFGG 156
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 3e-10
Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 20/152 (13%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
++++ + + + EW +L+ L +L GCG + + G
Sbjct: 14 FEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQK-------TVLDLGCGFGWHCIYAAEHG 66
Query: 91 FHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148
+ +D S ML + + + + + + ++V+L L +
Sbjct: 67 AKKVLGIDLS----ERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122
Query: 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
+ +V LKS G F+
Sbjct: 123 SFD-------DICKKVYINLKSSGSFIFSVEH 147
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 7e-10
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 20/140 (14%)
Query: 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101
+ + AEWP LR L + G +I+ GCG ++ G + +D S
Sbjct: 24 EGLDGAAEWPALRAMLPEVGGL-------RIVDLGCGFGWFCRWAHEHGASYVLGLDLS- 75
Query: 102 VVISDMLR--RNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQ 159
ML R + + + D+ + ++FD+ L + + +
Sbjct: 76 ---EKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVA-------R 125
Query: 160 YLSEVKRLLKSGGKFVCLTL 179
V + L GG FV T
Sbjct: 126 LFRTVHQALSPGGHFVFSTE 145
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 1e-09
Identities = 23/155 (14%), Positives = 57/155 (36%), Gaps = 7/155 (4%)
Query: 32 DKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF 91
D T+ +++++ ++ A P ++L GCG R S +L G+
Sbjct: 84 DLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGY 143
Query: 92 HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPE 151
+T+ D ++ I+ + ++ ++ + D+ + E +D I+ L
Sbjct: 144 D-VTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLNRER 201
Query: 152 LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186
+ + +K GG + + + +
Sbjct: 202 V-----PSIIKNMKEHTNVGGYNLIVAAMSTDDVP 231
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 1e-09
Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 37/190 (19%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENW-DKFFT-----IRGIGDSFEWYAEWPQLR 54
M + + + A LL ++G+ ++ D+ + D E+
Sbjct: 20 MSNQLERGPVRTPHADVLLASVGERGVLCDFYDEGAADTYRDLIQDADGTSEAREFATRT 79
Query: 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML------ 108
P +L G RL+ D G+ +T ++ S + +L
Sbjct: 80 GP-----------VSGPVLELAAGMGRLTFPFLDLGWE-VTALELS----TSVLAAFRKR 123
Query: 109 --RRNVRDRSDMRWRVMDMTSMQFMDETFD-VILDKGGLDALMEPELGHKLGNQYLSEVK 165
R DM++ D+ F V++ G ++ L E + + V+
Sbjct: 124 LAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADR-----RGLYASVR 177
Query: 166 RLLKSGGKFV 175
L+ GGKF+
Sbjct: 178 EHLEPGGKFL 187
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 2e-09
Identities = 28/146 (19%), Positives = 42/146 (28%), Gaps = 20/146 (13%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
+D F+ RG YA L+ SS +L CG EH
Sbjct: 12 YDLFYLGRGKD-----YAAEASDIADLVRSRTPEASS----LLDVACGTGTHLEHFTKEF 62
Query: 91 FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG-LDALME 149
++ S DML + D DM + F ++ + L
Sbjct: 63 GD-TAGLELS----EDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116
Query: 150 PELGHKLGNQYLSEVKRLLKSGGKFV 175
E ++ L+ GG V
Sbjct: 117 TEELGAA----VASFAEHLEPGGVVV 138
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 2e-09
Identities = 18/142 (12%), Positives = 41/142 (28%), Gaps = 17/142 (11%)
Query: 45 EWYAEWPQ--LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102
+ + L L +L G + HL +T +D S
Sbjct: 24 ATFVPYMDSAAPAALERLRAGN---IRGDVLELASGTGYWTRHLSGLADR-VTALDGS-- 77
Query: 103 VISDMLRR-NVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYL 161
++M+ ++ +R D+ D +D + L + + +
Sbjct: 78 --AEMIAEAGRHGLDNVEFRQQDLFDWTP-DRQWDAVFFAHWLAHVPDDRFE-----AFW 129
Query: 162 SEVKRLLKSGGKFVCLTLAESH 183
V+ + GG + + +
Sbjct: 130 ESVRSAVAPGGVVEFVDVTDHE 151
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 2e-09
Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 17/167 (10%)
Query: 39 GIGDSFEWYAE-WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNV 97
IG + ++ + +I+L+ P I G G S L + G + V
Sbjct: 7 SIGKQYSQTRVPDIRIVNAIINLLNLP---KGSVIADIGAGTGGYSVALANQGLF-VYAV 62
Query: 98 DFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLG 157
+ S M ++ + W ++ D++ D ++ + E
Sbjct: 63 EPS----IVMRQQ-AVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKS---- 113
Query: 158 NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 204
E++R+++ G + L+ F F W+ ++ +P
Sbjct: 114 ---FQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLP 157
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 3e-09
Identities = 13/101 (12%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135
G G R++++L + ++ K ++ + +R + ++ + M + T+
Sbjct: 101 GAGIGRITKNLLTKLYATTDLLEPVKHML-EEAKRELAGMPVGKFILASMETATLPPNTY 159
Query: 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176
D+I+ + L + + ++ ++ L G
Sbjct: 160 DLIVIQWTAIYLTDADF-----VKFFKHCQQALTPNGYIFF 195
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 3e-09
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 20/143 (13%)
Query: 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFS 100
++ + L L P P ++L GCG + L IT++D S
Sbjct: 14 EALRLSEQAETLEKLLHHDTVYP---PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDIS 70
Query: 101 KVVISDML---RRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHK 155
+ L R N ++++ ++ S+ F D +FD I L+ L PE
Sbjct: 71 ----PESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPE---- 122
Query: 156 LGNQYLSEVKRLLKSGGKFVCLT 178
+ L +K++LK GG +
Sbjct: 123 ---EALKSLKKVLKPGGTITVIE 142
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 5e-09
Identities = 27/168 (16%), Positives = 44/168 (26%), Gaps = 22/168 (13%)
Query: 9 SSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSP 68
+ SS++A G+ +D + Y L+ +S
Sbjct: 2 AHSSATAGPQADYSGEIAEL--YDLVH-----QGKGKDYHREAADLAALVRRHSPKAAS- 53
Query: 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128
+L CG HL D+ + ++ S +DML R D DM
Sbjct: 54 ---LLDVACGTGMHLRHLADSFGT-VEGLELS----ADMLAIARRRNPDAVLHHGDMRDF 105
Query: 129 QFMDETFDVILDKGG-LDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
F + + L L + G V
Sbjct: 106 SL-GRRFSAVTCMFSSIGHLAGQAELDAA----LERFAAHVLPDGVVV 148
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 6e-09
Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 19/142 (13%)
Query: 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKVVIS 105
+ LRD +++ + +L GCG + DA +D SK
Sbjct: 64 AGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK---- 119
Query: 106 DMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVK 165
++ + + + V + F D + D I+ + A E+
Sbjct: 120 VAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR---IYAP-----------CKAEELA 165
Query: 166 RLLKSGGKFVCLTLAESHVLGL 187
R++K GG + T H++ L
Sbjct: 166 RVVKPGGWVITATPGPRHLMEL 187
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 6e-09
Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 31/166 (18%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLI---------SLIGAPTSSPPPQILVPGC 77
S + F ++ + R I S+ A + P IL G
Sbjct: 2 SLSEIKRKFD--------AVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGA 53
Query: 78 GNSRLSEHLYDAGFHG-ITNVDFSKVVISDML---RRNVRDRSDMRWRVMDMTSMQFMDE 133
G LS L + T VD S+ ML + R +++ D + F +E
Sbjct: 54 GTGLLSAFLMEKYPEATFTLVDMSE----KMLEIAKNRFRGNLKVKYIEADYSKYDF-EE 108
Query: 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179
+D+++ + L + + + +LK G F+ L
Sbjct: 109 KYDMVVSALSIHHLEDEDKK-----ELYKRSYSILKESGIFINADL 149
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 8e-09
Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 19/166 (11%)
Query: 24 DFTSKENWDKFF--TIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSR 81
D + W++++ T+ W A + + +P ++ CGN
Sbjct: 12 DINVADAWEQYWNKTLVNSTPVL-WDANVERAVVVDLPRFE-LLFNPELPLIDFACGNGT 69
Query: 82 LSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSM----QFMDETF 135
++ L + +D S L +++ +R++D Q E
Sbjct: 70 QTKFLSQFFPR-VIGLDVS----KSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIG 124
Query: 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181
D + + + ++ LL G + L
Sbjct: 125 DANI----YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 1e-08
Identities = 94/620 (15%), Positives = 169/620 (27%), Gaps = 212/620 (34%)
Query: 85 HL-YDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
H+ ++ G H D ++S V + D + V DM E D I
Sbjct: 6 HMDFETGEHQYQYKD----ILSVFEDAFVDN-FDCK-DVQDMPKSILSKEEIDHI----- 54
Query: 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 203
+M V L LF W +
Sbjct: 55 ---IMSK-----------DAVSGTL------------------RLF------WTL----- 71
Query: 204 PQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEALESENQ---- 259
S E +Q F+ + N F + +++E +
Sbjct: 72 --LSKQEEMVQKFVEEVLR---------------------INYKF-LMSPIKTEQRQPSM 107
Query: 260 TRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLDARENS 319
R Y D LY+ D Q+ AK ++ R + L R LL+ R
Sbjct: 108 MTRMYIEQRDRLYN--DNQVFAKYNV------SRLQPYL--------KLRQALLELRPAK 151
Query: 320 GPF---MYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMDEI 376
+ G KT W+ ++ V L ++
Sbjct: 152 NVLIDGVLGSG-----KT-------------WVALD---------VCLS--------YKV 176
Query: 377 QKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYENVDP 436
Q + + L + + M+ +++Q + T D
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQ-------KLLYQIDPNWT----------SRSDH 219
Query: 437 EFSRIWPSEDLK--FRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSKRK 494
+ ++ RRL+ + LL+ +V+ + + + K
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSK----PYENCLLVLL------NVQNAKAWNAFNLSCKIL 269
Query: 495 GTQRRSDDSGNQLKVYHGYLASSYHMGIISGFT------LISSYLE-SVASVGKSVKAV- 546
T R + + L S H T L+ YL+ + + V
Sbjct: 270 LTTRFKQVT-DFLSAATTTHISLDHH--SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 547 --VIGL-GAGLLPM------FLH-ECMPFVGIEAVELDLTMLNLAE--DYFGFTQDKSLK 594
+ + + + H C +E L +L AE F L
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKL--TTIIESSLNVLEPAEYRKMF-----DRLS 379
Query: 595 VFN-------HLFCL----QLEEDVNLVLFGLSSESCIKDNSFPEA----AVQLGKLVKF 639
VF L L ++ DV +V+ L S ++ ++ L VK
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 640 QHL-EISQSIMDAAKKIRCL 658
++ + +SI+D +
Sbjct: 440 ENEYALHRSIVDHYNIPKTF 459
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 1e-08
Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 17/131 (12%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML---RRNVRDR-SDMRWRVM 123
P L G G R++ L G+ +D + ML R+ + ++
Sbjct: 39 EEPVFLELGVGTGRIALPLIARGYR-YIALDAD----AAMLEVFRQKIAGVDRKVQVVQA 93
Query: 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT-LAES 182
D ++ DE+ ++ + + L+E R+LK GG + AE+
Sbjct: 94 DARAIPLPDESVHGVIVVHLWHLVPDWPKV-------LAEAIRVLKPGGALLEGWDQAEA 146
Query: 183 HVLGLLFPKFR 193
L ++R
Sbjct: 147 SPEWTLQERWR 157
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 25/151 (16%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
+DK + Y +W L CG L+E+L
Sbjct: 10 YDKLI------RADVDYKKWSDFIIEKCVENNLVFDD----YLDLACGTGNLTENLCPKF 59
Query: 91 FHGITNVDFSKVVISDML---RRNVRDRS-DMRWRVMDMTSMQFMDETFDVILDKGG-LD 145
+ VD S+ +ML R + R D++++ + FD+I +
Sbjct: 60 KN-TWAVDLSQ----EMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTN 113
Query: 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176
+++ + L +Y V LK GG F+
Sbjct: 114 YIIDSD---DL-KKYFKAVSNHLKEGGVFIF 140
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 16/114 (14%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDR---SDMRWR 121
+ +I GCG + L A + IT +D I ++ N ++
Sbjct: 45 TDDAKIADIGCGTGGQTLFL--ADYVKGQITGIDLFPDFI-EIFNENAVKANCADRVKGI 101
Query: 122 VMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
M ++ F +E D+I +G + + + ++E + LK GG
Sbjct: 102 TGSMDNLPFQNEELDLIWSEGAIYNIGFE--------RGMNEWSKYLKKGGFIA 147
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDR---SDMRWR 121
+ I GCG + L AG +T +DF I D+ RN R + +
Sbjct: 45 TEKSLIADIGCGTGGQTMVL--AGHVTGQVTGLDFLSGFI-DIFNRNARQSGLQNRVTGI 101
Query: 122 VMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
V M + F +E D+I +G + + + L+E ++ LK GG
Sbjct: 102 VGSMDDLPFRNEELDLIWSEGAIYNIGFE--------RGLNEWRKYLKKGGYLA 147
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-08
Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 30/172 (17%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+ W R ++ I P ++L GCG L L D
Sbjct: 22 QAWIDAV--RHGAIESRRQVTDQ----AILLAILGR---QPERVLDLGCGEGWLLRALAD 72
Query: 89 AGFHGITNVDFSKVVISDML----RRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144
G VD ++ + + + + + +D+I
Sbjct: 73 RGIE-AVGVDGD----RTLVDAARAAGAGEVHLASYAQLAEAKVPV-GKDYDLIC---AN 123
Query: 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 196
AL+ ++ + LS ++ LL GG V TL H + ++ GW
Sbjct: 124 FALLHQDII-----ELLSAMRTLLVPGGALVIQTL---HPWSVADGDYQDGW 167
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 3e-08
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 14/112 (12%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML----RRNVRDRSDMRWRVM 123
P +I GCG + L D + +T VD S +ML + + + + V
Sbjct: 33 PGKRIADIGCGTGTATLLLAD-HYE-VTGVDLS----EEMLEIAQEKAMETNRHVDFWVQ 86
Query: 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
DM ++ + + + L+ L + RLL GGK +
Sbjct: 87 DMRELELPEPVDAITILCDSLNYLQTEADVKQT----FDSAARLLTDGGKLL 134
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 4e-08
Identities = 23/158 (14%), Positives = 45/158 (28%), Gaps = 30/158 (18%)
Query: 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSE 84
+ I G + L+ ++L G ++
Sbjct: 7 HHHHHHMYVTSQIHAKGSDLAKLMQIAALK-------------GNEEVLDVATGGGHVAN 53
Query: 85 HLYDAGFHGITNVDFSKVVISDML---RRNVRDR--SDMRWRVMDMTSMQFMDETFDVIL 139
+ D ++ D+L R + + + D M F DE F ++
Sbjct: 54 AFAPFVKK-VVAFDLTE----DILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVT 108
Query: 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177
+ P +SE R+LK GG+ + +
Sbjct: 109 CRIAAHHFPNPASF-------VSEAYRVLKKGGQLLLV 139
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 4e-08
Identities = 11/57 (19%), Positives = 24/57 (42%)
Query: 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596
++ +G GA + + + P VELD + L+ ++F + +K+
Sbjct: 88 ASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIR 144
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 7e-08
Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 8/119 (6%)
Query: 60 LIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-- 117
L P + L G G R+++ L F + VD ++ + + + +
Sbjct: 71 LREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL-VQAKTYLGEEGKRV 129
Query: 118 MRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176
+ + +++DVI + + L + L ++L K L+ G V
Sbjct: 130 RNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHL-----AEFLRRCKGSLRPNGIIVI 183
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 9e-08
Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 24/163 (14%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+ K Y + +I+ G + G G LS L
Sbjct: 11 KKGAKNMDEISKTLFAPIYPII---AENIINRFGIT----AGTCIDIGSGPGALSIALAK 63
Query: 89 AGFHGITNVDFSKVVISDML---RRNVRDR---SDMRWRVMDMTSMQFMDETFDVILDKG 142
I +DFSK M +N+ D ++ D+ ++ D D+I+ +G
Sbjct: 64 QSDFSIRALDFSK----HMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRG 119
Query: 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 185
+ + E+ R+LKSGGK + L
Sbjct: 120 SVFFWEDVA-------TAFREIYRILKSGGKTYIGGGFGNKEL 155
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDML---RRNVRDR--SDMRWRVMDMTSMQF 130
G G + VD + +M+ +++ ++R++ S+ F
Sbjct: 29 GAGAGHTALAFSPYVQE-CIGVDAT----KEMVEVASSFAQEKGVENVRFQQGTAESLPF 83
Query: 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177
D++FD+I + + + + EV R+LK G+F+ +
Sbjct: 84 PDDSFDIITCRYAAHHFSDVR-------KAVREVARVLKQDGRFLLV 123
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 3e-07
Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 33/160 (20%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
W + IGD+ AE+ + L+ L+ ++L CG S L + G
Sbjct: 31 WQLY-----IGDTRSRTAEY---KAWLLGLLRQH---GCHRVLDVACGTGVDSIMLVEEG 79
Query: 91 FHGITNVDFSKVVISDML---RRNVRDR-----------SDMRWRVMDMTSMQFMDETFD 136
F +T+VD S ML + +R + W +D + FD
Sbjct: 80 FS-VTSVDAS----DKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD--VPAGDGFD 132
Query: 137 VILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
++ G L + + L + +++ GG V
Sbjct: 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135
GCGN ++L + + +D + L+ V+++ D + + D +
Sbjct: 25 GCGNGFYCKYLLEFATK-LYCIDINV----IALKE-VKEKFD--SVITLSDPKEIPDNSV 76
Query: 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177
D IL + + + +SEVKR+LK G+ + +
Sbjct: 77 DFILFANSFHDMDDKQ-------HVISEVKRILKDDGRVIII 111
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 9e-07
Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 76 GCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133
G G ++ +G +D ++ +M V + + + D+ + +F +
Sbjct: 63 GSGLGGGCMYI--NEKYGAHTHGIDICSNIV-NMANERVSGNNKIIFEANDILTKEFPEN 119
Query: 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
FD+I + + AL N+ + + LK G +
Sbjct: 120 NFDLIYSRDAILALSLENK-----NKLFQKCYKWLKPTGTLL 156
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 21/140 (15%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
+ E + L + + L GC +E L +T +D I
Sbjct: 32 NPF-ERERHTQLLRLSLSSG---AVSNGLEIGCAAGAFTEKLAPHCKR-LTVIDVMPRAI 86
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALME-----PELGHKLGNQ 159
+ + S + W D+ E FD+I+ + E ++
Sbjct: 87 -GRACQRTKRWSHISWAATDILQ-FSTAELFDLIV-------VAEVLYYLEDMTQMR--T 135
Query: 160 YLSEVKRLLKSGGKFVCLTL 179
+ + ++L GG V +
Sbjct: 136 AIDNMVKMLAPGGHLVFGSA 155
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 3e-06
Identities = 14/118 (11%), Positives = 34/118 (28%), Gaps = 20/118 (16%)
Query: 63 APTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122
+ +P ++L GCG+ + DFS ++L+ +
Sbjct: 43 SRLLTPQTRVLEAGCGHGPDAARFGPQAAR-WAAYDFS----PELLKLARANAPHADVYE 97
Query: 123 MDMTSM--QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178
+ + F +I+ + G + + + L F+ +
Sbjct: 98 WNGKGELPAGLGAPFGLIVSRRGPTS-------------VILRLPELAAPDAHFLYVG 142
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 4e-06
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 23/138 (16%)
Query: 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVV 103
+ ++ L++ + T P I+ GCG L L G T +D
Sbjct: 5 YNDDYVSF---LVNTVWKIT--KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSG--- 56
Query: 104 ISDML---RRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQ 159
+L R R D + D T ++ ++ +D+ + L + PE
Sbjct: 57 -ETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICHAFLLHMTTPE-------T 107
Query: 160 YLSEVKRLLKSGGKFVCL 177
L ++ +K GGK +C
Sbjct: 108 MLQKMIHSVKKGGKIICF 125
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 18/124 (14%), Positives = 44/124 (35%), Gaps = 15/124 (12%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135
GC + L + + G ++ ++ + + + + ++ M + +E F
Sbjct: 40 GCSSGALGAAIKENGTR-VSGIEAFPEAA-EQAKEKLDH---VVLGDIETMDMPYEEEQF 94
Query: 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL---AESHVLGLLFPKF 192
D ++ L+ L +P + +VK +K G + S + LL +
Sbjct: 95 DCVIFGDVLEHLFDPW-------AVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNW 147
Query: 193 RFGW 196
+
Sbjct: 148 TYTE 151
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 11/102 (10%)
Query: 44 FEW----YAEWPQLR-DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNV 97
W Y ++ R P L+ GCG +E L D IT +
Sbjct: 4 MAWSAQQYLKFEDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGI 63
Query: 98 DFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVIL 139
D DML + + + D+ + + + D++
Sbjct: 64 DSD----DDMLEKAADRLPNTNFGKADLATWKP-AQKADLLY 100
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 76 GCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQFM 131
GCG + + L A +T + S+ ++ R + + D + F
Sbjct: 69 GCGIGKPAVRL--ATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126
Query: 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
D +FD + L++L + + + L E+ R+L+ GG
Sbjct: 127 DASFDAVW---ALESLH--HMPDR--GRALREMARVLRPGGTVA 163
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 14/127 (11%)
Query: 55 DPLISLIGAPTSSPPPQ-ILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRN 111
+ L S + L G G + L G I ++ + V N
Sbjct: 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFL--VRKFGVSIDCLNIAPVQNKRNEEYN 125
Query: 112 VRDRSD--MRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 169
+ + + + D ++D I DA + K + E R+LK
Sbjct: 126 NQAGLADNITVKYGSFLEIPCEDNSYDFIW---SQDAFL--HSPDK--LKVFQECARVLK 178
Query: 170 SGGKFVC 176
G
Sbjct: 179 PRGVMAI 185
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 12/106 (11%)
Query: 76 GCGNSRLSEHLYDA-GFHG-ITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFM 131
G G +L G G + +D + ++ + V ++ + +
Sbjct: 45 GTGAGFYLPYLSKMVGEKGKVYAIDVQEEMV-NYAWEKVNKLGLKNVEVLKSEENKIPLP 103
Query: 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177
D T D I EL ++L E+KR+ K +
Sbjct: 104 DNTVDFIFMAFTF-----HELSEP--LKFLEELKRVAKPFAYLAII 142
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 17/116 (14%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDML---RRNVRDR---SDMR 119
P + CG L + G + +D+ + L R +
Sbjct: 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYD----PEALDGATRLAAGHALAGQIT 173
Query: 120 WRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
D + E +D++ G + EP+ + + LK GG V
Sbjct: 174 LHRQDAWKLDT-REGYDLLTSNGLN--IYEPDDARVT--ELYRRFWQALKPGGALV 224
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 20/110 (18%)
Query: 76 GCGNSRLSEHL---YDAGFHGITN----VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128
GCG + + G+T DF + D R V +M
Sbjct: 125 GCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAR---ELRIDDHVRSR--VCNMLDT 179
Query: 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178
F ++ + + SE R LK GG++V +T
Sbjct: 180 PFDKGAVTAS---WNNEST-----MYVDLHDLFSEHSRFLKVGGRYVTIT 221
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 4e-05
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR--NVRDRSDMRWRVMDMTSMQFM-D 132
GCG AG VD ++V I+D R N++ R + +R D
Sbjct: 72 GCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG 131
Query: 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL 188
+ FDVI + + + + R L+ GG F+ + +L
Sbjct: 132 KEFDVISSQFSFHYAFSTS---ESLDIAQRNIARHLRPGGYFIMTVPSRDVILERY 184
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Length = 252 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 26/174 (14%), Positives = 56/174 (32%), Gaps = 34/174 (19%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEW--PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSE 84
+ E+W + + R I ++ E L+ L + + ++ P CG + +
Sbjct: 32 TLEDWKEKWVTRHIS----FHQEQGHQLLKKHLDTFLKGQ---SGLRVFFPLCGKAIEMK 84
Query: 85 HLYDAGFHGITNVDFSKVVISDMLRRNVRD------------------RSDMRWRVMDMT 126
D G + V+ S++ I + + +
Sbjct: 85 WFADRGHT-VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143
Query: 127 SMQFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179
+ + FD I D+G L A+ + Y + LL+ +++ L
Sbjct: 144 DLPRANIGKFDRIWDRGALVAINPGDHDR-----YADIILSLLRKEFQYLVAVL 192
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 5e-04
Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 41/169 (24%)
Query: 9 SSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEW-YAEWPQLRDPLISLIGAPTSS 67
S SS+A L Q E + + F+ +WP P+ +
Sbjct: 19 SGPSSAAQRLFQE-----DPEAFLLYH------RGFQSQVKKWPL--QPVDRIARDLRQR 65
Query: 68 PPPQILVP-GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126
P ++ GCG+ RL+ + + V D+ + R V DM
Sbjct: 66 PASLVVADFGCGDCRLASSIRN------------PVHCFDLASLDPR------VTVCDMA 107
Query: 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
+ DE+ DV + +LM + +L E R+LK GG
Sbjct: 108 QVPLEDESVDVAV---FCLSLMGTNIR-----DFLEEANRVLKPGGLLK 148
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 9e-04
Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 20/138 (14%)
Query: 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN---- 111
L + P ++LVP CG S+ L G+H + + S+ +
Sbjct: 10 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQP 68
Query: 112 --VRDRSDMRWRVMDMTSMQF--------MDETFDVILDKGGLDALMEPELGHKLGNQYL 161
+ + D+ + AL +Y+
Sbjct: 69 HITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMR-----ERYV 123
Query: 162 SEVKRLLKSGGKFVCLTL 179
++ L+ + +TL
Sbjct: 124 QHLEALMPQACSGLLITL 141
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 659 | |||
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.86 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.79 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.76 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.72 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.7 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.7 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.7 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.66 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.63 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.63 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.63 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.62 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 99.62 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.62 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.62 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.61 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.6 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.6 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.6 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.59 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.59 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.59 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.59 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.59 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.59 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.59 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.58 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.58 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.58 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.57 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.56 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.55 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.55 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.55 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.55 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.55 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.55 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.55 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.54 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.54 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.54 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.54 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.54 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.54 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.54 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.54 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.54 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.54 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.54 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.54 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.54 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.54 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.53 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.52 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.52 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.51 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.51 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.5 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.5 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.5 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.49 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.49 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.49 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.48 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.48 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.48 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.48 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.47 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.46 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.46 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.46 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.46 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.45 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.45 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.44 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.44 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.44 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.44 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.43 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.43 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.43 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.43 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.43 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.42 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.42 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.41 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.41 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.41 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.4 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.4 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.4 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.39 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.39 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.39 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.39 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.39 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.38 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.36 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.36 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.36 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.36 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.36 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.36 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.35 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.35 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.35 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.34 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.34 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.34 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.34 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.33 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.33 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.33 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.33 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.33 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.32 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.32 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.32 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.31 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.31 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.31 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.31 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.31 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.3 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.3 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.3 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.3 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.3 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.3 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.29 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.29 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.29 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.29 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.29 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.28 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.28 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.28 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.28 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.27 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.27 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.27 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.26 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.26 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.26 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.26 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.25 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.24 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.24 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.23 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.23 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.23 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.23 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.22 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.22 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.22 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.21 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.21 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.21 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.21 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.21 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.21 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.21 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.21 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.2 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.2 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.2 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.2 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.2 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.2 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.19 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.19 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.19 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.18 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.18 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.18 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.17 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.17 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.17 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.16 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.16 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.15 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.15 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.15 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.15 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.15 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.15 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.14 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.14 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.14 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.14 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.14 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.13 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.13 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.12 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.12 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.11 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.11 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.1 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.1 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.1 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.09 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.09 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.08 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.08 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.08 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.08 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.08 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.08 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.07 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.07 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.06 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.05 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.05 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.05 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.05 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.05 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.04 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.04 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.04 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.04 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.03 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.03 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.03 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.02 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.02 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.02 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.01 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.0 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.0 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.0 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.0 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.0 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.99 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.99 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.99 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.99 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.99 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.98 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.98 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.97 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.97 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.97 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.97 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.97 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.96 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.96 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.96 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.95 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.95 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.95 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.94 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.93 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.9 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.9 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.9 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.9 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.88 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.88 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.85 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.85 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.83 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.82 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.81 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.79 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.79 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.78 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.75 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.75 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.74 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.67 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.63 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.62 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.62 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.61 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.6 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.56 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.56 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.54 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.5 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.49 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.41 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.39 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.38 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.38 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.33 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.31 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.3 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.29 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.28 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.26 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.24 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.22 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.22 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.2 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.14 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.12 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.06 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.04 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.98 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.98 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.87 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.78 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.77 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.74 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.7 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.64 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.64 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.62 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.62 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 97.58 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.55 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.46 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.36 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 97.33 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 97.22 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 97.2 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 97.16 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.14 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 97.11 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 97.1 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.09 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 97.08 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 97.05 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 97.03 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 96.9 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 96.89 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 96.89 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 96.8 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 96.79 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 96.78 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 96.78 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 96.77 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 96.71 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 96.71 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 96.68 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 96.67 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 96.67 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 96.67 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 96.67 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 96.62 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 96.62 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 96.6 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 96.59 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 96.55 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 96.53 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 96.53 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 96.52 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 96.48 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 96.47 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 96.47 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 96.46 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 96.45 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 96.44 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 96.44 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 96.43 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 96.39 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 96.37 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 96.36 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 96.32 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 96.31 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 96.31 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 96.29 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 96.26 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 96.26 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 96.26 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 96.25 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 96.24 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 96.21 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 96.21 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 96.17 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 96.17 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 96.16 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 96.15 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 96.15 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 96.11 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 96.1 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 96.08 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 96.08 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 96.08 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 96.04 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 96.04 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 96.04 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 96.03 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 96.02 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 96.02 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 95.99 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 95.99 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 95.97 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 95.94 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 95.92 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 95.92 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 95.9 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 95.9 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 95.9 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 95.89 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 95.89 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 95.89 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 95.88 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 95.86 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 95.86 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 95.82 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 95.82 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 95.81 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 95.8 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 95.8 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 95.78 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.78 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 95.78 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 95.77 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 95.75 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 95.73 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 95.7 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 95.7 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 95.7 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 95.68 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 95.68 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 95.67 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 95.64 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 95.63 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 95.61 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.61 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 95.61 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 95.61 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 95.55 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 95.54 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.52 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 95.51 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 95.48 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 95.46 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 95.46 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.45 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 95.45 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 95.45 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 95.45 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 95.45 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 95.43 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 95.42 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 95.41 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 95.4 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 95.4 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 95.4 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 95.38 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 95.36 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 95.35 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 95.34 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 95.32 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 95.31 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 95.3 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 95.3 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 95.24 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 95.18 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 95.17 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 95.12 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 95.09 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 95.08 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 95.07 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 95.03 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 95.01 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 95.0 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 94.98 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 94.95 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 94.94 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 94.88 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 94.8 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 94.8 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 94.79 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 94.79 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 94.77 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 94.72 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 94.69 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 94.64 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 94.62 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 94.61 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 94.57 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 94.55 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 94.49 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 94.48 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 94.39 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 94.37 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 94.27 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 94.22 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 94.16 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.13 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 94.13 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 93.95 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 93.89 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 93.86 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 93.85 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 93.82 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 93.81 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 93.78 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 93.71 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 93.57 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 93.56 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 93.55 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 93.55 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 93.53 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.51 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 93.42 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 93.4 |
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7e-21 Score=187.45 Aligned_cols=190 Identities=32% Similarity=0.607 Sum_probs=152.9
Q ss_pred CCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHH
Q 006149 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (659)
Q Consensus 24 ~f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~ 103 (659)
+|.+.+||+++|........++|+..+..+...+.+++. ++.+|||+|||+|.++..+++.+..+|+++|+|+.+
T Consensus 3 ~~~~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~ 77 (215)
T 2pxx_A 3 GYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELR-----PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVV 77 (215)
T ss_dssp GGGCHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGCC-----TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHH
T ss_pred cccchhHHHHHhccCCCCCCcccccCHHHHHHHHHHhcC-----CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHH
Confidence 577899999999877434568999999888877777763 578999999999999999999887689999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcc--------cchHHHHHHHHHHHhccccCeEEE
Q 006149 104 ISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPE--------LGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 104 i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~--------~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
++.++++.. ..+++.++++|+.++++++++||+|++.++++++.... ........+++++.++|+|||+++
T Consensus 78 ~~~a~~~~~-~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 156 (215)
T 2pxx_A 78 VAAMQACYA-HVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFI 156 (215)
T ss_dssp HHHHHHHTT-TCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHhcc-cCCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEE
Confidence 998877664 34689999999999988889999999999998775221 012236799999999999999999
Q ss_pred EEEcCCchhhcchhhhhccCceEEEeeeCCCCCCCCCCccEEEEEEecCC
Q 006149 176 CLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (659)
Q Consensus 176 i~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (659)
+.++..++....++......|......+. ...++|++++++.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 200 (215)
T 2pxx_A 157 SMTSAAPHFRTRHYAQAYYGWSLRHATYG------SGFHFHLYLMHKGGK 200 (215)
T ss_dssp EEESCCHHHHHHHHCCGGGCEEEEEEEES------GGGCEEEEEEEETCC
T ss_pred EEeCCCcHHHHHHHhccccCcEEEEEEec------CcceEEEEEEEeCCC
Confidence 99999888776666555557887766652 235668888877553
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-19 Score=179.64 Aligned_cols=143 Identities=18% Similarity=0.325 Sum_probs=113.0
Q ss_pred CCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHH
Q 006149 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (659)
Q Consensus 26 ~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~ 105 (659)
.+.+||+.+|... ...+.+....+.+...+..++.. .++.+|||+|||+|..+..|++.|+ +|+|||+|+.+|+
T Consensus 31 ~~~~~Wd~~y~~~--~~~~~~~~~~~~l~~~~~~~~~~---~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~ 104 (252)
T 2gb4_A 31 LTLEDWKEKWVTR--HISFHQEQGHQLLKKHLDTFLKG---QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIR 104 (252)
T ss_dssp CCHHHHHHHHHHT--CCTTCCTTCCHHHHHHHHHHHTT---CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHH
T ss_pred CCHHHHHHHHhcC--CCCcccCCCCHHHHHHHHHhccC---CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHH
Confidence 4688999999876 23333333333444445444321 3578999999999999999999998 9999999999999
Q ss_pred HHHHHhhc------------------CCCCcEEEEeecCCCCCCC-CcccEEEecccccccCCcccchHHHHHHHHHHHh
Q 006149 106 DMLRRNVR------------------DRSDMRWRVMDMTSMQFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR 166 (659)
Q Consensus 106 ~~~~~~~~------------------~~~~i~~~~~D~~~l~~~~-~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~r 166 (659)
.+++++.. ...+++++++|+.++++++ ++||+|++.++++++...+ ...+++++.+
T Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~-----~~~~l~~~~~ 179 (252)
T 2gb4_A 105 EFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGD-----HDRYADIILS 179 (252)
T ss_dssp HHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGG-----HHHHHHHHHH
T ss_pred HHHHhcccccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHH-----HHHHHHHHHH
Confidence 98776531 2468999999999998764 8999999999999986543 6689999999
Q ss_pred ccccCeEEEEEEc
Q 006149 167 LLKSGGKFVCLTL 179 (659)
Q Consensus 167 vLkpGG~lvi~~~ 179 (659)
+|||||+++++++
T Consensus 180 ~LkpGG~l~l~~~ 192 (252)
T 2gb4_A 180 LLRKEFQYLVAVL 192 (252)
T ss_dssp TEEEEEEEEEEEE
T ss_pred HcCCCeEEEEEEE
Confidence 9999999987664
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-18 Score=175.95 Aligned_cols=116 Identities=21% Similarity=0.279 Sum_probs=95.5
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-----CCC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----FTQ 589 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-----l~~ 589 (659)
++.||++|++. +|+. +++|++|||||||+|++++.+.++.|..+|++|||||+|+++|++||+ .-+
T Consensus 66 e~~YhE~l~h~-~l~~--------~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~ 136 (294)
T 3o4f_A 66 EFIYHEMMTHV-PLLA--------HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYD 136 (294)
T ss_dssp HHHHHHHHHHH-HHHH--------SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGG
T ss_pred HHHHHHHHHHH-HHhh--------CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccC
Confidence 47899999874 4443 388999999999999999999999988899999999999999999993 336
Q ss_pred CCCeeEE-----------------------------ecccchhHHHHHHHhhccCCCCcEEEecC------chHHHHHHH
Q 006149 590 DKSLKVF-----------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS------FPEAAVQLG 634 (659)
Q Consensus 590 d~rl~vf-----------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~------~~~~~~~l~ 634 (659)
|+|++++ .+||+.+||+.|+++| +|+|+++.|+ .......++
T Consensus 137 dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L---~p~Gv~v~q~~sp~~~~~~~~~~~~ 213 (294)
T 3o4f_A 137 DPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCL---NPGGIFVAQNGVCFLQQEEAIDSHR 213 (294)
T ss_dssp CTTEEEEESCTTTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTE---EEEEEEEEEEEESSSCCHHHHHHHH
T ss_pred CCcEEEEechHHHHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHh---CCCCEEEEecCCcccChHHHHHHHH
Confidence 8888443 4699999999999999 9999999986 233444556
Q ss_pred hhcc-CCcc
Q 006149 635 KLVK-FQHL 642 (659)
Q Consensus 635 ~~~~-f~~~ 642 (659)
++.+ |+++
T Consensus 214 ~l~~~F~~v 222 (294)
T 3o4f_A 214 KLSHYFSDV 222 (294)
T ss_dssp HHHHHCSEE
T ss_pred HHHhhCCce
Confidence 6655 8764
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=170.49 Aligned_cols=201 Identities=18% Similarity=0.178 Sum_probs=136.4
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~ 127 (659)
.......+...+.. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++....+ ++++++++|+.+
T Consensus 30 ~~~~~~~~l~~l~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 30 SPEVTLKALSFIDN--LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD 107 (267)
T ss_dssp CHHHHHHHHTTCCC--CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred CHHHHHHHHHhccc--CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh
Confidence 33444445555541 25688999999999999999999866699999999999999988765554 569999999999
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeCCCC
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKS 207 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~ 207 (659)
+++++++||+|++.++++++ +. ..+++++.++|||||++++.+..-.. ..........|...++.+....
T Consensus 108 ~~~~~~~fD~i~~~~~~~~~-~~-------~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 177 (267)
T 3kkz_A 108 LPFRNEELDLIWSEGAIYNI-GF-------ERGLNEWRKYLKKGGYLAVSECSWFT--DERPAEINDFWMDAYPEIDTIP 177 (267)
T ss_dssp CCCCTTCEEEEEESSCGGGT-CH-------HHHHHHHGGGEEEEEEEEEEEEEESS--SCCCHHHHHHHHHHCTTCEEHH
T ss_pred CCCCCCCEEEEEEcCCceec-CH-------HHHHHHHHHHcCCCCEEEEEEeeecC--CCChHHHHHHHHHhCCCCCCHH
Confidence 99888999999999999998 43 48999999999999999998864110 0011111222311111111111
Q ss_pred CCCCCCcc--EEEEEEecCCcccccccccccccc------------ccCCcchHHHHHHHHHHHHHHHHHhcCC
Q 006149 208 SSEPSLQT--FMVVADKENSSVVLQVTSSFDHSS------------LDCNKNQAFGIHEALESENQTRREYSHG 267 (659)
Q Consensus 208 ~~~~~l~~--f~~v~~k~~~~~~l~~~~~~~~y~------------~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 267 (659)
.-...+.. |..+. ....+...|.+.|. ......+..++++..+.|+++++.|...
T Consensus 178 ~~~~~l~~aGf~~v~-----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 246 (267)
T 3kkz_A 178 NQVAKIHKAGYLPVA-----TFILPENCWTDHYFTPKVAAQKIFLTKYAGNKIAEEFSMLQSIEEELYHKYKEY 246 (267)
T ss_dssp HHHHHHHHTTEEEEE-----EEECCGGGTTTTTHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCEEEE-----EEECCHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 00011111 55443 22345556655551 1234567788899999999999988753
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=164.68 Aligned_cols=107 Identities=18% Similarity=0.310 Sum_probs=92.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc-------------CCCCcEEEEeecCCCCCCC-
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-------------DRSDMRWRVMDMTSMQFMD- 132 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~-------------~~~~i~~~~~D~~~l~~~~- 132 (659)
.++.+|||+|||+|..+..|++.|+ +|+|||+|+.||+.++++... ...+++++++|+.++++++
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 4678999999999999999999987 999999999999999877642 2468999999999998765
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
++||+|++.++++++...+ ...++++++++|||||++++++.
T Consensus 100 ~~fD~v~~~~~l~~l~~~~-----~~~~l~~~~r~LkpgG~~~l~~~ 141 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADM-----RERYVQHLEALMPQACSGLLITL 141 (203)
T ss_dssp HSEEEEEEESCGGGSCHHH-----HHHHHHHHHHHSCSEEEEEEEEE
T ss_pred CCEEEEEECcchhhCCHHH-----HHHHHHHHHHHcCCCcEEEEEEE
Confidence 7999999999999885433 56899999999999999655554
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-17 Score=164.25 Aligned_cols=200 Identities=17% Similarity=0.195 Sum_probs=134.4
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~ 127 (659)
.......+...+.. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++....+ .+++++++|+.+
T Consensus 30 ~~~~~~~~l~~l~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 107 (257)
T 3f4k_A 30 SPEATRKAVSFINE--LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDN 107 (257)
T ss_dssp CHHHHHHHHTTSCC--CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred CHHHHHHHHHHHhc--CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 33444445555532 24678999999999999999999865599999999999999988776544 359999999999
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeCCCC
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKS 207 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~ 207 (659)
+++++++||+|++.++++++ + ...+++++.++|||||++++.+..- ............|...++.+....
T Consensus 108 ~~~~~~~fD~v~~~~~l~~~-~-------~~~~l~~~~~~L~pgG~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 177 (257)
T 3f4k_A 108 LPFQNEELDLIWSEGAIYNI-G-------FERGMNEWSKYLKKGGFIAVSEASW--FTSERPAEIEDFWMDAYPEISVIP 177 (257)
T ss_dssp CSSCTTCEEEEEEESCSCCC-C-------HHHHHHHHHTTEEEEEEEEEEEEEE--SSSCCCHHHHHHHHHHCTTCCBHH
T ss_pred CCCCCCCEEEEEecChHhhc-C-------HHHHHHHHHHHcCCCcEEEEEEeec--cCCCChHHHHHHHHHhCCCCCCHH
Confidence 99989999999999999998 3 3489999999999999999988531 001111111122322222121111
Q ss_pred CCCCCCcc--EEEEEEecCCccccccccccccc------------cccCCcchHHHHHHHHHHHHHHHHHhcC
Q 006149 208 SSEPSLQT--FMVVADKENSSVVLQVTSSFDHS------------SLDCNKNQAFGIHEALESENQTRREYSH 266 (659)
Q Consensus 208 ~~~~~l~~--f~~v~~k~~~~~~l~~~~~~~~y------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 266 (659)
.-...+.. |..+. ....+...|.++| ..........++++.++.|++.++.|..
T Consensus 178 ~~~~~l~~aGf~~v~-----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (257)
T 3f4k_A 178 TCIDKMERAGYTPTA-----HFILPENCWTEHYFAPQDEVRETFMKEHAGNKTAMDFMKGQQYERSLYSKYKD 245 (257)
T ss_dssp HHHHHHHHTTEEEEE-----EEECCGGGTCCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCeEEE-----EEECChhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 10111111 55443 2234555665544 1223445667788889999999888863
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=168.48 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=101.1
Q ss_pred cCCccchHHHHHHHHHHhhhhhhhhhccccCCCC--eEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC
Q 006149 510 YHGYLASSYHMGIISGFTLISSYLESVASVGKSV--KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 587 (659)
Q Consensus 510 d~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~--~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl 587 (659)
||.+++++||++|++.+.++.. .+++++ +||+||+|+|+++++|.+++|+++|++|||||.|+++||+||++
T Consensus 62 dP~~le~~Y~e~m~~~~~~l~~------~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~ 135 (317)
T 3gjy_A 62 QPQALEFEYMRWIATGARAFID------AHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI 135 (317)
T ss_dssp CTTCCCSHHHHHHHHHHHHHHH------HHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC
T ss_pred CCcchhhHHHHHHHHHHHhhcc------cCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc
Confidence 6788999999999997765210 013444 99999999999999999999999999999999999999999998
Q ss_pred CCCCCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecCch-----HHHHH
Q 006149 588 TQDKSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNSFP-----EAAVQ 632 (659)
Q Consensus 588 ~~d~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~~~-----~~~~~ 632 (659)
..++|++++ .+|++.+|++.|+++| +++|+++.|+.+ .....
T Consensus 136 ~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~L---kpgGvlv~~~~~~~~~~~~~~~ 212 (317)
T 3gjy_A 136 PRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGL---APGGLYVANCGDHSDLRGAKSE 212 (317)
T ss_dssp CCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHE---EEEEEEEEEEEECTTCHHHHHH
T ss_pred cCCCceEEEECcHHHHHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhc---CCCcEEEEEecCCcchHHHHHH
Confidence 877777332 3577899999999999 999999998842 23345
Q ss_pred HHhhcc-CCccc
Q 006149 633 LGKLVK-FQHLE 643 (659)
Q Consensus 633 l~~~~~-f~~~~ 643 (659)
++++.+ |++..
T Consensus 213 ~~tL~~vF~~v~ 224 (317)
T 3gjy_A 213 LAGMMEVFEHVA 224 (317)
T ss_dssp HHHHHHHCSEEE
T ss_pred HHHHHHHCCceE
Confidence 666666 87653
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=147.05 Aligned_cols=132 Identities=20% Similarity=0.348 Sum_probs=107.1
Q ss_pred CCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHH
Q 006149 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (659)
Q Consensus 25 f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i 104 (659)
+...+||+..|.... . . ..+.+++.. .++.+|||+|||+|.++..+++.+. +|+++|+|+.++
T Consensus 5 ~~~~~~~~~~~~~~~---~------~----~~l~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~ 67 (199)
T 2xvm_A 5 IRDENYFTDKYELTR---T------H----SEVLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSI 67 (199)
T ss_dssp CCCTTHHHHHHTCCC---C------C----HHHHHHTTT---SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH
T ss_pred EechHHHhhhhcccc---c------c----HHHHHHhhc---cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHH
Confidence 456789999886541 1 1 124455543 3567999999999999999999876 999999999999
Q ss_pred HHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 105 SDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 105 ~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.++++....+ +++.++++|+.++++ +++||+|++.++++++...+ ...+++++.++|+|||++++++.
T Consensus 68 ~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 68 ANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMFLEAKT-----IPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp HHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGGSCGGG-----HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhhCCHHH-----HHHHHHHHHHhcCCCeEEEEEEe
Confidence 99887765443 479999999999887 78999999999999986433 56999999999999999888764
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=156.90 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=92.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC---CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG---FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g---~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~ 141 (659)
+++.+|||+|||+|..+..|++.. ..+|+|||+|+.||+.++++....+ .+++++++|+.+++++ .||+|++.
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~ 146 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 146 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceee
Confidence 478999999999999999998762 2389999999999999988875543 5799999999998864 69999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.+++++.+.+ ...+|++++++|||||+|++.+..
T Consensus 147 ~~l~~~~~~~-----~~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 147 FTLQFLEPSE-----RQALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp SCGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eeeeecCchh-----HhHHHHHHHHHcCCCcEEEEEecc
Confidence 9999986544 568999999999999999998764
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=151.92 Aligned_cols=139 Identities=21% Similarity=0.373 Sum_probs=101.6
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHH
Q 006149 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (659)
Q Consensus 27 ~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~ 106 (659)
+.+||+.++.... .....++. .+..++. ++.+|||+|||+|.++..++..+. +|+++|+|+.+++.
T Consensus 2 ~~~yw~~~~~~~~-~~~~~~~~-------~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~ 67 (235)
T 3sm3_A 2 PESYWEKVSGKNI-PSSLDLYP-------IIHNYLQ-----EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRL 67 (235)
T ss_dssp -----------------CCCCT-------THHHHCC-----TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred chhHHHHHhhccC-CCHHHHHH-------HHHHhCC-----CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHH
Confidence 3579999887541 22222322 2555553 578999999999999999999976 99999999999998
Q ss_pred HHHHhhcCCC------CcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 107 MLRRNVRDRS------DMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 107 ~~~~~~~~~~------~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++....+. ++.+.++|+.++++++++||+|++..+++++.+++ ....+++++.++|+|||++++.++.
T Consensus 68 a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (235)
T 3sm3_A 68 AETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPK----ERSRIIKEVFRVLKPGAYLYLVEFG 143 (235)
T ss_dssp HHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGCCCHH----HHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcchhhcCCCHH----HHHHHHHHHHHHcCCCeEEEEEECC
Confidence 8777654332 58999999999998889999999999999987643 2558999999999999999999987
Q ss_pred Cch
Q 006149 181 ESH 183 (659)
Q Consensus 181 ~~~ 183 (659)
..+
T Consensus 144 ~~~ 146 (235)
T 3sm3_A 144 QNW 146 (235)
T ss_dssp CCT
T ss_pred cch
Confidence 544
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=150.68 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=111.1
Q ss_pred CHhhHHHHHhhcCCCCccccccch---hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHH
Q 006149 27 SKENWDKFFTIRGIGDSFEWYAEW---PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (659)
Q Consensus 27 ~~eyWd~~y~~~~~~~~fewy~~~---~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~ 103 (659)
+.++|++.|... +++.+...+ ..+...+...+.. .++.+|||+|||+|.++..+++.+. +|+++|+|+.+
T Consensus 13 ~~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~ 85 (216)
T 3ofk_A 13 TYQSLERELAND---DPWRLDDNPFERERHTQLLRLSLSS---GAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRA 85 (216)
T ss_dssp HHHHHHHHHTSS---SGGGTTTCHHHHHHHHHHHHHHTTT---SSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHH
T ss_pred hHHHHHHHhcCC---CCcccccCHhHHHHHHHHHHHHccc---CCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHH
Confidence 467999998764 222222221 1233344445543 5678999999999999999998875 99999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 104 ISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 104 i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++.++++... .++++++++|+.+++ ++++||+|++.++++++.+++ ....+++++.++|||||++++.+...
T Consensus 86 ~~~a~~~~~~-~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 86 IGRACQRTKR-WSHISWAATDILQFS-TAELFDLIVVAEVLYYLEDMT----QMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp HHHHHHHTTT-CSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHH----HHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred HHHHHHhccc-CCCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCHH----HHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 9988776643 458999999999988 678999999999999987643 25688999999999999999987653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=151.39 Aligned_cols=139 Identities=19% Similarity=0.299 Sum_probs=107.2
Q ss_pred CHhhHHHHHhhcCCCCccccc--cchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHH
Q 006149 27 SKENWDKFFTIRGIGDSFEWY--AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (659)
Q Consensus 27 ~~eyWd~~y~~~~~~~~fewy--~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i 104 (659)
+.+||+..|... .. .|. ...+. +..++.... .++.+|||+|||+|.++..++..+. +|+|+|+|+.++
T Consensus 32 ~~~~w~~~~~~~--~~--~~~~~~~~~~----l~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~ 101 (235)
T 3lcc_A 32 EEGGWEKCWEEE--IT--PWDQGRATPL----IVHLVDTSS-LPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESAL 101 (235)
T ss_dssp HHHHHHHHHHTT--CC--TTCCSSCCHH----HHHHHHTTC-SCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHH
T ss_pred CHHHHHHHHhcC--CC--CcccCCCCHH----HHHHHHhcC-CCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHH
Confidence 467999999875 22 243 22222 333332211 2346999999999999999988776 899999999999
Q ss_pred HHHHHHhhcC--CCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 105 SDMLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 105 ~~~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+.++++.... ..+++++++|+.+++ ++++||+|++.++++++.... ...+++++.++|+|||++++..+..
T Consensus 102 ~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 102 AKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEM-----RPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp HHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSCGGG-----HHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred HHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCCHHH-----HHHHHHHHHHHCCCCcEEEEEEecc
Confidence 9998877542 256999999999987 456999999999999986433 6699999999999999999988753
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-15 Score=159.24 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC--------
Q 006149 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-------- 587 (659)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl-------- 587 (659)
+.||++|++.+++ . ++|++|||||+|+|++++.+.++.+ .+|++|||||+|+++|++||+.
T Consensus 190 ~~Y~e~l~h~~l~-~---------~~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~ 258 (381)
T 3c6k_A 190 LAYTRAIMGSGKE-D---------YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDN 258 (381)
T ss_dssp HHHHHHHTTTTCC-C---------CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSS
T ss_pred HHHHHHHHHHHhh-c---------CCCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhcc
Confidence 4699999875433 2 3478999999999999999999866 6999999999999999999964
Q ss_pred CCCCCeeEE--------------------------------------ecccchhHHHHHHHhhccCCCCcEEEecC----
Q 006149 588 TQDKSLKVF--------------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS---- 625 (659)
Q Consensus 588 ~~d~rl~vf--------------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~---- 625 (659)
+.++|++++ ..||+.+||+.|+++| +++|+++.|+
T Consensus 259 pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L---~p~GVlv~Q~~s~~ 335 (381)
T 3c6k_A 259 LKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVL---KQDGKYFTQGNCVN 335 (381)
T ss_dssp SEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTE---EEEEEEEEEEEETT
T ss_pred ccccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhc---CCCCEEEEecCCCc
Confidence 223455221 1478999999999999 9999999865
Q ss_pred chHHHHHHH-hhcc-CCcc
Q 006149 626 FPEAAVQLG-KLVK-FQHL 642 (659)
Q Consensus 626 ~~~~~~~l~-~~~~-f~~~ 642 (659)
+.+....+. .+.+ |+..
T Consensus 336 ~~~~~~~i~~tl~~vF~~v 354 (381)
T 3c6k_A 336 LTEALSLYEEQLGRLYCPV 354 (381)
T ss_dssp CHHHHHHHHHHHTTSSSCE
T ss_pred chhHHHHHHHHHHHhCCcc
Confidence 334444343 3444 7654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=155.21 Aligned_cols=112 Identities=17% Similarity=0.223 Sum_probs=94.8
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (659)
++...|.++.. ...+|||||||+|.++..|++.+. +|+|+|+|+.|++.+ ...+++.++++|+.+++++
T Consensus 28 ~l~~~l~~~~~-----~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a-----~~~~~v~~~~~~~e~~~~~ 96 (257)
T 4hg2_A 28 ALFRWLGEVAP-----ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQA-----LRHPRVTYAVAPAEDTGLP 96 (257)
T ss_dssp HHHHHHHHHSS-----CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTC-----CCCTTEEEEECCTTCCCCC
T ss_pred HHHHHHHHhcC-----CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhh-----hhcCCceeehhhhhhhccc
Confidence 44555555553 357999999999999999999875 999999999888754 2457899999999999999
Q ss_pred CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+++||+|++..++|++ +. .++++++.|+|||||+|+++.+...
T Consensus 97 ~~sfD~v~~~~~~h~~-~~-------~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 97 PASVDVAIAAQAMHWF-DL-------DRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp SSCEEEEEECSCCTTC-CH-------HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred CCcccEEEEeeehhHh-hH-------HHHHHHHHHHcCCCCEEEEEECCCC
Confidence 9999999999999876 33 3899999999999999999987644
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=156.27 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=95.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.++++....+ ++++++++|+.++++++++||+|++.++
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 159 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 159 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecch
Confidence 56789999999999999999987 65 99999999999998887765433 5799999999999999999999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++++.+. ..+++++.++|||||++++.+...
T Consensus 160 l~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 160 FLHSPDK-------LKVFQECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp GGGCSCH-------HHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred hhhcCCH-------HHHHHHHHHHcCCCeEEEEEEecc
Confidence 9998764 499999999999999999998653
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.61 E-value=9e-16 Score=154.74 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=94.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~-~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++.... ..++.++++|+.++++++++||+|++..++++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 57899999999999999998887669999999999999988776544 35689999999999888889999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.++. ...+++++.++|+|||++++.+..
T Consensus 159 ~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 159 LTDQH-----LAEFLRRCKGSLRPNGIIVIKDNM 187 (241)
T ss_dssp SCHHH-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCHHH-----HHHHHHHHHHhcCCCeEEEEEEcc
Confidence 86543 568999999999999999998764
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-15 Score=145.59 Aligned_cols=135 Identities=21% Similarity=0.248 Sum_probs=108.4
Q ss_pred HhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHH
Q 006149 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (659)
Q Consensus 28 ~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~ 107 (659)
.++|+..+... +...++.+...+.+.+.. .++ +|||+|||+|.++..+++....+|+++|+|+.+++.+
T Consensus 14 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~---~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a 82 (219)
T 3dlc_A 14 AKNMDEISKTL-------FAPIYPIIAENIINRFGI---TAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIA 82 (219)
T ss_dssp HHHHHHHHHTT-------TTTHHHHHHHHHHHHHCC---CEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHH
T ss_pred hhhHHHHHHHh-------hccccHHHHHHHHHhcCC---CCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHH
Confidence 45677666543 112245556666676654 334 9999999999999999987334899999999999999
Q ss_pred HHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 108 LRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 108 ~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++....+ ++++++++|+.++++++++||+|++.++++++.+. ..+++++.++|+|||++++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~-------~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 83 LKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDV-------ATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp HHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCH-------HHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhccCH-------HHHHHHHHHhCCCCCEEEEEecc
Confidence 88765544 47999999999999999999999999999998553 48999999999999999998754
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=151.66 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=91.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++... +++++++|+.++ +++++||+|++.++++|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~ 116 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD---GITYIHSRFEDA-QLPRRYDNIVLTHVLEHI 116 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGC-CCSSCEEEEEEESCGGGC
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHc-CcCCcccEEEEhhHHHhh
Confidence 567999999999999999998876 899999999999988776532 799999999987 467899999999999999
Q ss_pred CCcccchHHHHHHHHHHH-hccccCeEEEEEEcCCch
Q 006149 148 MEPELGHKLGNQYLSEVK-RLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~-rvLkpGG~lvi~~~~~~~ 183 (659)
.++. .+++++. ++|||||++++.+.....
T Consensus 117 ~~~~-------~~l~~~~~~~LkpgG~l~i~~~~~~~ 146 (250)
T 2p7i_A 117 DDPV-------ALLKRINDDWLAEGGRLFLVCPNANA 146 (250)
T ss_dssp SSHH-------HHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred cCHH-------HHHHHHHHHhcCCCCEEEEEcCChHH
Confidence 7654 8999999 999999999999876443
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-15 Score=154.70 Aligned_cols=157 Identities=15% Similarity=0.222 Sum_probs=117.7
Q ss_pred hhhhhcccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEE
Q 006149 16 TDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGIT 95 (659)
Q Consensus 16 ~~lp~~~~~f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~Vt 95 (659)
+.+|..+.+-...++|+.++... ...+..+...+..++.. .++.+|||+|||+|.++..|++.+. +|+
T Consensus 16 ~~~~~~y~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~ 83 (293)
T 3thr_A 16 EGIPDQYADGEAARVWQLYIGDT--------RSRTAEYKAWLLGLLRQ---HGCHRVLDVACGTGVDSIMLVEEGF-SVT 83 (293)
T ss_dssp TTSCCTTTTCHHHHHHHHHHTCC--------SCBCHHHHHHHHHHHHH---TTCCEEEETTCTTSHHHHHHHHTTC-EEE
T ss_pred ccChhhhcCchHHHHHHHHHhcC--------cchHHHHHHHHHHHhcc---cCCCEEEEecCCCCHHHHHHHHCCC-eEE
Confidence 34555444334456888877433 11234455566666654 4678999999999999999999987 999
Q ss_pred EEcCCHHHHHHHHHHhhcCC-----CCcEEEEeecCCCC---CCCCcccEEEec-ccccccCCcccchHHHHHHHHHHHh
Q 006149 96 NVDFSKVVISDMLRRNVRDR-----SDMRWRVMDMTSMQ---FMDETFDVILDK-GGLDALMEPELGHKLGNQYLSEVKR 166 (659)
Q Consensus 96 gvD~S~~~i~~~~~~~~~~~-----~~i~~~~~D~~~l~---~~~~sFDvVi~~-g~l~~l~~~~~~~~~~~~~l~ei~r 166 (659)
|+|+|+.+++.++++..... .++.+..+|+.+++ +++++||+|++. .+++++.+..........+++++++
T Consensus 84 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~ 163 (293)
T 3thr_A 84 SVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS 163 (293)
T ss_dssp EEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHH
Confidence 99999999998877653322 46889999999987 788999999998 7999988722112236799999999
Q ss_pred ccccCeEEEEEEcCCchh
Q 006149 167 LLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 167 vLkpGG~lvi~~~~~~~~ 184 (659)
+|||||++++.......+
T Consensus 164 ~LkpgG~l~~~~~~~~~~ 181 (293)
T 3thr_A 164 MVRPGGLLVIDHRNYDYI 181 (293)
T ss_dssp TEEEEEEEEEEEECHHHH
T ss_pred HcCCCeEEEEEeCCHHHH
Confidence 999999999988764443
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.8e-15 Score=148.66 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=97.7
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCccc
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFD 136 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFD 136 (659)
+..++.. .++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++.. ..++.++++|+.++++++++||
T Consensus 36 l~~~~~~---~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD 110 (253)
T 3g5l_A 36 LKKMLPD---FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDIAIEPDAYN 110 (253)
T ss_dssp HHTTCCC---CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGCCCCTTCEE
T ss_pred HHHhhhc---cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhCCCCCCCeE
Confidence 4444443 5788999999999999999999987799999999999998877653 5789999999999998889999
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+|++..+++++.+. ..+++++.++|||||++++....
T Consensus 111 ~v~~~~~l~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 111 VVLSSLALHYIASF-------DDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp EEEEESCGGGCSCH-------HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEchhhhhhhhH-------HHHHHHHHHHcCCCcEEEEEeCC
Confidence 99999999998553 49999999999999999998765
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=152.99 Aligned_cols=107 Identities=13% Similarity=0.155 Sum_probs=94.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++.... .++.++++|+.++++++++||+|++..++++
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 170 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHCCCCCCCeEEEEEcchhhh
Confidence 567899999999999999998887668999999999999887776433 6799999999999988899999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.+.+ ...+++++.++|||||++++.+.
T Consensus 171 ~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 171 LTDAD-----FVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp SCHHH-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHH-----HHHHHHHHHHhcCCCeEEEEEec
Confidence 85433 56999999999999999999885
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-15 Score=146.29 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=92.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.. .++.++++|+.+++++ ++||+|++..++++
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~ 118 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFEVP-TSIDTIVSTYAFHH 118 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCCCC-SCCSEEEEESCGGG
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhcCCC-CCeEEEEECcchhc
Confidence 3678999999999999999999876 99999999999998876653 6899999999999887 99999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.+++ ...+++++.++|||||++++.+..
T Consensus 119 ~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 119 LTDDE-----KNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp SCHHH-----HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred CChHH-----HHHHHHHHHHhcCCCCEEEEEecc
Confidence 87654 345999999999999999999754
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-15 Score=150.36 Aligned_cols=113 Identities=16% Similarity=0.265 Sum_probs=97.5
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcc
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETF 135 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sF 135 (659)
+.+.+.. .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++....+ +++.++++|+.++++++++|
T Consensus 29 l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~f 104 (260)
T 1vl5_A 29 LMQIAAL---KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 104 (260)
T ss_dssp HHHHHTC---CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHhCC---CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCE
Confidence 4455543 4778999999999999999998875 99999999999999887765544 67999999999999999999
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+|++..+++++.+.. .++.++.++|||||++++.+..
T Consensus 105 D~V~~~~~l~~~~d~~-------~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 105 HIVTCRIAAHHFPNPA-------SFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp EEEEEESCGGGCSCHH-------HHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEEhhhhHhcCCHH-------HHHHHHHHHcCCCCEEEEEEcC
Confidence 9999999999997654 9999999999999999998654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=156.11 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=106.0
Q ss_pred CCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHH
Q 006149 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (659)
Q Consensus 24 ~f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~ 103 (659)
.|....||+.+|.... ...+. .+....+...+.+++.. ...++.+|||||||+|.++..++..++.+|+|+|+|+.|
T Consensus 14 ~~~~~~~~~~~y~~~~-~~~~~-~~~~~~~~~~~~~~~~~-~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~ 90 (263)
T 2a14_A 14 HFLPRDYLATYYSFDG-SPSPE-AEMLKFNLECLHKTFGP-GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRN 90 (263)
T ss_dssp HCCHHHHHHHHCCCCC-SCCHH-HHHHHHHHHHHHHHHST-TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHH
T ss_pred ccCHHHHHHHhcCCCc-ccchh-hHHHHHHHHHHHHHhcC-CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHH
Confidence 3677899999997652 11110 00011122334444432 224678999999999999888878887789999999999
Q ss_pred HHHHHHHhhcCC------------------------------CCcE-EEEeecCCC-CC---CCCcccEEEecccccccC
Q 006149 104 ISDMLRRNVRDR------------------------------SDMR-WRVMDMTSM-QF---MDETFDVILDKGGLDALM 148 (659)
Q Consensus 104 i~~~~~~~~~~~------------------------------~~i~-~~~~D~~~l-~~---~~~sFDvVi~~g~l~~l~ 148 (659)
++.++++..... .++. ++++|+.+. |+ ..++||+|++..+|+++.
T Consensus 91 l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~ 170 (263)
T 2a14_A 91 REELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC 170 (263)
T ss_dssp HHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC
T ss_pred HHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhc
Confidence 998876653321 1233 889999984 43 257999999999999864
Q ss_pred CcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 149 ~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
... .....++++++++|||||+|++.+.
T Consensus 171 ~~~---~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 171 CSL---DAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp SSH---HHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCH---HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 321 1266899999999999999999874
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-15 Score=149.00 Aligned_cols=115 Identities=27% Similarity=0.414 Sum_probs=98.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (659)
.+...+..++. ++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++. ...++.++++|+.+++++
T Consensus 42 ~~~~~l~~~~~-----~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~d~~~~~~~ 113 (242)
T 3l8d_A 42 TIIPFFEQYVK-----KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG--EGPDLSFIKGDLSSLPFE 113 (242)
T ss_dssp THHHHHHHHSC-----TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT--CBTTEEEEECBTTBCSSC
T ss_pred HHHHHHHHHcC-----CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc--ccCCceEEEcchhcCCCC
Confidence 44555666653 578999999999999999999976 9999999999998776543 347899999999999998
Q ss_pred CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+++||+|++.++++++.+. ..+++++.++|+|||++++.++..
T Consensus 114 ~~~fD~v~~~~~l~~~~~~-------~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 114 NEQFEAIMAINSLEWTEEP-------LRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp TTCEEEEEEESCTTSSSCH-------HHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCCccEEEEcChHhhccCH-------HHHHHHHHHHhCCCeEEEEEEcCC
Confidence 9999999999999998654 489999999999999999998653
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-15 Score=146.58 Aligned_cols=115 Identities=15% Similarity=0.146 Sum_probs=98.0
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 133 (659)
...+..++.. .+.+|||+|||+|.++..|+..+. +|+|+|+|+.+++.++++ .+++.++++|+.+++++++
T Consensus 31 ~~~l~~~~~~----~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~d~~~~~~~~~ 101 (203)
T 3h2b_A 31 RVLIEPWATG----VDGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQT----HPSVTFHHGTITDLSDSPK 101 (203)
T ss_dssp HHHHHHHHHH----CCSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHH----CTTSEEECCCGGGGGGSCC
T ss_pred HHHHHHHhcc----CCCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHh----CCCCeEEeCcccccccCCC
Confidence 3345555543 368999999999999999999976 999999999999987665 3589999999999998889
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+||+|++..+++++...+ ...+++++.++|+|||++++.++..+
T Consensus 102 ~fD~v~~~~~l~~~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~~~~ 145 (203)
T 3h2b_A 102 RWAGLLAWYSLIHMGPGE-----LPDALVALRMAVEDGGGLLMSFFSGP 145 (203)
T ss_dssp CEEEEEEESSSTTCCTTT-----HHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred CeEEEEehhhHhcCCHHH-----HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 999999999999986433 56999999999999999999886543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.8e-15 Score=149.83 Aligned_cols=107 Identities=20% Similarity=0.341 Sum_probs=94.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||+|||+|.++..+++....+|+++|+|+.+++.++++....+ .++.++++|+.++++++++||+|++.+++
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 139 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESL 139 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechh
Confidence 5788999999999999999988633599999999999999887765544 46999999999999988999999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++.+. ..+++++.++|||||++++.++.
T Consensus 140 ~~~~~~-------~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 140 HHMPDR-------GRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp TTSSCH-------HHHHHHHHTTEEEEEEEEEEEEE
T ss_pred hhCCCH-------HHHHHHHHHHcCCCeEEEEEEee
Confidence 998664 49999999999999999998865
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-15 Score=146.36 Aligned_cols=136 Identities=20% Similarity=0.269 Sum_probs=102.4
Q ss_pred hHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Q 006149 30 NWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR 109 (659)
Q Consensus 30 yWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~ 109 (659)
||+++|... ...|..........+...+. ++ +|||+|||+|.++..+++.+. +|+++|+|+.+++.+++
T Consensus 1 ~W~~~y~~~----~~~~~~~~~~~l~~~~~~~~-----~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~ 69 (202)
T 2kw5_A 1 MWDERFSQS----EYVYGTEPNDFLVSVANQIP-----QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQ 69 (202)
T ss_dssp CCCCCCCCC----CCCCCCCCCSSHHHHHHHSC-----SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHH
T ss_pred Chhhhhccc----chhhccCchHHHHHHHHhCC-----CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHH
Confidence 577766544 12233332233233334342 45 999999999999999998876 99999999999999988
Q ss_pred HhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 110 RNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 110 ~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
+....+.++.++++|+.++++++++||+|++. +.++... ....+++++.++|+|||++++.++....
T Consensus 70 ~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 136 (202)
T 2kw5_A 70 LAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPSS-----LRQQLYPKVYQGLKPGGVFILEGFAPEQ 136 (202)
T ss_dssp HHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCHH-----HHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred HHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCHH-----HHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 77655568999999999998888999999984 3333211 2679999999999999999999876443
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-15 Score=152.90 Aligned_cols=118 Identities=12% Similarity=0.202 Sum_probs=100.1
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHH--cCCCeEEEEcCCHHHHHHHHHHhhcC---CCCcEEEEeecC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD--AGFHGITNVDFSKVVISDMLRRNVRD---RSDMRWRVMDMT 126 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~--~g~~~VtgvD~S~~~i~~~~~~~~~~---~~~i~~~~~D~~ 126 (659)
.+...+..+.. .++.+|||+|||+|..+..|++ .+..+|+|+|+|+.+++.++++.... .++++++++|+.
T Consensus 24 ~~~~~l~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 99 (299)
T 3g5t_A 24 DFYKMIDEYHD----GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD 99 (299)
T ss_dssp HHHHHHHHHCC----SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT
T ss_pred HHHHHHHHHhc----CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH
Confidence 44555666654 3678999999999999999996 34569999999999999998877655 578999999999
Q ss_pred CCCCCC------CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 127 SMQFMD------ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 127 ~l~~~~------~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++++++ ++||+|++..+++++ + ...+++++.++|+|||++++.++..
T Consensus 100 ~~~~~~~~~~~~~~fD~V~~~~~l~~~-~-------~~~~l~~~~~~LkpgG~l~i~~~~~ 152 (299)
T 3g5t_A 100 DFKFLGADSVDKQKIDMITAVECAHWF-D-------FEKFQRSAYANLRKDGTIAIWGYAD 152 (299)
T ss_dssp CCGGGCTTTTTSSCEEEEEEESCGGGS-C-------HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred hCCccccccccCCCeeEEeHhhHHHHh-C-------HHHHHHHHHHhcCCCcEEEEEecCC
Confidence 998877 899999999999998 4 3599999999999999999966653
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=145.87 Aligned_cols=119 Identities=17% Similarity=0.063 Sum_probs=100.2
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~ 127 (659)
++.....+...+.. .++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++....+ .++.++++|+.+
T Consensus 21 ~~~~~~~l~~~~~~---~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 97 (256)
T 1nkv_A 21 TEEKYATLGRVLRM---KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG 97 (256)
T ss_dssp CHHHHHHHHHHTCC---CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred CHHHHHHHHHhcCC---CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh
Confidence 34455556666654 5788999999999999999988732489999999999999988775544 479999999999
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+++ +++||+|++.++++++.+.. .+++++.++|||||++++.+.
T Consensus 98 ~~~-~~~fD~V~~~~~~~~~~~~~-------~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 98 YVA-NEKCDVAACVGATWIAGGFA-------GAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CCC-SSCEEEEEEESCGGGTSSSH-------HHHHHHTTSEEEEEEEEEEEE
T ss_pred CCc-CCCCCEEEECCChHhcCCHH-------HHHHHHHHHcCCCeEEEEecC
Confidence 987 78999999999999987654 899999999999999999875
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=142.56 Aligned_cols=123 Identities=20% Similarity=0.300 Sum_probs=101.3
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (659)
+......+..++.. ..++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.++++.... .++.++++|+.++
T Consensus 28 ~~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~ 104 (234)
T 3dtn_A 28 FDDFYGVSVSIASV--DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-LKVKYIEADYSKY 104 (234)
T ss_dssp HHHHHHHHHHTCCC--SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-TTEEEEESCTTTC
T ss_pred HHHHHHHHHHHhhc--CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-CCEEEEeCchhcc
Confidence 33444556666652 2467899999999999999999883 359999999999999887776443 3899999999999
Q ss_pred CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+++ ++||+|++..+++++.+++ ...+++++.++|||||++++.+...
T Consensus 105 ~~~-~~fD~v~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 105 DFE-EKYDMVVSALSIHHLEDED-----KKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp CCC-SCEEEEEEESCGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred CCC-CCceEEEEeCccccCCHHH-----HHHHHHHHHHhcCCCcEEEEEEecC
Confidence 887 8999999999999985543 4579999999999999999998753
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=146.33 Aligned_cols=109 Identities=16% Similarity=0.257 Sum_probs=95.5
Q ss_pred CCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
..++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.++++.... ++++++++|+.++++++++||+|++..++
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 130 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN-NKIIFEANDILTKEFPENNFDLIYSRDAI 130 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTTTCCCCTTCEEEEEEESCG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC-CCeEEEECccccCCCCCCcEEEEeHHHHH
Confidence 367889999999999999999987 65 9999999999999887665443 78999999999999989999999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+++...+ ...+++++.++|||||++++.++..
T Consensus 131 ~~~~~~~-----~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 131 LALSLEN-----KNKLFQKCYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp GGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HhcChHH-----HHHHHHHHHHHcCCCCEEEEEEecc
Confidence 9984332 5699999999999999999998653
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=141.65 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=96.2
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcc
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (659)
.+...+.. ..++.+|||+|||+|.++..++..+. +|+++|+|+.+++.+++ ...++++++++|+.++ +++++|
T Consensus 36 ~~~~~l~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~---~~~~~~~~~~~d~~~~-~~~~~~ 108 (218)
T 3ou2_A 36 AALERLRA--GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR---HGLDNVEFRQQDLFDW-TPDRQW 108 (218)
T ss_dssp HHHHHHTT--TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG---GCCTTEEEEECCTTSC-CCSSCE
T ss_pred HHHHHHhc--CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh---cCCCCeEEEecccccC-CCCCce
Confidence 34455542 14567999999999999999999876 99999999999987755 2337899999999998 778999
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
|+|++..+++++.++. ...+++++.++|+|||++++.+...
T Consensus 109 D~v~~~~~l~~~~~~~-----~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 109 DAVFFAHWLAHVPDDR-----FEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp EEEEEESCGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred eEEEEechhhcCCHHH-----HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 9999999999987643 5699999999999999999999764
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.9e-14 Score=134.68 Aligned_cols=104 Identities=25% Similarity=0.390 Sum_probs=89.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEec-ccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDK-GGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~-g~l~~ 146 (659)
++.+|||+|||+|.++..++..+. +++++|+++.+++.++++. +++.++++|+.++++++++||+|++. .++++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 120 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF----PEARWVVGDLSVDQISETDFDLIVSAGNVMGF 120 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----TTSEEEECCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred CCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC----CCCcEEEcccccCCCCCCceeEEEECCcHHhh
Confidence 678999999999999999999875 9999999999999876654 46899999999988888899999998 56776
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+.... ...+++++.++|+|||++++.....
T Consensus 121 ~~~~~-----~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 121 LAEDG-----REPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp SCHHH-----HHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred cChHH-----HHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 64332 5799999999999999999987654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=146.29 Aligned_cols=135 Identities=15% Similarity=0.082 Sum_probs=104.1
Q ss_pred CCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHH
Q 006149 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (659)
Q Consensus 26 ~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~ 105 (659)
...+||..+.... ......+...+..++.. ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++
T Consensus 9 ~~~~~y~~~~~~~--------~~~~~~~~~~~~~~l~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~ 77 (240)
T 3dli_A 9 HTSDYYFLFEEKF--------RGSRELVKARLRRYIPY--FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIK 77 (240)
T ss_dssp ---CHHHHHHHHH--------TCCHHHHHHHHGGGGGG--TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHH
T ss_pred chHHHHHHHHHHh--------CCCHHHHHHHHHHHHhh--hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHH
Confidence 3455777654433 22334455555555543 13568999999999999999999876 8999999999988
Q ss_pred HHHHHhhcCCCCcEEEEeecCCC--CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 106 DMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 106 ~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
.++++ +.++++|+.+. ++++++||+|++.++++++.+++ ...+++++.++|||||++++.+.....
T Consensus 78 ~a~~~-------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~ 145 (240)
T 3dli_A 78 FCEGK-------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPER-----LFELLSLCYSKMKYSSYIVIESPNPTS 145 (240)
T ss_dssp HHHTT-------SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGG-----HHHHHHHHHHHBCTTCCEEEEEECTTS
T ss_pred HHHhh-------cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHH-----HHHHHHHHHHHcCCCcEEEEEeCCcch
Confidence 66433 88999999886 78889999999999999997554 569999999999999999998876433
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-14 Score=143.84 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=99.9
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCC
Q 006149 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~ 133 (659)
..+...+.. .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++....+ +++.++++|+.+++++++
T Consensus 11 ~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 11 GLMIKTAEC---RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHTC---CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred chHHHHhCc---CCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 345555554 6788999999999999999998875 99999999999998877765443 579999999999999889
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+||+|++..+++++.+. ..++.++.++|||||++++.+...
T Consensus 87 ~fD~v~~~~~l~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSDV-------RKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp CEEEEEEESCGGGCSCH-------HHHHHHHHHHEEEEEEEEEEEECB
T ss_pred cEEEEEECCchhhccCH-------HHHHHHHHHHcCCCcEEEEEEcCC
Confidence 99999999999998754 489999999999999999987653
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=143.66 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=106.4
Q ss_pred CHhhHHHHHhhcC-CCCccccccc-hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHH
Q 006149 27 SKENWDKFFTIRG-IGDSFEWYAE-WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (659)
Q Consensus 27 ~~eyWd~~y~~~~-~~~~fewy~~-~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i 104 (659)
..++|+++|.... .....-|... .......+..++.. ..++.+|||+|||+|.++..|++.+. +|+++|+|+.++
T Consensus 15 ~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~ 91 (245)
T 3ggd_A 15 VADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELL--FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSAL 91 (245)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTCCCGGGTHHHHHHHHTTT--SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHH
T ss_pred hHHHHHHHHHhcccCCccceecchhHHHHHHHHHHHhhc--cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHH
Confidence 3556666665431 0111223222 22233344444432 24678999999999999999999887 999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEeecCCCCCCC-----CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 105 SDMLRRNVRDRSDMRWRVMDMTSMQFMD-----ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 105 ~~~~~~~~~~~~~i~~~~~D~~~l~~~~-----~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.++++. ...+++++++|+.++++.. ..||+|++..+++++...+ ...+++++.++|||||++++.++
T Consensus 92 ~~a~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 92 EIAAKEN--TAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEK-----RELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp HHHHHHS--CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGG-----HHHHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHhC--cccCceEEECcccccccccccccccCccEEEEcchhhcCCHHH-----HHHHHHHHHHHcCCCCEEEEEeC
Confidence 9887765 3458999999999875432 2499999999999986444 56999999999999999999988
Q ss_pred CCc
Q 006149 180 AES 182 (659)
Q Consensus 180 ~~~ 182 (659)
..+
T Consensus 165 ~~~ 167 (245)
T 3ggd_A 165 GTG 167 (245)
T ss_dssp CTT
T ss_pred Ccc
Confidence 643
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=142.02 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=90.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||+|.++..+ +..+|+++|+|+.+++.++++. +++.++++|+.++++++++||+|++..+++++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEALPFPGESFDVVLLFTTLEFV 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSCCSCSSCEEEEEEESCTTTC
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccCCCCCCcEEEEEEcChhhhc
Confidence 6789999999999999887 5458999999999999886654 67999999999999988999999999999998
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
.+. ..+++++.++|||||++++.++....
T Consensus 109 ~~~-------~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 109 EDV-------ERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp SCH-------HHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred CCH-------HHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 754 49999999999999999999876543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=140.25 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=96.6
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC------CCcEEEEeecC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR------SDMRWRVMDMT 126 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~------~~i~~~~~D~~ 126 (659)
...+.+++.. .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.++++....+ .++.++++|+.
T Consensus 18 ~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (217)
T 3jwh_A 18 MNGVVAALKQ---SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT 94 (217)
T ss_dssp HHHHHHHHHH---TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence 3345555543 467899999999999999999875 3699999999999999987765433 27999999998
Q ss_pred CCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 127 ~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
..+.++++||+|++..+++++.++. ...+++++.++|||||++++...
T Consensus 95 ~~~~~~~~fD~v~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 95 YQDKRFHGYDAATVIEVIEHLDLSR-----LGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp SCCGGGCSCSEEEEESCGGGCCHHH-----HHHHHHHHHTTTCCSEEEEEEEB
T ss_pred cccccCCCcCEEeeHHHHHcCCHHH-----HHHHHHHHHHHcCCCEEEEEccC
Confidence 8887778999999999999986543 56999999999999997666554
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.4e-15 Score=148.50 Aligned_cols=149 Identities=16% Similarity=0.180 Sum_probs=107.3
Q ss_pred CCCCHhhHHHHHhhcCCCCcc--ccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCH
Q 006149 24 DFTSKENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101 (659)
Q Consensus 24 ~f~~~eyWd~~y~~~~~~~~f--ewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~ 101 (659)
.|.+.+||+.+|.... ..+ .++..+ ....+..++.. ...++.+|||+|||+|.++..++..+..+|+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~l~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~ 89 (265)
T 2i62_A 15 HFNPRDYLEKYYSFGS--RHCAENEILRH--LLKNLFKIFCL-GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTD 89 (265)
T ss_dssp HCCHHHHHHHHHCCCS--SCHHHHHHHHH--HHHHHHHHHHS-SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCH
T ss_pred hcCHHHHHHHHhCcCC--cchhHHHHHHh--hHHHHHHHhcc-cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCH
Confidence 3667889999997651 111 111111 11223333332 2246689999999999999999888766899999999
Q ss_pred HHHHHHHHHhhcCCC------------------------------Cc-EEEEeecCCCC-CCC---CcccEEEecccccc
Q 006149 102 VVISDMLRRNVRDRS------------------------------DM-RWRVMDMTSMQ-FMD---ETFDVILDKGGLDA 146 (659)
Q Consensus 102 ~~i~~~~~~~~~~~~------------------------------~i-~~~~~D~~~l~-~~~---~sFDvVi~~g~l~~ 146 (659)
.+++.++++...... ++ .++++|+.+.+ +++ ++||+|++..++++
T Consensus 90 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~ 169 (265)
T 2i62_A 90 QNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDA 169 (265)
T ss_dssp HHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH
T ss_pred HHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhh
Confidence 999988777643211 17 89999999874 355 89999999999996
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.... .....+++++.++|||||++++.+..
T Consensus 170 ~~~~~---~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 170 ACPDL---PAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp HCSSH---HHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hcCCh---HHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 64331 12679999999999999999998743
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-14 Score=141.58 Aligned_cols=110 Identities=28% Similarity=0.370 Sum_probs=94.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++......+++++++|+.++++++++||+|++..++++.
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~ 116 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 116 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhC
Confidence 478999999999999999999876 9999999999999998877666688999999999988888899999999885443
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
...+ ...+++++.++|+|||++++.+...+.
T Consensus 117 ~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~~~~ 147 (227)
T 1ve3_A 117 EPLE-----LNQVFKEVRRVLKPSGKFIMYFTDLRE 147 (227)
T ss_dssp CHHH-----HHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred CHHH-----HHHHHHHHHHHcCCCcEEEEEecChHH
Confidence 2222 568999999999999999999876433
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=147.12 Aligned_cols=134 Identities=17% Similarity=0.152 Sum_probs=103.5
Q ss_pred HhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHH
Q 006149 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (659)
Q Consensus 28 ~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~ 107 (659)
.++|+..+.... ..|......+...+...+ .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+
T Consensus 19 a~~yd~~~~~~~----~~~~~~~~~~~~~l~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a 88 (263)
T 3pfg_A 19 AELYDLVHQGKG----KDYHREAADLAALVRRHS-----PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIA 88 (263)
T ss_dssp HHHHHHHHHHTT----CCHHHHHHHHHHHHHHHC-----TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHH
T ss_pred HHHHHHHhhcCC----CCHHHHHHHHHHHHHhhC-----CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHH
Confidence 467777776431 122222233333444443 2468999999999999999998876 899999999999988
Q ss_pred HHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecc-cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 108 LRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 108 ~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g-~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++. +++.++++|+.++++ +++||+|++.+ +++++.+.+ ....+++++.++|||||++++..+.
T Consensus 89 ~~~~----~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~ 153 (263)
T 3pfg_A 89 RRRN----PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQA----ELDAALERFAAHVLPDGVVVVEPWW 153 (263)
T ss_dssp HHHC----TTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHH----HHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred HhhC----CCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHH----HHHHHHHHHHHhcCCCcEEEEEecc
Confidence 7664 379999999999887 68999999998 999985432 2678999999999999999997643
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=140.26 Aligned_cols=109 Identities=17% Similarity=0.271 Sum_probs=93.0
Q ss_pred CCCCeEEEECCCcchHH-HHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLS-EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s-~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.++.+|||+|||+|..+ ..++..+. +|+++|+|+.+++.++++......++.++++|+.++++++++||+|++.++++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 35789999999999984 45555565 99999999999999888766556789999999999998889999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++...+ ...+++++.++|||||++++.++..
T Consensus 101 ~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 101 HMRKND-----VKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp GSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred hCCHHH-----HHHHHHHHHHHcCCCcEEEEEEecc
Confidence 874222 6799999999999999999998764
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-14 Score=141.03 Aligned_cols=126 Identities=19% Similarity=0.228 Sum_probs=103.3
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 006149 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (659)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (659)
.+......+.+++... ..++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++....+.++.++++|+.++
T Consensus 19 ~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~ 96 (246)
T 1y8c_A 19 DYKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL 96 (246)
T ss_dssp CHHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC
T ss_pred cHHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccC
Confidence 3445555666666541 12678999999999999999999876 899999999999999887765555899999999998
Q ss_pred CCCCCcccEEEecc-cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 129 QFMDETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 129 ~~~~~sFDvVi~~g-~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+++ ++||+|++.. +++++.+.+ ....+++++.++|+|||++++.....
T Consensus 97 ~~~-~~fD~v~~~~~~l~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 97 NIN-RKFDLITCCLDSTNYIIDSD----DLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp CCS-CCEEEEEECTTGGGGCCSHH----HHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred Ccc-CCceEEEEcCccccccCCHH----HHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 877 8999999998 999985432 26799999999999999999876653
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.1e-14 Score=144.43 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=93.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++....+.+++++++|+.++++ +++||+|++..+++++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 197 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFL 197 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhC
Confidence 578999999999999999999987 99999999999999988776665689999999999877 7899999999999998
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
..+. ...+++++.++|+|||+++++..
T Consensus 198 ~~~~-----~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 198 NRER-----VPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp CGGG-----HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHH-----HHHHHHHHHHhcCCCcEEEEEEe
Confidence 6554 67999999999999999877654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=143.27 Aligned_cols=137 Identities=17% Similarity=0.230 Sum_probs=101.5
Q ss_pred HhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHH
Q 006149 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (659)
Q Consensus 28 ~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~ 107 (659)
.+||+..|.... ..+......+.+++......++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.+
T Consensus 9 a~~yd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a 79 (252)
T 1wzn_A 9 AEYYDTIYRRRI--------ERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVA 79 (252)
T ss_dssp GGGHHHHTHHHH--------HTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred HHHHHHHHhcch--------hhhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHH
Confidence 568888776541 11112222333333221124678999999999999999999886 999999999999999
Q ss_pred HHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccc-ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 108 LRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG-LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 108 ~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~-l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+++....+.++.++++|+.+++++ ++||+|++.+. +.++ ..+ ....+++++.++|+|||++++...
T Consensus 80 ~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~-~~~----~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 80 RRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF-DEE----DLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp HHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGS-CHH----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcC-CHH----HHHHHHHHHHHHcCCCeEEEEecc
Confidence 887766666899999999998765 78999998744 4443 221 267999999999999999987553
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.6e-14 Score=137.84 Aligned_cols=101 Identities=25% Similarity=0.315 Sum_probs=89.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++. ++.+.++|+.+++ ++++||+|++.++++++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 115 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-----GRPVRTMLFHQLD-AIDAYDAVWAHACLLHV 115 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----TSCCEECCGGGCC-CCSCEEEEEECSCGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-----CCceEEeeeccCC-CCCcEEEEEecCchhhc
Confidence 578999999999999999999876 9999999999999887765 5788999999988 77999999999999998
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
...+ ...+++++.++|||||++++....
T Consensus 116 ~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 116 PRDE-----LADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp CHHH-----HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHH-----HHHHHHHHHHhcCCCcEEEEEEcC
Confidence 6333 669999999999999999998754
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=142.50 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=98.1
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCC
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~ 133 (659)
+.+.+.. .++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++....+ ++++++++|+.+++++++
T Consensus 29 ~~~~~~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 29 VLKEFGL---KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHTC---CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHhCC---CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 4455543 567899999999999999999874 3599999999999999988765544 579999999999999899
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+||+|++..+++++.+. ..+++++.++|+|||++++.++.
T Consensus 106 ~fD~v~~~~~l~~~~~~-------~~~l~~~~~~LkpgG~l~i~~~~ 145 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSEP-------LKFLEELKRVAKPFAYLAIIDWK 145 (219)
T ss_dssp CEEEEEEESCGGGCSSH-------HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CeeEEEeehhhhhcCCH-------HHHHHHHHHHhCCCeEEEEEEec
Confidence 99999999999998654 48999999999999999998865
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-14 Score=140.14 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=96.5
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCC------CCcEEEEeecC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR------SDMRWRVMDMT 126 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~------~~i~~~~~D~~ 126 (659)
...+.+++.. .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.++++....+ .+++++++|+.
T Consensus 18 ~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (219)
T 3jwg_A 18 LGTVVAVLKS---VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV 94 (219)
T ss_dssp HHHHHHHHHH---TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS
T ss_pred HHHHHHHHhh---cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc
Confidence 3445555543 4678999999999999999998753 699999999999999987764432 27999999998
Q ss_pred CCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 127 ~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
..++++++||+|++..+++++.+++ ...+++++.++|||||.+++...
T Consensus 95 ~~~~~~~~fD~V~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 95 YRDKRFSGYDAATVIEVIEHLDENR-----LQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp SCCGGGTTCSEEEEESCGGGCCHHH-----HHHHHHHHHTTTCCSEEEEEEEB
T ss_pred ccccccCCCCEEEEHHHHHhCCHHH-----HHHHHHHHHHhhCCCEEEEEccc
Confidence 8888789999999999999986543 56999999999999996655543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-14 Score=143.09 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=92.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.....+++.++++|+.++++++++||+|++..++++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 116 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHL 116 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhh
Confidence 4678999999999999999998865 999999999999988777633457899999999999988899999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
+.+. ..+++++.++|+|||++++.
T Consensus 117 ~~~~-------~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 117 VPDW-------PKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CTTH-------HHHHHHHHHHEEEEEEEEEE
T ss_pred cCCH-------HHHHHHHHHHCCCCcEEEEE
Confidence 8754 48999999999999999987
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=151.83 Aligned_cols=122 Identities=20% Similarity=0.328 Sum_probs=99.2
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTS 127 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~----~~i~~~~~D~~~ 127 (659)
.....+...+.. ++.+|||+|||+|.++..|++.+. +|+|+|+|+.+++.++++....+ .+++++++|+.+
T Consensus 70 ~~~~~~~~~~~~----~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 144 (299)
T 3g2m_A 70 SEAREFATRTGP----VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA 144 (299)
T ss_dssp HHHHHHHHHHCC----CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB
T ss_pred HHHHHHHHhhCC----CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc
Confidence 344455566643 345999999999999999999976 89999999999999988876655 689999999999
Q ss_pred CCCCCCcccEEEec-ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 128 MQFMDETFDVILDK-GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 128 l~~~~~sFDvVi~~-g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
+++ +++||+|++. .+++++...+ ...+++++.++|||||++++.++..+..
T Consensus 145 ~~~-~~~fD~v~~~~~~~~~~~~~~-----~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 196 (299)
T 3g2m_A 145 FAL-DKRFGTVVISSGSINELDEAD-----RRGLYASVREHLEPGGKFLLSLAMSEAA 196 (299)
T ss_dssp CCC-SCCEEEEEECHHHHTTSCHHH-----HHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred CCc-CCCcCEEEECCcccccCCHHH-----HHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence 987 6899998865 5566543222 6799999999999999999999876554
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-14 Score=142.54 Aligned_cols=113 Identities=17% Similarity=0.300 Sum_probs=97.1
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcc
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (659)
.+..++.. .++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.++++.. ..++.++++|+.++++++++|
T Consensus 34 ~l~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~f 108 (243)
T 3bkw_A 34 ALRAMLPE---VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP--DTGITYERADLDKLHLPQDSF 108 (243)
T ss_dssp HHHHHSCC---CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC--SSSEEEEECCGGGCCCCTTCE
T ss_pred HHHHhccc---cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc--cCCceEEEcChhhccCCCCCc
Confidence 46666654 4678999999999999999999876699999999999998866543 247999999999998888999
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+|++..+++++.+. ..+++++.++|+|||++++.+..
T Consensus 109 D~v~~~~~l~~~~~~-------~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 109 DLAYSSLALHYVEDV-------ARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp EEEEEESCGGGCSCH-------HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEEeccccccchH-------HHHHHHHHHhcCcCcEEEEEeCC
Confidence 999999999998653 49999999999999999998864
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=146.84 Aligned_cols=117 Identities=17% Similarity=0.251 Sum_probs=98.5
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (659)
+..+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++ ...+++++++|+.+++
T Consensus 19 ~~~~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~-----~~~~~~~~~~d~~~~~ 89 (261)
T 3ege_A 19 DIRIVNAIINLLNL---PKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAV-----VHPQVEWFTGYAENLA 89 (261)
T ss_dssp CHHHHHHHHHHHCC---CTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSC-----CCTTEEEECCCTTSCC
T ss_pred cHHHHHHHHHHhCC---CCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHH-----hccCCEEEECchhhCC
Confidence 34566677777764 5678999999999999999998765 9999999998876442 2238999999999999
Q ss_pred CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 130 ~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
+++++||+|++..+++++.+. ..++++++++|| ||++++.++..+.
T Consensus 90 ~~~~~fD~v~~~~~l~~~~~~-------~~~l~~~~~~Lk-gG~~~~~~~~~~~ 135 (261)
T 3ege_A 90 LPDKSVDGVISILAIHHFSHL-------EKSFQEMQRIIR-DGTIVLLTFDIRL 135 (261)
T ss_dssp SCTTCBSEEEEESCGGGCSSH-------HHHHHHHHHHBC-SSCEEEEEECGGG
T ss_pred CCCCCEeEEEEcchHhhccCH-------HHHHHHHHHHhC-CcEEEEEEcCCch
Confidence 989999999999999998654 499999999999 9999998876443
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=145.39 Aligned_cols=107 Identities=24% Similarity=0.393 Sum_probs=95.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++....+ +++.++++|+.++++++++||+|++..++
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL 115 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence 578899999999999999999884 3599999999999999888765544 57999999999999989999999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++.++. .+++++.++|||||++++.+..
T Consensus 116 ~~~~~~~-------~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 116 EHLQSPE-------EALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp GGCSCHH-------HHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhcCCHH-------HHHHHHHHHcCCCcEEEEEEcC
Confidence 9987654 8999999999999999998753
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-14 Score=144.78 Aligned_cols=110 Identities=25% Similarity=0.475 Sum_probs=94.5
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCccc
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFD 136 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFD 136 (659)
+.+.+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++. +++.++++|+.++++ +++||
T Consensus 49 l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~-~~~fD 119 (279)
T 3ccf_A 49 LLQLLNP---QPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY----PHLHFDVADARNFRV-DKPLD 119 (279)
T ss_dssp HHHHHCC---CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----TTSCEEECCTTTCCC-SSCEE
T ss_pred HHHHhCC---CCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC----CCCEEEECChhhCCc-CCCcC
Confidence 4555553 4678999999999999999998654 9999999999999876554 679999999999987 58999
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+|++..+++++.+.. .+++++.++|||||++++.+....
T Consensus 120 ~v~~~~~l~~~~d~~-------~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 120 AVFSNAMLHWVKEPE-------AAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp EEEEESCGGGCSCHH-------HHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEcchhhhCcCHH-------HHHHHHHHhcCCCcEEEEEecCCc
Confidence 999999999987644 899999999999999999887643
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.1e-14 Score=131.94 Aligned_cols=100 Identities=19% Similarity=0.307 Sum_probs=88.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++ .+++++.++| .++++++||+|++..++++
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~ 87 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK----FDSVITLSDP---KEIPDNSVDFILFANSFHD 87 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH----CTTSEEESSG---GGSCTTCEEEEEEESCSTT
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh----CCCcEEEeCC---CCCCCCceEEEEEccchhc
Confidence 4678999999999999999999876 999999999999988666 5689999999 6777899999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+.+. ..+++++.++|||||++++.++..
T Consensus 88 ~~~~-------~~~l~~~~~~L~pgG~l~~~~~~~ 115 (170)
T 3i9f_A 88 MDDK-------QHVISEVKRILKDDGRVIIIDWRK 115 (170)
T ss_dssp CSCH-------HHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccCH-------HHHHHHHHHhcCCCCEEEEEEcCc
Confidence 8654 499999999999999999998753
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.5e-14 Score=144.64 Aligned_cols=106 Identities=16% Similarity=0.276 Sum_probs=94.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC-CCCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-FMDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~-~~~~sFDvVi~~g~l 144 (659)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+ ++++++++|+.+++ +++++||+|++.+++
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 467999999999999999999976 99999999999999988776544 57999999999987 778999999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+++.++. .+++++.++|||||++++.++..
T Consensus 147 ~~~~~~~-------~~l~~~~~~LkpgG~l~~~~~~~ 176 (285)
T 4htf_A 147 EWVADPR-------SVLQTLWSVLRPGGVLSLMFYNA 176 (285)
T ss_dssp GGCSCHH-------HHHHHHHHTEEEEEEEEEEEEBH
T ss_pred hcccCHH-------HHHHHHHHHcCCCeEEEEEEeCC
Confidence 9987654 89999999999999999998764
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-14 Score=143.10 Aligned_cols=111 Identities=19% Similarity=0.098 Sum_probs=91.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCcccEEEe-ccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILD-KGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDvVi~-~g~ 143 (659)
.++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.++++....+.++.++++|+.++ ++++++||+|++ ...
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence 36789999999999999999887666899999999999999888766667899999999998 888899999998 444
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+ ...... ....+.++++++++|||||++++.++.
T Consensus 139 ~-~~~~~~--~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 139 L-SEETWH--THQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp C-BGGGTT--THHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred c-chhhhh--hhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4 222211 123567899999999999999988754
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=148.58 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=89.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCC-------CcEEEEeec------CCC--CCCC
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-------DMRWRVMDM------TSM--QFMD 132 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~-------~i~~~~~D~------~~l--~~~~ 132 (659)
++.+|||||||+|..+..++..+..+|+|+|+|+.||+.|+++...... ++.|.+.|+ .++ ++++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 4689999999999877767666656999999999999999887654332 267888888 322 3567
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
++||+|++..+++++.+.++ ...+++++.++|||||+|++.++....
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~----~~~~l~~~~r~LkpGG~~i~~~~~~~~ 174 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRH----YATVMNNLSELTASGGKVLITTMDGDK 174 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTT----HHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred CCeeEEEECchHHHhCCHHH----HHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 89999999999987654331 469999999999999999999876443
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.50 E-value=9.5e-14 Score=141.67 Aligned_cols=113 Identities=21% Similarity=0.298 Sum_probs=92.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (659)
.+...+..++. ++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.. . .++++|+.+++++
T Consensus 43 ~~~~~l~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~---~--~~~~~d~~~~~~~ 111 (260)
T 2avn_A 43 LIGSFLEEYLK-----NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV---K--NVVEAKAEDLPFP 111 (260)
T ss_dssp HHHHHHHHHCC-----SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC---S--CEEECCTTSCCSC
T ss_pred HHHHHHHHhcC-----CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC---C--CEEECcHHHCCCC
Confidence 34445555542 568999999999999999998876 89999999999998876653 1 2899999999988
Q ss_pred CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+++||+|++.+++.++... ...+++++.++|||||++++.+...
T Consensus 112 ~~~fD~v~~~~~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 112 SGAFEAVLALGDVLSYVEN------KDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp TTCEEEEEECSSHHHHCSC------HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred CCCEEEEEEcchhhhcccc------HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 8999999998877665322 3589999999999999999988763
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=144.75 Aligned_cols=107 Identities=22% Similarity=0.276 Sum_probs=95.1
Q ss_pred CCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecc
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g 142 (659)
..++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.++++....+ .+++++++|+.++++++++||+|++..
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE 193 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence 357889999999999999999988 65 89999999999999988776554 479999999999999899999999999
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+++++ + ...+++++.++|||||++++.+...
T Consensus 194 ~l~~~-~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 194 STMYV-D-------LHDLFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp CGGGS-C-------HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred chhhC-C-------HHHHHHHHHHHcCCCcEEEEEEccc
Confidence 99998 3 3499999999999999999988653
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-14 Score=144.90 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=103.3
Q ss_pred hhhhcccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEE
Q 006149 17 DLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITN 96 (659)
Q Consensus 17 ~lp~~~~~f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~Vtg 96 (659)
.+-.....|....||+.+|.... .....-..........+.+++.. ...++.+|||||||+|..+..++..+..+|+|
T Consensus 22 ~~~~~y~~~~~~~y~~~~y~~~~-~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~g 99 (289)
T 2g72_A 22 AVASAYQRFEPRAYLRNNYAPPR-GDLCNPNGVGPWKLRCLAQTFAT-GEVSGRTLIDIGSGPTVYQLLSACSHFEDITM 99 (289)
T ss_dssp HHHHHGGGCCHHHHHHHHHSTTT-TCCSSTTSHHHHHHHHHHHHHHT-SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEE
T ss_pred HHHHHHhccCHHHHHHHHhcCcc-cchhhhhHHHHHHHHHHHHHhCC-CCCCCCeEEEECCCcChHHHHhhccCCCeEEE
Confidence 35445555776788888886541 11100000111122334455432 11256899999999999665554443459999
Q ss_pred EcCCHHHHHHHHHHhhcCCC-------------------------------CcEEEEeecCC-CCC-----CCCcccEEE
Q 006149 97 VDFSKVVISDMLRRNVRDRS-------------------------------DMRWRVMDMTS-MQF-----MDETFDVIL 139 (659)
Q Consensus 97 vD~S~~~i~~~~~~~~~~~~-------------------------------~i~~~~~D~~~-l~~-----~~~sFDvVi 139 (659)
+|+|+.|++.++++...... .+.++++|+.+ +|+ ++++||+|+
T Consensus 100 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~ 179 (289)
T 2g72_A 100 TDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALV 179 (289)
T ss_dssp ECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEE
T ss_pred eCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEE
Confidence 99999999988775432110 14577789988 553 456799999
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+..+++++.... .....+++++.++|||||+|++..
T Consensus 180 ~~~~l~~~~~~~---~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 180 SAFCLEAVSPDL---ASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp EESCHHHHCSSH---HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ehhhhhhhcCCH---HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999965431 125699999999999999999975
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=141.58 Aligned_cols=106 Identities=21% Similarity=0.296 Sum_probs=94.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.++++......+++++++|+.+++++ ++||+|++..++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l 99 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL 99 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECChh
Confidence 46789999999999999999987 2 25999999999999999888766666899999999998874 799999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++.+.. .++++++++|||||++++.+..
T Consensus 100 ~~~~~~~-------~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 100 LHMTTPE-------TMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGCSSHH-------HHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCCCHH-------HHHHHHHHHcCCCCEEEEEecc
Confidence 9987644 9999999999999999998865
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-13 Score=128.94 Aligned_cols=113 Identities=10% Similarity=0.108 Sum_probs=85.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CCCCcccEEEec-cc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FMDETFDVILDK-GG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~~~sFDvVi~~-g~ 143 (659)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++....+ .++++++.|+..++ +.+++||+|++. +.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 467899999999999999999885 499999999999999988775544 68999998887753 457899999876 33
Q ss_pred ccccCC-cccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALME-PELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~-~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+..... ..........+++++.++|||||++++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 222000 0001122568899999999999999998875
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.7e-14 Score=143.46 Aligned_cols=114 Identities=20% Similarity=0.253 Sum_probs=95.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC-CCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF-MDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~-~~~sFDvVi~~g~ 143 (659)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++++....+ .++.++++|+.++++ ++++||+|++.++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 3678999999999999999988877799999999999999988765443 368999999999888 6789999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
+++..... .....+++++.++|+|||++++.+.....
T Consensus 143 l~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 179 (298)
T 1ri5_A 143 FHYAFSTS---ESLDIAQRNIARHLRPGGYFIMTVPSRDV 179 (298)
T ss_dssp GGGGGSSH---HHHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred hhhhcCCH---HHHHHHHHHHHHhcCCCCEEEEEECCHHH
Confidence 98742111 12679999999999999999999876443
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=135.78 Aligned_cols=120 Identities=23% Similarity=0.316 Sum_probs=99.4
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (659)
+......+...+. ++.+|||+|||+|.++..+++. .+|+++|+|+.+++.++++......+++++++|+.+++
T Consensus 20 ~~~~~~~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 92 (243)
T 3d2l_A 20 YPEWVAWVLEQVE-----PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE 92 (243)
T ss_dssp HHHHHHHHHHHSC-----TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC
T ss_pred HHHHHHHHHHHcC-----CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC
Confidence 3445555666664 4689999999999999999887 59999999999999998877666678999999999988
Q ss_pred CCCCcccEEEecc-cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 130 FMDETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 130 ~~~~sFDvVi~~g-~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++ ++||+|++.. +++++.+.+ ....+++++.++|+|||++++.....
T Consensus 93 ~~-~~fD~v~~~~~~~~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 93 LP-EPVDAITILCDSLNYLQTEA----DVKQTFDSAARLLTDGGKLLFDVHSP 140 (243)
T ss_dssp CS-SCEEEEEECTTGGGGCCSHH----HHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CC-CCcCEEEEeCCchhhcCCHH----HHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence 76 8999999986 888875433 26789999999999999999876653
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=136.33 Aligned_cols=134 Identities=19% Similarity=0.256 Sum_probs=102.7
Q ss_pred HhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHH
Q 006149 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (659)
Q Consensus 28 ~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~ 107 (659)
.++|+..+.... ..|......+...+..++ .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.+
T Consensus 9 a~~yd~~~~~~~----~~~~~~~~~~~~~l~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a 78 (239)
T 3bxo_A 9 ADVYDLFYLGRG----KDYAAEASDIADLVRSRT-----PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHA 78 (239)
T ss_dssp HHHHHHHHHHHT----CCHHHHHHHHHHHHHHHC-----TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHH
T ss_pred HHHHHHHhhccH----hhHHHHHHHHHHHHHHhc-----CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHH
Confidence 568888776531 112222223334444444 2578999999999999999998876 999999999999988
Q ss_pred HHHhhcCCCCcEEEEeecCCCCCCCCcccEEEe-cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 108 LRRNVRDRSDMRWRVMDMTSMQFMDETFDVILD-KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 108 ~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~-~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++. +++.++++|+.++++ +++||+|++ .++++++.+++ ....+++++.++|+|||++++.++.
T Consensus 79 ~~~~----~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 79 RKRL----PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTE----ELGAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp HHHC----TTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHH----HHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred HHhC----CCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHH----HHHHHHHHHHHhcCCCeEEEEEecc
Confidence 6653 569999999999887 689999995 55888886533 2679999999999999999998654
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=137.59 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=90.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++ .+++.++++|+.+++ ++++||+|++..+++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~----~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 106 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR----LPNTNFGKADLATWK-PAQKADLLYANAVFQ 106 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH----STTSEEEECCTTTCC-CSSCEEEEEEESCGG
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CCCcEEEECChhhcC-ccCCcCEEEEeCchh
Confidence 56789999999999999999887 234899999999999987665 468999999999988 788999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++.+. ..+++++.++|+|||++++.+..
T Consensus 107 ~~~~~-------~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 107 WVPDH-------LAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp GSTTH-------HHHHHHHGGGEEEEEEEEEEEEC
T ss_pred hCCCH-------HHHHHHHHHhcCCCeEEEEEeCC
Confidence 98654 48999999999999999998864
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-13 Score=139.52 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=95.9
Q ss_pred CCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecc
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g 142 (659)
..++.+|||+|||+|.++..+++. | .+|+|+|+|+.+++.++++....+ .+++++++|+.++ +++||+|++.+
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~ 145 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLG 145 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEES
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcc
Confidence 367889999999999999999988 7 599999999999999988776544 3799999999886 68999999999
Q ss_pred cccccCCccc--chHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 143 GLDALMEPEL--GHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 143 ~l~~l~~~~~--~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+++++.+++. +......+++++.++|||||++++.++..+
T Consensus 146 ~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 146 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp CGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred hHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 9999976521 112367999999999999999999887644
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-13 Score=137.34 Aligned_cols=107 Identities=17% Similarity=0.244 Sum_probs=92.2
Q ss_pred CCCCCeEEEECCCcchHHHHHHH-cCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecc
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~-~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g 142 (659)
..++.+|||+|||+|.++..+++ .|. +|+|+|+|+.+++.++++....+ +++.++++|+.+++ ++||+|++.+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~ 137 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIG 137 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeC
Confidence 36788999999999999999985 466 99999999999999988775543 57999999998765 7899999999
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+++++...+ ...+++++.++|||||++++.++..
T Consensus 138 ~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 138 AFEHFGHER-----YDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp CGGGTCTTT-----HHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred chhhcChHH-----HHHHHHHHHHhcCCCCEEEEEEecC
Confidence 999986433 5699999999999999999988754
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=126.64 Aligned_cols=156 Identities=12% Similarity=0.113 Sum_probs=109.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC-CCCCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-FMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~-~~~~sFDvVi~~ 141 (659)
.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.++++....+ ++++++++|+.+++ +.+++||+|++.
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence 36789999999999999999887 34599999999999999988766543 57999999998875 566899999987
Q ss_pred ccccccCCc--ccchHHHHHHHHHHHhccccCeEEEEEEcCCch-------hhcchhhhh-ccCceEEEeeeCCCCCCCC
Q 006149 142 GGLDALMEP--ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH-------VLGLLFPKF-RFGWKMSVHAIPQKSSSEP 211 (659)
Q Consensus 142 g~l~~l~~~--~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~-------~~~~l~~~~-~~~w~~~~~~i~~~~~~~~ 211 (659)
..+....+. .........+++++.++|||||++++..+.... ....+.... ...|.+....+.. ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~----~~ 176 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFIN----QA 176 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETT----CC
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEecc----Cc
Confidence 655110000 001112457999999999999999998864211 111222222 2367776555543 23
Q ss_pred CCccEEEEEEecCCc
Q 006149 212 SLQTFMVVADKENSS 226 (659)
Q Consensus 212 ~l~~f~~v~~k~~~~ 226 (659)
..++|.++.+|....
T Consensus 177 ~~pp~~~~~~~~~~~ 191 (197)
T 3eey_A 177 NCPPILVCIEKISEG 191 (197)
T ss_dssp SCCCEEEEEEECCSS
T ss_pred cCCCeEEEEEEcccc
Confidence 457788888876543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=128.16 Aligned_cols=119 Identities=13% Similarity=-0.023 Sum_probs=96.5
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (659)
..++...+...+.. .++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++....+ ++++++++|+.+
T Consensus 25 ~~~i~~~~l~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 101 (204)
T 3e05_A 25 KQEVRAVTLSKLRL---QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPE 101 (204)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTT
T ss_pred hHHHHHHHHHHcCC---CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhh
Confidence 34555666666654 578899999999999999999885 3699999999999999887765433 679999999977
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.....++||+|++.++++. ...+++++.++|+|||++++.....
T Consensus 102 ~~~~~~~~D~i~~~~~~~~----------~~~~l~~~~~~LkpgG~l~~~~~~~ 145 (204)
T 3e05_A 102 GLDDLPDPDRVFIGGSGGM----------LEEIIDAVDRRLKSEGVIVLNAVTL 145 (204)
T ss_dssp TCTTSCCCSEEEESCCTTC----------HHHHHHHHHHHCCTTCEEEEEECBH
T ss_pred hhhcCCCCCEEEECCCCcC----------HHHHHHHHHHhcCCCeEEEEEeccc
Confidence 5434478999998877651 4589999999999999999988763
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-13 Score=139.71 Aligned_cols=111 Identities=19% Similarity=0.258 Sum_probs=87.7
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC---
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF--- 130 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~--- 130 (659)
...+...+.. .++.+|||+|||+|.++..|++.+. +|+++|+|+.|++.++++.... ++++++.+++.
T Consensus 34 ~~~il~~l~l---~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~-----~v~~~~~~~~~~~~ 104 (261)
T 3iv6_A 34 RENDIFLENI---VPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR-----CVTIDLLDITAEIP 104 (261)
T ss_dssp HHHHHHTTTC---CTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS-----CCEEEECCTTSCCC
T ss_pred HHHHHHhcCC---CCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc-----cceeeeeecccccc
Confidence 3445555554 5788999999999999999999986 9999999999999887776433 34455544433
Q ss_pred --CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 131 --MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 131 --~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+++||+|++..+++++...+ ...++.++.++| |||++++...
T Consensus 105 ~~~~~~fD~Vv~~~~l~~~~~~~-----~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 105 KELAGHFDFVLNDRLINRFTTEE-----ARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp GGGTTCCSEEEEESCGGGSCHHH-----HHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cccCCCccEEEEhhhhHhCCHHH-----HHHHHHHHHHhC-cCcEEEEEec
Confidence 257899999999999875443 668999999999 9999998764
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-12 Score=127.42 Aligned_cols=137 Identities=16% Similarity=0.155 Sum_probs=100.4
Q ss_pred CCCCeEEEECCC-cchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-CCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCG-NSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-QFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG-~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l-~~~~~sFDvVi~~g~l 144 (659)
.++.+|||+||| +|.++..++.....+|+|+|+++.+++.++++....+.+++++++|+..+ ++++++||+|+++..+
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~ 133 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY 133 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence 468899999999 99999999988334999999999999999887766556899999997654 4567899999988666
Q ss_pred cccCCcc------------cchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh-ccCceEEEeee
Q 006149 145 DALMEPE------------LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAI 203 (659)
Q Consensus 145 ~~l~~~~------------~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~-~~~w~~~~~~i 203 (659)
....... .+......+++++.++|||||++++...........+...+ ..+|.+....+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 205 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKF 205 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEe
Confidence 5433211 11122478999999999999999998765443334444444 34776665554
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.2e-14 Score=140.31 Aligned_cols=114 Identities=18% Similarity=0.082 Sum_probs=91.4
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFM 131 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~ 131 (659)
...+.+.+. .++.+|||||||+|..+..+++.+..+||+||+|+.+++.++++......++.++.+|+.+. +++
T Consensus 50 m~~~a~~~~----~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~ 125 (236)
T 3orh_A 50 MHALAAAAS----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP 125 (236)
T ss_dssp HHHHHHHHT----TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC
T ss_pred HHHHHHhhc----cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccccc
Confidence 344555554 37889999999999999999887556899999999999999888877778899999998764 577
Q ss_pred CCcccEEEecc-----cccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 132 DETFDVILDKG-----GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 132 ~~sFDvVi~~g-----~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+++||.|+... .+.++. ....+++++.|+|||||+|++..
T Consensus 126 ~~~FD~i~~D~~~~~~~~~~~~-------~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 126 DGHFDGILYDTYPLSEETWHTH-------QFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp TTCEEEEEECCCCCBGGGTTTH-------HHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccCCceEEEeeeecccchhhhc-------chhhhhhhhhheeCCCCEEEEEe
Confidence 89999997432 222322 25689999999999999998764
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.8e-13 Score=138.43 Aligned_cols=108 Identities=10% Similarity=0.144 Sum_probs=93.6
Q ss_pred CCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecc
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g 142 (659)
..++.+|||+|||+|.++..+++. |. +|+++|+|+.+++.++++....+ +++.++++|+.+++ ++||+|++.+
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~ 163 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIE 163 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeC
Confidence 367889999999999999999987 76 99999999999999988776544 46999999998874 7899999999
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+++++...+ ...+++++.++|||||++++.++..+
T Consensus 164 ~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 164 AFEHFGHEN-----YDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp CGGGTCGGG-----HHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred hHHhcCHHH-----HHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 999985433 56999999999999999999887643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-12 Score=134.75 Aligned_cols=148 Identities=14% Similarity=0.086 Sum_probs=103.8
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHH-HHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEE
Q 006149 43 SFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS-EHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRW 120 (659)
Q Consensus 43 ~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s-~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~ 120 (659)
.|.+|..|..+...-..++.. .++.+|||||||+|.++ ..+++....+|+|+|+++.+++.++++....+ .++++
T Consensus 100 ~fpy~~~~~~l~~~E~~la~l---~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~ 176 (298)
T 3fpf_A 100 SFYFYPRYLELLKNEAALGRF---RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNV 176 (298)
T ss_dssp TSTTHHHHHHHHHHHHHHTTC---CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEE
T ss_pred cCCCcccHHHHHHHHHHHcCC---CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEE
Confidence 344555555554443444443 68899999999999876 44555433599999999999999988765433 68999
Q ss_pred EEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc-hhhc-chhhhhccCceE
Q 006149 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES-HVLG-LLFPKFRFGWKM 198 (659)
Q Consensus 121 ~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~-~~~~-~l~~~~~~~w~~ 198 (659)
+++|+.+++ +++||+|+..+. ..+ ..++++++.++|||||++++...... .... ........+|..
T Consensus 177 v~gDa~~l~--d~~FDvV~~~a~---~~d-------~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~gf~~ 244 (298)
T 3fpf_A 177 ITGDETVID--GLEFDVLMVAAL---AEP-------KRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRR 244 (298)
T ss_dssp EESCGGGGG--GCCCSEEEECTT---CSC-------HHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGTTEEE
T ss_pred EECchhhCC--CCCcCEEEECCC---ccC-------HHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhhhhhh
Confidence 999999875 789999997554 222 45999999999999999999885321 1111 111233457877
Q ss_pred EEeeeCC
Q 006149 199 SVHAIPQ 205 (659)
Q Consensus 199 ~~~~i~~ 205 (659)
.....+.
T Consensus 245 ~~~~~p~ 251 (298)
T 3fpf_A 245 AGVVLPS 251 (298)
T ss_dssp EEEECCC
T ss_pred eeEECCC
Confidence 7666554
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-13 Score=134.76 Aligned_cols=136 Identities=11% Similarity=0.045 Sum_probs=102.3
Q ss_pred CCCHhhHHHHHh--hcCCCCcccc--ccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCC
Q 006149 25 FTSKENWDKFFT--IRGIGDSFEW--YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFS 100 (659)
Q Consensus 25 f~~~eyWd~~y~--~~~~~~~few--y~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S 100 (659)
|....+|+..|. .. ..++.. ....+.+...+.+.+.. .++.+|||+|||+|.++..++..+ .+|+++|++
T Consensus 28 f~~~~~~~~~Y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~ 101 (231)
T 1vbf_A 28 FLPENLKDYAYAHTHE--ALPILPGINTTALNLGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEIN 101 (231)
T ss_dssp HSCGGGGGGSSSSTTC--CEEEETTEEECCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESC
T ss_pred cCCcchhhhccccCCC--ceeeCCCCccCCHHHHHHHHHhcCC---CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCC
Confidence 445567776666 33 111111 11234555566666654 577899999999999999999987 599999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 101 KVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 101 ~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.+++.++++....+ ++.++++|+.+....+++||+|++..+++++. .++.++|+|||++++....
T Consensus 102 ~~~~~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~-------------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 102 EKMYNYASKLLSYYN-NIKLILGDGTLGYEEEKPYDRVVVWATAPTLL-------------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp HHHHHHHHHHHTTCS-SEEEEESCGGGCCGGGCCEEEEEESSBBSSCC-------------HHHHHTEEEEEEEEEEECS
T ss_pred HHHHHHHHHHHhhcC-CeEEEECCcccccccCCCccEEEECCcHHHHH-------------HHHHHHcCCCcEEEEEEcC
Confidence 999999887765444 89999999988433467899999999998763 3688999999999999764
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-13 Score=132.60 Aligned_cols=96 Identities=21% Similarity=0.224 Sum_probs=84.8
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccC
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~ 148 (659)
+.+|||+|||+|.++..++.. +++|+|+.+++.++++ ++.++++|+.++++++++||+|++..+++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR------GVFVLKGTAENLPLKDESFDFALMVTTICFVD 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc------CCEEEEcccccCCCCCCCeeEEEEcchHhhcc
Confidence 689999999999999988654 9999999999877554 68999999999998888999999999999986
Q ss_pred CcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 149 ~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+. ..+++++.++|+|||++++.+....
T Consensus 117 ~~-------~~~l~~~~~~L~pgG~l~i~~~~~~ 143 (219)
T 1vlm_A 117 DP-------ERALKEAYRILKKGGYLIVGIVDRE 143 (219)
T ss_dssp CH-------HHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred CH-------HHHHHHHHHHcCCCcEEEEEEeCCc
Confidence 54 4899999999999999999887643
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=132.52 Aligned_cols=139 Identities=16% Similarity=0.086 Sum_probs=104.2
Q ss_pred CCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHH
Q 006149 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (659)
Q Consensus 25 f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i 104 (659)
|....+|...|...........+...+.....+.+.+.. .++.+|||+|||+|.++..+++.+ .+|+++|+++.++
T Consensus 37 f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~ 112 (210)
T 3lbf_A 37 FVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLEL---TPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQ 112 (210)
T ss_dssp GSCGGGGGGTTSSSCEECTTSCEECCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHH
T ss_pred cCCcchhhhccCCCccccCCCCEeCCHHHHHHHHHhcCC---CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHH
Confidence 445556665555431001111122244555666677654 678899999999999999999986 4999999999999
Q ss_pred HHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 105 SDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 105 ~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.++++....+ .+++++++|+.+...++++||+|++.++++++.+ ++.++|+|||++++....
T Consensus 113 ~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~-------------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 113 WQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPT-------------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp HHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCSSCCT-------------HHHHTEEEEEEEEEEECS
T ss_pred HHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchhhhhH-------------HHHHhcccCcEEEEEEcC
Confidence 99987765543 5799999999987666789999999999888642 578999999999998765
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-13 Score=133.82 Aligned_cols=101 Identities=23% Similarity=0.320 Sum_probs=85.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC---CCCC-CcccEEEecc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM---QFMD-ETFDVILDKG 142 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l---~~~~-~sFDvVi~~g 142 (659)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++ .++.+.++|+.++ ++.. ++||+|++..
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~ 124 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYDLICANF 124 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-----cccccchhhHHhhcccccccCCCccEEEECc
Confidence 3568999999999999999999876 999999999999877554 5678899988877 4444 4599999999
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+++ ..+. ..+++++.++|||||++++.++..
T Consensus 125 ~l~-~~~~-------~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 125 ALL-HQDI-------IELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp CCC-SSCC-------HHHHHHHHHTEEEEEEEEEEECCT
T ss_pred hhh-hhhH-------HHHHHHHHHHhCCCeEEEEEecCc
Confidence 999 4443 489999999999999999998764
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-12 Score=126.58 Aligned_cols=117 Identities=13% Similarity=0.065 Sum_probs=93.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-C-CcEEEEeecCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-S-DMRWRVMDMTSM 128 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~-~i~~~~~D~~~l 128 (659)
..+...+...+.. .++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++....+ + ++.++++|+.+.
T Consensus 41 ~~~~~~~l~~l~~---~~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 116 (204)
T 3njr_A 41 SPMRALTLAALAP---RRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA 116 (204)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred HHHHHHHHHhcCC---CCCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence 3555566667664 577899999999999999999985 499999999999999887765544 4 799999999884
Q ss_pred CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
.....+||+|++.+.+ . .. +++++.++|||||++++.......
T Consensus 117 ~~~~~~~D~v~~~~~~------~-----~~-~l~~~~~~LkpgG~lv~~~~~~~~ 159 (204)
T 3njr_A 117 LADLPLPEAVFIGGGG------S-----QA-LYDRLWEWLAPGTRIVANAVTLES 159 (204)
T ss_dssp GTTSCCCSEEEECSCC------C-----HH-HHHHHHHHSCTTCEEEEEECSHHH
T ss_pred cccCCCCCEEEECCcc------c-----HH-HHHHHHHhcCCCcEEEEEecCccc
Confidence 3334689999987644 1 34 899999999999999999876443
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-13 Score=141.07 Aligned_cols=108 Identities=15% Similarity=0.093 Sum_probs=82.6
Q ss_pred CCCCeEEEECCCcchHHHHH----HHc-CCCeE--EEEcCCHHHHHHHHHHhhcC--CCCcEE--EEeecCCCC------
Q 006149 67 SPPPQILVPGCGNSRLSEHL----YDA-GFHGI--TNVDFSKVVISDMLRRNVRD--RSDMRW--RVMDMTSMQ------ 129 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~L----a~~-g~~~V--tgvD~S~~~i~~~~~~~~~~--~~~i~~--~~~D~~~l~------ 129 (659)
.++.+|||||||+|.++..+ +.. +...| +++|+|+.|++.++++.... .+++.+ .++++.+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 45679999999999876533 332 22333 99999999999988876542 245544 455555443
Q ss_pred CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 130 ~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+++++||+|++..+++++.++. ++|++++++|||||++++.....
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~-------~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIP-------ATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHH-------HHHHHHHHTEEEEEEEEEEEECT
T ss_pred cCCCceeEEEEeeeeeecCCHH-------HHHHHHHHHcCCCcEEEEEEecC
Confidence 5678999999999999998755 89999999999999999987654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=130.29 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=85.5
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC---
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--- 128 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l--- 128 (659)
+...+...+. ....++.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.|.+.+.. ..++.++++|+...
T Consensus 43 l~~~~~~~l~-~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-~~~v~~~~~d~~~~~~~ 120 (210)
T 1nt2_A 43 LAAMILKGHR-LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLFDASKPWKY 120 (210)
T ss_dssp HHHHHHTSCC-CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-CSSEEEECSCTTCGGGT
T ss_pred HHHHHHhhcc-cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-CCCeEEEEcCCCCchhh
Confidence 3334444433 23357889999999999999999886 335899999999998877765543 46789999999874
Q ss_pred -CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 129 -QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 129 -~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
++. ++||+|++.. ..+. ....++.+++++|||||++++..
T Consensus 121 ~~~~-~~fD~V~~~~-----~~~~----~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 121 SGIV-EKVDLIYQDI-----AQKN----QIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp TTTC-CCEEEEEECC-----CSTT----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc-cceeEEEEec-----cChh----HHHHHHHHHHHHhCCCCEEEEEE
Confidence 444 7999999862 1111 13456999999999999999985
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-13 Score=129.76 Aligned_cols=108 Identities=12% Similarity=0.027 Sum_probs=90.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDvVi~~g~l 144 (659)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++....+ .+++++++|+.+++ +++++||+|++...+
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 678999999999999998888887789999999999999887765444 58999999998863 447899999998776
Q ss_pred cccCCcccchHHHHHHHHHHHh--ccccCeEEEEEEcCC
Q 006149 145 DALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTLAE 181 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~r--vLkpGG~lvi~~~~~ 181 (659)
++.. . ....++..+.+ +|+|||++++.....
T Consensus 124 ~~~~-~-----~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 124 NVDS-A-----DVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TSCH-H-----HHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred Ccch-h-----hHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 6531 1 25689999999 999999999987653
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=134.84 Aligned_cols=116 Identities=15% Similarity=0.204 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc-----CCCC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQ 589 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F-----gl~~ 589 (659)
.+.||++|++ ++++. ++++.+||+||+|+|.+++.+.++.|..+|++|||||.|+++|+++| ++ .
T Consensus 58 e~~y~e~l~~-~~l~~--------~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~-~ 127 (275)
T 1iy9_A 58 EFVYHEMVAH-VPLFT--------HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL-D 127 (275)
T ss_dssp HHHHHHHHHH-HHHHH--------SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT-T
T ss_pred hhHHHHHHHH-HHHhh--------CCCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc-C
Confidence 4789998775 34432 25678999999999999999999877789999999999999999999 44 4
Q ss_pred CCCeeEE-----------------------------ecccchhHHHHHHHhhccCCCCcEEEecCc-----hH-HHHHHH
Q 006149 590 DKSLKVF-----------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNSF-----PE-AAVQLG 634 (659)
Q Consensus 590 d~rl~vf-----------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~~-----~~-~~~~l~ 634 (659)
++|++++ .+|++.+|++.++++| +++|+++.|.. .. ....++
T Consensus 128 ~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L---~pgG~lv~~~~~~~~~~~~~~~~~~ 204 (275)
T 1iy9_A 128 DPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKAL---KEDGIFVAQTDNPWFTPELITNVQR 204 (275)
T ss_dssp STTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHE---EEEEEEEEECCCTTTCHHHHHHHHH
T ss_pred CCceEEEECcHHHHHhhCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhc---CCCcEEEEEcCCccccHHHHHHHHH
Confidence 5566322 2456789999999999 99999999852 22 233445
Q ss_pred hhcc-CCccc
Q 006149 635 KLVK-FQHLE 643 (659)
Q Consensus 635 ~~~~-f~~~~ 643 (659)
.+.+ |++..
T Consensus 205 ~l~~~F~~v~ 214 (275)
T 1iy9_A 205 DVKEIFPITK 214 (275)
T ss_dssp HHHTTCSEEE
T ss_pred HHHHhCCCeE
Confidence 5555 87644
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.7e-13 Score=144.80 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=92.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcC---------CCCcEEEEeecCCC------C
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD---------RSDMRWRVMDMTSM------Q 129 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~---------~~~i~~~~~D~~~l------~ 129 (659)
.++.+|||+|||+|.++..+++. ...+|+|+|+|+.+++.++++.... .++++++++|+.++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 46789999999999999999886 2359999999999999887665321 26899999999997 8
Q ss_pred CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 130 ~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++++||+|++..+++++.+. ..+++++.++|||||++++.++.
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~-------~~~l~~~~r~LkpgG~l~i~~~~ 205 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK-------LALFKEIHRVLRDGGELYFSDVY 205 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH-------HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCCCEEEEEEccchhcCCCH-------HHHHHHHHHHcCCCCEEEEEEec
Confidence 888999999999999998664 49999999999999999998754
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.8e-13 Score=126.57 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=95.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (659)
..+...+...+.. .++.+|||+|||+|.++..++..+ .+|+++|+++.+++.++++....+ .++.+.++|+.+
T Consensus 19 ~~~~~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~- 93 (192)
T 1l3i_A 19 MEVRCLIMCLAEP---GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE- 93 (192)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-
Confidence 4556666776654 577899999999999999999887 699999999999998887665443 479999999877
Q ss_pred CCCC-CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 129 QFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 129 ~~~~-~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
+++. ++||+|++.+++++ ...+++++.++|+|||++++.......
T Consensus 94 ~~~~~~~~D~v~~~~~~~~----------~~~~l~~~~~~l~~gG~l~~~~~~~~~ 139 (192)
T 1l3i_A 94 ALCKIPDIDIAVVGGSGGE----------LQEILRIIKDKLKPGGRIIVTAILLET 139 (192)
T ss_dssp HHTTSCCEEEEEESCCTTC----------HHHHHHHHHHTEEEEEEEEEEECBHHH
T ss_pred hcccCCCCCEEEECCchHH----------HHHHHHHHHHhcCCCcEEEEEecCcch
Confidence 3333 58999999877654 358999999999999999998876433
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-13 Score=140.31 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=87.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-------------------------------
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR------------------------------- 115 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~------------------------------- 115 (659)
++.+|||||||+|.++..++.. +..+|+|+|+|+.+++.++++.....
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 5789999999999999999987 44699999999999998876643221
Q ss_pred ----------------------------CCcEEEEeecCCCC-----CCCCcccEEEecccccccCCcccchHHHHHHHH
Q 006149 116 ----------------------------SDMRWRVMDMTSMQ-----FMDETFDVILDKGGLDALMEPELGHKLGNQYLS 162 (659)
Q Consensus 116 ----------------------------~~i~~~~~D~~~l~-----~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ 162 (659)
.+++|+++|+...+ +.+++||+|++..+++++.-. .+.....++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~-~~~~~~~~~l~ 204 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLN-WGDEGLKRMFR 204 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHH-HHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhc-CCHHHHHHHHH
Confidence 47999999998754 567899999999999776200 01112679999
Q ss_pred HHHhccccCeEEEEEE
Q 006149 163 EVKRLLKSGGKFVCLT 178 (659)
Q Consensus 163 ei~rvLkpGG~lvi~~ 178 (659)
+++++|+|||+|++..
T Consensus 205 ~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 205 RIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHEEEEEEEEEEC
T ss_pred HHHHHhCCCcEEEEec
Confidence 9999999999999864
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-12 Score=121.87 Aligned_cols=133 Identities=10% Similarity=0.126 Sum_probs=101.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~ 129 (659)
..+...+...+.. .++.+|||+|||+|.++..++. +..+|+++|+++.+++.++++....+ ++++++++|+.+ +
T Consensus 21 ~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~ 95 (183)
T 2yxd_A 21 EEIRAVSIGKLNL---NKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V 95 (183)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H
T ss_pred HHHHHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c
Confidence 4555666777654 5678999999999999999988 44599999999999999887765544 579999999988 6
Q ss_pred CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh-ccCceEEEee
Q 006149 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHA 202 (659)
Q Consensus 130 ~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~-~~~w~~~~~~ 202 (659)
+++++||+|++.++ .. ...+++++.++ |||++++.+....... .+...+ ..+|.+....
T Consensus 96 ~~~~~~D~i~~~~~----~~-------~~~~l~~~~~~--~gG~l~~~~~~~~~~~-~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 96 LDKLEFNKAFIGGT----KN-------IEKIIEILDKK--KINHIVANTIVLENAA-KIINEFESRGYNVDAVN 155 (183)
T ss_dssp GGGCCCSEEEECSC----SC-------HHHHHHHHHHT--TCCEEEEEESCHHHHH-HHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEECCc----cc-------HHHHHHHHhhC--CCCEEEEEecccccHH-HHHHHHHHcCCeEEEEE
Confidence 77789999999877 11 45889999999 9999999987644432 233333 3357666543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=137.75 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=93.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc--------CCCCcEEEEeecCCCC----CC--CC
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR--------DRSDMRWRVMDMTSMQ----FM--DE 133 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~--------~~~~i~~~~~D~~~l~----~~--~~ 133 (659)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++... ...++.++++|+.+++ ++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 5679999999999999999887666999999999999998877643 2247899999999876 53 45
Q ss_pred cccEEEeccccccc-CCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 134 TFDVILDKGGLDAL-MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 134 sFDvVi~~g~l~~l-~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
+||+|++..+++++ .+.+ ....++.++.++|||||++++.++....+
T Consensus 114 ~fD~V~~~~~l~~~~~~~~----~~~~~l~~~~~~LkpgG~li~~~~~~~~l 161 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYE----QADMMLRNACERLSPGGYFIGTTPNSFEL 161 (313)
T ss_dssp CEEEEEEETCGGGGGGSHH----HHHHHHHHHHTTEEEEEEEEEEEECHHHH
T ss_pred CEEEEEEecchhhccCCHH----HHHHHHHHHHHHhCCCcEEEEecCChHHH
Confidence 99999999999987 3322 25699999999999999999999875443
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.9e-13 Score=139.16 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=94.0
Q ss_pred CCCCeEEEECCCcchHHHHHH--HcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecc
Q 006149 67 SPPPQILVPGCGNSRLSEHLY--DAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La--~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g 142 (659)
.++.+|||+|||+|..+..++ ..+..+|+++|+|+.+++.++++....+ .+++++++|+.+++++ ++||+|++.+
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~ 195 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG 195 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence 467899999999999999985 3334599999999999999988775544 3499999999999887 9999999999
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+++++.++. ....+++++.++|||||++++.++..+
T Consensus 196 ~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~ 231 (305)
T 3ocj_A 196 LNIYEPDDA----RVTELYRRFWQALKPGGALVTSFLTPP 231 (305)
T ss_dssp SGGGCCCHH----HHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred hhhhcCCHH----HHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 999987654 244689999999999999999886643
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-12 Score=122.91 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=96.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CC--cEEEEeecCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SD--MRWRVMDMTSM 128 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~--i~~~~~D~~~l 128 (659)
.....+.+.+.. .++.+|||+|||+|.++..++..+ .+|+++|+++.+++.++++....+ .+ ++++++|+.+
T Consensus 39 ~~~~~l~~~~~~---~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~- 113 (194)
T 1dus_A 39 KGTKILVENVVV---DKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE- 113 (194)
T ss_dssp HHHHHHHHHCCC---CTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-
T ss_pred hHHHHHHHHccc---CCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-
Confidence 345566676654 477899999999999999999884 499999999999999887765543 33 9999999988
Q ss_pred CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
++++++||+|++...+++. ......+++++.++|+|||++++.+....
T Consensus 114 ~~~~~~~D~v~~~~~~~~~------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 161 (194)
T 1dus_A 114 NVKDRKYNKIITNPPIRAG------KEVLHRIIEEGKELLKDNGEIWVVIQTKQ 161 (194)
T ss_dssp TCTTSCEEEEEECCCSTTC------HHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred ccccCCceEEEECCCcccc------hhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 4456899999998776642 11256899999999999999999988743
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=129.74 Aligned_cols=90 Identities=14% Similarity=0.233 Sum_probs=78.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeec-CCCCCC-CCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM-TSMQFM-DETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~-~~l~~~-~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++ .++++++++|+ ..++++ +++||+|++.
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~---- 118 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN----APHADVYEWNGKGELPAGLGAPFGLIVSR---- 118 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH----CTTSEEEECCSCSSCCTTCCCCEEEEEEE----
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh----CCCceEEEcchhhccCCcCCCCEEEEEeC----
Confidence 678999999999999999999876 999999999999988665 46899999999 567887 8999999986
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
.+.. .+++++.++|||||+++
T Consensus 119 --~~~~-------~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 --RGPT-------SVILRLPELAAPDAHFL 139 (226)
T ss_dssp --SCCS-------GGGGGHHHHEEEEEEEE
T ss_pred --CCHH-------HHHHHHHHHcCCCcEEE
Confidence 2222 77999999999999999
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-12 Score=121.27 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=92.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-C-CcEEEEeecCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-S-DMRWRVMDMTS 127 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~-~i~~~~~D~~~ 127 (659)
..+...+...+.. .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++....+ + ++ ++++|+.+
T Consensus 11 ~~~~~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~ 86 (178)
T 3hm2_A 11 QHVRALAISALAP---KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR 86 (178)
T ss_dssp HHHHHHHHHHHCC---CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred HHHHHHHHHHhcc---cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence 3445556666654 57789999999999999999887 34589999999999999887765543 3 67 88888855
Q ss_pred CCCCC--CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 128 MQFMD--ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 128 l~~~~--~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
.++. ++||+|++.+++++ . .+++++.++|+|||++++.+...+.
T Consensus 87 -~~~~~~~~~D~i~~~~~~~~----~-------~~l~~~~~~L~~gG~l~~~~~~~~~ 132 (178)
T 3hm2_A 87 -AFDDVPDNPDVIFIGGGLTA----P-------GVFAAAWKRLPVGGRLVANAVTVES 132 (178)
T ss_dssp -GGGGCCSCCSEEEECC-TTC----T-------THHHHHHHTCCTTCEEEEEECSHHH
T ss_pred -hhhccCCCCCEEEECCcccH----H-------HHHHHHHHhcCCCCEEEEEeecccc
Confidence 3333 89999999888876 2 7899999999999999998876433
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.6e-13 Score=142.50 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=87.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.++++....+ .+++++++|+.++++++++||+|++..+.+
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence 5789999999999999999999878999999995 9998887765544 359999999999998889999999987655
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi 176 (659)
++.... ....++.++.++|||||+++.
T Consensus 145 ~l~~~~----~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 145 CLFYES----MLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp TBTBTC----CHHHHHHHHHHHEEEEEEEES
T ss_pred cccCch----hHHHHHHHHHHhCCCCCEEcc
Confidence 543222 156899999999999999883
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=129.28 Aligned_cols=109 Identities=18% Similarity=0.291 Sum_probs=91.0
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC--CCCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS--MQFMDE 133 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~--l~~~~~ 133 (659)
.+.+++. .++.+|||+|||+|.++..+++.+ .+++++|+|+.+++.++++. ..+.++|+.+ .+++++
T Consensus 24 ~l~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~------~~~~~~d~~~~~~~~~~~ 92 (230)
T 3cc8_A 24 NLLKHIK----KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL------DHVVLGDIETMDMPYEEE 92 (230)
T ss_dssp HHHTTCC----TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS------SEEEESCTTTCCCCSCTT
T ss_pred HHHHHhc----cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC------CcEEEcchhhcCCCCCCC
Confidence 3555553 367899999999999999999887 59999999999988765432 3789999987 567788
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+||+|++..+++++.++. .+++++.++|+|||++++.+....
T Consensus 93 ~fD~v~~~~~l~~~~~~~-------~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 93 QFDCVIFGDVLEHLFDPW-------AVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp CEEEEEEESCGGGSSCHH-------HHHHHTGGGEEEEEEEEEEEECTT
T ss_pred ccCEEEECChhhhcCCHH-------HHHHHHHHHcCCCCEEEEEeCCcc
Confidence 999999999999987654 899999999999999999886543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-12 Score=136.38 Aligned_cols=115 Identities=19% Similarity=0.184 Sum_probs=92.0
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (659)
+...+.+.+.. .++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.++++....+ ++++++++|+.++++
T Consensus 52 ~~~~i~~~~~~---~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 127 (340)
T 2fyt_A 52 YRDFIYQNPHI---FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL 127 (340)
T ss_dssp HHHHHHHCGGG---TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC
T ss_pred HHHHHHhhhhh---cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC
Confidence 33445554433 46789999999999999999998877999999997 8988877765544 689999999999988
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
++++||+|++..+.+.+.... ....++.++.++|||||+++
T Consensus 128 ~~~~~D~Ivs~~~~~~l~~~~----~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 128 PVEKVDVIISEWMGYFLLFES----MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCSCEEEEEECCCBTTBTTTC----HHHHHHHHHHHHEEEEEEEE
T ss_pred CCCcEEEEEEcCchhhccCHH----HHHHHHHHHHhhcCCCcEEE
Confidence 888999999987544433222 25689999999999999987
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-12 Score=125.18 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=88.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.++++....+ .++++.++|+.+.. +++||+|++...++
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--DGKFDLIVANILAE 136 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--CSCEEEEEEESCHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--CCCceEEEECCcHH
Confidence 3578999999999999999998877799999999999999888765544 34999999998753 58999999987776
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+ ...+++++.++|+|||++++.++...
T Consensus 137 ~----------~~~~l~~~~~~L~~gG~l~~~~~~~~ 163 (205)
T 3grz_A 137 I----------LLDLIPQLDSHLNEDGQVIFSGIDYL 163 (205)
T ss_dssp H----------HHHHGGGSGGGEEEEEEEEEEEEEGG
T ss_pred H----------HHHHHHHHHHhcCCCCEEEEEecCcc
Confidence 5 35889999999999999999876543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-12 Score=127.25 Aligned_cols=106 Identities=16% Similarity=0.255 Sum_probs=84.9
Q ss_pred hCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC----CCCCCCcc
Q 006149 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS----MQFMDETF 135 (659)
Q Consensus 61 l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~----l~~~~~sF 135 (659)
+......++.+|||+|||+|.++..+++. |..+|+|+|+|+.+++.+++++... +++.++++|+.+ .++. ++|
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~ 144 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYANIV-EKV 144 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTS-CCE
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCcccccccC-ccE
Confidence 43333357789999999999999999987 5469999999999999887765433 789999999998 6666 789
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
|+|+ +++..+. ....+++++.++|||||++++.
T Consensus 145 D~v~-----~~~~~~~----~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 145 DVIY-----EDVAQPN----QAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEE-----ECCCSTT----HHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEE-----EecCChh----HHHHHHHHHHHhCCCCcEEEEE
Confidence 9999 2333321 2457899999999999999986
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-12 Score=132.21 Aligned_cols=141 Identities=13% Similarity=0.157 Sum_probs=97.1
Q ss_pred HhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcch----HHHHHHHc-C----CCeEEEEc
Q 006149 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSR----LSEHLYDA-G----FHGITNVD 98 (659)
Q Consensus 28 ~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~----~s~~La~~-g----~~~VtgvD 98 (659)
.+.|+.++..-. -..-.||.+...+...-..++.. .+..+|||+|||+|. ++..|++. + ..+|+|+|
T Consensus 69 ~~e~~~l~~~lt-~~~t~FfRd~~~f~~l~~~llp~---~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atD 144 (274)
T 1af7_A 69 SAEWQAFINALT-TNLTAFFREAHHFPILAEHARRR---HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASD 144 (274)
T ss_dssp CTHHHHHHHHHC-CCCCCTTTTTTHHHHHHHHHHHS---CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEE
T ss_pred HHHHHHHHHHHh-hcCccccCChHHHHHHHHHccCC---CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 345666555431 12223455433333222223332 135799999999998 55566654 3 13899999
Q ss_pred CCHHHHHHHHHHhh--------------------c---CC---------CCcEEEEeecCCCCCC-CCcccEEEeccccc
Q 006149 99 FSKVVISDMLRRNV--------------------R---DR---------SDMRWRVMDMTSMQFM-DETFDVILDKGGLD 145 (659)
Q Consensus 99 ~S~~~i~~~~~~~~--------------------~---~~---------~~i~~~~~D~~~l~~~-~~sFDvVi~~g~l~ 145 (659)
+|+.||+.|++..- . .+ .++.|.++|+.+.+++ .++||+|+|.+++.
T Consensus 145 is~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvli 224 (274)
T 1af7_A 145 IDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMI 224 (274)
T ss_dssp SCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGG
T ss_pred CCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchH
Confidence 99999998876421 0 00 3689999999997665 57899999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
++.++. ..++++++++.|+|||++++.
T Consensus 225 yf~~~~-----~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 225 YFDKTT-----QEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp GSCHHH-----HHHHHHHHGGGEEEEEEEEEC
T ss_pred hCCHHH-----HHHHHHHHHHHhCCCcEEEEE
Confidence 885443 679999999999999999873
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.5e-12 Score=126.97 Aligned_cols=124 Identities=21% Similarity=0.247 Sum_probs=97.0
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~ 123 (659)
|......+...+.+-+.....+|+.+|||+|||+|.++..+++. | .+.|+|+|+++.|++.+++++ ...+++..+.+
T Consensus 55 w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a-~~~~ni~~V~~ 133 (233)
T 4df3_A 55 WNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVV-RDRRNIFPILG 133 (233)
T ss_dssp CCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHS-TTCTTEEEEES
T ss_pred ECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh-HhhcCeeEEEE
Confidence 54444466666777666666789999999999999999999987 4 378999999999999886665 45578999999
Q ss_pred ecCCC---CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 124 DMTSM---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 124 D~~~l---~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|.... ++..+++|+|++... +. + ....++.++.++|||||++++...
T Consensus 134 d~~~p~~~~~~~~~vDvVf~d~~--~~---~----~~~~~l~~~~r~LKpGG~lvI~ik 183 (233)
T 4df3_A 134 DARFPEKYRHLVEGVDGLYADVA--QP---E----QAAIVVRNARFFLRDGGYMLMAIK 183 (233)
T ss_dssp CTTCGGGGTTTCCCEEEEEECCC--CT---T----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eccCccccccccceEEEEEEecc--CC---h----hHHHHHHHHHHhccCCCEEEEEEe
Confidence 98764 456789999985322 11 1 145899999999999999998653
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-12 Score=130.92 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=93.6
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CC-CeEEEEcCCHH------HHHHHHHHhhcCC--CCcEEEEee-
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKV------VISDMLRRNVRDR--SDMRWRVMD- 124 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~-~~VtgvD~S~~------~i~~~~~~~~~~~--~~i~~~~~D- 124 (659)
.+...+.. .++.+|||||||+|.++..+++. |. .+|+|+|+|+. +++.++++....+ ++++++++|
T Consensus 34 ~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 34 AIAEAWQV---KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHTC---CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34444443 57889999999999999999987 43 59999999997 8988887765544 579999998
Q ss_pred --cCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 125 --MTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 125 --~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
...+++++++||+|++.++++++.++. .+++.+.++++|||++++.++..
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~-------~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASAN-------ALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHH-------HHHHHHHHHTTTCSEEEEEEECS
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHH-------HHHHHHHHHhCCCCEEEEEEecC
Confidence 455677789999999999999987654 57777777888899999998764
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=127.38 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=86.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCCCC--CCCc-ccEEEec
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQF--MDET-FDVILDK 141 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~~~D~~~l~~--~~~s-FDvVi~~ 141 (659)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++....+ ++++++++|+.++.. ++++ ||+|++.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 467999999999999998888877799999999999999987765554 489999999987532 3678 9999988
Q ss_pred ccccccCCcccchHHHHHHHHHH--HhccccCeEEEEEEcCC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEV--KRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei--~rvLkpGG~lvi~~~~~ 181 (659)
..++ . .. ...++..+ .++|+|||++++.....
T Consensus 133 ~~~~-~--~~-----~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFH-F--NL-----AEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSS-S--CH-----HHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC-C--cc-----HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 7743 1 11 45778888 77899999999888653
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.2e-12 Score=130.08 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=96.6
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEE
Q 006149 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWR 121 (659)
Q Consensus 44 fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~ 121 (659)
+.|+......+..+..++. ++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.+++.....+ .+++++
T Consensus 106 ~~f~~~~~~~~~~l~~~~~-----~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~ 180 (278)
T 2frn_A 106 IMFSPANVKERVRMAKVAK-----PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 180 (278)
T ss_dssp SCCCGGGHHHHHHHHHHCC-----TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred eeEcCCcHHHHHHHHHhCC-----CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEE
Confidence 3355555555666666663 578999999999999999999876579999999999999887765444 348999
Q ss_pred EeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 122 VMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 122 ~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++|+.+++. +++||+|++..... ...++.++.++|+|||++++.+...
T Consensus 181 ~~D~~~~~~-~~~fD~Vi~~~p~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 181 NMDNRDFPG-ENIADRILMGYVVR-----------THEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp CSCTTTCCC-CSCEEEEEECCCSS-----------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ECCHHHhcc-cCCccEEEECCchh-----------HHHHHHHHHHHCCCCeEEEEEEeec
Confidence 999999876 68999999853321 1378999999999999999988764
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=130.85 Aligned_cols=99 Identities=24% Similarity=0.340 Sum_probs=84.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++. +++.+.++|+.++++++++||+|++.++.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-- 158 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRLPFSDTSMDAIIRIYAP-- 158 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSCSBCTTCEEEEEEESCC--
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchhhCCCCCCceeEEEEeCCh--
Confidence 6789999999999999999987 2349999999999998776543 57899999999999888999999975441
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
..++++.++|||||++++.+....++
T Consensus 159 ------------~~l~~~~~~L~pgG~l~~~~~~~~~~ 184 (269)
T 1p91_A 159 ------------CKAEELARVVKPGGWVITATPGPRHL 184 (269)
T ss_dssp ------------CCHHHHHHHEEEEEEEEEEEECTTTT
T ss_pred ------------hhHHHHHHhcCCCcEEEEEEcCHHHH
Confidence 34899999999999999999876554
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-12 Score=146.16 Aligned_cols=116 Identities=15% Similarity=0.116 Sum_probs=96.7
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC--CeEEEEcCCHHHHHHHHHHhhc-------CCCCcEEEEeecC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVR-------DRSDMRWRVMDMT 126 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~--~~VtgvD~S~~~i~~~~~~~~~-------~~~~i~~~~~D~~ 126 (659)
.+.+++.. .++.+|||+|||+|.++..|++.+. .+|+|+|+|+.+++.++++... ..++++++++|+.
T Consensus 712 ~LLelL~~---~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~ 788 (950)
T 3htx_A 712 YALKHIRE---SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSIL 788 (950)
T ss_dssp HHHHHHHH---SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTT
T ss_pred HHHHHhcc---cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchH
Confidence 44555543 3678999999999999999998862 5999999999999998775432 2357999999999
Q ss_pred CCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 127 ~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++++++||+|++..+++|+.++. ...+++++.++|||| .+++.+..
T Consensus 789 dLp~~d~sFDlVV~~eVLeHL~dp~-----l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 789 EFDSRLHDVDIGTCLEVIEHMEEDQ-----ACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp SCCTTSCSCCEEEEESCGGGSCHHH-----HHHHHHHHHHTTCCS-EEEEEECB
T ss_pred hCCcccCCeeEEEEeCchhhCChHH-----HHHHHHHHHHHcCCC-EEEEEecC
Confidence 9999889999999999999987654 557999999999999 77777764
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-11 Score=118.64 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=80.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||+|.++..+++.+ +|+|+|+|+.+++. ..+++++++|+.+ ++++++||+|+++..+++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~--------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~ 91 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES--------HRGGNLVRADLLC-SINQESVDVVVFNPPYVPD 91 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT--------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTT
T ss_pred CCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc--------ccCCeEEECChhh-hcccCCCCEEEECCCCccC
Confidence 56799999999999999999887 99999999988874 4678999999988 6667899999998888765
Q ss_pred CCcc--cchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 148 MEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 148 ~~~~--~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.+.. .+......++.++.+.| |||++++....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 92 TDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp CCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred CccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 4330 00000236788888888 99999998865
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.34 E-value=8.8e-12 Score=123.27 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=87.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCcccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDvVi~~g~ 143 (659)
++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.++++....+ .++.++++|+.+++ +++++||+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 57899999999999999999873 3599999999999999887765444 68999999999876 77889999998754
Q ss_pred ccccCCcccch-HHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGH-KLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~-~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
..+........ .....++.++.++|+|||++++.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 158 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 32211000000 01257999999999999999998754
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.6e-12 Score=125.71 Aligned_cols=113 Identities=11% Similarity=0.119 Sum_probs=86.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCcccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDvVi~~g~ 143 (659)
++.+|||||||+|.++..|++. +..+|+|+|+|+.+++.++++....+ +++.++++|+.+++ +++++||.|+....
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 5679999999999999999987 34599999999999999887765544 67999999999875 77889999986543
Q ss_pred ccccCCcccchH-HHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHK-LGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~-~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
..+......... ....+++++.++|+|||.+++.+..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~ 155 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence 222111000000 0258899999999999999998854
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-13 Score=136.46 Aligned_cols=142 Identities=11% Similarity=0.128 Sum_probs=102.6
Q ss_pred CCCHhhHHHHHhhcCC-CCcc-----ccccchhH-HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEE
Q 006149 25 FTSKENWDKFFTIRGI-GDSF-----EWYAEWPQ-LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNV 97 (659)
Q Consensus 25 f~~~eyWd~~y~~~~~-~~~f-----ewy~~~~~-l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~Vtgv 97 (659)
.....||+..+..... ...+ .|+...+. +...+...+.. ..++.+|||+|||+|.++..+++.+ .+|+|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~vLD~gcG~G~~~~~la~~~-~~v~~v 106 (241)
T 3gdh_A 30 PELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQ--SFKCDVVVDAFCGVGGNTIQFALTG-MRVIAI 106 (241)
T ss_dssp GGGHHHHHTHHHHCTTGGGTCCCCHHHHHHCCCHHHHHHHHHHHHH--HSCCSEEEETTCTTSHHHHHHHHTT-CEEEEE
T ss_pred HHHHHHHHhhhhhHhhccCCceecccceeecCHHHHHHHHHHHhhh--ccCCCEEEECccccCHHHHHHHHcC-CEEEEE
Confidence 3456799887765410 0011 23322222 23334433321 0257899999999999999999988 599999
Q ss_pred cCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 98 DFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 98 D~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
|+|+.+++.++++....+ +++.++++|+.+++ ++++||+|++...+++..... ..+.++.++|+|||.++
T Consensus 107 D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~-------~~~~~~~~~L~pgG~~i 178 (241)
T 3gdh_A 107 DIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGGPDYAT-------AETFDIRTMMSPDGFEI 178 (241)
T ss_dssp ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSSGGGGG-------SSSBCTTTSCSSCHHHH
T ss_pred ECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCCcchhh-------hHHHHHHhhcCCcceeH
Confidence 999999999987776555 47999999999876 568999999998888865443 46778999999999966
Q ss_pred EE
Q 006149 176 CL 177 (659)
Q Consensus 176 i~ 177 (659)
+.
T Consensus 179 ~~ 180 (241)
T 3gdh_A 179 FR 180 (241)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.3e-12 Score=136.46 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=94.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++....+.+++++++|+.+.+.++++||+|+++..+++.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~ 311 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVG 311 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTT
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhc
Confidence 567999999999999999999976 9999999999999998877666667999999999987767899999999888863
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.... ......++.++.++|+|||+++++....
T Consensus 312 ~~~~--~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 312 GAVI--LDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp CSSC--CHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred cccc--HHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 2211 1236799999999999999999987653
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-12 Score=126.68 Aligned_cols=138 Identities=13% Similarity=0.018 Sum_probs=101.5
Q ss_pred CCCHhhHHHHHhhcCCCCccccc--cchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-C-CeEEEEcCC
Q 006149 25 FTSKENWDKFFTIRGIGDSFEWY--AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-F-HGITNVDFS 100 (659)
Q Consensus 25 f~~~eyWd~~y~~~~~~~~fewy--~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~-~~VtgvD~S 100 (659)
|....+|+..|... ..++.+. ...+.....+.+.+.. .++.+|||+|||+|.++..++..+ . .+|+++|++
T Consensus 37 ~~~~~~~~~~y~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~ 111 (215)
T 2yxe_A 37 FLPEHLKEYAYVDT--PLEIGYGQTISAIHMVGMMCELLDL---KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERI 111 (215)
T ss_dssp GSCGGGGGGTTSCS--CEEEETTEEECCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESC
T ss_pred cCCchhhhhcccCC--CccCCCCcEeCcHHHHHHHHHhhCC---CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCC
Confidence 55566777766643 1122111 1224455566666654 578899999999999999998874 2 599999999
Q ss_pred HHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 101 KVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 101 ~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.+++.++++....+ .++.+.++|+......+++||+|++..+++++. .++.++|||||++++...
T Consensus 112 ~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~-------------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 112 PELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIP-------------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSBBSSCC-------------HHHHHTEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCchHHHH-------------HHHHHHcCCCcEEEEEEC
Confidence 999998887764433 569999999865332367899999999998763 478999999999999876
Q ss_pred C
Q 006149 180 A 180 (659)
Q Consensus 180 ~ 180 (659)
.
T Consensus 179 ~ 179 (215)
T 2yxe_A 179 R 179 (215)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.3e-12 Score=125.09 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=87.3
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC---CCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS---MQF 130 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~---l~~ 130 (659)
.+...+......++.+|||+|||+|.++..|++. | ..+|+|+|+|+.+++.+.+.+... +++.++++|+.+ +++
T Consensus 65 ~~~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~ 143 (233)
T 2ipx_A 65 AILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRM 143 (233)
T ss_dssp HHHTTCSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGG
T ss_pred HHHhHHheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcc
Confidence 3433343333457889999999999999999987 3 369999999999988887666443 789999999988 345
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+++||+|++... .++ ....++.++.++|||||++++...
T Consensus 144 ~~~~~D~V~~~~~-----~~~----~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 144 LIAMVDVIFADVA-----QPD----QTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp GCCCEEEEEECCC-----CTT----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCcEEEEEEcCC-----Ccc----HHHHHHHHHHHHcCCCeEEEEEEc
Confidence 5789999998543 221 134678899999999999999654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-12 Score=121.96 Aligned_cols=121 Identities=13% Similarity=0.132 Sum_probs=92.0
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q 129 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~ 129 (659)
+...+...+.. ..++.+|||+|||+|.++..++..+..+|+++|+++.+++.++++....+ .++.++++|+.+. +
T Consensus 18 ~~~~~~~~l~~--~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 95 (177)
T 2esr_A 18 VRGAIFNMIGP--YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID 95 (177)
T ss_dssp CHHHHHHHHCS--CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH
T ss_pred HHHHHHHHHHh--hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH
Confidence 34455566642 13578999999999999999998876799999999999999887765544 4699999999883 4
Q ss_pred CCCCcccEEEecccccccCCcccchHHHHHHHHHHH--hccccCeEEEEEEcCCch
Q 006149 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 130 ~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~--rvLkpGG~lvi~~~~~~~ 183 (659)
..+++||+|++...++.. .....+..+. ++|+|||++++.......
T Consensus 96 ~~~~~fD~i~~~~~~~~~--------~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 143 (177)
T 2esr_A 96 CLTGRFDLVFLDPPYAKE--------TIVATIEALAAKNLLSEQVMVVCETDKTVL 143 (177)
T ss_dssp HBCSCEEEEEECCSSHHH--------HHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred hhcCCCCEEEECCCCCcc--------hHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence 445679999987654321 1346677776 999999999998866433
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-12 Score=136.29 Aligned_cols=106 Identities=16% Similarity=0.087 Sum_probs=89.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.++++....+ .+++++++|+.+++++ ++||+|++..+.
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMG 139 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCB
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChh
Confidence 5678999999999999999999987799999999 89998887765554 4599999999999877 899999997766
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+.+.... ....++.++.++|||||++++..
T Consensus 140 ~~l~~e~----~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 140 YFLLRES----MFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp TTBTTTC----THHHHHHHHHHHEEEEEEEESSE
T ss_pred hcccchH----HHHHHHHHHHhhCCCCeEEEEec
Confidence 6654322 15689999999999999997654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=127.62 Aligned_cols=115 Identities=15% Similarity=0.072 Sum_probs=88.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC-C--CCCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM-Q--FMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l-~--~~~~sFDvVi~~g 142 (659)
++.+|||||||+|.++..+++.. ..+|+|||+|+.+++.++++....+ .++.++++|+.++ + +++++||.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 56899999999999999999874 3589999999999999987765544 6799999999884 3 6789999999764
Q ss_pred cccccCCcccch-HHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 143 GLDALMEPELGH-KLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 143 ~l~~l~~~~~~~-~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
...+........ .....+++++.++|||||++++.+....
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~ 154 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEP 154 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence 433221111000 0012599999999999999999986543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.8e-12 Score=120.49 Aligned_cols=118 Identities=15% Similarity=0.185 Sum_probs=92.6
Q ss_pred cchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecC
Q 006149 48 AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (659)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~ 126 (659)
..+..+...+..++. +..+|||+|||+|.++..++.. +..+|+++|+|+.|++.+++++...+....+..+|..
T Consensus 34 p~ld~fY~~~~~~l~-----~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~ 108 (200)
T 3fzg_A 34 ATLNDFYTYVFGNIK-----HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKE 108 (200)
T ss_dssp GGHHHHHHHHHHHSC-----CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCH
T ss_pred HhHHHHHHHHHhhcC-----CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccc
Confidence 345555666667774 5789999999999999999876 3359999999999999998887766654444447776
Q ss_pred CCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 127 ~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.. .+.++||+|+...++|++ +.. +..+..+.+.|+|||.||-..
T Consensus 109 ~~-~~~~~~DvVLa~k~LHlL-~~~------~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 109 SD-VYKGTYDVVFLLKMLPVL-KQQ------DVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HH-HTTSEEEEEEEETCHHHH-HHT------TCCHHHHHHTCEEEEEEEEEE
T ss_pred cc-CCCCCcChhhHhhHHHhh-hhh------HHHHHHHHHHhCCCCEEEEeC
Confidence 54 456899999999999999 332 255679999999999998876
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=126.84 Aligned_cols=108 Identities=15% Similarity=0.075 Sum_probs=89.5
Q ss_pred CCCeEEEECCCc---chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----------CCC
Q 006149 68 PPPQILVPGCGN---SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------FMD 132 (659)
Q Consensus 68 ~~~~ILDiGCG~---G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----------~~~ 132 (659)
...+|||||||+ |.++..+... ...+|+++|+|+.|++.++++.. ..++++++++|+.+.+ ++.
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~-~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA-KDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT-TCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC-CCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 457999999999 9888776654 23599999999999998877763 3468999999997631 333
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++||+|++.++++++.+.+ ...+|+++.++|+|||+|++.++..
T Consensus 156 ~~~d~v~~~~vlh~~~d~~-----~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPDV-----VDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp TSCCEEEETTTGGGSCTTT-----HHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCEEEEEechhhhCCcHH-----HHHHHHHHHHhCCCCcEEEEEEecC
Confidence 5899999999999998754 5699999999999999999998764
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-11 Score=121.69 Aligned_cols=118 Identities=18% Similarity=0.256 Sum_probs=94.5
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeec
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDM 125 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~ 125 (659)
++.....+...+.. .++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.+++..... .+++.+.++|+
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~ 157 (258)
T 2pwy_A 81 YPKDASAMVTLLDL---APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKL 157 (258)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCG
T ss_pred cchHHHHHHHHcCC---CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECch
Confidence 33344455565554 57889999999999999999987 4 469999999999999988776543 36899999999
Q ss_pred CCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 126 ~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
.+.++++++||+|++. ..++. .++.++.++|+|||++++.+....
T Consensus 158 ~~~~~~~~~~D~v~~~-----~~~~~-------~~l~~~~~~L~~gG~l~~~~~~~~ 202 (258)
T 2pwy_A 158 EEAELEEAAYDGVALD-----LMEPW-------KVLEKAALALKPDRFLVAYLPNIT 202 (258)
T ss_dssp GGCCCCTTCEEEEEEE-----SSCGG-------GGHHHHHHHEEEEEEEEEEESCHH
T ss_pred hhcCCCCCCcCEEEEC-----CcCHH-------HHHHHHHHhCCCCCEEEEEeCCHH
Confidence 9987888899999972 23332 789999999999999999987643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-12 Score=128.54 Aligned_cols=113 Identities=13% Similarity=0.085 Sum_probs=83.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc-------CCCCcEEEEeecCC-CC--CCCCccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-------DRSDMRWRVMDMTS-MQ--FMDETFD 136 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~-------~~~~i~~~~~D~~~-l~--~~~~sFD 136 (659)
++.+|||||||+|.++..|+.. +..+|+|||+|+.+++.++++... ...++.++++|+.+ ++ +++++||
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 5679999999999999999987 346899999999999988765432 34689999999987 56 7789999
Q ss_pred EEEecccccccCCcccchH-HHHHHHHHHHhccccCeEEEEEEcC
Q 006149 137 VILDKGGLDALMEPELGHK-LGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~-~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.|+....-.+......... ....+++++.++|||||.+++.+..
T Consensus 126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp EEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 9986433222110000000 0147999999999999999998865
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.2e-12 Score=126.86 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=101.7
Q ss_pred CCCCHhhHHHHHhhcCCCCccc--cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCH
Q 006149 24 DFTSKENWDKFFTIRGIGDSFE--WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101 (659)
Q Consensus 24 ~f~~~eyWd~~y~~~~~~~~fe--wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~ 101 (659)
.|....+|+..|... ...+. .....+.+...+.+.+.. .++.+|||+|||+|.++..+++.+..+|+++|+++
T Consensus 50 ~f~~~~~~~~~y~~~--~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~ 124 (235)
T 1jg1_A 50 LSVEDKYKKYAHIDE--PLPIPAGQTVSAPHMVAIMLEIANL---KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIP 124 (235)
T ss_dssp GGSCGGGGGGTTSSS--CEECSTTCEECCHHHHHHHHHHHTC---CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCH
T ss_pred hhCCchhhhcCccCC--CcccCCCceeccHHHHHHHHHhcCC---CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCH
Confidence 456666777766544 12221 122234556666777754 57789999999999999999987425999999999
Q ss_pred HHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCC-cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 102 VVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDE-TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 102 ~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~-sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+++.++++....+ .++.+.++|+ ..++++. .||+|++..+++++. .++.++|+|||++++...
T Consensus 125 ~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~~~~~~~-------------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 125 ELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTAGAPKIP-------------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECSBBSSCC-------------HHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECCcHHHHH-------------HHHHHhcCCCcEEEEEEe
Confidence 99999887765443 5699999998 3355444 599999998887652 367899999999999886
Q ss_pred C
Q 006149 180 A 180 (659)
Q Consensus 180 ~ 180 (659)
.
T Consensus 191 ~ 191 (235)
T 1jg1_A 191 S 191 (235)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=132.00 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=92.9
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (659)
+...+.+.+.. .++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.++++....+ ++++++++|+.++++
T Consensus 38 y~~~i~~~l~~---~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 113 (348)
T 2y1w_A 38 YQRAILQNHTD---FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL 113 (348)
T ss_dssp HHHHHHHTGGG---TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC
T ss_pred HHHHHHhcccc---CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC
Confidence 33445555443 46789999999999999999998877999999997 7777776665444 579999999999876
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
+ ++||+|++.++++++.... ....+.++.++|||||++++.
T Consensus 114 ~-~~~D~Ivs~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 114 P-EQVDIIISEPMGYMLFNER-----MLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp S-SCEEEEEECCCBTTBTTTS-----HHHHHHHGGGGEEEEEEEESC
T ss_pred C-CceeEEEEeCchhcCChHH-----HHHHHHHHHhhcCCCeEEEEe
Confidence 5 6899999998888876544 557888999999999999854
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.30 E-value=8.3e-12 Score=125.85 Aligned_cols=101 Identities=16% Similarity=0.078 Sum_probs=83.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCC---CCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFM---DETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~---~~sFDvVi~~g 142 (659)
++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.+++.....+ .+++++++|+.+++++ +++||+|++..
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 5689999999999999999864 33589999999999998877655433 4799999999887754 57999999866
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
. .+ ...+++.+.++|+|||++++...
T Consensus 150 ~----~~-------~~~~l~~~~~~LkpgG~l~~~~g 175 (240)
T 1xdz_A 150 V----AR-------LSVLSELCLPLVKKNGLFVALKA 175 (240)
T ss_dssp C----SC-------HHHHHHHHGGGEEEEEEEEEEEC
T ss_pred c----CC-------HHHHHHHHHHhcCCCCEEEEEeC
Confidence 2 22 45899999999999999998753
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=121.62 Aligned_cols=128 Identities=21% Similarity=0.359 Sum_probs=94.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++..++ .+|+++|+|+. ++.++++|+.++++++++||+|++..++++
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~--------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 127 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL--------------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG 127 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS--------------STTEEESCTTSCSCCTTCEEEEEEESCCCS
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC--------------CceEEEeccccCCCCCCCEeEEEEehhccc
Confidence 356899999999999998773 48999999985 578999999999988899999999999973
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh-hcchhhhh-ccCceEEEeeeCCCCCCCCCCccEEEEEEecC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-LGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKEN 224 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~-~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~ 224 (659)
.+ ...+++++.++|+|||++++.++..... ...+...+ ..+|.+...... .-..+.++++|..
T Consensus 128 -~~-------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-------~~~~~~~~~~k~~ 192 (215)
T 2zfu_A 128 -TN-------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLT-------NSHFFLFDFQKTG 192 (215)
T ss_dssp -SC-------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECC-------STTCEEEEEEECS
T ss_pred -cC-------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecC-------CCeEEEEEEEecC
Confidence 32 4599999999999999999998764321 12233333 336655443221 1234677777765
Q ss_pred Ccc
Q 006149 225 SSV 227 (659)
Q Consensus 225 ~~~ 227 (659)
...
T Consensus 193 ~~~ 195 (215)
T 2zfu_A 193 PPL 195 (215)
T ss_dssp SCS
T ss_pred ccc
Confidence 444
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-11 Score=122.94 Aligned_cols=122 Identities=15% Similarity=0.066 Sum_probs=92.0
Q ss_pred HHHHhhCCCCCC-CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC--C
Q 006149 56 PLISLIGAPTSS-PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--F 130 (659)
Q Consensus 56 ~l~~~l~~~~~~-~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--~ 130 (659)
.+..++.. . ++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.+++.....+ .+++++++|+.+++ +
T Consensus 39 ll~~~~~~---~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~ 115 (259)
T 3lpm_A 39 LLAKFSYL---PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI 115 (259)
T ss_dssp HHHHHCCC---CSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS
T ss_pred HHHHHhcC---CCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh
Confidence 34455543 4 678999999999999999998866699999999999998877765544 36999999999875 5
Q ss_pred CCCcccEEEeccccccc-----CCcc--------cchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 131 MDETFDVILDKGGLDAL-----MEPE--------LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l-----~~~~--------~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++||+|+++..+... .++. ........++..+.++|+|||+++++...
T Consensus 116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 178 (259)
T 3lpm_A 116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP 178 (259)
T ss_dssp CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence 57899999997665433 1110 00122568999999999999999997643
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=130.91 Aligned_cols=104 Identities=17% Similarity=0.151 Sum_probs=86.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.++++....+ .+++++++|+.++++++++||+|++....+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 568999999999999999999887799999999 58888877765544 569999999999988888999999986655
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi 176 (659)
.+.... ....++.++.++|+|||+++.
T Consensus 117 ~l~~~~----~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLLYES----MMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTC----CHHHHHHHHHHHEEEEEEEES
T ss_pred hcccHH----HHHHHHHHHHhhcCCCeEEEE
Confidence 543322 156889999999999999973
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.6e-12 Score=134.72 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=90.1
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhh-------c-C--CCCcEEEEe
Q 006149 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-------R-D--RSDMRWRVM 123 (659)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~-------~-~--~~~i~~~~~ 123 (659)
..+.+.+.. .++.+|||||||+|.++..++.. +...|+|||+++.+++.+++... . . ..+++++++
T Consensus 163 ~~il~~l~l---~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 163 AQMIDEIKM---TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHCC---CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 344455543 68899999999999999999865 66579999999999887765321 1 1 257999999
Q ss_pred ecCCCCCCC--CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 124 DMTSMQFMD--ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 124 D~~~l~~~~--~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
|+.++++++ ..||+|+++.++.. ++ ....|.+++++|||||+|++.+...
T Consensus 240 D~~~lp~~d~~~~aDVVf~Nn~~F~---pd-----l~~aL~Ei~RvLKPGGrIVssE~f~ 291 (438)
T 3uwp_A 240 DFLSEEWRERIANTSVIFVNNFAFG---PE-----VDHQLKERFANMKEGGRIVSSKPFA 291 (438)
T ss_dssp CTTSHHHHHHHHTCSEEEECCTTCC---HH-----HHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred cccCCccccccCCccEEEEcccccC---ch-----HHHHHHHHHHcCCCCcEEEEeeccc
Confidence 999988754 47999999876532 22 5688899999999999999987653
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.7e-12 Score=120.44 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=93.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~ 127 (659)
...+...+..++.. ..++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++.....+ ++++++++|+.+
T Consensus 28 ~~~~~~~~~~~l~~--~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 105 (187)
T 2fhp_A 28 TDKVKESIFNMIGP--YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR 105 (187)
T ss_dssp CHHHHHHHHHHHCS--CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred HHHHHHHHHHHHHh--hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHH
Confidence 34555566666642 13578999999999999999988876799999999999998877665443 469999999987
Q ss_pred CC----CCCCcccEEEecccccccCCcccchHHHHHHHHHH--HhccccCeEEEEEEcCCch
Q 006149 128 MQ----FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEV--KRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 128 l~----~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei--~rvLkpGG~lvi~~~~~~~ 183 (659)
.. +++++||+|++...++. .. ....+..+ .++|+|||++++.......
T Consensus 106 ~~~~~~~~~~~fD~i~~~~~~~~-~~-------~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 159 (187)
T 2fhp_A 106 ALEQFYEEKLQFDLVLLDPPYAK-QE-------IVSQLEKMLERQLLTNEAVIVCETDKTVK 159 (187)
T ss_dssp HHHHHHHTTCCEEEEEECCCGGG-CC-------HHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred HHHHHHhcCCCCCEEEECCCCCc-hh-------HHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence 42 23678999998877442 22 23666666 8999999999988766433
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.29 E-value=6e-12 Score=123.75 Aligned_cols=119 Identities=10% Similarity=0.079 Sum_probs=90.4
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC-CC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS-MQ 129 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~-l~ 129 (659)
.+...+..++... .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++....+ .+++++++|+.+ ++
T Consensus 40 ~~~~~l~~~l~~~--~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~ 117 (202)
T 2fpo_A 40 RVRETLFNWLAPV--IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA 117 (202)
T ss_dssp HHHHHHHHHHHHH--HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS
T ss_pred HHHHHHHHHHHhh--cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh
Confidence 3444455554320 1468999999999999999888876799999999999999887765544 589999999987 45
Q ss_pred CCCCcccEEEecccccccCCcccchHHHHHHHHHHHh--ccccCeEEEEEEcC
Q 006149 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTLA 180 (659)
Q Consensus 130 ~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~r--vLkpGG~lvi~~~~ 180 (659)
..+++||+|++...++ ... ...+++.+.+ +|+|||++++....
T Consensus 118 ~~~~~fD~V~~~~p~~-~~~-------~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 118 QKGTPHNIVFVDPPFR-RGL-------LEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp SCCCCEEEEEECCSSS-TTT-------HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred hcCCCCCEEEECCCCC-CCc-------HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 5667999999876643 211 3467777765 69999999988765
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=125.27 Aligned_cols=102 Identities=14% Similarity=-0.007 Sum_probs=84.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCC---CCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFM---DETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~---~~sFDvVi~~ 141 (659)
.++.+|||+|||+|..+..|+.. +..+|+++|+|+.+++.+++.....+ .+++++++|+.+++.. +++||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 45789999999999999999876 44699999999999998877765444 4699999999987643 4799999986
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+. + ...+++.+.++|||||++++...
T Consensus 159 a~~----~-------~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 159 AVA----P-------LCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp SSC----C-------HHHHHHHHGGGEEEEEEEEEEEC
T ss_pred CcC----C-------HHHHHHHHHHHcCCCeEEEEEeC
Confidence 432 2 45899999999999999998774
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=115.82 Aligned_cols=107 Identities=16% Similarity=0.165 Sum_probs=85.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (659)
.++.+|||+|||+|.++..+++. +. .+++++|+++ +++ .+++.++++|+.+.+ +++++||
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~---------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP---------IVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC---------CTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc---------cCcEEEEEcccccchhhhhhhccCCCCcee
Confidence 46789999999999999999887 43 6999999999 653 167999999999876 7778999
Q ss_pred EEEecccccccCCcccchH----HHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 137 VILDKGGLDALMEPELGHK----LGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~----~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
+|++...+++......... ....+++++.++|+|||.+++.++..+.
T Consensus 91 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 141 (180)
T 1ej0_A 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred EEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence 9999988887654321100 1268999999999999999998876443
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-11 Score=118.57 Aligned_cols=106 Identities=14% Similarity=0.201 Sum_probs=81.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------------
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-G--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------- 129 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------------- 129 (659)
.++.+|||+|||+|.++..+++. + ..+|+|+|+|+. ...+++.++++|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----------~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~ 90 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----------DPIPNVYFIQGEIGKDNMNNIKNINYIDNMN 90 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----------CCCTTCEEEECCTTTTSSCCC----------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----------CCCCCceEEEccccchhhhhhcccccccccc
Confidence 46789999999999999999886 3 358999999982 12357999999999876
Q ss_pred -----------CCCCcccEEEecccccccCCcccch----HHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 130 -----------FMDETFDVILDKGGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 130 -----------~~~~sFDvVi~~g~l~~l~~~~~~~----~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+++++||+|++.+++++......+. .....++.++.++|||||.+++..+..+
T Consensus 91 ~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 158 (201)
T 2plw_A 91 NNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS 158 (201)
T ss_dssp -CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred chhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC
Confidence 5678999999988777642211000 1134589999999999999999776543
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-12 Score=143.44 Aligned_cols=116 Identities=17% Similarity=0.191 Sum_probs=88.7
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMD 132 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~ 132 (659)
+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.. ......+...+...+++++
T Consensus 95 ~~~~l~~~~~~---~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 95 LARDFLATELT---GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGI-RVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHHHTTTC---SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTC-CEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCC-CcceeeechhhHhhcccCC
Confidence 33344444432 5678999999999999999999887 99999999999987754410 0011123345555666778
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++||+|++.++++|+.++ ..++++++++|||||++++.+..
T Consensus 170 ~~fD~I~~~~vl~h~~d~-------~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 170 GPANVIYAANTLCHIPYV-------QSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp CCEEEEEEESCGGGCTTH-------HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCEEEEEECChHHhcCCH-------HHHHHHHHHHcCCCeEEEEEeCC
Confidence 999999999999999754 49999999999999999998754
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-12 Score=120.04 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=89.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-C-
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-Q- 129 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l-~- 129 (659)
.+...+..++... ..++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++....+.+++++++|+.+. +
T Consensus 26 ~~~~~~~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 103 (171)
T 1ws6_A 26 RLRKALFDYLRLR-YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPE 103 (171)
T ss_dssp HHHHHHHHHHHHH-CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHhh-ccCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHh
Confidence 4444455554310 01568999999999999999999887 599999999999988776654444899999999874 2
Q ss_pred CC--CCcccEEEecccccccCCcccchHHHHHHHHHHH--hccccCeEEEEEEcCCch
Q 006149 130 FM--DETFDVILDKGGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 130 ~~--~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~--rvLkpGG~lvi~~~~~~~ 183 (659)
++ .++||+|++...++ ...+ .+++.+. ++|+|||++++.+.....
T Consensus 104 ~~~~~~~~D~i~~~~~~~--~~~~-------~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 104 AKAQGERFTVAFMAPPYA--MDLA-------ALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp HHHTTCCEEEEEECCCTT--SCTT-------HHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred hhccCCceEEEEECCCCc--hhHH-------HHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 21 24899999987765 2222 5566666 999999999998876443
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-11 Score=124.58 Aligned_cols=116 Identities=21% Similarity=0.313 Sum_probs=87.4
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d 590 (659)
.+.||++|.+ ++++. ++.+.+||+||+|+|.+++.+.++.|..++++|||||.|+++|+++|... ++
T Consensus 61 e~~Y~e~l~~-~~l~~--------~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~ 131 (283)
T 2i7c_A 61 EFAYHEMMTH-VPMTV--------SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYED 131 (283)
T ss_dssp HHHHHHHHHH-HHHTT--------SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGS
T ss_pred hhhHHHHHHH-HHHhc--------CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCC
Confidence 4679886654 55543 25678999999999999999999888889999999999999999999642 24
Q ss_pred CCeeEE-----------------------------ecccchhHHHHHHHhhccCCCCcEEEecC---c--hHH-HHHHHh
Q 006149 591 KSLKVF-----------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS---F--PEA-AVQLGK 635 (659)
Q Consensus 591 ~rl~vf-----------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~---~--~~~-~~~l~~ 635 (659)
+|+++. .++++.+|++.++++| +++|+++.|. + ... ...++.
T Consensus 132 ~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L---~pgG~lv~~~~~~~~~~~~~~~~~~~ 208 (283)
T 2i7c_A 132 KRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNAL---KPNGYCVAQCESLWIHVGTIKNMIGY 208 (283)
T ss_dssp TTEEEEESCHHHHHHHCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHE---EEEEEEEEECCCTTTCHHHHHHHHHH
T ss_pred CcEEEEECChHHHHHhCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhc---CCCcEEEEECCCcccCHHHHHHHHHH
Confidence 555222 2356789999999999 9999999884 2 122 234445
Q ss_pred hcc-CCcc
Q 006149 636 LVK-FQHL 642 (659)
Q Consensus 636 ~~~-f~~~ 642 (659)
+.+ |++.
T Consensus 209 l~~~F~~v 216 (283)
T 2i7c_A 209 AKKLFKKV 216 (283)
T ss_dssp HHTTCSEE
T ss_pred HHHHCCce
Confidence 544 7754
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-11 Score=128.30 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=90.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
+..+|||+|||+|.++..+++. +..+++++|++ .+++.++++....+ .+++++++|+.+.+++++ ||+|++..++
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l 242 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFL 242 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchh
Confidence 5689999999999999999887 23499999999 99998877764433 469999999998777644 9999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+++.+++ ..++++++.++|+|||++++.+...
T Consensus 243 ~~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 243 HHFDVAT-----CEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp GGSCHHH-----HHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred ccCCHHH-----HHHHHHHHHHhCCCCcEEEEEeecC
Confidence 9985443 6799999999999999999998753
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=131.40 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=90.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC--CCCCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM--QFMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l--~~~~~sFDvVi~~g 142 (659)
...+|||||||+|.++..+++. +..+++++|+ +.+++.++++....+ ++++++.+|+.+. |++ ++||+|++..
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 4679999999999999999886 2358999999 999998887765544 5799999999986 466 7899999999
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++++.+++ ..++|++++++|+|||++++.+..
T Consensus 257 vlh~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 257 FLDCFSEEE-----VISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp CSTTSCHHH-----HHHHHHHHHHHCCTTCEEEEEECC
T ss_pred hhhhCCHHH-----HHHHHHHHHHhcCCCcEEEEEeec
Confidence 999886554 568999999999999999998864
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.7e-11 Score=126.42 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=111.8
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (659)
.+...+..++.. .++.+|||+|||+|.++..++..+ ..+|+|+|+++.+++.+++.....+ .++++.++|+.++
T Consensus 190 ~la~~l~~~~~~---~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~ 266 (354)
T 3tma_A 190 VLAQALLRLADA---RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL 266 (354)
T ss_dssp HHHHHHHHHTTC---CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGG
T ss_pred HHHHHHHHHhCC---CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhC
Confidence 344555566554 567899999999999999998864 3589999999999999887765544 3799999999999
Q ss_pred CCCCCcccEEEecccccccCCcc-cchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeCCCC
Q 006149 129 QFMDETFDVILDKGGLDALMEPE-LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKS 207 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~-~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~ 207 (659)
+.+.+.||+|+++..+....... ........+++++.++|+|||++++++.....+ +.+.. .+|...-.... .
T Consensus 267 ~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~-~~~~~---~g~~~~~~~~l--~ 340 (354)
T 3tma_A 267 PRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALL-KRALP---PGFALRHARVV--E 340 (354)
T ss_dssp GGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHH-HHHCC---TTEEEEEEEEC--C
T ss_pred ccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHH-HHHhh---cCcEEEEEEEE--E
Confidence 87778899999977655432211 112235789999999999999999998753222 22222 35544332221 1
Q ss_pred CCCCCCccEEEEEEe
Q 006149 208 SSEPSLQTFMVVADK 222 (659)
Q Consensus 208 ~~~~~l~~f~~v~~k 222 (659)
...+..++++++|
T Consensus 341 --~g~l~~~i~vl~r 353 (354)
T 3tma_A 341 --QGGVYPRVFVLEK 353 (354)
T ss_dssp --BTTBCCEEEEEEE
T ss_pred --eCCEEEEEEEEEc
Confidence 2246667777765
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=130.69 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=94.5
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSM 128 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~----~~i~~~~~D~~~l 128 (659)
...+.+.+.. .++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++....+ .++.++++|+.+
T Consensus 211 ~~~ll~~l~~---~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~- 286 (375)
T 4dcm_A 211 ARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS- 286 (375)
T ss_dssp HHHHHHTCCC---SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-
T ss_pred HHHHHHhCcc---cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-
Confidence 3456666654 456899999999999999999884 4699999999999999887765443 258889999988
Q ss_pred CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
++++++||+|+++..+++..... ......+++++.++|+|||+++++......
T Consensus 287 ~~~~~~fD~Ii~nppfh~~~~~~--~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~ 339 (375)
T 4dcm_A 287 GVEPFRFNAVLCNPPFHQQHALT--DNVAWEMFHHARRCLKINGELYIVANRHLD 339 (375)
T ss_dssp TCCTTCEEEEEECCCC---------CCHHHHHHHHHHHHEEEEEEEEEEEETTSC
T ss_pred cCCCCCeeEEEECCCcccCcccC--HHHHHHHHHHHHHhCCCCcEEEEEEECCcC
Confidence 56778999999998887532211 112557899999999999999998765433
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-11 Score=121.16 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=88.7
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~ 127 (659)
...+...+...+......++.+|||+|||+|..+..+++. + .+.|+|+|+|+.+++.+.+.+. ...++.++++|+..
T Consensus 58 ~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~-~r~nv~~i~~Da~~ 136 (232)
T 3id6_C 58 RSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQ-RRPNIFPLLADARF 136 (232)
T ss_dssp TCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHH-HCTTEEEEECCTTC
T ss_pred HHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCeEEEEccccc
Confidence 3345556666665444578999999999999999999886 3 4699999999999876655543 34789999999987
Q ss_pred CC---CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 128 MQ---FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 128 l~---~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.. ...++||+|++..+. ++ ....+...+.++|||||+|++...
T Consensus 137 ~~~~~~~~~~~D~I~~d~a~-----~~----~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 137 PQSYKSVVENVDVLYVDIAQ-----PD----QTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp GGGTTTTCCCEEEEEECCCC-----TT----HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred chhhhccccceEEEEecCCC-----hh----HHHHHHHHHHHhCCCCeEEEEEEc
Confidence 43 124689999987543 11 123445667779999999998753
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.4e-11 Score=119.07 Aligned_cols=123 Identities=18% Similarity=0.262 Sum_probs=90.9
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~ 123 (659)
|......+...+...+......++.+|||+|||+|.++..+++. | ..+|+++|+|+.+++.+.+..... ++++++++
T Consensus 51 ~~p~~~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~ 129 (227)
T 1g8a_A 51 WNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILG 129 (227)
T ss_dssp CCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEEC
T ss_pred eCCCchhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEc
Confidence 44444455455544454333457889999999999999999976 4 369999999999999887766443 78999999
Q ss_pred ecCCCC---CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 124 DMTSMQ---FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 124 D~~~l~---~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
|+.+.. ...++||+|++... .+. ....++.++.++|||||++++..
T Consensus 130 d~~~~~~~~~~~~~~D~v~~~~~-----~~~----~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 130 DATKPEEYRALVPKVDVIFEDVA-----QPT----QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CTTCGGGGTTTCCCEEEEEECCC-----STT----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCcchhhcccCCceEEEECCC-----CHh----HHHHHHHHHHHhcCCCCEEEEEE
Confidence 998742 12368999996543 111 13355999999999999999874
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=129.23 Aligned_cols=99 Identities=12% Similarity=0.169 Sum_probs=79.1
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC-----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-----TQ 589 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl-----~~ 589 (659)
.+.||++|++ ++++. ++.+.+||+||+|+|.+++.+.++.|..++++|||||.|+++|+++|.. -+
T Consensus 60 e~~Y~e~l~~-~~l~~--------~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~ 130 (314)
T 1uir_A 60 EYIYHETLVH-PAMLT--------HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFD 130 (314)
T ss_dssp HHHHHHHHHH-HHHHH--------SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGG
T ss_pred hhHHHHHHHH-HHHhc--------CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccccc
Confidence 4689999886 34433 2567899999999999999999988888999999999999999999852 12
Q ss_pred CCCeeEE-----------------------e---------cccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 590 DKSLKVF-----------------------N---------HLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 590 d~rl~vf-----------------------~---------~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
++|+++. . +|++.+|++.++++| +|+|+++.|.
T Consensus 131 ~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~L---kpgG~lv~~~ 195 (314)
T 1uir_A 131 DPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHL---NPGGVMGMQT 195 (314)
T ss_dssp CTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTE---EEEEEEEEEE
T ss_pred CCceEEEEchHHHHHHhcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhc---CCCcEEEEEc
Confidence 4555222 1 134689999999999 9999999885
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=121.66 Aligned_cols=104 Identities=10% Similarity=0.112 Sum_probs=80.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCCCCCCCcccEEEe
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQFMDETFDVILD 140 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l~~~~~sFDvVi~ 140 (659)
.++.+|||+|||+|.++..|++.. ..+|+|+|+|+.+++.+.+.+.. ..+++.++++|+.++++++++ |.|+.
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 467899999999999999999883 35999999999988865433322 225899999999999987777 77763
Q ss_pred cc---cc--cccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 141 KG---GL--DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 141 ~g---~l--~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.. .+ +++.++. .+++++.++|||||++++..
T Consensus 105 ~~~~~~~~~~~~~~~~-------~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSP-------EMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp ESCCHHHHHHHHTSSS-------HHHHHHHHTEEEEEEEEEEE
T ss_pred EccchhhhhhhhccHH-------HHHHHHHHHcCCCcEEEEEe
Confidence 22 22 1444433 89999999999999999854
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-11 Score=127.32 Aligned_cols=107 Identities=15% Similarity=0.045 Sum_probs=90.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.+..+|||+|||+|..+..+++. +..+++++|+ +.+++.++++....+ +++++..+|+. .+++. +||+|++..+
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 34689999999999999999886 3358999999 999998887765543 67999999998 45554 8999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++++.+++ ..+++++++++|+|||++++.+...
T Consensus 245 lh~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 245 LHDWDDLS-----AVAILRRCAEAAGSGGVVLVIEAVA 277 (332)
T ss_dssp GGGSCHHH-----HHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred hccCCHHH-----HHHHHHHHHHhcCCCCEEEEEeecC
Confidence 99987654 5699999999999999999998653
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-12 Score=144.05 Aligned_cols=107 Identities=19% Similarity=0.219 Sum_probs=88.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC--CCCCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM--QFMDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l--~~~~~sFDvVi~~g~l 144 (659)
.+.+|||||||.|.++..|++.|. +|||||.|+.+|+.|+..+...+ .++.|.++++.++ ++++++||+|+|..++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 357999999999999999999997 99999999999999988776655 5799999999987 5667899999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+|+.++.. -..+..+.+.|+++|..++....
T Consensus 145 ehv~~~~~-----~~~~~~~~~tl~~~~~~~~~~~~ 175 (569)
T 4azs_A 145 HHIVHLHG-----IDEVKRLLSRLADVTQAVILELA 175 (569)
T ss_dssp HHHHHHHC-----HHHHHHHHHHHHHHSSEEEEECC
T ss_pred hcCCCHHH-----HHHHHHHHHHhccccceeeEEec
Confidence 99976541 23344577788888877666543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-11 Score=123.74 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=94.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcC----CCCcEEEEee
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMD 124 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~----~~~i~~~~~D 124 (659)
+.....+...+.. .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++..... ..++.++++|
T Consensus 85 ~~~~~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d 161 (280)
T 1i9g_A 85 PKDAAQIVHEGDI---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD 161 (280)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred HHHHHHHHHHcCC---CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence 3344455555554 57889999999999999999985 3 469999999999999888776543 3689999999
Q ss_pred cCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 125 MTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 125 ~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
+.+.++++++||+|++. +.++. .++.++.++|+|||++++.+.....
T Consensus 162 ~~~~~~~~~~~D~v~~~-----~~~~~-------~~l~~~~~~L~pgG~l~~~~~~~~~ 208 (280)
T 1i9g_A 162 LADSELPDGSVDRAVLD-----MLAPW-------EVLDAVSRLLVAGGVLMVYVATVTQ 208 (280)
T ss_dssp GGGCCCCTTCEEEEEEE-----SSCGG-------GGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred hHhcCCCCCceeEEEEC-----CcCHH-------HHHHHHHHhCCCCCEEEEEeCCHHH
Confidence 99988878899999973 23333 7899999999999999999876433
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-11 Score=121.44 Aligned_cols=115 Identities=15% Similarity=0.130 Sum_probs=89.2
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (659)
.....+..++.. .++.+|||+|||+|..+..++... ..+|+++|+++.+++.++++....+ ++++++++|+.+.
T Consensus 58 ~~~~~l~~~~~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (232)
T 3ntv_A 58 LTLDLIKQLIRM---NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ 134 (232)
T ss_dssp HHHHHHHHHHHH---HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred HHHHHHHHHHhh---cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence 344445555443 357899999999999999999852 4699999999999999988776554 4799999999875
Q ss_pred -C-CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 129 -Q-FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 129 -~-~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+ ..+++||+|++...... ...+++++.++|+|||++++...
T Consensus 135 ~~~~~~~~fD~V~~~~~~~~----------~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 135 FENVNDKVYDMIFIDAAKAQ----------SKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp HHHHTTSCEEEEEEETTSSS----------HHHHHHHHGGGEEEEEEEEEECT
T ss_pred HHhhccCCccEEEEcCcHHH----------HHHHHHHHHHhcCCCeEEEEeeC
Confidence 3 33689999996543221 45899999999999999988543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=130.61 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=96.3
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (659)
....+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.++++....+..+.++++|+.+.+
T Consensus 184 ~~~~ll~~l~~---~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~-- 258 (343)
T 2pjd_A 184 GSQLLLSTLTP---HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV-- 258 (343)
T ss_dssp HHHHHHHHSCT---TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--
T ss_pred HHHHHHHhcCc---CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--
Confidence 34556666643 3567999999999999999998864 48999999999999998887666666788999987754
Q ss_pred CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++||+|+++..+++.... .......+++++.++|||||.++++...
T Consensus 259 ~~~fD~Iv~~~~~~~g~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 259 KGRFDMIISNPPFHDGMQT--SLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CSCEEEEEECCCCCSSSHH--HHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred cCCeeEEEECCCcccCccC--CHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 6799999999888753210 1123679999999999999999998765
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=123.75 Aligned_cols=102 Identities=17% Similarity=0.236 Sum_probs=85.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcC-C-CCcEEEEeecCCCCCCCCcccEEEecc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD-R-SDMRWRVMDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~-~-~~i~~~~~D~~~l~~~~~sFDvVi~~g 142 (659)
.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++..... + +++.++++|+.+ ++++++||+|++
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~-- 185 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIA-- 185 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEE--
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEE--
Confidence 57789999999999999999986 2359999999999999988776554 3 679999999988 666789999997
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++.++. .+++++.++|+|||++++.+...
T Consensus 186 ---~~~~~~-------~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 186 ---DIPDPW-------NHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp ---CCSCGG-------GSHHHHHHTEEEEEEEEEEESSH
T ss_pred ---cCcCHH-------HHHHHHHHHcCCCCEEEEEeCCH
Confidence 233333 78999999999999999998764
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.22 E-value=8.9e-11 Score=123.61 Aligned_cols=99 Identities=15% Similarity=0.236 Sum_probs=74.8
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d 590 (659)
.+.||++|++ ++++. ++.+.+||+||+|.|.+++.+.++.|..+|++|||||.|+++|+++|... .+
T Consensus 91 e~~Y~e~l~~-l~l~~--------~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~ 161 (314)
T 2b2c_A 91 EFSYQEMLAH-LPMFA--------HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSH 161 (314)
T ss_dssp SSHHHHHHHH-HHHHH--------SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGC
T ss_pred hhHHHHHHHH-HHHhh--------CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCC
Confidence 4679986654 55433 25678999999999999999999888889999999999999999999532 24
Q ss_pred CCeeEE-----------------------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 591 KSLKVF-----------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 591 ~rl~vf-----------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+|+++. .++++.+|++.++++| +|+|+++.|.
T Consensus 162 ~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~L---kpgG~lv~~~ 222 (314)
T 2b2c_A 162 PKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDAL---KEDGILSSQG 222 (314)
T ss_dssp TTEEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHE---EEEEEEEEEC
T ss_pred CCEEEEEChHHHHHHhcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhc---CCCeEEEEEC
Confidence 555222 1356689999999999 9999999865
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=9.5e-11 Score=114.44 Aligned_cols=106 Identities=13% Similarity=0.234 Sum_probs=79.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC-------C----Ccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM-------D----ETF 135 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~-------~----~sF 135 (659)
.++.+|||+|||+|.++..+++.+ ..|+|+|+++. ...++++++++|+.+.+.. . ++|
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~----------~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 92 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEM----------EEIAGVRFIRCDIFKETIFDDIDRALREEGIEKV 92 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCC----------CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSE
T ss_pred CCCCEEEEEeecCCHHHHHHHHcC-CcEEEEecccc----------ccCCCeEEEEccccCHHHHHHHHHHhhcccCCcc
Confidence 468899999999999999999884 59999999982 1236899999999986521 1 489
Q ss_pred cEEEecccccccCCccc----chHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 136 DVILDKGGLDALMEPEL----GHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~----~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
|+|++.+.......... .......++..+.++|||||.|++..+..+.
T Consensus 93 D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~ 144 (191)
T 3dou_A 93 DDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM 144 (191)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred eEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence 99999765443221110 0122568899999999999999998876444
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-11 Score=122.02 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=86.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++..+++.|. +|+++|+++.+++.++++....+..+++.++|+.+. +++++||+|+++...+.
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAEL 196 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHHH
Confidence 3678999999999999999999887 999999999999988877655543489999998773 45678999998755443
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
...++.++.++|+|||++++.....
T Consensus 197 ----------~~~~l~~~~~~LkpgG~lils~~~~ 221 (254)
T 2nxc_A 197 ----------HAALAPRYREALVPGGRALLTGILK 221 (254)
T ss_dssp ----------HHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred ----------HHHHHHHHHHHcCCCCEEEEEeecc
Confidence 4589999999999999999987653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.4e-11 Score=125.72 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=90.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++....+ .+++++.+|+.+.++++ +|+|++..+
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~v~~~~v 265 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRI 265 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC--CSEEEEESC
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC--CCEEEEech
Confidence 467899999999999999998873 358999999 999998887765543 45999999999887664 399999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++++.+.. ..+++++++++|+|||++++.+...
T Consensus 266 lh~~~d~~-----~~~~l~~~~~~L~pgG~l~i~e~~~ 298 (359)
T 1x19_A 266 LYSANEQL-----STIMCKKAFDAMRSGGRLLILDMVI 298 (359)
T ss_dssp GGGSCHHH-----HHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred hccCCHHH-----HHHHHHHHHHhcCCCCEEEEEeccc
Confidence 99886533 5699999999999999999988653
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.6e-12 Score=122.82 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=75.5
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (659)
+...+.+.+.. ..++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++....+.+++++++|+.+ +++
T Consensus 17 ~~~~~~~~l~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~ 93 (215)
T 4dzr_A 17 LVEEAIRFLKR--MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLI 93 (215)
T ss_dssp HHHHHHHHHTT--CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHH
T ss_pred HHHHHHHHhhh--cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhh
Confidence 33445555532 1367899999999999999999884 2489999999999998876654444478899999988 555
Q ss_pred C-----CcccEEEecccccccCCcc-------------------cchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 132 D-----ETFDVILDKGGLDALMEPE-------------------LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 132 ~-----~sFDvVi~~g~l~~l~~~~-------------------~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+ ++||+|+++..++...... .+......+++++.++|||||+++++...
T Consensus 94 ~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 94 ERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred hhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 5 8999999975554322110 01111278999999999999996665544
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-10 Score=118.03 Aligned_cols=161 Identities=14% Similarity=0.151 Sum_probs=104.6
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhc---CC--CCcEEEEeecCCC--
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR---DR--SDMRWRVMDMTSM-- 128 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~---~~--~~i~~~~~D~~~l-- 128 (659)
+..++.. .++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++.... .+ .+++++++|+.+.
T Consensus 28 L~~~~~~---~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~ 104 (260)
T 2ozv_A 28 LASLVAD---DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAK 104 (260)
T ss_dssp HHHTCCC---CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHH
T ss_pred HHHHhcc---cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhh
Confidence 4455543 467899999999999999999884 35899999999999988776654 33 2599999999987
Q ss_pred -----CCCCCcccEEEecccccccCC---cc--------cchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh
Q 006149 129 -----QFMDETFDVILDKGGLDALME---PE--------LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 192 (659)
Q Consensus 129 -----~~~~~sFDvVi~~g~l~~l~~---~~--------~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~ 192 (659)
++++++||+|+++..+..... ++ ........+++.+.++|+|||+++++.... ....+...+
T Consensus 105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~l 182 (260)
T 2ozv_A 105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ--SVAEIIAAC 182 (260)
T ss_dssp HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG--GHHHHHHHH
T ss_pred hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH--HHHHHHHHH
Confidence 256789999999854443210 00 000015689999999999999999876542 223344444
Q ss_pred ccCce-EEEeeeCCCCCCCCCCccEEEEEEecC
Q 006149 193 RFGWK-MSVHAIPQKSSSEPSLQTFMVVADKEN 224 (659)
Q Consensus 193 ~~~w~-~~~~~i~~~~~~~~~l~~f~~v~~k~~ 224 (659)
...|. .++..+.... ......+.+.+.|..
T Consensus 183 ~~~~~~~~i~~v~~~~--~~~~~~~lv~~~k~~ 213 (260)
T 2ozv_A 183 GSRFGGLEITLIHPRP--GEDAVRMLVTAIKGS 213 (260)
T ss_dssp TTTEEEEEEEEEESST--TSCCCEEEEEEEETC
T ss_pred HhcCCceEEEEEcCCC--CCCceEEEEEEEeCC
Confidence 33332 3333332221 222334666666643
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.1e-11 Score=122.37 Aligned_cols=98 Identities=19% Similarity=0.250 Sum_probs=77.5
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc----CCC--
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFT-- 588 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F----gl~-- 588 (659)
.+.||++|++ ++++. .+.+.+||.||+|+|.++..+.++ |..++++|||||.|+++|+++| ++.
T Consensus 58 ~~~y~e~l~~-~~l~~--------~~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~ 127 (281)
T 1mjf_A 58 ERSYHEPLVH-PAMLA--------HPKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEA 127 (281)
T ss_dssp THHHHHHHHH-HHHHH--------SSCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHH
T ss_pred chHHHHHHHH-HHHhh--------CCCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccc
Confidence 4679998875 33332 256789999999999999999998 8889999999999999999999 431
Q ss_pred ----CCCCeeEE----------------------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 589 ----QDKSLKVF----------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 589 ----~d~rl~vf----------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.++|+++. .++++.+|++.++++| +|+|+++.|.
T Consensus 128 ~~~~~~~~v~~~~~D~~~~l~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L---~pgG~lv~~~ 193 (281)
T 1mjf_A 128 MLNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDAL---NNPGIYVTQA 193 (281)
T ss_dssp HHTTCCSSEEEEESCHHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHE---EEEEEEEEEE
T ss_pred cccCCCCcEEEEECchHHHhcccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhc---CCCcEEEEEc
Confidence 34455221 2345789999999999 9999999874
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-10 Score=125.78 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=90.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++....+ ++++++.+|+. .+++. .||+|++..+
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 277 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHV 277 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESC
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhh
Confidence 457899999999999999998872 358999999 999998887765543 67999999998 46665 8999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++.++. ..+++++++++|+|||++++.+..
T Consensus 278 lh~~~d~~-----~~~~L~~~~~~L~pgG~l~i~e~~ 309 (369)
T 3gwz_A 278 LHDWDDDD-----VVRILRRIATAMKPDSRLLVIDNL 309 (369)
T ss_dssp GGGSCHHH-----HHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred hccCCHHH-----HHHHHHHHHHHcCCCCEEEEEEec
Confidence 99886544 568999999999999999998865
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.21 E-value=5.7e-11 Score=116.21 Aligned_cols=101 Identities=13% Similarity=0.050 Sum_probs=83.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.+++.....+ .+++++++|+.+.+ +.++||+|++.+.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence 3679999999999999999886 34599999999999998877765544 45999999999876 4578999997542
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.+ ...++.++.++|+|||++++....
T Consensus 142 --~~-------~~~~l~~~~~~L~~gG~l~~~~~~ 167 (207)
T 1jsx_A 142 --AS-------LNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp --SS-------HHHHHHHHTTSEEEEEEEEEEESS
T ss_pred --CC-------HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 11 458999999999999999998643
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=132.23 Aligned_cols=97 Identities=18% Similarity=0.221 Sum_probs=78.4
Q ss_pred CCCeEEEECCC------cchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC------CC
Q 006149 68 PPPQILVPGCG------NSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM------DE 133 (659)
Q Consensus 68 ~~~~ILDiGCG------~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~------~~ 133 (659)
++.+||||||| +|..+..++.. +..+|+|+|+|+.+. ...++++|+++|+.++++. ++
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VDELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hcCCCcEEEEecccccchhhhhhcccC
Confidence 46899999999 77777777654 346999999999752 2347899999999998877 78
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+||+|++.++ ++..+ ..++|++++++|||||+|++.++.
T Consensus 288 sFDlVisdgs-H~~~d-------~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 288 PFDIVIDDGS-HINAH-------VRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CEEEEEECSC-CCHHH-------HHHHHHHHGGGEEEEEEEEEECGG
T ss_pred CccEEEECCc-ccchh-------HHHHHHHHHHhcCCCeEEEEEecc
Confidence 9999999764 33221 568999999999999999999875
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.7e-11 Score=120.32 Aligned_cols=114 Identities=19% Similarity=0.268 Sum_probs=91.3
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-C-CcEEEEeecCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-S-DMRWRVMDMTS 127 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~-~-~i~~~~~D~~~ 127 (659)
.....+...+.. .++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.+++.....+ + +++++++|+.+
T Consensus 80 ~~~~~i~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 156 (255)
T 3mb5_A 80 KDAALIVAYAGI---SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE 156 (255)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred hHHHHHHHhhCC---CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence 344456666654 57889999999999999999987 4 4699999999999998887765433 3 49999999987
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
. +++++||+|++. ..++. .+++++.++|+|||++++.....
T Consensus 157 ~-~~~~~~D~v~~~-----~~~~~-------~~l~~~~~~L~~gG~l~~~~~~~ 197 (255)
T 3mb5_A 157 G-IEEENVDHVILD-----LPQPE-------RVVEHAAKALKPGGFFVAYTPCS 197 (255)
T ss_dssp C-CCCCSEEEEEEC-----SSCGG-------GGHHHHHHHEEEEEEEEEEESSH
T ss_pred c-cCCCCcCEEEEC-----CCCHH-------HHHHHHHHHcCCCCEEEEEECCH
Confidence 4 677889999973 23332 78999999999999999988653
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.7e-11 Score=118.07 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=89.7
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CC-CeEEEEcCCHHHHHHHHHHhhcC------CCCcEEEEee
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD------RSDMRWRVMD 124 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~-~~VtgvD~S~~~i~~~~~~~~~~------~~~i~~~~~D 124 (659)
....+...+.. ...++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.++++.... ..++.++++|
T Consensus 63 ~~~~~l~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 141 (226)
T 1i1n_A 63 MHAYALELLFD-QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD 141 (226)
T ss_dssp HHHHHHHHTTT-TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred HHHHHHHHHHh-hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECC
Confidence 34445555541 1256789999999999999999886 43 59999999999999887766442 3579999999
Q ss_pred cCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 125 MTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 125 ~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+...+..+++||+|++...+.++ +.++.++|||||++++....
T Consensus 142 ~~~~~~~~~~fD~i~~~~~~~~~-------------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 142 GRMGYAEEAPYDAIHVGAAAPVV-------------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp GGGCCGGGCCEEEEEECSBBSSC-------------CHHHHHTEEEEEEEEEEESC
T ss_pred cccCcccCCCcCEEEECCchHHH-------------HHHHHHhcCCCcEEEEEEec
Confidence 98766567889999988777654 46789999999999998754
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.6e-11 Score=118.86 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=90.5
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC------CeEEEEcCCHHHHHHHHHHhhcC------CCCcE
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF------HGITNVDFSKVVISDMLRRNVRD------RSDMR 119 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~------~~VtgvD~S~~~i~~~~~~~~~~------~~~i~ 119 (659)
.....+.+.+.. ...++.+|||+|||+|.++..+++... .+|+++|+++.+++.++++.... ..++.
T Consensus 65 ~~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~ 143 (227)
T 2pbf_A 65 HMHALSLKRLIN-VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFK 143 (227)
T ss_dssp HHHHHHHHHHTT-TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEE
T ss_pred HHHHHHHHHHHh-hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEE
Confidence 344455565531 124678999999999999999988742 48999999999999988776543 35799
Q ss_pred EEEeecCCCC----CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 120 WRVMDMTSMQ----FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 120 ~~~~D~~~l~----~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++|+.+.. ...++||+|++...++++ +.++.++|+|||++++....
T Consensus 144 ~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~-------------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 144 IIHKNIYQVNEEEKKELGLFDAIHVGASASEL-------------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp EEECCGGGCCHHHHHHHCCEEEEEECSBBSSC-------------CHHHHHHEEEEEEEEEEEEE
T ss_pred EEECChHhcccccCccCCCcCEEEECCchHHH-------------HHHHHHhcCCCcEEEEEEcc
Confidence 9999998865 556889999998887754 46788999999999988753
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-11 Score=126.05 Aligned_cols=113 Identities=18% Similarity=0.144 Sum_probs=92.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC--CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~--~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (659)
+.....+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.++++....+ .++.++++|+.+
T Consensus 61 ~~~~~~l~~~l~~---~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~ 137 (317)
T 1dl5_A 61 PSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY 137 (317)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred HHHHHHHHHhcCC---CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhh
Confidence 3455566666654 5788999999999999999998743 469999999999999887765544 569999999998
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+.++++||+|++.++++++. +.+.++|||||++++...
T Consensus 138 ~~~~~~~fD~Iv~~~~~~~~~-------------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 138 GVPEFSPYDVIFVTVGVDEVP-------------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CCGGGCCEEEEEECSBBSCCC-------------HHHHHHEEEEEEEEEEBC
T ss_pred ccccCCCeEEEEEcCCHHHHH-------------HHHHHhcCCCcEEEEEEC
Confidence 655568999999999998763 467889999999999864
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.9e-11 Score=115.81 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=76.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++++.. +++++++|+.+++ ++||+|++...+++
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 122 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEIS---GKYDTWIMNPPFGS 122 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGCC---CCEEEEEECCCC--
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC----CCEEEECcHHHCC---CCeeEEEECCCchh
Confidence 3678999999999999999998877689999999999998866653 7999999999864 68999999999888
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
..... ...+++++.++| |+.+++..
T Consensus 123 ~~~~~-----~~~~l~~~~~~~--g~~~~~~~ 147 (200)
T 1ne2_A 123 VVKHS-----DRAFIDKAFETS--MWIYSIGN 147 (200)
T ss_dssp ----------CHHHHHHHHHHE--EEEEEEEE
T ss_pred ccCch-----hHHHHHHHHHhc--CcEEEEEc
Confidence 75432 247889999988 55555444
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-10 Score=112.27 Aligned_cols=121 Identities=11% Similarity=0.090 Sum_probs=89.7
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecC
Q 006149 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (659)
Q Consensus 47 y~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~ 126 (659)
|.....+...+...+......++.+|||+|||+|.++..++..+..+|+|+|+++.+++.++++....+.+++++++|+.
T Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~ 107 (207)
T 1wy7_A 28 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVS 107 (207)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGG
T ss_pred ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchH
Confidence 33444444444444432112467899999999999999999987768999999999999887776544447999999999
Q ss_pred CCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 127 ~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
+++ ++||+|++...++...... ...+++++.++| ||.+++.
T Consensus 108 ~~~---~~~D~v~~~~p~~~~~~~~-----~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 108 EFN---SRVDIVIMNPPFGSQRKHA-----DRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp GCC---CCCSEEEECCCCSSSSTTT-----THHHHHHHHHHC--SEEEEEE
T ss_pred HcC---CCCCEEEEcCCCccccCCc-----hHHHHHHHHHhc--CcEEEEE
Confidence 864 4899999988877654322 347888999988 6655444
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.4e-11 Score=133.03 Aligned_cols=103 Identities=18% Similarity=0.145 Sum_probs=86.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.+++.....+ .+++++++|+.+++++ ++||+|++...+
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG 234 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCH
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCch
Confidence 45789999999999999999988777999999998 8888877665544 5799999999998765 689999998887
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEE
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi 176 (659)
+++.... ....+.++.++|||||++++
T Consensus 235 ~~~~~e~-----~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 235 YMLFNER-----MLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHTCHH-----HHHHHHHGGGGEEEEEEEES
T ss_pred HhcCcHH-----HHHHHHHHHHhcCCCCEEEE
Confidence 7765443 45677889999999999984
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-11 Score=124.23 Aligned_cols=122 Identities=17% Similarity=0.127 Sum_probs=90.2
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF 130 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~ 130 (659)
+...+.+.+. .++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.++++....+ ++++++++|+.+. +
T Consensus 98 l~~~~l~~~~----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~ 172 (276)
T 2b3t_A 98 LVEQALARLP----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-L 172 (276)
T ss_dssp HHHHHHHHSC----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-G
T ss_pred HHHHHHHhcc----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-c
Confidence 4444445443 25679999999999999999865 44699999999999998877665433 4799999999874 4
Q ss_pred CCCcccEEEecccccccCC------------------cccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 131 MDETFDVILDKGGLDALME------------------PELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~------------------~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
++++||+|+++..+..... ..++......++.++.++|+|||++++...
T Consensus 173 ~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 173 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 4678999999744332111 011113367899999999999999998753
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-11 Score=126.38 Aligned_cols=105 Identities=20% Similarity=0.122 Sum_probs=88.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++....+ .+++++++|+.+ +++. .||+|++..+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 257 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV 257 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEecc
Confidence 467899999999999999998873 358999999 999999887765443 479999999986 4443 4999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
++++.+.. ...+++++.++|+|||++++.+.
T Consensus 258 l~~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 258 LLNWSDED-----ALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp GGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCCHHH-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 99876543 46899999999999999999887
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-11 Score=119.03 Aligned_cols=102 Identities=9% Similarity=0.080 Sum_probs=82.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCC--CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSM--QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~~~D~~~l--~~~~~sFDvVi~ 140 (659)
++.+|||+|||+|..+..|++. + ..+|+++|+++.+++.+++.....+ .+++++++|+.+. .+++++||+|++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 3459999999999999999985 2 4699999999999999988776544 3699999998775 244689999997
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
...... ...+++++.++|||||++++.+.
T Consensus 136 d~~~~~----------~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 136 QVSPMD----------LKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp CCCTTT----------HHHHHHHHHHHEEEEEEEEETTT
T ss_pred cCcHHH----------HHHHHHHHHHHcCCCcEEEEeCC
Confidence 543221 45789999999999999998553
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.4e-11 Score=120.67 Aligned_cols=109 Identities=18% Similarity=0.114 Sum_probs=73.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCC-HHHHHHH---HHHhhcCC-CCcEEEEeecCCCCCC-CCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFS-KVVISDM---LRRNVRDR-SDMRWRVMDMTSMQFM-DETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S-~~~i~~~---~~~~~~~~-~~i~~~~~D~~~l~~~-~~sFDvVi~ 140 (659)
++.+|||||||+|.++..|++. ...+|+|||+| +.|++.+ +++....+ +++.++++|+.++|.. .+.+|.|++
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 6789999999999999999864 33589999999 7776654 44433333 6799999999998531 134444443
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
........ .........++++++|+|||||++++..
T Consensus 104 ~~~~~~~~--~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 104 LFPWGTLL--EYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp ESCCHHHH--HHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred eCCCcHHh--hhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 32211100 0000001368999999999999999854
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.18 E-value=5e-10 Score=122.42 Aligned_cols=116 Identities=12% Similarity=0.047 Sum_probs=87.5
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHH-------HHHhhcCC---CCcEE
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDM-------LRRNVRDR---SDMRW 120 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~-------~~~~~~~~---~~i~~ 120 (659)
.....+.+.+.. .++.+|||+|||+|.++..++.. +...|+|||+++.+++.+ +++....+ .++++
T Consensus 229 ~~v~~ml~~l~l---~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~ 305 (433)
T 1u2z_A 229 NFLSDVYQQCQL---KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 305 (433)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred HHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence 344445555543 57889999999999999999986 666899999999998877 55554443 68999
Q ss_pred EEeecCCC--CC--CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 121 RVMDMTSM--QF--MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 121 ~~~D~~~l--~~--~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+++|.... ++ ..++||+|++..++. .++ ...+|.++.++|||||++++..
T Consensus 306 i~gD~~~~~~~~~~~~~~FDvIvvn~~l~---~~d-----~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 306 SLKKSFVDNNRVAELIPQCDVILVNNFLF---DED-----LNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECCTTC---CHH-----HHHHHHHHHTTCCTTCEEEESS
T ss_pred EEcCccccccccccccCCCCEEEEeCccc---ccc-----HHHHHHHHHHhCCCCeEEEEee
Confidence 98865432 22 247899999876552 122 5588999999999999999985
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.18 E-value=7.9e-11 Score=119.19 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=83.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhc---------CCCCcEEEEeecCC-CC--CCCCc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVR---------DRSDMRWRVMDMTS-MQ--FMDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~---------~~~~i~~~~~D~~~-l~--~~~~s 134 (659)
++.+|||+|||+|.++..++..+. .+|+|||+|+.+++.++++... ...++.++++|+.+ ++ +++++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 567999999999999999998853 5899999999999988776543 23689999999987 55 77889
Q ss_pred ccEEEecccccccCCcccchH------HHHHHHHHHHhccccCeEEEEEEcC
Q 006149 135 FDVILDKGGLDALMEPELGHK------LGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 135 FDvVi~~g~l~~l~~~~~~~~------~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+|.|+... .++..... ....++.++.++|+|||++++.+..
T Consensus 129 ~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 129 LSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp EEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 99998432 22210000 0148999999999999999997754
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.3e-11 Score=119.37 Aligned_cols=103 Identities=11% Similarity=0.014 Sum_probs=82.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-CCC--CCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QFM--DETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~~~--~~sFDvVi~ 140 (659)
++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.++++....+ .+++++++|+.+. +.. .++||+|++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 5689999999999999999987 2 4699999999999999988775544 4799999999773 322 348999997
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
...... ...+++++.++|||||++++.+..
T Consensus 143 d~~~~~----------~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 143 DADKPN----------NPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp CSCGGG----------HHHHHHHHHHTCCTTCEEEEECCS
T ss_pred CCchHH----------HHHHHHHHHHhcCCCeEEEEeCCC
Confidence 543211 458999999999999999887654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.17 E-value=3.5e-11 Score=119.62 Aligned_cols=118 Identities=9% Similarity=0.016 Sum_probs=87.6
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (659)
....+..++.. .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++.....+ .+++++++|+.+.
T Consensus 46 ~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 122 (221)
T 3u81_A 46 KGQIMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDL 122 (221)
T ss_dssp HHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHHh---cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHH
Confidence 33344444432 35689999999999999999985 2 3599999999999999887765443 4699999998653
Q ss_pred -CC-C----CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 129 -QF-M----DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 129 -~~-~----~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+. . .++||+|++.+..++... ...++..+ ++|||||++++.+...
T Consensus 123 l~~~~~~~~~~~fD~V~~d~~~~~~~~-------~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 123 IPQLKKKYDVDTLDMVFLDHWKDRYLP-------DTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp GGGTTTTSCCCCCSEEEECSCGGGHHH-------HHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred HHHHHHhcCCCceEEEEEcCCcccchH-------HHHHHHhc-cccCCCeEEEEeCCCC
Confidence 32 2 268999998776665422 23667777 9999999999877653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=123.82 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=88.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CC-CeEEEEcCCHHHHHHHHHHhhcC------------C
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD------------R 115 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~-~~VtgvD~S~~~i~~~~~~~~~~------------~ 115 (659)
++.....+...+.. .++.+|||+|||+|.++..++.. |. .+|+++|+++.+++.+++..... .
T Consensus 90 ~~~~~~~~l~~l~~---~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~ 166 (336)
T 2b25_A 90 FPKDINMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP 166 (336)
T ss_dssp CHHHHHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred CHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccC
Confidence 34444455666654 57889999999999999999987 54 69999999999999988766431 2
Q ss_pred CCcEEEEeecCCC--CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 116 SDMRWRVMDMTSM--QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 116 ~~i~~~~~D~~~l--~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
.+++++++|+.+. ++++++||+|++.. ..+. .++.++.++|+|||++++.......
T Consensus 167 ~~v~~~~~d~~~~~~~~~~~~fD~V~~~~-----~~~~-------~~l~~~~~~LkpgG~lv~~~~~~~~ 224 (336)
T 2b25_A 167 DNVDFIHKDISGATEDIKSLTFDAVALDM-----LNPH-------VTLPVFYPHLKHGGVCAVYVVNITQ 224 (336)
T ss_dssp CCEEEEESCTTCCC-------EEEEEECS-----SSTT-------TTHHHHGGGEEEEEEEEEEESSHHH
T ss_pred CceEEEECChHHcccccCCCCeeEEEECC-----CCHH-------HHHHHHHHhcCCCcEEEEEeCCHHH
Confidence 5799999999987 56677899999742 2222 4699999999999999988876443
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.7e-11 Score=126.74 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=84.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||||||+|.++..+++.|..+|+|||.|+ +++.+++....++ .+|+++++|+.++.++ ++||+|++...-+
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~ 160 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGY 160 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBT
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccc
Confidence 5789999999999999999999988999999996 6777766655544 5799999999999876 7899999876555
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi 176 (659)
.+.... .+..++....++|||||+++-
T Consensus 161 ~l~~e~----~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 161 GLLHES----MLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TBTTTC----SHHHHHHHHHHHEEEEEEEES
T ss_pred cccccc----hhhhHHHHHHhhCCCCceECC
Confidence 444322 266889999999999998863
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.1e-11 Score=125.70 Aligned_cols=106 Identities=12% Similarity=0.146 Sum_probs=89.2
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC-CCCCcccEEEecccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-FMDETFDVILDKGGL 144 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~-~~~~sFDvVi~~g~l 144 (659)
+.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++..... .+++++.+|+.+.+ +.++.||+|++..++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 789999999999999999887 3358999999 779988877665433 46999999999875 234679999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++.+.+ ...++++++++|+|||++++.+..
T Consensus 259 h~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 259 HYFDARE-----AREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp GGSCHHH-----HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccCCHHH-----HHHHHHHHHHHcCCCCEEEEEEec
Confidence 9986543 579999999999999999999865
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.15 E-value=9e-11 Score=117.40 Aligned_cols=118 Identities=13% Similarity=0.118 Sum_probs=92.0
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeec
Q 006149 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (659)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~ 125 (659)
..+.....+..++.. .++.+|||+|||+|..+..++... ..+|+++|+++.+++.++++....+ .++.++++|+
T Consensus 38 ~~~~~~~~l~~~~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 114 (233)
T 2gpy_A 38 MDLLGMESLLHLLKM---AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDA 114 (233)
T ss_dssp CCHHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCG
T ss_pred cCHHHHHHHHHHHhc---cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH
Confidence 344455555555543 357899999999999999999873 3599999999999999887765544 4699999999
Q ss_pred CCC-CCC--CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 126 TSM-QFM--DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 126 ~~l-~~~--~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+. +.. +++||+|++...... ...+++.+.++|+|||++++.+.
T Consensus 115 ~~~~~~~~~~~~fD~I~~~~~~~~----------~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 115 LQLGEKLELYPLFDVLFIDAAKGQ----------YRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp GGSHHHHTTSCCEEEEEEEGGGSC----------HHHHHHHHGGGEEEEEEEEEETT
T ss_pred HHHHHhcccCCCccEEEECCCHHH----------HHHHHHHHHHHcCCCeEEEEEcC
Confidence 875 332 578999998665431 45899999999999999998754
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.15 E-value=8.7e-11 Score=119.00 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=84.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc---CCCeEEEEcCCHHHHHHHHHHhhcC---CC--C----------------------
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRD---RS--D---------------------- 117 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~---g~~~VtgvD~S~~~i~~~~~~~~~~---~~--~---------------------- 117 (659)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.+++..... +. +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999999876 2248999999999999887655433 10 1
Q ss_pred ---cE-------------EEEeecCCCCC-----CCCcccEEEecccccccCCcc--cchHHHHHHHHHHHhccccCeEE
Q 006149 118 ---MR-------------WRVMDMTSMQF-----MDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKF 174 (659)
Q Consensus 118 ---i~-------------~~~~D~~~l~~-----~~~sFDvVi~~g~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~l 174 (659)
++ +.++|+.+... ...+||+|+++..+....... .+......+++++.++|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 66 99999987431 345899999987665543321 11234679999999999999999
Q ss_pred EEEEcC
Q 006149 175 VCLTLA 180 (659)
Q Consensus 175 vi~~~~ 180 (659)
+++...
T Consensus 211 ~~~~~~ 216 (250)
T 1o9g_A 211 AVTDRS 216 (250)
T ss_dssp EEEESS
T ss_pred EEeCcc
Confidence 996554
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-10 Score=113.94 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=89.1
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCC
Q 006149 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMD 132 (659)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~ 132 (659)
..+...+.. .++.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++.....+ +++.+..+|+.+..+++
T Consensus 81 ~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 156 (248)
T 2yvl_A 81 FYIALKLNL---NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE 156 (248)
T ss_dssp HHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred HHHHHhcCC---CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC
Confidence 345555543 57789999999999999999988 4599999999999998887765444 57999999998854366
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++||+|++. ..++. .+++++.++|+|||++++.....
T Consensus 157 ~~~D~v~~~-----~~~~~-------~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 157 GIFHAAFVD-----VREPW-------HYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp TCBSEEEEC-----SSCGG-------GGHHHHHHHBCTTCEEEEEESSH
T ss_pred CcccEEEEC-----CcCHH-------HHHHHHHHHcCCCCEEEEEeCCH
Confidence 789999973 22332 77999999999999999998753
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.8e-10 Score=110.17 Aligned_cols=107 Identities=23% Similarity=0.250 Sum_probs=80.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC---------CeEEEEcCCHHHHHHHHHHhhcCCCCcEEE-EeecCCCC------
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GF---------HGITNVDFSKVVISDMLRRNVRDRSDMRWR-VMDMTSMQ------ 129 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~---------~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~-~~D~~~l~------ 129 (659)
.++.+|||+|||+|.++..+++. +. .+|+++|+|+.. ...+++++ ++|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------PLEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------cCCCCeEEEeccCCCHHHHHHHH
Confidence 46789999999999999999987 53 589999999821 23568899 99987753
Q ss_pred --CCCCcccEEEecccccccCCcccc----hHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 130 --FMDETFDVILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 130 --~~~~sFDvVi~~g~l~~l~~~~~~----~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
+++++||+|++.++++.......+ ......+++++.++|||||++++.++..+.
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 150 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ 150 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 345689999997766543321101 011358899999999999999999876443
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=123.32 Aligned_cols=106 Identities=11% Similarity=0.085 Sum_probs=88.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++....+ .+++++++|+.+ +++. .||+|++..+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 258 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFV 258 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESC
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEccc
Confidence 467899999999999999998874 358999999 999998887765443 479999999986 4443 4999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++.+.+ ...+++++.++|+|||++++.+..
T Consensus 259 l~~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 259 LLNWPDHD-----AVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp GGGSCHHH-----HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccCCCHHH-----HHHHHHHHHHhcCCCcEEEEEEEe
Confidence 99876543 468999999999999999999875
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-10 Score=114.88 Aligned_cols=128 Identities=14% Similarity=0.062 Sum_probs=98.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
++.+|||+|||+|.++..++..+. .+|+++|+++.+++.+++.....+ .++++.++|..+...+++.||+|+..|..
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG 100 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG 100 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc
Confidence 578999999999999999999864 579999999999999987766555 46999999999876554579999876554
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeCCC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQK 206 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~ 206 (659)
..+ +..++..+.+.|+++|+|++............+. ..+|.+.-..+-.+
T Consensus 101 g~l---------I~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~--~~Gf~i~~E~lv~e 151 (230)
T 3lec_A 101 GRL---------IADILNNDIDKLQHVKTLVLQPNNREDDLRKWLA--ANDFEIVAEDILTE 151 (230)
T ss_dssp HHH---------HHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHH--HTTEEEEEEEEEEC
T ss_pred hHH---------HHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHH--HCCCEEEEEEEEEE
Confidence 432 5688999999999999999988754332222222 34788776665433
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=9.9e-11 Score=116.74 Aligned_cols=115 Identities=15% Similarity=0.196 Sum_probs=89.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CC------CeEEEEcCCHHHHHHHHHHhhcC------CCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF------HGITNVDFSKVVISDMLRRNVRD------RSD 117 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~------~~VtgvD~S~~~i~~~~~~~~~~------~~~ 117 (659)
+.....+.+++.. ...++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.++++.... ..+
T Consensus 68 p~~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 146 (227)
T 1r18_A 68 PHMHAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ 146 (227)
T ss_dssp HHHHHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHh-hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence 3444555666631 1256789999999999999999885 42 48999999999999887766443 357
Q ss_pred cEEEEeecCCCCCCC-CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 118 MRWRVMDMTSMQFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 118 i~~~~~D~~~l~~~~-~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.++++|+.+ ++++ ++||+|++...++++ ++++.++|||||++++....
T Consensus 147 v~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~-------------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 147 LLIVEGDGRK-GYPPNAPYNAIHVGAAAPDT-------------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEEESCGGG-CCGGGCSEEEEEECSCBSSC-------------CHHHHHTEEEEEEEEEEESC
T ss_pred eEEEECCccc-CCCcCCCccEEEECCchHHH-------------HHHHHHHhcCCCEEEEEEec
Confidence 9999999987 4444 789999998888765 36789999999999998754
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-10 Score=118.44 Aligned_cols=105 Identities=14% Similarity=0.093 Sum_probs=82.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcC-CHHHHHHHHHHh-----hcCC------CCcEEEEeecCCCC--C--
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF-SKVVISDMLRRN-----VRDR------SDMRWRVMDMTSMQ--F-- 130 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~-S~~~i~~~~~~~-----~~~~------~~i~~~~~D~~~l~--~-- 130 (659)
.++.+|||+|||+|.++..++..|..+|+++|+ |+.+++.+++.. ...+ .++++...|..+.. +
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 356799999999999999999888669999999 899999887765 2222 36888877766531 2
Q ss_pred --CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccc---c--CeEEEEEE
Q 006149 131 --MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK---S--GGKFVCLT 178 (659)
Q Consensus 131 --~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLk---p--GG~lvi~~ 178 (659)
++++||+|++..++++... ...+++.+.++|+ | ||+++++.
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~-------~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQA-------HDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGG-------HHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred hccCCCCCEEEEeCcccChHH-------HHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 3578999999888887543 4589999999999 9 99877654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=118.40 Aligned_cols=111 Identities=15% Similarity=0.232 Sum_probs=89.2
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 006149 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (659)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (659)
..+...+.. .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++.....+ .++.++++|+.+. +
T Consensus 102 ~~i~~~~~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~ 177 (277)
T 1o54_A 102 SFIAMMLDV---KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-F 177 (277)
T ss_dssp HHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-C
T ss_pred HHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-c
Confidence 344455543 57789999999999999999987 4 4699999999999998887765544 4799999999886 6
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++++||+|++. ..++. .++.++.++|+|||++++.+...
T Consensus 178 ~~~~~D~V~~~-----~~~~~-------~~l~~~~~~L~pgG~l~~~~~~~ 216 (277)
T 1o54_A 178 DEKDVDALFLD-----VPDPW-------NYIDKCWEALKGGGRFATVCPTT 216 (277)
T ss_dssp SCCSEEEEEEC-----CSCGG-------GTHHHHHHHEEEEEEEEEEESSH
T ss_pred cCCccCEEEEC-----CcCHH-------HHHHHHHHHcCCCCEEEEEeCCH
Confidence 66789999973 23332 78999999999999999998753
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=122.28 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=87.6
Q ss_pred CeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 70 PQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.+|||+|||+|..+..+++. +..+++++|+ +.+++.++++.... ..+++++.+|+.+ +++ ++||+|++..++++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~ 245 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGD 245 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccC
Confidence 89999999999999999887 3358999999 99999887765432 3579999999988 565 68999999999998
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.+.. ..+++++++++|+|||++++.+..
T Consensus 246 ~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 246 LDEAA-----SLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp CCHHH-----HHHHHHHHHHHSCTTCEEEEEECC
T ss_pred CCHHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 75443 569999999999999999999865
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.13 E-value=9.1e-11 Score=116.43 Aligned_cols=103 Identities=12% Similarity=0.082 Sum_probs=82.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-CCC----CcccE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-FMD----ETFDV 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~~~----~sFDv 137 (659)
++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.++++....+ .+++++++|+.+. + +.. ++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 5679999999999999999986 2 4699999999999999988775544 4599999998664 2 211 78999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+...... ....+++++.++|+|||++++.+..
T Consensus 144 v~~~~~~~----------~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 144 IYIDADKA----------NTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EEECSCGG----------GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEECCCHH----------HHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 99654321 1458999999999999999987654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=116.03 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=102.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC------CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEe
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGF------HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILD 140 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~------~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~ 140 (659)
.++.+|||+|||+|.++..+++... .+++|+|+++.+++.++......+.++.+.++|..... ..++||+|++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~-~~~~fD~Ii~ 207 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDVVIS 207 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCcc-ccCCccEEEE
Confidence 3568999999999999998887631 48999999999999887765444457899999987743 4578999999
Q ss_pred cccccccCCccc----------ch-HHHHHHHHHHHhccccCeEEEEEEcCCchhh----cchhhhh-ccCceEEEeeeC
Q 006149 141 KGGLDALMEPEL----------GH-KLGNQYLSEVKRLLKSGGKFVCLTLAESHVL----GLLFPKF-RFGWKMSVHAIP 204 (659)
Q Consensus 141 ~g~l~~l~~~~~----------~~-~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~----~~l~~~~-~~~w~~~~~~i~ 204 (659)
+..+.++...+. +. .....++..+.+.|+|||+++++.... .+. ..+...+ ..+|...+..++
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~-~~~~~~~~~ir~~l~~~~~~~~ii~lp 286 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA-MFGTSDFAKVDKFIKKNGHIEGIIKLP 286 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG-GGGSTTHHHHHHHHHHHEEEEEEEECC
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch-hcCCchHHHHHHHHHhCCeEEEeeeCC
Confidence 988765432210 00 012368999999999999999988431 111 1122222 224544444444
Q ss_pred CCCCCCCCCccEEEEEEecCC
Q 006149 205 QKSSSEPSLQTFMVVADKENS 225 (659)
Q Consensus 205 ~~~~~~~~l~~f~~v~~k~~~ 225 (659)
...-........+++.+|.+.
T Consensus 287 ~~~F~~~~~~~~i~vl~k~~~ 307 (344)
T 2f8l_A 287 ETLFKSEQARKSILILEKADV 307 (344)
T ss_dssp GGGSCC-CCCEEEEEEEECCT
T ss_pred hhhccCCCCceEEEEEECCCC
Confidence 321122234557777777554
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=114.89 Aligned_cols=103 Identities=15% Similarity=0.058 Sum_probs=81.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-CC---CCcccEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-FM---DETFDVI 138 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~~---~~sFDvV 138 (659)
++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++.....+ .+++++++|+.+. + ++ .++||+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 5689999999999999999987 2 3599999999999998887765444 4699999999764 1 11 1679999
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++.+.... ...+++++.++|+|||++++.+..
T Consensus 138 ~~d~~~~~----------~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 138 FIDADKQN----------NPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp EECSCGGG----------HHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EEcCCcHH----------HHHHHHHHHHhcCCCcEEEEeCCC
Confidence 97654221 458999999999999988886653
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-10 Score=118.33 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=75.6
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d 590 (659)
.+.||++|.+ ++++. .+.+.+||.||.|.|.+++.+.++.|..+|++|||||.++++|+++|... .+
T Consensus 78 e~~y~e~l~~-~~l~~--------~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~ 148 (304)
T 2o07_A 78 EFSYQEMIAN-LPLCS--------HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSS 148 (304)
T ss_dssp HHHHHHHHHH-HHHTT--------SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGC
T ss_pred chHHHHHHHH-HHHhh--------CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCC
Confidence 4678887654 44433 25678999999999999999999888889999999999999999998431 23
Q ss_pred CCeeEE-----------------------e------cccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 591 KSLKVF-----------------------N------HLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 591 ~rl~vf-----------------------~------~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+|++++ . ++++.+|++.++++| +++|+++.|.
T Consensus 149 ~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L---kpgG~lv~~~ 209 (304)
T 2o07_A 149 SKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTAL---KEDGVLCCQG 209 (304)
T ss_dssp TTEEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHE---EEEEEEEEEE
T ss_pred CcEEEEECcHHHHHhhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhcc---CCCeEEEEec
Confidence 444221 1 256788999999999 9999998764
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.8e-10 Score=114.15 Aligned_cols=125 Identities=13% Similarity=0.020 Sum_probs=95.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
++.+|||+|||+|.++..|+..+. ..|+++|+++.+++.+++.....+ .++++.++|..+...++++||+|+..|..
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmG 100 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMG 100 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCc
Confidence 578999999999999999999864 579999999999999987766555 46999999998865444469999875544
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeee
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 203 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i 203 (659)
..+ +..++..+.+.|+++|+|++............+. ..+|.+.-..+
T Consensus 101 g~l---------I~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~--~~Gf~i~~E~l 148 (244)
T 3gnl_A 101 GTL---------IRTILEEGAAKLAGVTKLILQPNIAAWQLREWSE--QNNWLITSEAI 148 (244)
T ss_dssp HHH---------HHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHH--HHTEEEEEEEE
T ss_pred hHH---------HHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHH--HCCCEEEEEEE
Confidence 322 5688999999999999999988654332222222 23787755554
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-10 Score=121.25 Aligned_cols=132 Identities=19% Similarity=0.059 Sum_probs=94.3
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-C--CcEEEE
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-S--DMRWRV 122 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~--~i~~~~ 122 (659)
|+.+....+..+.+++.. ..++.+|||+|||+|.++..++..|. +|+++|+|+.+++.+++.....+ . ++.+++
T Consensus 133 ~f~dq~~~~~~l~~~~~~--~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~ 209 (332)
T 2igt_A 133 VFPEQIVHWEWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC 209 (332)
T ss_dssp CCGGGHHHHHHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC
T ss_pred echHHHHHHHHHHHHHHh--cCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence 444555555566676641 02567999999999999999999887 99999999999998877665443 2 489999
Q ss_pred eecCCCCC----CCCcccEEEecccccccCCc---ccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 123 MDMTSMQF----MDETFDVILDKGGLDALMEP---ELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 123 ~D~~~l~~----~~~sFDvVi~~g~l~~l~~~---~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+|+.++.. .+++||+|++.......... .........++.++.++|+|||++++....
T Consensus 210 ~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 210 EDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp SCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 99987532 14689999985432221100 001123678999999999999997776544
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=8.9e-11 Score=118.47 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=84.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-----CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeec
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-----GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-----g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~ 125 (659)
+.....+..++.. .++.+|||||||+|..+..|++. ...+|++||+|+.+++.++ ...++++++++|+
T Consensus 67 p~~~~~l~~~l~~---~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~~~v~~~~gD~ 139 (236)
T 2bm8_A 67 PDTQAVYHDMLWE---LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDMENITLHQGDC 139 (236)
T ss_dssp HHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGCTTEEEEECCS
T ss_pred HHHHHHHHHHHHh---cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccCCceEEEECcc
Confidence 3444445555543 24579999999999999999886 2359999999998887554 1236899999999
Q ss_pred CCC---CCCC-CcccEEEecccccccCCcccchHHHHHHHHHHHh-ccccCeEEEEEEc
Q 006149 126 TSM---QFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR-LLKSGGKFVCLTL 179 (659)
Q Consensus 126 ~~l---~~~~-~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~r-vLkpGG~lvi~~~ 179 (659)
.+. +... .+||+|++.+. +. . ...++.++.+ +|||||++++.+.
T Consensus 140 ~~~~~l~~~~~~~fD~I~~d~~--~~---~-----~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 140 SDLTTFEHLREMAHPLIFIDNA--HA---N-----TFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SCSGGGGGGSSSCSSEEEEESS--CS---S-----HHHHHHHHHHHTCCTTCEEEECSC
T ss_pred hhHHHHHhhccCCCCEEEECCc--hH---h-----HHHHHHHHHHhhCCCCCEEEEEeC
Confidence 984 5433 47999997654 21 2 4589999997 9999999999764
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.2e-10 Score=116.78 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC----CCC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl----~~d 590 (659)
.+.||++|++ ++++.+ +.+.+||.||+|.|.++..+.++.|..+|++|||||.++++|+++|.- ..+
T Consensus 73 e~~y~e~l~~-~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~ 143 (296)
T 1inl_A 73 EFMYHEMLAH-VPMFLH--------PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDD 143 (296)
T ss_dssp HHHHHHHHHH-HHHHHS--------SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGC
T ss_pred hhHHHHHHhH-HHHhcC--------CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCC
Confidence 3679997775 444322 556899999999999999999988888999999999999999999821 123
Q ss_pred CCe------------------eEE-----e-------cccchhHHHHHHHhhccCCCCcEEEecCc------hHHHHHHH
Q 006149 591 KSL------------------KVF-----N-------HLFCLQLEEDVNLVLFGLSSESCIKDNSF------PEAAVQLG 634 (659)
Q Consensus 591 ~rl------------------~vf-----~-------~l~~~~f~~~~~~~Lf~~~~~g~~~~n~~------~~~~~~l~ 634 (659)
+|+ |+. + ++++.+|++.++++| +|+|+++.+.- ......++
T Consensus 144 ~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~L---kpgG~lv~~~~~~~~~~~~~~~~~~ 220 (296)
T 1inl_A 144 PRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDAL---KEDGVFSAETEDPFYDIGWFKLAYR 220 (296)
T ss_dssp TTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHE---EEEEEEEEECCCTTTTHHHHHHHHH
T ss_pred CceEEEECcHHHHHhhCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhc---CCCcEEEEEccCcccCHHHHHHHHH
Confidence 444 221 1 236689999999999 99999998742 12233445
Q ss_pred hhcc-CCcc
Q 006149 635 KLVK-FQHL 642 (659)
Q Consensus 635 ~~~~-f~~~ 642 (659)
.+.+ |++.
T Consensus 221 ~l~~~F~~v 229 (296)
T 1inl_A 221 RISKVFPIT 229 (296)
T ss_dssp HHHHHCSEE
T ss_pred HHHHHCCce
Confidence 5555 7754
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-10 Score=114.04 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=80.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-CCCCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QFMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~~~~~sFDvVi~~g 142 (659)
++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.++++....+ .+++++++|+.+. +..++ ||+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 4679999999999999999886 2 3599999999999998877664433 4699999999764 44446 99999763
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
... . ...+++++.++|+|||++++.+.
T Consensus 135 ~~~-----~-----~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 135 DVF-----N-----GADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp TTS-----C-----HHHHHHHHGGGEEEEEEEEEESS
T ss_pred Chh-----h-----hHHHHHHHHHhcCCCeEEEEECc
Confidence 211 1 45899999999999999988653
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=123.83 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=81.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhh--cCCCCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~--~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.+..+|||||||+|..+..+++.. ..+++++|+++ ++. .++.. ...++++++.+|+. .+++ +||+|++..+
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~v 256 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVA--RHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRI 256 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHT--TCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESC
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhh--cccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehh
Confidence 467899999999999999998863 34799999954 433 11111 12357999999997 3555 8999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++.+.+ ..++|++++++|||||++++.+..
T Consensus 257 lh~~~d~~-----~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 257 LHNWGDED-----SVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp GGGSCHHH-----HHHHHHHHHHTCCTTCEEEEEECC
T ss_pred ccCCCHHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 99987654 569999999999999999999865
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-10 Score=119.27 Aligned_cols=122 Identities=15% Similarity=0.038 Sum_probs=90.0
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMD 132 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~ 132 (659)
.+..++.. .++.+|||+|||+|..+..+++. +...|+++|+|+.+++.++++....+ .++.++++|+.+++..+
T Consensus 109 l~~~~l~~---~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~ 185 (315)
T 1ixk_A 109 YPPVALDP---KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELN 185 (315)
T ss_dssp HHHHHHCC---CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGC
T ss_pred HHHHHhCC---CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccccc
Confidence 34455543 57889999999999999999976 23689999999999998887765444 57999999999876556
Q ss_pred CcccEEEecc------cccccCCc------cc---chHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 133 ETFDVILDKG------GLDALMEP------EL---GHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 133 ~sFDvVi~~g------~l~~l~~~------~~---~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++||+|++.. ++....+. +. .......+++++.++|||||++++++.+
T Consensus 186 ~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 186 VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 7899999742 23221110 00 0011368999999999999999998865
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.2e-10 Score=115.26 Aligned_cols=103 Identities=8% Similarity=0.022 Sum_probs=85.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++.....+ .++.++++|+.+.+. .++||+|++....
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence 46789999999999999999987 34689999999999999887765554 578999999998743 5789999987554
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
. ...++.++.+.|+|||++++.....
T Consensus 197 ----~-------~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ----K-------THKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ----S-------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ----c-------HHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 1 2377999999999999999887653
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=120.30 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=73.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEE-EEeecCCCC---CCCCcccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW-RVMDMTSMQ---FMDETFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~-~~~D~~~l~---~~~~sFDvVi~~g~ 143 (659)
++.+|||+|||||.++..|++.|..+|+|+|+|+.|++.+.+ ..+++.. ...|+..++ ++..+||+|++..+
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r----~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~s 160 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLR----QDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVS 160 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHH----TCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCS
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHH----hCcccceecccCceecchhhCCCCCCCEEEEEee
Confidence 567999999999999999999987899999999999876432 1233332 233444443 34456999998877
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
++++ ..+|.++.++|+|||+++++
T Consensus 161 f~sl----------~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 161 FISL----------NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp SSCG----------GGTHHHHHHHSCTTCEEEEE
T ss_pred HhhH----------HHHHHHHHHHcCcCCEEEEE
Confidence 7654 27899999999999999997
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.7e-11 Score=121.07 Aligned_cols=96 Identities=17% Similarity=0.220 Sum_probs=65.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc----CCCCcEEEE-eecCCCCCCCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR----DRSDMRWRV-MDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~----~~~~i~~~~-~D~~~l~~~~~sFDvVi~~g 142 (659)
++.+|||+|||+|.++..|++.|..+|+|+|+|+.|++.++++... ...++.+.. .|+....++..+||++++
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~-- 114 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFI-- 114 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSS--
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhh--
Confidence 4679999999999999999999867999999999999875443211 012333332 222221122334444432
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
++ ..++.+++++|||||++++..
T Consensus 115 ---~l----------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 115 ---SL----------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp ---CG----------GGTHHHHHHHSCTTCEEEEEE
T ss_pred ---hH----------HHHHHHHHHhccCCCEEEEEE
Confidence 22 278999999999999999874
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=119.71 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=85.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ 129 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~ 129 (659)
.+...+.+++.. .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++.....+ .+++++++|+.+.
T Consensus 110 ~lv~~~l~~~~~---~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~- 185 (284)
T 1nv8_A 110 ELVELALELIRK---YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP- 185 (284)
T ss_dssp HHHHHHHHHHHH---HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-
T ss_pred HHHHHHHHHhcc---cCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-
Confidence 344445555532 2457999999999999999988743599999999999998877765544 2499999999873
Q ss_pred CCCCcc---cEEEecccccccCC---cc--cchHH-------HHHHHHHHH-hccccCeEEEEEE
Q 006149 130 FMDETF---DVILDKGGLDALME---PE--LGHKL-------GNQYLSEVK-RLLKSGGKFVCLT 178 (659)
Q Consensus 130 ~~~~sF---DvVi~~g~l~~l~~---~~--~~~~~-------~~~~l~ei~-rvLkpGG~lvi~~ 178 (659)
++ ++| |+|+++........ ++ ..+.. ...+++++. +.|+|||++++..
T Consensus 186 ~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 186 FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 33 579 99999732221100 00 00000 126899999 9999999999854
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.6e-10 Score=111.17 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=93.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCC-cccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDE-TFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~-sFDvVi~~g~ 143 (659)
++.+|||+|||+|.++..++..+. .+|+++|+++.+++.+++.....+ .++++.++|..+ +++.+ .||+|+..|+
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-AFEETDQVSVITIAGM 93 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGGGCCCEEEEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-hcccCcCCCEEEEcCC
Confidence 578999999999999999999863 589999999999999987766555 369999999965 23333 6999987654
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 204 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~ 204 (659)
... .+..++..+...|+++|++++....+.......+. ..+|.+.-..+-
T Consensus 94 Gg~---------~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~--~~Gf~i~~e~lv 143 (225)
T 3kr9_A 94 GGR---------LIARILEEGLGKLANVERLILQPNNREDDLRIWLQ--DHGFQIVAESIL 143 (225)
T ss_dssp CHH---------HHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHH--HTTEEEEEEEEE
T ss_pred ChH---------HHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHH--HCCCEEEEEEEE
Confidence 332 25689999999999999999977653332222222 347877766654
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.7e-10 Score=119.31 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=83.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCCCC--CCCcccEEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQF--MDETFDVIL 139 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l~~--~~~sFDvVi 139 (659)
++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++.... ..++++++++|+.++.. ++++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 5679999999999999999987 446999999999999988776521 24689999999988653 468999999
Q ss_pred ecccccccCCcccchHH-HHHHHHHHHhccccCeEEEEEEcC
Q 006149 140 DKGGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~-~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+..+........ . ...+++++.++|||||++++....
T Consensus 175 ~d~~~~~~~~~~----l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 175 IDTTDPAGPASK----LFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp EECC-------------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCCCccccchh----hhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 865543321110 0 158899999999999999997644
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=117.74 Aligned_cols=121 Identities=18% Similarity=0.067 Sum_probs=89.4
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC---
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF--- 130 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~--- 130 (659)
+..++.. .++.+|||+|||+|..+..+++. +...|+++|+++.+++.++++....+ .++.++++|+.+++.
T Consensus 75 ~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~ 151 (274)
T 3ajd_A 75 PPIVLNP---REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLL 151 (274)
T ss_dssp HHHHHCC---CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH
T ss_pred HHHHhCC---CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhh
Confidence 4445543 57889999999999999999884 44699999999999998877765544 489999999988754
Q ss_pred -CCCcccEEEecccccccCC--------cc---cchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 131 -MDETFDVILDKGGLDALME--------PE---LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 131 -~~~sFDvVi~~g~l~~l~~--------~~---~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
..++||+|++......... .+ ........+++++.++|||||++++.+.+
T Consensus 152 ~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 152 KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 2578999997632221100 00 00011468999999999999999998865
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.8e-10 Score=119.90 Aligned_cols=100 Identities=18% Similarity=0.100 Sum_probs=83.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+ ...++++++.+|+.+ +++.+ |+|++..++|
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-----~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh 272 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDA-----PAFSGVEHLGGDMFD-GVPKG--DAIFIKWICH 272 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-----CCCTTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhh-----hhcCCCEEEecCCCC-CCCCC--CEEEEechhh
Confidence 45689999999999999999886 3358999999 8776543 234789999999987 77654 9999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++.+.+ ..++|++++++|+|||++++.+..
T Consensus 273 ~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 273 DWSDEH-----CLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp GBCHHH-----HHHHHHHHHHHSCTTCEEEEEECC
T ss_pred cCCHHH-----HHHHHHHHHHHcCCCCEEEEEEec
Confidence 886554 668999999999999999999875
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.5e-10 Score=119.32 Aligned_cols=100 Identities=19% Similarity=0.088 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+ ...++++++.+|+.+ +++.+ |+|++..++|
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-----~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh 270 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEA-----PQFPGVTHVGGDMFK-EVPSG--DTILMKWILH 270 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-----CCCTTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhh-----hhcCCeEEEeCCcCC-CCCCC--CEEEehHHhc
Confidence 45689999999999999999886 3458999999 7676543 234789999999998 77754 9999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++.+.+ ..++|++++++|+|||++++.+..
T Consensus 271 ~~~d~~-----~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 271 DWSDQH-----CATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp GSCHHH-----HHHHHHHHHHHSCTTCEEEEEECC
T ss_pred cCCHHH-----HHHHHHHHHHHcCCCCEEEEEEec
Confidence 886544 678999999999999999999875
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.4e-11 Score=121.56 Aligned_cols=108 Identities=15% Similarity=0.086 Sum_probs=77.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc---CCCCcEEE--EeecCCCCCCCCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR---DRSDMRWR--VMDMTSMQFMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~---~~~~i~~~--~~D~~~l~~~~~sFDvVi~~ 141 (659)
.++.+|||+|||+|.++..+++. .+|+|||+++ ++..+.++... .+.++.++ ++|+.+++ +++||+|++.
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd 155 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCD 155 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEEC
T ss_pred CCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEEC
Confidence 46789999999999999999988 4899999998 43222111000 01168999 99999876 6899999998
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCe--EEEEEEcC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGG--KFVCLTLA 180 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG--~lvi~~~~ 180 (659)
.+ +.......+......+|.++.++||||| .|++..+.
T Consensus 156 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 156 IG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 76 4433221111111137899999999999 99998776
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-10 Score=111.30 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=75.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC---CCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF---MDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~---~~~sFDvVi~~g~ 143 (659)
.++.+|||+|||. +++|+|+.|++.++++.. .+++++++|+.++++ ++++||+|++..+
T Consensus 11 ~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~---~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~ 72 (176)
T 2ld4_A 11 SAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG---NEGRVSVENIKQLLQSAHKESSFDIILSGLV 72 (176)
T ss_dssp CTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT---TTSEEEEEEGGGGGGGCCCSSCEEEEEECCS
T ss_pred CCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc---cCcEEEEechhcCccccCCCCCEeEEEECCh
Confidence 5789999999996 239999999998877653 249999999999987 7899999999999
Q ss_pred cccc-CCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 144 LDAL-MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 144 l~~l-~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
++++ .+. ..++++++|+|||||++++..
T Consensus 73 l~~~~~~~-------~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 73 PGSTTLHS-------AEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp TTCCCCCC-------HHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcccCH-------HHHHHHHHHHCCCCEEEEEEc
Confidence 9998 554 389999999999999999954
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.1e-11 Score=120.14 Aligned_cols=103 Identities=11% Similarity=0.031 Sum_probs=82.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC-CC-----CCcccE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-FM-----DETFDV 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~-~~-----~~sFDv 137 (659)
++.+|||+|||+|..+..|++. + ..+|+++|+++.+++.+++.....+ .+++++++|+.+.. .. +++||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 5679999999999999999985 2 3699999999999988877765544 47999999997752 11 478999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|++..... ....+++++.++|+|||++++.+..
T Consensus 140 V~~d~~~~----------~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 140 IFIDADKT----------NYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp EEEESCGG----------GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEEcCChH----------HhHHHHHHHHHhcCCCeEEEEECCc
Confidence 99754321 1458899999999999999997653
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-10 Score=113.82 Aligned_cols=117 Identities=17% Similarity=0.103 Sum_probs=89.0
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeec
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~ 125 (659)
.+.....+..++.. .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++.....+ .++.++++|+
T Consensus 45 ~~~~~~~l~~l~~~---~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~ 121 (239)
T 2hnk_A 45 SPEEGQFLNILTKI---SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121 (239)
T ss_dssp CHHHHHHHHHHHHH---HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred CHHHHHHHHHHHHh---hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence 33444455555543 35789999999999999999987 2 4699999999999998887765443 3489999998
Q ss_pred CCC-C--------------CCC--CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 126 TSM-Q--------------FMD--ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 126 ~~l-~--------------~~~--~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+. + |++ ++||+|++...... ...+++++.++|+|||++++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~----------~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN----------YPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp HHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG----------HHHHHHHHHHHEEEEEEEEEECS
T ss_pred HHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH----------HHHHHHHHHHHcCCCeEEEEEcc
Confidence 653 2 222 78999998654322 45889999999999999999764
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.4e-10 Score=111.56 Aligned_cols=103 Identities=15% Similarity=0.044 Sum_probs=81.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC----CCCC--CcccE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM----QFMD--ETFDV 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l----~~~~--~sFDv 137 (659)
++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.+++.....+ .+++++++|+.+. +..+ ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 4679999999999999999986 2 3589999999999998877654433 4699999997552 2333 78999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|++..... . ...+++++.++|+|||++++.+..
T Consensus 152 V~~d~~~~-----~-----~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 152 IFIDADKR-----N-----YPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EEECSCGG-----G-----HHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EEECCCHH-----H-----HHHHHHHHHHHcCCCeEEEEeCCC
Confidence 99754321 1 568999999999999999997654
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.2e-09 Score=113.32 Aligned_cols=116 Identities=21% Similarity=0.311 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d 590 (659)
.+.||++|++ ++++. ++.+.+||.||.|.|.++..+.++.|..++++|||||.++++|+++|..- ++
T Consensus 99 e~~y~e~l~~-~~l~~--------~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~ 169 (321)
T 2pt6_A 99 EFAYHEMMTH-VPMTV--------SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYED 169 (321)
T ss_dssp HHHHHHHHHH-HHHHH--------SSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGS
T ss_pred chHHHHHHHH-HHHhc--------CCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCC
Confidence 4679997765 44433 25678999999999999999999888889999999999999999998641 24
Q ss_pred CCeeEE-----------------------------ecccchhHHHHHHHhhccCCCCcEEEecC---c---hHHHHHHHh
Q 006149 591 KSLKVF-----------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS---F---PEAAVQLGK 635 (659)
Q Consensus 591 ~rl~vf-----------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~---~---~~~~~~l~~ 635 (659)
+|+++. .++++.+|++.++++| +|+|+++.+. + ......++.
T Consensus 170 ~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~L---kpgG~lv~~~~~~~~~~~~~~~~~~~ 246 (321)
T 2pt6_A 170 KRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNAL---KPNGYCVAQCESLWIHVGTIKNMIGY 246 (321)
T ss_dssp TTEEEEESCHHHHHHHCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHE---EEEEEEEEEECCTTTCHHHHHHHHHH
T ss_pred CcEEEEEccHHHHHhhcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhc---CCCcEEEEEcCCcccCHHHHHHHHHH
Confidence 455221 1245689999999999 9999998853 2 122334455
Q ss_pred hcc-CCcc
Q 006149 636 LVK-FQHL 642 (659)
Q Consensus 636 ~~~-f~~~ 642 (659)
+.+ |++.
T Consensus 247 l~~~F~~v 254 (321)
T 2pt6_A 247 AKKLFKKV 254 (321)
T ss_dssp HHTTCSEE
T ss_pred HHHHCCCe
Confidence 545 7654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.6e-10 Score=114.11 Aligned_cols=111 Identities=14% Similarity=0.042 Sum_probs=84.8
Q ss_pred CCCeEEEECCCc--chHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC----C--CCccc
Q 006149 68 PPPQILVPGCGN--SRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF----M--DETFD 136 (659)
Q Consensus 68 ~~~~ILDiGCG~--G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~----~--~~sFD 136 (659)
...+|||||||+ +..+..+++. +..+|++||.|+.|++.++++..... .++.|+++|+.+.+. + .+.||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 346999999997 4344444443 44699999999999999888775432 369999999998521 1 34566
Q ss_pred -----EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 137 -----VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 137 -----vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
.|+++++||++.+.+. ...++.++.+.|+|||+|++.+...+
T Consensus 158 ~~~p~av~~~avLH~l~d~~~----p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDD----AVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGC----HHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred cCCcchHHhhhhHhcCCchhh----HHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 6889999999977541 34899999999999999999988743
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.6e-11 Score=121.19 Aligned_cols=108 Identities=14% Similarity=0.067 Sum_probs=77.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc---CCCCcEEE--EeecCCCCCCCCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR---DRSDMRWR--VMDMTSMQFMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~---~~~~i~~~--~~D~~~l~~~~~sFDvVi~~ 141 (659)
.++.+|||+|||+|.++..+++. .+|+|||+++ ++..+.+.... .+.++.++ ++|+.+++ +++||+|++.
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd 147 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCD 147 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEe
Confidence 46789999999999999999988 5899999998 43221111000 01168999 99999876 6899999998
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCe--EEEEEEcC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGG--KFVCLTLA 180 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG--~lvi~~~~ 180 (659)
.+ ++......+......+|..+.++||||| .|++..+.
T Consensus 148 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 148 VG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred Cc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 76 4433321111111138899999999999 99998876
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.8e-10 Score=119.88 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=83.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.+..+|||+|||+|.++..+++.. ...++++|+ +.+++.++ ..++++++++|+.+ +++. ||+|++..+++
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh 278 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP-----PLSGIEHVGGDMFA-SVPQ--GDAMILKAVCH 278 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CCTTEEEEECCTTT-CCCC--EEEEEEESSGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhh-----hcCCCEEEeCCccc-CCCC--CCEEEEecccc
Confidence 456899999999999999999874 357899999 87776442 23679999999988 6664 99999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++.+++ ...+|++++++|+|||++++.+..
T Consensus 279 ~~~d~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 279 NWSDEK-----CIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp GSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCCHHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 986544 569999999999999999998754
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-10 Score=120.96 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=82.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..++++
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~p--~~D~v~~~~~lh~ 258 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-----SNNLTYVGGDMFT-SIP--NADAVLLKYILHN 258 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----BTTEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc-----CCCcEEEeccccC-CCC--CccEEEeehhhcc
Confidence 5689999999999999999877 3358999999 888765422 3569999999977 665 3999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhcccc---CeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKS---GGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkp---GG~lvi~~~~ 180 (659)
+.+.+ ..++|++++++||| ||++++.+..
T Consensus 259 ~~d~~-----~~~~l~~~~~~L~p~~~gG~l~i~e~~ 290 (352)
T 1fp2_A 259 WTDKD-----CLRILKKCKEAVTNDGKRGKVTIIDMV 290 (352)
T ss_dssp SCHHH-----HHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred CCHHH-----HHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence 86543 56999999999999 9999999865
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=117.85 Aligned_cols=124 Identities=13% Similarity=0.183 Sum_probs=92.8
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (659)
.+...+..+. . .++.+|||+|||+|.++..++..+. .+|+|+|+++.+++.++++....+ .++++.++|+.++
T Consensus 205 ~la~~l~~~~-~---~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~ 280 (373)
T 3tm4_A 205 SIANAMIELA-E---LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL 280 (373)
T ss_dssp HHHHHHHHHH-T---CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG
T ss_pred HHHHHHHHhh-c---CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence 4444555555 3 5788999999999999999998864 489999999999999988776555 4799999999999
Q ss_pred CCCCCcccEEEecccccccCCcc-cchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 129 QFMDETFDVILDKGGLDALMEPE-LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~-~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++++++||+|+++..+....... .-......+++++.++| ||.+++++...
T Consensus 281 ~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~ 332 (373)
T 3tm4_A 281 SQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEK 332 (373)
T ss_dssp GGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCH
T ss_pred CcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCH
Confidence 88889999999976655432211 11123578899999999 66666666543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.3e-10 Score=114.23 Aligned_cols=102 Identities=15% Similarity=0.042 Sum_probs=81.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C-----CCCccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F-----MDETFD 136 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~-----~~~sFD 136 (659)
++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.+++.....+ ++++++++|+.+. + + ++++||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 5679999999999999999886 2 3599999999999999887765544 4799999998764 3 2 157899
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+|++..... . ...+++++.++|+|||++++...
T Consensus 159 ~V~~d~~~~-----~-----~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 159 FIFVDADKD-----N-----YLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp EEEECSCST-----T-----HHHHHHHHHHHBCTTCCEEEECT
T ss_pred EEEEcCchH-----H-----HHHHHHHHHHhCCCCeEEEEecC
Confidence 999754321 1 45899999999999999988653
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7.6e-10 Score=113.54 Aligned_cols=97 Identities=9% Similarity=0.010 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d 590 (659)
.+.||++|.+ ++++. ++.+++||+||+|.|.+++.+.++ + .+|++|||||.|+++|+++|... .+
T Consensus 55 ~~~y~e~l~~-~~~~~--------~~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~ 123 (262)
T 2cmg_A 55 LHIESELLAH-MGGCT--------KKELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNN 123 (262)
T ss_dssp THHHHHHHHH-HHHTT--------SSCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTC
T ss_pred HHHHHHHHHH-Hhhhc--------CCCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCC
Confidence 4689998876 33432 256789999999999999999988 7 79999999999999999999541 35
Q ss_pred CCeeEE-----------ec----c-cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 591 KSLKVF-----------NH----L-FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 591 ~rl~vf-----------~~----l-~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+|+++. +- + ....|++.|+++| +|+|+++.+.
T Consensus 124 ~rv~~~~~D~~~~~~~fD~Ii~d~~dp~~~~~~~~~~L---~pgG~lv~~~ 171 (262)
T 2cmg_A 124 KNFTHAKQLLDLDIKKYDLIFCLQEPDIHRIDGLKRML---KEDGVFISVA 171 (262)
T ss_dssp TTEEEESSGGGSCCCCEEEEEESSCCCHHHHHHHHTTE---EEEEEEEEEE
T ss_pred CeEEEEechHHHHHhhCCEEEECCCChHHHHHHHHHhc---CCCcEEEEEc
Confidence 666433 11 1 1345899999999 9999998864
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7.3e-10 Score=117.58 Aligned_cols=108 Identities=14% Similarity=0.234 Sum_probs=82.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC--CCCCCcccEEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM--QFMDETFDVIL 139 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l--~~~~~sFDvVi 139 (659)
.+.+|||||||+|..+..+++. +..+|+++|+++.+++.+++.... ..++++++++|+.+. .+++++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 4679999999999999999987 346999999999999988776542 246899999998774 23467899999
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+...... .... . .....+++++.++|+|||++++..
T Consensus 200 ~d~~~p~-~~~~-~-l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 200 VDSSDPI-GPAK-E-LFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp ECCCCTT-SGGG-G-GGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCcc-Ccch-h-hhHHHHHHHHHHhcCCCcEEEEec
Confidence 8543211 1111 0 002589999999999999999863
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.02 E-value=9.8e-10 Score=113.44 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=84.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDvVi~ 140 (659)
.+.+|||+|||+|.++..+++. +..+|++||+++.+++.+++.... ..++++++++|+.+. +..+++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 4679999999999999999987 567999999999999988776522 246899999998763 334578999998
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
............ ....+++.+.++|+|||++++....
T Consensus 155 d~~~~~~~~~~l---~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 155 DSTEPVGPAVNL---FTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp SCSSCCSCCCCC---STTHHHHHHHHHEEEEEEEEEECCC
T ss_pred CCCCCCCcchhh---hHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 554322111000 0147899999999999999998543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.6e-10 Score=116.42 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=82.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDvVi~ 140 (659)
.+.+|||||||+|..+..+++.+ ..+|++||+++.+++.+++.... ..++++++++|+.+. +..+++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 46799999999999999999873 46999999999999988776543 257899999998763 444688999998
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
........... .....+++++.++|+|||++++...
T Consensus 175 d~~~~~~~~~~---l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 175 DSSDPMGPAES---LFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp ECC--------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCCcchh---hhHHHHHHHHHhccCCCeEEEEecC
Confidence 54432111000 0124789999999999999998763
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9.1e-10 Score=115.86 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=84.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc------CCCCcEEEEeecCCC-CCCCCcccEEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------DRSDMRWRVMDMTSM-QFMDETFDVIL 139 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~------~~~~i~~~~~D~~~l-~~~~~sFDvVi 139 (659)
.+.+|||||||+|..+..+++. +..+|++||+++.+++.+++.... ..++++++++|+.+. +..+++||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 4579999999999999999987 456999999999999988776532 147899999999873 44468899999
Q ss_pred ecccccc-cCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 140 DKGGLDA-LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 140 ~~g~l~~-l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+....+. ...+. .......++++++++|+|||++++...
T Consensus 157 ~d~~~~~~~~~~~-~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 157 IDLTDPVGEDNPA-RLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EECCCCBSTTCGG-GGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ECCCCcccccCcc-hhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 8755433 00110 000035899999999999999998753
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.7e-10 Score=115.72 Aligned_cols=108 Identities=18% Similarity=0.143 Sum_probs=83.4
Q ss_pred CeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCC--CCCCCcccEEEeccccc
Q 006149 70 PQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM--QFMDETFDVILDKGGLD 145 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~-~~~i~~~~~D~~~l--~~~~~sFDvVi~~g~l~ 145 (659)
.+|||||||+|.++..+++. +..+|++||+++.+++.+++.+... .++++++++|+.++ .+++++||+|++.....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 49999999999999999984 3448999999999999887776433 46899999999875 34568999999864333
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
....... ....++++++++|+|||+|++....
T Consensus 171 ~~~~~~L---~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 171 AITPQNF---TTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp SCCCGGG---SBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cccchhh---hHHHHHHHHHHhcCCCcEEEEEecC
Confidence 2111110 0258999999999999999988764
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=118.54 Aligned_cols=131 Identities=19% Similarity=0.095 Sum_probs=94.7
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-C--CcEEEE
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-S--DMRWRV 122 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~--~i~~~~ 122 (659)
+|......+..+..++. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.+...+ . ++++++
T Consensus 195 ff~~~~~~~~~~~~~~~-----~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~ 269 (385)
T 2b78_A 195 IFLDQRQVRNELINGSA-----AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 269 (385)
T ss_dssp SCGGGHHHHHHHHHTTT-----BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE
T ss_pred cCCcHHHHHHHHHHHhc-----CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence 44444455555666542 568999999999999999998877799999999999999887765554 2 799999
Q ss_pred eecCCC-C-C--CCCcccEEEecccccccC--CcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 123 MDMTSM-Q-F--MDETFDVILDKGGLDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 123 ~D~~~l-~-~--~~~sFDvVi~~g~l~~l~--~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+|+.+. + . ...+||+|++........ ...........++..+.++|+|||++++.+...
T Consensus 270 ~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 270 MDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999773 2 1 245899999854432110 011111235678889999999999999888653
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.6e-10 Score=114.56 Aligned_cols=108 Identities=16% Similarity=0.194 Sum_probs=81.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc-----------CCCCcEEEEeecCCC-CCCCCcc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-----------DRSDMRWRVMDMTSM-QFMDETF 135 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~-----------~~~~i~~~~~D~~~l-~~~~~sF 135 (659)
++.+|||+|||+|.++..+++.+..+|++||+++.+++.+++.... ..++++++++|+.+. +. +++|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 4679999999999999999988667999999999999988776511 246799999998763 22 5789
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|+|++..... ...... -....+++++.++|+|||++++...
T Consensus 154 D~Ii~d~~~~-~~~~~~--l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 154 DVIIADSTDP-VGPAKV--LFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp EEEEEECCCC-C-------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEECCCCC-CCcchh--hhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 9999754432 111110 0025889999999999999998753
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5e-09 Score=105.11 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=85.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||.|.++..+. +...|+++|+++.+++.+++.....+.+..+.++|....+.+ ++||+|+..-+++++
T Consensus 105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~lh~L 181 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKLLPLL 181 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCHHHH
T ss_pred CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-CCcchHHHHHHHHHh
Confidence 57799999999999999887 556999999999999999888766678899999999988765 599999999888887
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
...+.+ ..+ ++...|+++|.++-..
T Consensus 182 E~q~~~-----~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 182 EREQAG-----SAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHSTT-----HHH-HHHHHCBCSEEEEEEE
T ss_pred hhhchh-----hHH-HHHHHhcCCCEEEEcC
Confidence 655422 444 7888999999888765
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-09 Score=117.57 Aligned_cols=130 Identities=13% Similarity=0.029 Sum_probs=93.0
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeec
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~ 125 (659)
+|......+..+..++ .++.+|||+|||+|.++..++..|. .|+++|+|+.+++.+++.....+....+.++|+
T Consensus 197 ~f~dqr~~r~~l~~~~-----~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~ 270 (393)
T 4dmg_A 197 YYLDQRENRRLFEAMV-----RPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEA 270 (393)
T ss_dssp SCGGGHHHHHHHHTTC-----CTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCH
T ss_pred cCCCHHHHHHHHHHHh-----cCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccH
Confidence 5555445555555554 2578999999999999999999887 599999999999998877655554456779998
Q ss_pred CCCC-CCCCcccEEEecccccccCCcc--cchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 126 TSMQ-FMDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 126 ~~l~-~~~~sFDvVi~~g~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.+.. ...+.||+|++......-.... ........++..+.++|+|||++++.+.+.
T Consensus 271 ~~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 271 LPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp HHHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 8752 2134499999764432111000 011235688999999999999999888763
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.99 E-value=5.9e-10 Score=115.68 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=72.4
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (659)
+.+...+.+.+.. .++.+|||+|||+|.++..|++.+. +|+++|+++.+++.++++....+ ++++++++|+.++
T Consensus 14 ~~i~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 14 PLIINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 89 (285)
T ss_dssp HHHHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence 3455556666654 5778999999999999999999875 99999999999998877764433 5799999999988
Q ss_pred CCCCCcccEEEecccccc
Q 006149 129 QFMDETFDVILDKGGLDA 146 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~ 146 (659)
+++ +||+|+++..++.
T Consensus 90 ~~~--~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 90 DLP--FFDTCVANLPYQI 105 (285)
T ss_dssp CCC--CCSEEEEECCGGG
T ss_pred cch--hhcEEEEecCccc
Confidence 765 7999999755543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=113.72 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=83.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcC-----CCCcEEEEeecCCC-CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSM-QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~-----~~~i~~~~~D~~~l-~~~~~sFDvVi~ 140 (659)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++..... .++++++++|+.+. +..+++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 46799999999999999998873 469999999999999887765432 47899999999774 323678999998
Q ss_pred cccccccCCcccchHH-HHHHHHHHHhccccCeEEEEEEc
Q 006149 141 KGGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~-~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
...... .... .. -..+++.+.++|+|||++++...
T Consensus 158 d~~~~~-~~~~---~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSSDPI-GPAE---TLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECCCTT-TGGG---GGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCC-Ccch---hhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 543322 1111 00 15899999999999999998854
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.99 E-value=9e-10 Score=115.91 Aligned_cols=107 Identities=18% Similarity=0.246 Sum_probs=80.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC-----CCCcEEEEeecCCC-CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSM-QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~-----~~~i~~~~~D~~~l-~~~~~sFDvVi~ 140 (659)
.+.+|||||||+|..+..+++. +..+|+++|+++.+++.+++..... .++++++++|+.+. +..+++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4579999999999999999987 4569999999999999887766432 46899999998773 334678999998
Q ss_pred cccccccCCcccchHHH-HHHHHHHHhccccCeEEEEEE
Q 006149 141 KGGLDALMEPELGHKLG-NQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~-~~~l~ei~rvLkpGG~lvi~~ 178 (659)
... +.+.... ... ..+++++.++|+|||++++..
T Consensus 188 d~~-~~~~~~~---~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSS-DPVGPAE---SLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC-----------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCC-CCCCcch---hhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 553 2221111 111 589999999999999999875
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=8.4e-10 Score=109.70 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=86.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~ 127 (659)
.....+..++.. .++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.+++.....+ .+++++++|+.+
T Consensus 56 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 132 (229)
T 2avd_A 56 EQAQLLANLARL---IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 132 (229)
T ss_dssp HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHHh---cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHH
Confidence 333444444432 35689999999999999999986 2 4699999999999998887765543 579999999866
Q ss_pred C--CCCC----CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 128 M--QFMD----ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 128 l--~~~~----~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
. .+.+ ++||+|++..... . ...+++++.++|+|||++++.+.
T Consensus 133 ~~~~~~~~~~~~~~D~v~~d~~~~-----~-----~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 133 TLDELLAAGEAGTFDVAVVDADKE-----N-----CSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp HHHHHHHTTCTTCEEEEEECSCST-----T-----HHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHHhcCCCCCccEEEECCCHH-----H-----HHHHHHHHHHHcCCCeEEEEECC
Confidence 4 2221 6899999754311 1 45889999999999999998764
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-09 Score=113.42 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=82.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDvVi~ 140 (659)
.+.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++.... ..++++++++|+.+. +..+++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 4579999999999999999987 557999999999999988776532 247899999998763 444678999997
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
...-.++..... .....+++++.++|+|||++++...+
T Consensus 170 d~~~~~~~~~~~--l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 170 DSTDPTAGQGGH--LFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EC------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCcccCchhh--hhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 533211111000 00258899999999999999997543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-09 Score=111.62 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=76.5
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC----CCC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl----~~d 590 (659)
.+.||++|.+ +.+.. .+.+.+||+||+|.|.+++.+.++.+..+|++|||||.|+++|+++|.- ..+
T Consensus 78 e~~y~e~l~~-~~l~~--------~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~ 148 (304)
T 3bwc_A 78 EFVYHEVLGH-TSLCS--------HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLAD 148 (304)
T ss_dssp HHHHHHHHHH-HHHTT--------SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGC
T ss_pred chHHHHHHhh-hhhhc--------CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCC
Confidence 4679998775 34432 2567899999999999999999988888999999999999999999821 123
Q ss_pred CCe-------------------eEE-----------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 591 KSL-------------------KVF-----------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 591 ~rl-------------------~vf-----------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+|+ |+. .+|++.+|++.++++| +|+|+++.+.
T Consensus 149 ~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~L---kpgG~lv~~~ 210 (304)
T 3bwc_A 149 PRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRIL---KPDGICCNQG 210 (304)
T ss_dssp TTEEEEESCHHHHHHSSCTTCEEEEEEECC---------CCHHHHHHHHHHE---EEEEEEEEEE
T ss_pred CcEEEEECcHHHHHHhccCCceeEEEECCCCccccchhhhHHHHHHHHHHhc---CCCcEEEEec
Confidence 333 332 2356689999999999 9999998864
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-09 Score=118.02 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=90.9
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--C
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--F 130 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~ 130 (659)
.+..++.. .++.+|||+|||+|..+..++.. +...|+++|+++.+++.++++....+ .++.++++|+.+++ +
T Consensus 250 l~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~ 326 (450)
T 2yxl_A 250 VASIVLDP---KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEII 326 (450)
T ss_dssp HHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSS
T ss_pred HHHHhcCC---CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhh
Confidence 34455544 57889999999999999999885 32689999999999998877765544 57999999999876 5
Q ss_pred CCCcccEEEec------ccccccCCc------ccch---HHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 131 MDETFDVILDK------GGLDALMEP------ELGH---KLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 131 ~~~sFDvVi~~------g~l~~l~~~------~~~~---~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++||+|++. |++...++. ++-. .....++.++.++|||||++++++.+
T Consensus 327 ~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 327 GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 55789999962 333322111 0000 01257899999999999999998876
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.4e-09 Score=112.40 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=87.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~-~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.+..+|||||||+|.++..+++. +..+++..|. +.+++.+++..... .++++++.+|+.+.+.+ .+|+|+...+|
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vl 254 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVL 254 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSG
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeec
Confidence 35679999999999999999987 3357888887 77888887665433 36899999999886654 57999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|.+.+++ ..++|+++++.|+|||++++++..
T Consensus 255 h~~~d~~-----~~~iL~~~~~al~pgg~lli~e~~ 285 (353)
T 4a6d_A 255 HDWADGK-----CSHLLERIYHTCKPGGGILVIESL 285 (353)
T ss_dssp GGSCHHH-----HHHHHHHHHHHCCTTCEEEEEECC
T ss_pred ccCCHHH-----HHHHHHHHHhhCCCCCEEEEEEee
Confidence 9987654 678999999999999999999864
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=118.77 Aligned_cols=131 Identities=17% Similarity=0.117 Sum_probs=94.9
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCC--CcEEEEe
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVM 123 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~--~i~~~~~ 123 (659)
+|.........+..++ .++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.....+- +++++++
T Consensus 200 ~f~~~~~~~~~~~~~~-----~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~ 274 (396)
T 2as0_A 200 FFLDQRENRLALEKWV-----QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG 274 (396)
T ss_dssp CCSTTHHHHHHHGGGC-----CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred ccCCHHHHHHHHHHHh-----hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEC
Confidence 4444434344444443 25789999999999999999998777999999999999998877655542 7999999
Q ss_pred ecCCCCC----CCCcccEEEecccccccCCcc--cchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 124 DMTSMQF----MDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 124 D~~~l~~----~~~sFDvVi~~g~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
|+.+... ..++||+|++........... ........++.++.++|+|||++++++...
T Consensus 275 d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 275 SAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 9987531 257899999854332211100 001236788999999999999999988763
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=110.41 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=81.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C-----CCCccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F-----MDETFD 136 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~-----~~~sFD 136 (659)
++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++.....+ .+++++++|+.+. + + ++++||
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 5679999999999999999886 2 3699999999999999887765544 3699999998764 2 2 257899
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+|+...... ....+++.+.++|+|||++++.+.
T Consensus 150 ~I~~d~~~~----------~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 150 FGFVDADKP----------NYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEEECSCGG----------GHHHHHHHHHHHEEEEEEEEEECT
T ss_pred EEEECCchH----------HHHHHHHHHHHhcCCCeEEEEecC
Confidence 999653211 156899999999999999988654
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=114.42 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=83.7
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDvVi~ 140 (659)
++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++.... ..++++++++|+.+. +..+++||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 4579999999999999999987 456999999999999988776543 146899999998774 334578999998
Q ss_pred cccccccCCcccchHHH-HHHHHHHHhccccCeEEEEEEcC
Q 006149 141 KGGLDALMEPELGHKLG-NQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~-~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
... +.+.... ... ..+++++.++|+|||++++...+
T Consensus 196 d~~-~p~~~~~---~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 196 DSS-DPIGPAE---TLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp ECC-CSSSGGG---GGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCc-CCCCcch---hhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 543 2111111 011 58999999999999999997643
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-09 Score=116.00 Aligned_cols=130 Identities=13% Similarity=0.059 Sum_probs=95.4
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCC---CcEEE
Q 006149 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS---DMRWR 121 (659)
Q Consensus 45 ewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~---~i~~~ 121 (659)
.+|.........+..+. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.....+- +++++
T Consensus 203 gff~~~~~~~~~l~~~~------~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~ 276 (396)
T 3c0k_A 203 GYYLDQRDSRLATRRYV------ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV 276 (396)
T ss_dssp SSCGGGHHHHHHHHHHC------TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CcCcCHHHHHHHHHHhh------CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEE
Confidence 45555544445555552 5689999999999999999998877999999999999998877655543 79999
Q ss_pred EeecCCCCC----CCCcccEEEecccccccCCc--ccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 122 VMDMTSMQF----MDETFDVILDKGGLDALMEP--ELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 122 ~~D~~~l~~----~~~sFDvVi~~g~l~~l~~~--~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++|+.+... ..++||+|++.......... .........++.++.++|+|||++++.+..
T Consensus 277 ~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 277 RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp ESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 999987521 14689999986433211000 000123678999999999999999998865
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=126.26 Aligned_cols=130 Identities=17% Similarity=0.084 Sum_probs=97.5
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEE
Q 006149 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWR 121 (659)
Q Consensus 45 ewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~ 121 (659)
.+|.+....+..+..+. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.....+ .+++++
T Consensus 522 G~f~d~r~~r~~l~~~~------~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i 595 (703)
T 3v97_A 522 GLFLDHRIARRMLGQMS------KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLI 595 (703)
T ss_dssp SCCGGGHHHHHHHHHHC------TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEE
T ss_pred CCcccHHHHHHHHHHhc------CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEE
Confidence 35666656666666554 468999999999999999998888789999999999999987765554 369999
Q ss_pred EeecCCC-CCCCCcccEEEecccccccCCc----ccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 122 VMDMTSM-QFMDETFDVILDKGGLDALMEP----ELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 122 ~~D~~~l-~~~~~sFDvVi~~g~l~~l~~~----~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++|+.+. +...++||+|++......-... .........++..+.++|+|||++++.+..
T Consensus 596 ~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 596 QADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp ESCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ecCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 9999883 4456789999976533211000 011234778899999999999999987765
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=110.23 Aligned_cols=127 Identities=10% Similarity=0.051 Sum_probs=82.1
Q ss_pred HHHHHHHHhhCCCCC--CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecC
Q 006149 52 QLRDPLISLIGAPTS--SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~--~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~ 126 (659)
.....+...+..... .++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.++++....+ .+++++++|+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 126 (254)
T 2h00_A 47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK 126 (254)
T ss_dssp HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchh
Confidence 344445555543211 14679999999999999988876 23599999999999999887765544 35999999987
Q ss_pred CC---CCC---CCcccEEEecccccccCCc-cc-----c--hHHHHHHHHHHHhccccCeEEEEEE
Q 006149 127 SM---QFM---DETFDVILDKGGLDALMEP-EL-----G--HKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 127 ~l---~~~---~~sFDvVi~~g~l~~l~~~-~~-----~--~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+. +++ +++||+|+++..++..... .. . ......++.+++++|||||.+.++.
T Consensus 127 ~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~ 192 (254)
T 2h00_A 127 TLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVK 192 (254)
T ss_dssp CSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHH
T ss_pred hhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEH
Confidence 62 444 2689999998766543300 00 0 0012356788899999999876653
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-09 Score=110.58 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=92.0
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEe
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVM 123 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~ 123 (659)
|+.....-+..+.+++. ++.+|||+|||+|.++..++..|..+|+++|+++.+++.+++....++ .+++++++
T Consensus 108 f~~~~~~er~ri~~~~~-----~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~ 182 (278)
T 3k6r_A 108 FSPANVKERVRMAKVAK-----PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 182 (278)
T ss_dssp CCGGGHHHHHHHHHHCC-----TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred EcCCcHHHHHHHHHhcC-----CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeC
Confidence 44444445556666664 689999999999999999999987799999999999998877665554 56999999
Q ss_pred ecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 124 D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+.+++. .+.||.|++...... ..++..+.++||+||.+.+.++.
T Consensus 183 D~~~~~~-~~~~D~Vi~~~p~~~-----------~~~l~~a~~~lk~gG~ih~~~~~ 227 (278)
T 3k6r_A 183 DNRDFPG-ENIADRILMGYVVRT-----------HEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp CTTTCCC-CSCEEEEEECCCSSG-----------GGGHHHHHHHEEEEEEEEEEEEE
T ss_pred cHHHhcc-ccCCCEEEECCCCcH-----------HHHHHHHHHHcCCCCEEEEEeee
Confidence 9998763 578999986532221 26788888999999998776654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.5e-10 Score=117.12 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=75.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcC----CHHHHHHHHHHhhcC--CCCcEEEEe-ecCCCCCCCCcccEEE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF----SKVVISDMLRRNVRD--RSDMRWRVM-DMTSMQFMDETFDVIL 139 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~----S~~~i~~~~~~~~~~--~~~i~~~~~-D~~~l~~~~~sFDvVi 139 (659)
.++.+|||+|||+|.++..+++. +.|+|||+ ++.+++.+ .... .+++.++++ |+..++ .++||+|+
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~ 153 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPI---PMSTYGWNLVRLQSGVDVFFIP--PERCDTLL 153 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCC---CCCSTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHH---HhhhcCCCCeEEEeccccccCC--cCCCCEEE
Confidence 46789999999999999999988 47999999 55333211 0111 156899998 888765 56899999
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+..+++ ......+......+|..+.++|||||.|++..+..
T Consensus 154 sd~~~~-~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 154 CDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp ECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred ECCccc-cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 977664 22111010001157899999999999999877654
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=111.36 Aligned_cols=96 Identities=14% Similarity=0.200 Sum_probs=78.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCCCCCCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l~~~~~sFDvVi~~g 142 (659)
.+.+|||||||+|.++..+++.+ .+|+++|+++.+++.+++.... ..++++++.+|+.+.. ++||+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~ 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC
Confidence 45799999999999999998887 7999999999999977654322 2468999999998764 7899999752
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.++. .+++.+.++|+|||++++...
T Consensus 148 -----~dp~-------~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 148 -----EPDI-------HRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp -----CCCH-------HHHHHHHTTEEEEEEEEEEEE
T ss_pred -----CChH-------HHHHHHHHhcCCCcEEEEEcC
Confidence 2332 489999999999999998753
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-09 Score=116.99 Aligned_cols=125 Identities=17% Similarity=0.135 Sum_probs=93.4
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-- 129 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-- 129 (659)
....+..++.. .++.+|||+|||+|..+..+++... ..|+++|+++.+++.++++....+.++.++++|+.+++
T Consensus 234 ~s~~~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~ 310 (429)
T 1sqg_A 234 SAQGCMTWLAP---QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW 310 (429)
T ss_dssp HHHTHHHHHCC---CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHH
T ss_pred HHHHHHHHcCC---CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhh
Confidence 33345555554 5788999999999999999998742 69999999999999888877665667899999999875
Q ss_pred CCCCcccEEEec------ccccccCCc------ccc---hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 130 FMDETFDVILDK------GGLDALMEP------ELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 130 ~~~~sFDvVi~~------g~l~~l~~~------~~~---~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++++||+|++. |++...++. ++. ......++.++.++|||||++++++.+
T Consensus 311 ~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 311 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred cccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 566789999963 233322110 000 011358899999999999999998865
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.8e-09 Score=112.16 Aligned_cols=99 Identities=9% Similarity=0.081 Sum_probs=82.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++.. +. +..+|+++|+|+.+++.+++.....+ .+++++++|+.+.. ++||+|++.....
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPKF 269 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTTT
T ss_pred CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcHh
Confidence 578999999999999999 77 56699999999999999887765554 47999999999875 7899999753222
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
...++..+.++|+|||.+++.++...
T Consensus 270 -----------~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 270 -----------AHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp -----------GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred -----------HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 12678999999999999999887643
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-09 Score=114.33 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=82.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC-CCC-CCCcccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS-MQF-MDETFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~-l~~-~~~sFDvVi~~g~ 143 (659)
++.+|||+| |+|.++..++..+. .+|+++|+++.+++.++++....+ .+++++++|+.+ ++. .+++||+|++...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 578999999 99999999988865 699999999999998887765433 379999999998 663 3578999998765
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEE-EEEEc
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKF-VCLTL 179 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~l-vi~~~ 179 (659)
+... ....++.++.++|+|||++ ++...
T Consensus 251 ~~~~--------~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 251 ETLE--------AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp SSHH--------HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CchH--------HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 4432 1368999999999999955 44433
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.7e-07 Score=103.32 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=86.1
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-----------------------------------------
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG----------------------------------------- 90 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g----------------------------------------- 90 (659)
.+...+..+... .++..|||++||+|.++..++..+
T Consensus 177 ~LAa~ll~~~~~---~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~ 253 (703)
T 3v97_A 177 TLAAAIVMRSGW---QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA 253 (703)
T ss_dssp HHHHHHHHHTTC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCC---CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence 455556666554 467899999999999998777531
Q ss_pred --CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC--CCCCcccEEEecccccccCCcccchHHHHHHHHHH
Q 006149 91 --FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164 (659)
Q Consensus 91 --~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei 164 (659)
...|+|+|+++.+++.++..+...+ ..+++.++|+.++. ...++||+|+++..+..-..........-+.+.++
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~ 333 (703)
T 3v97_A 254 EYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRI 333 (703)
T ss_dssp HCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHH
T ss_pred cCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHH
Confidence 1379999999999998877765555 34899999999873 33448999999866543211111111122334455
Q ss_pred HhccccCeEEEEEEcC
Q 006149 165 KRLLKSGGKFVCLTLA 180 (659)
Q Consensus 165 ~rvLkpGG~lvi~~~~ 180 (659)
.+.+.|||.+++++..
T Consensus 334 lk~~~~g~~~~ilt~~ 349 (703)
T 3v97_A 334 MKNQFGGWNLSLFSAS 349 (703)
T ss_dssp HHHHCTTCEEEEEESC
T ss_pred HHhhCCCCeEEEEeCC
Confidence 5555689999999864
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-09 Score=115.56 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=82.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.++ ..++++++.+|+.+ +++ .||+|++..++++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~ 263 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLT-----GNENLNFVGGDMFK-SIP--SADAVLLKWVLHD 263 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCC-----CCSSEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcc-----cCCCcEEEeCccCC-CCC--CceEEEEcccccC
Confidence 45799999999999999999873 348999999 66765432 23569999999988 665 4999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhcccc---CeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKS---GGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkp---GG~lvi~~~~ 180 (659)
+.+++ ..++|++++++|+| ||++++.+..
T Consensus 264 ~~d~~-----~~~~l~~~~~~L~p~~~gG~l~i~e~~ 295 (358)
T 1zg3_A 264 WNDEQ-----SLKILKNSKEAISHKGKDGKVIIIDIS 295 (358)
T ss_dssp SCHHH-----HHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred CCHHH-----HHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence 86544 56999999999999 9999998864
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-09 Score=107.07 Aligned_cols=147 Identities=15% Similarity=0.097 Sum_probs=107.4
Q ss_pred cchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecC
Q 006149 48 AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (659)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~ 126 (659)
..+..+...+...+. +..+|||+|||.|-++..++.. +...|+++|+++.+++.+++.+...+.+.++.+.|..
T Consensus 117 p~lD~fY~~i~~~i~-----~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~ 191 (281)
T 3lcv_B 117 PHLDEFYRELFRHLP-----RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLL 191 (281)
T ss_dssp GGHHHHHHHHGGGSC-----CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred HhHHHHHHHHHhccC-----CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 344444444555552 4679999999999999988877 5679999999999999998887777778899999988
Q ss_pred CCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc---C--Cchhhcchhhh----h-ccCc
Q 006149 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL---A--ESHVLGLLFPK----F-RFGW 196 (659)
Q Consensus 127 ~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~---~--~~~~~~~l~~~----~-~~~w 196 (659)
.-+ +.+.||+|++.-+++++.+... ...+ ++...|+++|.+|-..- + .+.+.+..... . ..+|
T Consensus 192 ~~~-p~~~~DvaL~lkti~~Le~q~k-----g~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~ 264 (281)
T 3lcv_B 192 EDR-LDEPADVTLLLKTLPCLETQQR-----GSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSC 264 (281)
T ss_dssp TSC-CCSCCSEEEETTCHHHHHHHST-----THHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTC
T ss_pred ccC-CCCCcchHHHHHHHHHhhhhhh-----HHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCC
Confidence 765 4588999999999999866552 2556 89999999999987654 1 22332222222 2 2478
Q ss_pred eEEEeeeCCC
Q 006149 197 KMSVHAIPQK 206 (659)
Q Consensus 197 ~~~~~~i~~~ 206 (659)
.+.-..++++
T Consensus 265 ~~~~~~~~nE 274 (281)
T 3lcv_B 265 RIQRLEIGNE 274 (281)
T ss_dssp CEEEEEETTE
T ss_pred ceeeeeecCe
Confidence 7666666543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-09 Score=118.54 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=89.8
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-CCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-FMD 132 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-~~~ 132 (659)
.+..++.. .++.+|||+|||+|..+..++.. +.+.|+++|+|+.+++.++++....+..+.++++|+.+++ +.+
T Consensus 92 l~a~~L~~---~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~ 168 (464)
T 3m6w_A 92 AVGVLLDP---KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFG 168 (464)
T ss_dssp HHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHC
T ss_pred HHHHhcCc---CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhcc
Confidence 34455554 57899999999999999999976 3358999999999999888776554433999999998875 346
Q ss_pred CcccEEEec------ccccccCCcc-----cc----hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 133 ETFDVILDK------GGLDALMEPE-----LG----HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 133 ~sFDvVi~~------g~l~~l~~~~-----~~----~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++||+|++. |++..-++.. .. ......++.++.++|||||+++.++.+
T Consensus 169 ~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 169 TYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp SCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred ccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 899999952 2222211110 00 011378999999999999999998875
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.3e-09 Score=116.15 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=86.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC-CCCcccEEEec--
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF-MDETFDVILDK-- 141 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~-~~~sFDvVi~~-- 141 (659)
++.+|||+|||+|..+..++.. +.+.|+++|+|+.+++.++++....+ .++.++++|+.+++. .+++||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 7889999999999999999986 23689999999999998877765443 579999999998753 45789999973
Q ss_pred ----ccccccCCcc------cc---hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 142 ----GGLDALMEPE------LG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 142 ----g~l~~l~~~~------~~---~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|++....+.. .. .....++|.++.++|||||++++++.+
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 2332211110 00 011457899999999999999998875
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.4e-09 Score=113.59 Aligned_cols=112 Identities=15% Similarity=0.075 Sum_probs=85.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC----CCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF----MDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~----~~~sFDvVi~~g 142 (659)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.+++.....+ .+++++++|+.+... .+++||+|++..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 4679999999999999999988 4589999999999999887765554 459999999987531 257899999754
Q ss_pred cccccCCcc--cchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 143 GLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 143 ~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
......... ........++..+.++|+|||++++.+..
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 332211100 00123678999999999999999999876
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-08 Score=109.10 Aligned_cols=175 Identities=13% Similarity=0.106 Sum_probs=111.8
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--------------CCCeEEEEcCCHHHHHHHHHHhh
Q 006149 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------------GFHGITNVDFSKVVISDMLRRNV 112 (659)
Q Consensus 47 y~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--------------g~~~VtgvD~S~~~i~~~~~~~~ 112 (659)
|.....+...+.+++.. .++.+|||+|||+|.++..+++. ...+++|+|+++.+++.++....
T Consensus 153 fyTP~~v~~~mv~~l~~---~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 153 YFTPRPLIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp GCCCHHHHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHhCC---CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 33445677777787764 56789999999999999888764 12479999999999987766554
Q ss_pred cCCC---CcEEEEeecCCCCCCCCcccEEEecccccccCCcccc----------hHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 113 RDRS---DMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELG----------HKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 113 ~~~~---~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~----------~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
..+. ++.+.++|....+.. .+||+|+++..+......... ......+++++.++|+|||+++++..
T Consensus 230 l~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 230 LHGIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp HTTCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhCCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 3432 678999999887644 489999998776653322100 00124789999999999999998874
Q ss_pred CC----chhhcchhhhh-ccCceEEEeeeCCCCCCCCCCccEEEEEEecCC
Q 006149 180 AE----SHVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (659)
Q Consensus 180 ~~----~~~~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (659)
.. ......+...+ ...+...+..++...=.....+..+++.+|.+.
T Consensus 309 ~~~L~~~~~~~~iR~~L~~~~~l~~ii~lp~~~F~~t~v~t~Il~~~k~~~ 359 (445)
T 2okc_A 309 DNVLFEAGAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP 359 (445)
T ss_dssp HHHHHCSTHHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEESSC
T ss_pred CcccccCcHHHHHHHHHHhcCcEEEEEeCCCCCccCCCCCEEEEEEECCCC
Confidence 31 11111122212 122222333443211112345667777877654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-08 Score=107.07 Aligned_cols=89 Identities=20% Similarity=0.299 Sum_probs=67.9
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~ 129 (659)
+.+...+.+.+.. .++.+|||+|||+|.++..|++.+. +|+|+|+++.+++.++++....+ ++++++++|+.+++
T Consensus 28 ~~i~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~ 103 (299)
T 2h1r_A 28 PGILDKIIYAAKI---KSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV 103 (299)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC
T ss_pred HHHHHHHHHhcCC---CCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC
Confidence 3455566666654 5678999999999999999998864 99999999999998887764333 68999999999887
Q ss_pred CCCCcccEEEeccccc
Q 006149 130 FMDETFDVILDKGGLD 145 (659)
Q Consensus 130 ~~~~sFDvVi~~g~l~ 145 (659)
++ +||+|+++...+
T Consensus 104 ~~--~~D~Vv~n~py~ 117 (299)
T 2h1r_A 104 FP--KFDVCTANIPYK 117 (299)
T ss_dssp CC--CCSEEEEECCGG
T ss_pred cc--cCCEEEEcCCcc
Confidence 54 899999875544
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.8e-09 Score=114.87 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=89.2
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FM 131 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~ 131 (659)
.+...+.. .++.+|||+|||+|..+..++.. +.+.|+++|+++.+++.++++....+ .++.++++|+.+++ ..
T Consensus 96 l~~~~L~~---~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~ 172 (456)
T 3m4x_A 96 IVGTAAAA---KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHF 172 (456)
T ss_dssp HHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHH
T ss_pred HHHHHcCC---CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhc
Confidence 34455544 57899999999999999999876 33689999999999998877665443 57899999998874 33
Q ss_pred CCcccEEEecccccc---cC-Cccc-------c----hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 132 DETFDVILDKGGLDA---LM-EPEL-------G----HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~---l~-~~~~-------~----~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++||+|++...... +. +++. . ......+|.++.++|||||+++.++.+
T Consensus 173 ~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 173 SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 578999996432111 10 1110 0 011348899999999999999998875
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.81 E-value=7.9e-09 Score=109.60 Aligned_cols=97 Identities=20% Similarity=0.320 Sum_probs=77.6
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-----CCC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----FTQ 589 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-----l~~ 589 (659)
.+.||++|++ ++++. .+.+.+||.||.|.|.++..|.++.|..+|++|||||.++++|+++|. + .
T Consensus 103 e~~y~e~L~~-l~l~~--------~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl-~ 172 (334)
T 1xj5_A 103 ECAYQEMITH-LPLCS--------IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY-E 172 (334)
T ss_dssp HHHHHHHHHH-HHHTT--------SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-G
T ss_pred chHHHHHHHH-HHHhh--------CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-C
Confidence 5789997775 45443 256789999999999999999998888899999999999999999983 2 1
Q ss_pred CCCe-------------------eEE-----------ecccchhHHHHHHHhhccCCCCcEEEec
Q 006149 590 DKSL-------------------KVF-----------NHLFCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 590 d~rl-------------------~vf-----------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
++|+ |+. .++++.+|++.++++| +++|+++.+
T Consensus 173 ~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~L---kpgG~lv~~ 234 (334)
T 1xj5_A 173 DPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARAL---RPGGVVCTQ 234 (334)
T ss_dssp STTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHE---EEEEEEEEE
T ss_pred CCcEEEEECCHHHHHHhccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhc---CCCcEEEEe
Confidence 2333 322 1245789999999999 999999886
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-08 Score=106.04 Aligned_cols=90 Identities=10% Similarity=0.077 Sum_probs=75.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (659)
+.+...+.+.+.. .++.+|||||||+|.++..|++.+. +|+++|+++.+++.++++.. ..++++++++|+.++++
T Consensus 36 ~~i~~~Iv~~l~~---~~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~-~~~~v~vi~gD~l~~~~ 110 (295)
T 3gru_A 36 KNFVNKAVESANL---TKDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKE-LYNNIEIIWGDALKVDL 110 (295)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHH-HCSSEEEEESCTTTSCG
T ss_pred HHHHHHHHHhcCC---CCcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhc-cCCCeEEEECchhhCCc
Confidence 4555566666654 5788999999999999999999864 99999999999998877764 45789999999999988
Q ss_pred CCCcccEEEeccccc
Q 006149 131 MDETFDVILDKGGLD 145 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~ 145 (659)
++.+||+|+++..++
T Consensus 111 ~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 111 NKLDFNKVVANLPYQ 125 (295)
T ss_dssp GGSCCSEEEEECCGG
T ss_pred ccCCccEEEEeCccc
Confidence 888899999875554
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-08 Score=108.45 Aligned_cols=123 Identities=22% Similarity=0.264 Sum_probs=90.1
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~ 123 (659)
.|.....+...+.+++.. .++.+|||+|||+|.++..+++. ...+|+|+|+++.+++.+ .++.++++
T Consensus 20 ~~~TP~~l~~~~~~~~~~---~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------~~~~~~~~ 88 (421)
T 2ih2_A 20 RVETPPEVVDFMVSLAEA---PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------PWAEGILA 88 (421)
T ss_dssp -CCCCHHHHHHHHHHCCC---CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------TTEEEEES
T ss_pred eEeCCHHHHHHHHHhhcc---CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------CCCcEEeC
Confidence 344456677777787753 35679999999999999999875 346999999999777543 57899999
Q ss_pred ecCCCCCCCCcccEEEecccccccCCc--------ccch--------------HHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 124 DMTSMQFMDETFDVILDKGGLDALMEP--------ELGH--------------KLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 124 D~~~l~~~~~sFDvVi~~g~l~~l~~~--------~~~~--------------~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+.+... .++||+|+++..+...... +... .....+++.+.++|+|||+++++...
T Consensus 89 D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 89 DFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp CGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 9988653 4789999997554432220 1000 01336799999999999999998864
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.5e-08 Score=103.59 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=73.0
Q ss_pred CCCCeEEEECC------CcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEE-EEeecCCCCCCCCcccE
Q 006149 67 SPPPQILVPGC------GNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRW-RVMDMTSMQFMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGC------G~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~-~~~D~~~l~~~~~sFDv 137 (659)
.++.+|||+|| |+|. ..+++. + ...|+|+|+|+. . +++++ +++|+.+++++ ++||+
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v----~~v~~~i~gD~~~~~~~-~~fD~ 126 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V----SDADSTLIGDCATVHTA-NKWDL 126 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B----CSSSEEEESCGGGCCCS-SCEEE
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C----CCCEEEEECccccCCcc-CcccE
Confidence 57889999999 4466 334433 4 358999999995 1 46889 99999998765 78999
Q ss_pred EEeccccccc----CCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 138 ILDKGGLDAL----MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 138 Vi~~g~l~~l----~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
|++....... .+..........+++++.++|||||+|++..+....
T Consensus 127 Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~ 176 (290)
T 2xyq_A 127 IISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 176 (290)
T ss_dssp EEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred EEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 9987542211 111111223668999999999999999998765443
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=5.5e-08 Score=106.74 Aligned_cols=132 Identities=8% Similarity=0.131 Sum_probs=88.4
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC----
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS---- 127 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~---- 127 (659)
+...+.+++.. .++.+|||+|||+|.++..|+..+ .+|+|+|+|+.+++.+++.+...+ .+++|+++|+.+
T Consensus 274 l~~~~~~~l~~---~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~ 349 (433)
T 1uwv_A 274 MVARALEWLDV---QPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 349 (433)
T ss_dssp HHHHHHHHHTC---CTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS
T ss_pred HHHHHHHhhcC---CCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh
Confidence 33445555543 467899999999999999999885 499999999999999877765444 579999999988
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEE
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 200 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~ 200 (659)
+++++++||+|++...... ...+++.+.+ ++|++.+++.. ....+...+......+|.+..
T Consensus 350 ~~~~~~~fD~Vv~dPPr~g----------~~~~~~~l~~-~~p~~ivyvsc-~p~tlard~~~l~~~Gy~~~~ 410 (433)
T 1uwv_A 350 QPWAKNGFDKVLLDPARAG----------AAGVMQQIIK-LEPIRIVYVSC-NPATLARDSEALLKAGYTIAR 410 (433)
T ss_dssp SGGGTTCCSEEEECCCTTC----------CHHHHHHHHH-HCCSEEEEEES-CHHHHHHHHHHHHHTTCEEEE
T ss_pred hhhhcCCCCEEEECCCCcc----------HHHHHHHHHh-cCCCeEEEEEC-ChHHHHhhHHHHHHCCcEEEE
Confidence 3456678999997433221 1234444443 68887766643 323333322222234666543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.8e-08 Score=106.94 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=75.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++..|++.+. +|+|+|+|+.+++.+++.+...+..++|+++|+.++.. .+||+|++......
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~--~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV--KGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC--TTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc--cCCCEEEEcCCccc
Confidence 3578999999999999999998865 99999999999999877665444339999999998742 28999998543221
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+ ...+++.+. .|+|||++++..
T Consensus 366 ~---------~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 L---------HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp S---------CHHHHHHHH-HHCCSEEEEEES
T ss_pred h---------HHHHHHHHH-hcCCCcEEEEEC
Confidence 1 113555554 599999888764
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-10 Score=116.42 Aligned_cols=114 Identities=14% Similarity=0.188 Sum_probs=82.2
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (659)
.....+.+.+.. .++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.++++.. ..++++++++|+.+++++
T Consensus 16 ~~~~~i~~~~~~---~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~~~~ 90 (245)
T 1yub_A 16 KVLNQIIKQLNL---KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDILQFQFP 90 (245)
T ss_dssp TTHHHHHHHCCC---CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCTTTTCC
T ss_pred HHHHHHHHhcCC---CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc-cCCceEEEECChhhcCcc
Confidence 444556666654 567899999999999999999987 599999999988876644432 346799999999998876
Q ss_pred C-CcccEEEecccccc-----------cCCcccchHHHHHHH----HHHHhccccCeEEEEEE
Q 006149 132 D-ETFDVILDKGGLDA-----------LMEPELGHKLGNQYL----SEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 132 ~-~sFDvVi~~g~l~~-----------l~~~~~~~~~~~~~l----~ei~rvLkpGG~lvi~~ 178 (659)
+ ++| .|+++...+. ..... .++ +.+.|+|+|||+++++.
T Consensus 91 ~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~-------~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 91 NKQRY-KIVGNIPYHLSTQIIKKVVFESRASD-------IYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp CSSEE-EEEEECCSSSCHHHHHHHHHHCCCEE-------EEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cCCCc-EEEEeCCccccHHHHHHHHhCCCCCe-------EEEEeeHHHHHHHhCCCCchhhhh
Confidence 4 688 6666533221 11111 234 66899999999876654
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-07 Score=96.24 Aligned_cols=86 Identities=10% Similarity=0.212 Sum_probs=69.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (659)
+.+...+.+.+.. .++.+|||||||+|.++..|++.+ .+|+++|+++.+++.++++... .++++++++|+.++++
T Consensus 15 ~~i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~-~~~v~~i~~D~~~~~~ 89 (255)
T 3tqs_A 15 SFVLQKIVSAIHP---QKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ-QKNITIYQNDALQFDF 89 (255)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT-CTTEEEEESCTTTCCG
T ss_pred HHHHHHHHHhcCC---CCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh-CCCcEEEEcchHhCCH
Confidence 3455566677654 578899999999999999999987 5999999999999988777643 5789999999999876
Q ss_pred CC----CcccEEEecc
Q 006149 131 MD----ETFDVILDKG 142 (659)
Q Consensus 131 ~~----~sFDvVi~~g 142 (659)
++ ++|| |+++-
T Consensus 90 ~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 90 SSVKTDKPLR-VVGNL 104 (255)
T ss_dssp GGSCCSSCEE-EEEEC
T ss_pred HHhccCCCeE-EEecC
Confidence 53 5688 55543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-07 Score=92.78 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=66.2
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (659)
.+...+.+.+.. .++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++.. ..++++++++|+.+++++
T Consensus 17 ~~~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~~~~ 91 (244)
T 1qam_A 17 HNIDKIMTNIRL---NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLV-DHDNFQVLNKDILQFKFP 91 (244)
T ss_dssp HHHHHHHTTCCC---CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTT-TCCSEEEECCCGGGCCCC
T ss_pred HHHHHHHHhCCC---CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhc-cCCCeEEEEChHHhCCcc
Confidence 344445555543 567899999999999999999987 499999999999998876653 346899999999999876
Q ss_pred C-CcccEEEeccc
Q 006149 132 D-ETFDVILDKGG 143 (659)
Q Consensus 132 ~-~sFDvVi~~g~ 143 (659)
+ ..| .|+++-.
T Consensus 92 ~~~~~-~vv~nlP 103 (244)
T 1qam_A 92 KNQSY-KIFGNIP 103 (244)
T ss_dssp SSCCC-EEEEECC
T ss_pred cCCCe-EEEEeCC
Confidence 4 456 4554433
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-07 Score=101.25 Aligned_cols=122 Identities=13% Similarity=0.160 Sum_probs=89.9
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC---------------------------------------C
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------------H 92 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~---------------------------------------~ 92 (659)
.+...+..+... .++..|||++||+|.++..++..+. .
T Consensus 181 ~LAaall~l~~~---~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 257 (384)
T 3ldg_A 181 NMAAAIILLSNW---FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL 257 (384)
T ss_dssp HHHHHHHHHTTC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHhCC---CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence 455555665554 5678999999999999988876422 3
Q ss_pred eEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhcccc
Q 006149 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 170 (659)
Q Consensus 93 ~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkp 170 (659)
+|+|+|+++.+++.+++.....+ ..+++.++|+.+++.+ .+||+|+++..+..-.... .....+...+.+.||+
T Consensus 258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~---~~l~~ly~~lg~~lk~ 333 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDD---KAVDILYNEMGETFAP 333 (384)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCH---HHHHHHHHHHHHHHTT
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCH---HHHHHHHHHHHHHHhh
Confidence 59999999999998877765554 3599999999998765 5899999986654322211 1255666667777765
Q ss_pred --CeEEEEEEcC
Q 006149 171 --GGKFVCLTLA 180 (659)
Q Consensus 171 --GG~lvi~~~~ 180 (659)
||.+++++..
T Consensus 334 ~~g~~~~iit~~ 345 (384)
T 3ldg_A 334 LKTWSQFILTND 345 (384)
T ss_dssp CTTSEEEEEESC
T ss_pred CCCcEEEEEECC
Confidence 9999988864
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.62 E-value=1e-07 Score=103.29 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=88.0
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC---------------------------------------C
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------------H 92 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~---------------------------------------~ 92 (659)
.+...+..+... .++..|||++||+|.++..++..+. .
T Consensus 188 ~lAa~ll~l~~~---~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 264 (393)
T 3k0b_A 188 TMAAALVLLTSW---HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL 264 (393)
T ss_dssp HHHHHHHHHSCC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHhCC---CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence 444555555554 5678999999999999988876532 3
Q ss_pred eEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhcccc
Q 006149 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 170 (659)
Q Consensus 93 ~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkp 170 (659)
.|+|+|+++.+++.+++.+...+ ..+++.++|+.+++.+ ++||+|+++..+..-... ......+...+.+.||+
T Consensus 265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~---~~~l~~ly~~lg~~lk~ 340 (393)
T 3k0b_A 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLED---EEAVRQLYREMGIVYKR 340 (393)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHH---HHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCC---chhHHHHHHHHHHHHhc
Confidence 59999999999999887765554 3599999999998765 589999988654321111 11244566666666665
Q ss_pred --CeEEEEEEcC
Q 006149 171 --GGKFVCLTLA 180 (659)
Q Consensus 171 --GG~lvi~~~~ 180 (659)
||.+++++..
T Consensus 341 ~~g~~~~iit~~ 352 (393)
T 3k0b_A 341 MPTWSVYVLTSY 352 (393)
T ss_dssp CTTCEEEEEECC
T ss_pred CCCCEEEEEECC
Confidence 9999888864
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.7e-08 Score=103.21 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=89.5
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC---------------------------------------C
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------------H 92 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~---------------------------------------~ 92 (659)
.+...+..+... .++..|||+|||+|.++..++..+. .
T Consensus 182 ~lAa~ll~~~~~---~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 258 (385)
T 3ldu_A 182 TLAAGLIYLTPW---KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF 258 (385)
T ss_dssp HHHHHHHHTSCC---CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHhhCC---CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence 344555555543 5678999999999999988876531 3
Q ss_pred eEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhcccc
Q 006149 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 170 (659)
Q Consensus 93 ~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkp 170 (659)
+|+|+|+++.+++.+++.+...+ ..+++.++|+.+++.+ ++||+|+++..+..-... ......+..++.++|++
T Consensus 259 ~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~---~~~l~~ly~~lg~~lk~ 334 (385)
T 3ldu_A 259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLED---KDSVKQLYKELGYAFRK 334 (385)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHH---HHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCC---HHHHHHHHHHHHHHHhh
Confidence 69999999999998877765544 3699999999998764 589999998765422111 12255677777777776
Q ss_pred --CeEEEEEEcC
Q 006149 171 --GGKFVCLTLA 180 (659)
Q Consensus 171 --GG~lvi~~~~ 180 (659)
||.+++++..
T Consensus 335 ~~g~~~~iit~~ 346 (385)
T 3ldu_A 335 LKNWSYYLITSY 346 (385)
T ss_dssp SBSCEEEEEESC
T ss_pred CCCCEEEEEECC
Confidence 8898888864
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-07 Score=102.29 Aligned_cols=113 Identities=11% Similarity=0.152 Sum_probs=81.9
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-- 129 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-- 129 (659)
+...+.+++.. .+.+|||+|||+|.++..++.. ..+|+++|+++.+++.+++.+...+ .+++++++|+.+..
T Consensus 202 l~~~~~~~~~~----~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~ 276 (369)
T 3bt7_A 202 MLEWALDVTKG----SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 276 (369)
T ss_dssp HHHHHHHHTTT----CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHH
T ss_pred HHHHHHHHhhc----CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHH
Confidence 33445555543 3578999999999999999875 4599999999999998877665544 58999999987752
Q ss_pred CCC--------------CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 130 FMD--------------ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 130 ~~~--------------~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
+.. .+||+|+....-. .+..++.+.|+++|+++.++.....
T Consensus 277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~-------------g~~~~~~~~l~~~g~ivyvsc~p~t 331 (369)
T 3bt7_A 277 MNGVREFNRLQGIDLKSYQCETIFVDPPRS-------------GLDSETEKMVQAYPRILYISCNPET 331 (369)
T ss_dssp HSSCCCCTTGGGSCGGGCCEEEEEECCCTT-------------CCCHHHHHHHTTSSEEEEEESCHHH
T ss_pred HhhccccccccccccccCCCCEEEECcCcc-------------ccHHHHHHHHhCCCEEEEEECCHHH
Confidence 221 3799998532211 2345566777899999999876443
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-07 Score=96.94 Aligned_cols=89 Identities=10% Similarity=0.053 Sum_probs=71.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (659)
+.+...+.+.+.. .++ +|||||||+|.++..|++.+. +|+++|+++.+++.++++.. ..+++++++|+.++++
T Consensus 33 ~~i~~~Iv~~~~~---~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~--~~~v~vi~~D~l~~~~ 105 (271)
T 3fut_A 33 EAHLRRIVEAARP---FTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLS--GLPVRLVFQDALLYPW 105 (271)
T ss_dssp HHHHHHHHHHHCC---CCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTT--TSSEEEEESCGGGSCG
T ss_pred HHHHHHHHHhcCC---CCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC--CCCEEEEECChhhCCh
Confidence 3455566666654 567 999999999999999999984 89999999999998877764 3689999999999887
Q ss_pred CCC-cccEEEecccccc
Q 006149 131 MDE-TFDVILDKGGLDA 146 (659)
Q Consensus 131 ~~~-sFDvVi~~g~l~~ 146 (659)
++. .||.|+++-..+.
T Consensus 106 ~~~~~~~~iv~NlPy~i 122 (271)
T 3fut_A 106 EEVPQGSLLVANLPYHI 122 (271)
T ss_dssp GGSCTTEEEEEEECSSC
T ss_pred hhccCccEEEecCcccc
Confidence 643 6899888755443
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.54 E-value=5.5e-07 Score=94.40 Aligned_cols=120 Identities=16% Similarity=0.102 Sum_probs=84.5
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCC-
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMD- 132 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~- 132 (659)
+..++.. .++.+|||+|||+|..+..++.. +.+.|+++|+++.+++.++++....+ .++.++++|+.+++...
T Consensus 94 ~~~~l~~---~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~ 170 (309)
T 2b9e_A 94 PAMLLDP---PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDP 170 (309)
T ss_dssp HHHHHCC---CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCG
T ss_pred HHHHhCC---CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCcccc
Confidence 4445543 57889999999999999999885 34689999999999998887776544 57999999998875332
Q ss_pred --CcccEEEec------ccccccCCc--------ccch---HHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 133 --ETFDVILDK------GGLDALMEP--------ELGH---KLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 133 --~sFDvVi~~------g~l~~l~~~--------~~~~---~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++||.|++. |++..-++. +.-. ....++|..+.++|+ ||+++..+.+
T Consensus 171 ~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 171 RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 579999963 223221110 0000 113467888888887 9999988765
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=4.5e-07 Score=92.10 Aligned_cols=76 Identities=8% Similarity=0.176 Sum_probs=61.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (659)
+.+...+.+.+.. .++.+|||+|||+|.++..|++.+..+|+++|+++.+++.++++ ...+++++++|+.++++
T Consensus 17 ~~i~~~iv~~~~~---~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~~~~v~~i~~D~~~~~~ 90 (249)
T 3ftd_A 17 EGVLKKIAEELNI---EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---GDERLEVINEDASKFPF 90 (249)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---CCTTEEEECSCTTTCCG
T ss_pred HHHHHHHHHhcCC---CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---cCCCeEEEEcchhhCCh
Confidence 3455556666654 56789999999999999999998656999999999999877544 34689999999999987
Q ss_pred CC
Q 006149 131 MD 132 (659)
Q Consensus 131 ~~ 132 (659)
++
T Consensus 91 ~~ 92 (249)
T 3ftd_A 91 CS 92 (249)
T ss_dssp GG
T ss_pred hH
Confidence 64
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=6.1e-07 Score=91.34 Aligned_cols=147 Identities=14% Similarity=0.067 Sum_probs=90.1
Q ss_pred CCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHh-hcCCCCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRN-VRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~-~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
..++.+|||+|||+|.++..+++. +...++++|++..+. +.... ...+.++.+...++....+++++||+|++..+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~--~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~a 149 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIG 149 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC--CCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc--ccccccCcCCCCeEEEeccceehhcCCCCccEEEecCc
Confidence 357789999999999999988876 556788999884221 00000 00112566677777666777889999999876
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccC-eEEEEEEcC--CchhhcchhhhhccCceEEEeeeCCCCCCCCCCccEEE
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSG-GKFVCLTLA--ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMV 218 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpG-G~lvi~~~~--~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~l~~f~~ 218 (659)
.+ ......+......+|+.+.++|+|| |.|++-.+. .+.+ ..++..++..|..-...-+ +......+.|++
T Consensus 150 pn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~-~~l~~~lk~~F~~V~~~KP--aSR~~S~E~Y~V 223 (277)
T 3evf_A 150 ES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDV-LEKLELLQRRFGGTVIRNP--LSRNSTHEMYYV 223 (277)
T ss_dssp CC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHH-HHHHHHHHHHHCCEEECCT--TSCTTCCCEEEE
T ss_pred cC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccH-HHHHHHHHHhcCCEEEEeC--CCCCCCCceEEE
Confidence 66 3332211111223588999999999 999997776 3333 2344444443333332333 333344455544
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=3.7e-07 Score=98.39 Aligned_cols=100 Identities=14% Similarity=0.034 Sum_probs=76.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC---------------C-CCcEEEEeecCCCCC
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD---------------R-SDMRWRVMDMTSMQF 130 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~---------------~-~~i~~~~~D~~~l~~ 130 (659)
++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++..... + .+++++++|+.++..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 3679999999999999999987 5568999999999999887665444 3 238999999877521
Q ss_pred -CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 131 -MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 131 -~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
..+.||+|+... .... ..++..+.+.|++||.+++..
T Consensus 127 ~~~~~fD~I~lDP----~~~~-------~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP----FGSP-------MEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC----SSCC-------HHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC----CCCH-------HHHHHHHHHhcCCCCEEEEEe
Confidence 135799999432 1111 378999999999999776654
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-06 Score=96.74 Aligned_cols=174 Identities=8% Similarity=0.022 Sum_probs=108.8
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc----C---------------CCeEEEEcCCHHHHHHHHH
Q 006149 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G---------------FHGITNVDFSKVVISDMLR 109 (659)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~----g---------------~~~VtgvD~S~~~i~~~~~ 109 (659)
....+...+.+++.. .++.+|||+|||+|.++..+++. + ..+++|+|+++.++..++.
T Consensus 153 TP~~iv~~mv~~l~p---~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~ 229 (541)
T 2ar0_A 153 TPRPLIKTIIHLLKP---QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM 229 (541)
T ss_dssp CCHHHHHHHHHHHCC---CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcc---CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHH
Confidence 445666777777764 56789999999999998877653 1 1379999999999987765
Q ss_pred HhhcCC-CC-----cEEEEeecCCCC-CCCCcccEEEecccccccCCcc--c-----chHHHHHHHHHHHhccccCeEEE
Q 006149 110 RNVRDR-SD-----MRWRVMDMTSMQ-FMDETFDVILDKGGLDALMEPE--L-----GHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 110 ~~~~~~-~~-----i~~~~~D~~~l~-~~~~sFDvVi~~g~l~~l~~~~--~-----~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
.....+ .. +.+.++|....+ ...++||+|+++..+....... . ....-..++..+.+.|+|||+++
T Consensus 230 nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 309 (541)
T 2ar0_A 230 NCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 309 (541)
T ss_dssp HHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEE
Confidence 544333 32 788999987653 3457899999987665432210 0 00112378999999999999999
Q ss_pred EEEcCC----chhhcchhhhh-ccCceEEEeeeCCCCCCCCCCccEEEEEEecCC
Q 006149 176 CLTLAE----SHVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (659)
Q Consensus 176 i~~~~~----~~~~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (659)
++.... ......+...+ ..++...+..++...=.....+..+++.+|.+.
T Consensus 310 ~V~p~~~L~~~~~~~~iR~~L~~~~~l~~ii~Lp~~~F~~t~v~t~Ilvl~k~~~ 364 (541)
T 2ar0_A 310 VVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 364 (541)
T ss_dssp EEEEHHHHHCCTHHHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBCS
T ss_pred EEecCcceecCcHHHHHHHHHhhcCCEEEEEEcCcCcccCCCCcEEEEEEECCCC
Confidence 887531 11001121211 123333344444321112345567777777554
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.3e-07 Score=94.78 Aligned_cols=88 Identities=15% Similarity=0.094 Sum_probs=69.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (659)
+.+...+.+++.. .++.+|||+|||+|..+..+++.. ..+|+|+|+|+.+++.++++....+.+++++++|+.+++
T Consensus 12 pvLl~e~l~~L~~---~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~ 88 (301)
T 1m6y_A 12 PVMVREVIEFLKP---EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD 88 (301)
T ss_dssp CTTHHHHHHHHCC---CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 3455556677754 578899999999999999999873 459999999999999998877554578999999998875
Q ss_pred --CC---CCcccEEEec
Q 006149 130 --FM---DETFDVILDK 141 (659)
Q Consensus 130 --~~---~~sFDvVi~~ 141 (659)
+. .++||.|+..
T Consensus 89 ~~l~~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 89 FLLKTLGIEKVDGILMD 105 (301)
T ss_dssp HHHHHTTCSCEEEEEEE
T ss_pred HHHHhcCCCCCCEEEEc
Confidence 22 1579999854
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-06 Score=90.18 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=61.2
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCe----EEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG----ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~----VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~ 127 (659)
.+...+.+.+.. .++.+|||||||+|.++..|++.+. . |+++|+++.+++.++++. ..+++++++|+.+
T Consensus 29 ~i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~---~~~v~~i~~D~~~ 101 (279)
T 3uzu_A 29 GVIDAIVAAIRP---ERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF---GELLELHAGDALT 101 (279)
T ss_dssp HHHHHHHHHHCC---CTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH---GGGEEEEESCGGG
T ss_pred HHHHHHHHhcCC---CCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc---CCCcEEEECChhc
Confidence 455556666654 5788999999999999999998864 4 999999999999887763 5679999999999
Q ss_pred CCCCC
Q 006149 128 MQFMD 132 (659)
Q Consensus 128 l~~~~ 132 (659)
+++++
T Consensus 102 ~~~~~ 106 (279)
T 3uzu_A 102 FDFGS 106 (279)
T ss_dssp CCGGG
T ss_pred CChhH
Confidence 88653
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.33 E-value=7.6e-06 Score=92.14 Aligned_cols=178 Identities=10% Similarity=0.044 Sum_probs=111.3
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--------C--------CCeEEEEcCCHHHHHH
Q 006149 43 SFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------G--------FHGITNVDFSKVVISD 106 (659)
Q Consensus 43 ~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--------g--------~~~VtgvD~S~~~i~~ 106 (659)
...-|.....+...+.+++.. .+ .+|||++||+|.+...+++. + ..+++|+|+++.++..
T Consensus 223 ~~G~fyTP~~Vv~lmv~ll~p---~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~l 298 (544)
T 3khk_A 223 QGGQYYTPKSIVTLIVEMLEP---YK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKL 298 (544)
T ss_dssp CSTTTCCCHHHHHHHHHHHCC---CS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHH
T ss_pred cCCeEeCCHHHHHHHHHHHhc---CC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHH
Confidence 334445567788888888864 33 49999999999998776432 0 2379999999999987
Q ss_pred HHHHhhcCCC--CcEEEEeecCCCC-CCCCcccEEEeccccccc--CC---------------------cccchHHHHHH
Q 006149 107 MLRRNVRDRS--DMRWRVMDMTSMQ-FMDETFDVILDKGGLDAL--ME---------------------PELGHKLGNQY 160 (659)
Q Consensus 107 ~~~~~~~~~~--~i~~~~~D~~~l~-~~~~sFDvVi~~g~l~~l--~~---------------------~~~~~~~~~~~ 160 (659)
++......+. ++.+.++|....+ +.+.+||+|+++..+..- .. +.... .--.+
T Consensus 299 A~~Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~-~~~~F 377 (544)
T 3khk_A 299 AAMNMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGN-ANFAW 377 (544)
T ss_dssp HHHHHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTC-THHHH
T ss_pred HHHHHHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcc-hhHHH
Confidence 7655444432 3444778876654 456799999998665431 00 00000 01258
Q ss_pred HHHHHhccccCeEEEEEEcCCchh-----hcchhhhh-ccCceEEEeeeCCCCCCCCCCccEEEEEEecCC
Q 006149 161 LSEVKRLLKSGGKFVCLTLAESHV-----LGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (659)
Q Consensus 161 l~ei~rvLkpGG~lvi~~~~~~~~-----~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (659)
+..+.+.|+|||+++++....--. ...+-+.+ ..++...+..++...=.....+..+++.+|.+.
T Consensus 378 l~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~Ilvl~K~k~ 448 (544)
T 3khk_A 378 MLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDKN 448 (544)
T ss_dssp HHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESCCS
T ss_pred HHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeEEEEEecCCC
Confidence 999999999999998887531101 11122222 234555566665321123456678888887664
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=8.5e-07 Score=95.81 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=77.7
Q ss_pred CCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CC--cEEEEeecCCCC--CCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SD--MRWRVMDMTSMQ--FMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~--i~~~~~D~~~l~--~~~~sFDvVi~ 140 (659)
++.+|||++||+|.++..++.. |...|+++|+++.+++.+++.....+ .+ ++++++|+.+.- ...+.||+|+.
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4689999999999999999885 44689999999999998877665555 33 899999987642 12468999997
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.. .... ..++..+.+.|++||++++..
T Consensus 132 DP----~g~~-------~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP----FGTP-------VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC----SSCC-------HHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----CcCH-------HHHHHHHHHHhCCCCEEEEEe
Confidence 54 1111 268889999999999776655
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.30 E-value=6e-07 Score=91.55 Aligned_cols=148 Identities=11% Similarity=0.088 Sum_probs=88.7
Q ss_pred CCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
..++.+|||+|||+|.++..+++. +...|+|+|++..+...... ....+.++.+...++....++.+.+|+|++..+.
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmAp 166 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-RTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIGE 166 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCGGGSCCCCCSEEEECCCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-cccCCCceEEeeCCcchhhcCCCCcCEEEecCcc
Confidence 357789999999999999988854 66689999998642111100 0011224444554443344567899999998777
Q ss_pred cccCCcccchHHHHHHHHHHHhccccC--eEEEEEEcC--CchhhcchhhhhccCceEEEeeeCCCCCCCCCCccEEE
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSG--GKFVCLTLA--ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMV 218 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpG--G~lvi~~~~--~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~l~~f~~ 218 (659)
+ ......+......+|.-+.++|+|| |.|++-.+. .+.+. .++..++..|..-...-+ +......+.|++
T Consensus 167 n-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~-~l~~~lk~~F~~V~~~KP--aSR~~S~E~Y~V 240 (282)
T 3gcz_A 167 S-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIM-EELSRLQLKHGGGLVRVP--LSRNSTHEMYWV 240 (282)
T ss_dssp C-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHH-HHHHHHHHHHCCEEECCT--TSCTTCCCEEEE
T ss_pred C-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHH-HHHHHHHHhcCCEEEEcC--CCcccCcceeEE
Confidence 7 4332222222234588889999999 999998887 44432 344444443333332333 333444455544
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.7e-07 Score=96.95 Aligned_cols=74 Identities=8% Similarity=-0.129 Sum_probs=61.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC--C-CCcEEEEeecCCC-CC-CCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--R-SDMRWRVMDMTSM-QF-MDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~--~-~~i~~~~~D~~~l-~~-~~~sFDvVi~~g 142 (659)
++.+|||+|||+|..+..|+..+. +|+++|+|+.+++.+++..... + .+++++++|+.+. +. ++++||+|++..
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDP 171 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDP 171 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECC
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECC
Confidence 478999999999999999988875 9999999999999887766433 3 5799999999885 32 346899999753
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.5e-05 Score=89.69 Aligned_cols=181 Identities=11% Similarity=-0.005 Sum_probs=114.5
Q ss_pred cccccchhHHHHHHHHhhCCC-CCCCCCeEEEECCCcchHHHHHHHc----CCCeEEEEcCCHHHHHHHHHHhhcCC---
Q 006149 44 FEWYAEWPQLRDPLISLIGAP-TSSPPPQILVPGCGNSRLSEHLYDA----GFHGITNVDFSKVVISDMLRRNVRDR--- 115 (659)
Q Consensus 44 fewy~~~~~l~~~l~~~l~~~-~~~~~~~ILDiGCG~G~~s~~La~~----g~~~VtgvD~S~~~i~~~~~~~~~~~--- 115 (659)
..-|.....+...+.+++... .+.++.+|||++||+|.+...+++. +..+++|+|+++.++..++....-.+
T Consensus 196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 275 (542)
T 3lkd_A 196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI 275 (542)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc
Confidence 333445567777788877631 1246789999999999998877765 24589999999999987765443333
Q ss_pred CCcEEEEeecCCC--C-CCCCcccEEEecccccccCCccc-----------c---h--HHHHHHHHHHHhccc-cCeEEE
Q 006149 116 SDMRWRVMDMTSM--Q-FMDETFDVILDKGGLDALMEPEL-----------G---H--KLGNQYLSEVKRLLK-SGGKFV 175 (659)
Q Consensus 116 ~~i~~~~~D~~~l--~-~~~~sFDvVi~~g~l~~l~~~~~-----------~---~--~~~~~~l~ei~rvLk-pGG~lv 175 (659)
.++.+.++|.... | .....||+|+++..+..-..... + + ..--.++..+.+.|+ +||++.
T Consensus 276 ~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a 355 (542)
T 3lkd_A 276 ENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA 355 (542)
T ss_dssp GGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred CccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence 3578999998876 3 34678999998865532110000 0 0 001258999999999 999998
Q ss_pred EEEcCCchhh----cchhhhh-ccCceEEEeeeCCCCCCCCCCccEEEEEEecC
Q 006149 176 CLTLAESHVL----GLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKEN 224 (659)
Q Consensus 176 i~~~~~~~~~----~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~ 224 (659)
++....--+. ..+-..+ ..++...+..++..-=.....+..+++.+|.+
T Consensus 356 ~VlP~g~Lf~~~~~~~iRk~Lle~~~l~~II~LP~~lF~~t~i~t~Ilvl~K~k 409 (542)
T 3lkd_A 356 IVLPHGVLFRGNAEGTIRKALLEEGAIDTVIGLPANIFFNTSIPTTVIILKKNR 409 (542)
T ss_dssp EEEETHHHHCCTHHHHHHHHHHHTTCEEEEEECCSSCSSSCCCCEEEEEECSSC
T ss_pred EEecchHhhCCchhHHHHHHHHhCCceeEEEEccccccCCCCCcEEEEEEecCC
Confidence 8876421111 1122222 23555556666542212345666888887754
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.5e-07 Score=93.41 Aligned_cols=79 Identities=13% Similarity=0.089 Sum_probs=61.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCH-------HHHHHHHHHhhcCC--CCcEEEEeecCCC-C-CCC--C
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK-------VVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-FMD--E 133 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~-------~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~~~--~ 133 (659)
.++.+|||+|||+|.++..++..+. +|+++|+++ .+++.+++.....+ .+++++++|+.++ + +++ +
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 3568999999999999999999875 899999999 88887754332222 3599999999875 3 444 7
Q ss_pred cccEEEecccccc
Q 006149 134 TFDVILDKGGLDA 146 (659)
Q Consensus 134 sFDvVi~~g~l~~ 146 (659)
+||+|++...+.+
T Consensus 161 ~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 161 KPDIVYLDPMYPE 173 (258)
T ss_dssp CCSEEEECCCC--
T ss_pred CccEEEECCCCCC
Confidence 8999998766654
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.24 E-value=9.5e-07 Score=89.88 Aligned_cols=86 Identities=12% Similarity=0.113 Sum_probs=63.4
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCe--EEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~--VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (659)
.+...+.+.+.. .++.+|||||||+|.++. +.. + .+ |+++|+++.+++.++++... .++++++++|+.+++
T Consensus 8 ~i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~-~~~v~~i~~D~~~~~ 80 (252)
T 1qyr_A 8 FVIDSIVSAINP---QKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFL-GPKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHCC---CTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTT-GGGEEEECSCGGGCC
T ss_pred HHHHHHHHhcCC---CCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhcc-CCceEEEECchhhCC
Confidence 445556666654 567899999999999999 754 4 36 99999999999987655432 357999999999987
Q ss_pred CCCC-----cccEEEecccc
Q 006149 130 FMDE-----TFDVILDKGGL 144 (659)
Q Consensus 130 ~~~~-----sFDvVi~~g~l 144 (659)
+++. ..|.|+++-..
T Consensus 81 ~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 81 FGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp HHHHHHHHTSCEEEEEECCT
T ss_pred HHHhhcccCCceEEEECCCC
Confidence 6432 24567766443
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=82.75 Aligned_cols=109 Identities=22% Similarity=0.296 Sum_probs=82.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc------CCCCcEEEEeecCCC-CCCCCcccEEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------DRSDMRWRVMDMTSM-QFMDETFDVIL 139 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~------~~~~i~~~~~D~~~l-~~~~~sFDvVi 139 (659)
.+.+||.||-|.|..+..+++. +..+|+.||+++.+++.+++.... ..++++++.+|.... .-..++||+|+
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi 162 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII 162 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence 5679999999999999999987 457999999999999988765421 347899999999886 34567899999
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.-.+ +...... .---..+++.+++.|+|||++++..-
T Consensus 163 ~D~~-dp~~~~~--~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 163 SDCT-DPIGPGE--SLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp ESCC-CCCCTTC--CSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred EeCC-CcCCCch--hhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 6432 1111100 00023789999999999999998653
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.6e-06 Score=96.88 Aligned_cols=100 Identities=16% Similarity=0.102 Sum_probs=72.5
Q ss_pred CCeEEEECCCcchHHHHHHH---cCCC--eEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCCCCcccEEEec
Q 006149 69 PPQILVPGCGNSRLSEHLYD---AGFH--GITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDK 141 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~---~g~~--~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDvVi~~ 141 (659)
...|||+|||+|-++...++ .+.. +|++|+-|+.+.. +++....+ ...|+++.+|+++...| +++|+|++.
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~-a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE 435 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVV-TLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE 435 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHH-HHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHH-HHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence 45799999999999544433 3332 6899999986664 44433333 36799999999998776 789999987
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
..-+.+.... +...+....|+|||||+++
T Consensus 436 wMG~fLl~E~-----mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 436 LLGSFADNEL-----SPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCBTTBGGGC-----HHHHHHHHGGGEEEEEEEE
T ss_pred cCcccccccC-----CHHHHHHHHHhcCCCcEEc
Confidence 6544433221 3467888899999999875
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.6e-06 Score=98.69 Aligned_cols=102 Identities=20% Similarity=0.148 Sum_probs=74.7
Q ss_pred CCeEEEECCCcchHHHHHHHc----C----------CCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCCCCC--
Q 006149 69 PPQILVPGCGNSRLSEHLYDA----G----------FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQFM-- 131 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~----g----------~~~VtgvD~S~~~i~~~~~~~~~~-~~~i~~~~~D~~~l~~~-- 131 (659)
...|||+|||+|-++...+.. + ..+|++||.++.++..++.+.... ...|+++.+|+++...+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 458999999999997432221 2 238999999998776555554322 36799999999998764
Q ss_pred ---CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 132 ---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 132 ---~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
.++.|+|++...-+.. +.+ ....+|..+.++|||||+++
T Consensus 490 ~~~~ekVDIIVSElmGsfl-~nE----L~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFG-DNE----LSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBTTB-GGG----SHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEecccccc-chh----ccHHHHHHHHHhCCCCcEEE
Confidence 5899999997664432 222 14578888899999999876
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-05 Score=77.07 Aligned_cols=115 Identities=12% Similarity=-0.023 Sum_probs=80.7
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC----CCcEE
Q 006149 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR----SDMRW 120 (659)
Q Consensus 45 ewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~----~~i~~ 120 (659)
-|..-.+.....|...+. +..+|||+||| ..+..++....++|+.||.++...+.+++.....+ .++++
T Consensus 12 P~~~v~~~~~~~L~~~l~-----~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~ 84 (202)
T 3cvo_A 12 PELTMPPAEAEALRMAYE-----EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNI 84 (202)
T ss_dssp CCCCSCHHHHHHHHHHHH-----HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEE
T ss_pred CCccCCHHHHHHHHHHhh-----CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 354444444445555443 46799999996 56777776523699999999999999887766544 47999
Q ss_pred EEeecCCC---------------C--------C-CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEE
Q 006149 121 RVMDMTSM---------------Q--------F-MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176 (659)
Q Consensus 121 ~~~D~~~l---------------~--------~-~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi 176 (659)
+.+|+... + . ..++||+|+.-+-. ...++..+.+.|+|||++++
T Consensus 85 ~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k------------~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 85 VWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF------------RVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp EECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS------------HHHHHHHHHHHCSSCEEEEE
T ss_pred EEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC------------chhHHHHHHHhcCCCeEEEE
Confidence 99997542 1 1 23789999965521 23667778899999999976
Q ss_pred EE
Q 006149 177 LT 178 (659)
Q Consensus 177 ~~ 178 (659)
-.
T Consensus 153 DN 154 (202)
T 3cvo_A 153 DD 154 (202)
T ss_dssp TT
T ss_pred eC
Confidence 55
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-05 Score=84.92 Aligned_cols=114 Identities=15% Similarity=0.071 Sum_probs=78.2
Q ss_pred CCeEEEECCCcchHHHHHHHc----------------CCCeEEEEcCCHHHHHHHHHHhhcCC-------------CCcE
Q 006149 69 PPQILVPGCGNSRLSEHLYDA----------------GFHGITNVDFSKVVISDMLRRNVRDR-------------SDMR 119 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~----------------g~~~VtgvD~S~~~i~~~~~~~~~~~-------------~~i~ 119 (659)
..+|+|+|||+|..+..+... ..-+|..-|..........+...... .+-.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 579999999999999877321 12367788877655544433332210 1123
Q ss_pred EEEeecCC---CCCCCCcccEEEecccccccCCcccch-------------------------------HHHHHHHHHHH
Q 006149 120 WRVMDMTS---MQFMDETFDVILDKGGLDALMEPELGH-------------------------------KLGNQYLSEVK 165 (659)
Q Consensus 120 ~~~~D~~~---l~~~~~sFDvVi~~g~l~~l~~~~~~~-------------------------------~~~~~~l~ei~ 165 (659)
|..+.... -.||+++||+|++..+|||+....... ..+..+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 358899999999999999987443211 13667899999
Q ss_pred hccccCeEEEEEEcCCc
Q 006149 166 RLLKSGGKFVCLTLAES 182 (659)
Q Consensus 166 rvLkpGG~lvi~~~~~~ 182 (659)
+.|+|||++++...+..
T Consensus 213 ~eL~pGG~mvl~~~gr~ 229 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRT 229 (374)
T ss_dssp HHEEEEEEEEEEEEECC
T ss_pred HHhCCCCEEEEEEecCC
Confidence 99999999999998754
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.5e-05 Score=83.89 Aligned_cols=114 Identities=14% Similarity=0.026 Sum_probs=80.3
Q ss_pred CCeEEEECCCcchHHHHHHHc------------------CCCeEEEEcCC-----------HHHHHHHHHHhhcCCCCcE
Q 006149 69 PPQILVPGCGNSRLSEHLYDA------------------GFHGITNVDFS-----------KVVISDMLRRNVRDRSDMR 119 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~------------------g~~~VtgvD~S-----------~~~i~~~~~~~~~~~~~i~ 119 (659)
..+|+|+||++|..|..+... ..-+|+..|.. +.+.+.+.+.. ....+..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~-g~~~~~~ 131 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN-GRKIGSC 131 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT-CCCTTSE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc-cCCCCce
Confidence 579999999999999877653 11357788877 54444332221 1123457
Q ss_pred EEEeecCCC---CCCCCcccEEEecccccccCCcccch--------------------------------HHHHHHHHHH
Q 006149 120 WRVMDMTSM---QFMDETFDVILDKGGLDALMEPELGH--------------------------------KLGNQYLSEV 164 (659)
Q Consensus 120 ~~~~D~~~l---~~~~~sFDvVi~~g~l~~l~~~~~~~--------------------------------~~~~~~l~ei 164 (659)
|+.+....+ .|++++||+|+++.+|||+....... ..+..+|+..
T Consensus 132 f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 132 LIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766654 68899999999999999987543220 1133448888
Q ss_pred HhccccCeEEEEEEcCCch
Q 006149 165 KRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 165 ~rvLkpGG~lvi~~~~~~~ 183 (659)
.+.|+|||++++..++...
T Consensus 212 a~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 212 SEELISRGRMLLTFICKED 230 (384)
T ss_dssp HHHEEEEEEEEEEEECCCT
T ss_pred HHHhccCCeEEEEEecCCC
Confidence 9999999999999988654
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.04 E-value=3.5e-06 Score=85.94 Aligned_cols=104 Identities=11% Similarity=0.050 Sum_probs=67.6
Q ss_pred HHHhhCCCCCCCC--CeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHh---h----cCC---CCcEEEEee
Q 006149 57 LISLIGAPTSSPP--PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN---V----RDR---SDMRWRVMD 124 (659)
Q Consensus 57 l~~~l~~~~~~~~--~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~---~----~~~---~~i~~~~~D 124 (659)
+.+.+.. .++ .+|||+|||+|..+..++..|. +|+++|+++.+.+.+++.. . ..+ .+++++++|
T Consensus 78 l~~al~l---~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D 153 (258)
T 2oyr_A 78 VAKAVGI---KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258)
T ss_dssp HHHHTTC---BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHhcc---cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence 4455543 345 8999999999999999999876 7999999997644332221 1 111 468999999
Q ss_pred cCCC-CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCe
Q 006149 125 MTSM-QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 172 (659)
Q Consensus 125 ~~~l-~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG 172 (659)
+.++ +...++||+|+....+..- . . ..++++..++|++.+
T Consensus 154 ~~~~L~~~~~~fDvV~lDP~y~~~-~-~------saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 154 SLTALTDITPRPQVVYLDPMFPHK-Q-K------SALVKKEMRVFQSLV 194 (258)
T ss_dssp HHHHSTTCSSCCSEEEECCCCCCC-C-C-----------HHHHHHHHHS
T ss_pred HHHHHHhCcccCCEEEEcCCCCCc-c-c------chHHHHHHHHHHHhh
Confidence 8874 3222479999987766542 1 1 134555556665543
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=8.4e-06 Score=83.64 Aligned_cols=147 Identities=12% Similarity=0.114 Sum_probs=86.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.++.+|||+||++|.++..+++. +...|+|+|+...+..... .......++.....++.-..+..+.+|+|++..+-+
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~-~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn 158 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPI-HMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES 158 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCC-CCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccc-cccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence 47889999999999999999975 6668999999753210000 000011234444433333345568999999977666
Q ss_pred ccCCcccchHHHHHHHHHHHhccccC-eEEEEEEcC--CchhhcchhhhhccCceEEEeeeCCCCCCCCCCccEEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSG-GKFVCLTLA--ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMV 218 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpG-G~lvi~~~~--~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~l~~f~~ 218 (659)
......+......+|.-+.++|+|| |.|++-.+. .+... .++..+...|..-...-| ++.....+.|++
T Consensus 159 -sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~-~ll~~lk~~F~~V~~~KP--aSR~~S~E~Y~V 230 (300)
T 3eld_A 159 -SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVI-EKLERLQLRFGGGIVRVP--FSRNSTHEMYYI 230 (300)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHH-HHHHHHHHHHCCEEECCT--TSCTTCCCEEEE
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHH-HHHHHHHHhCCcEEEEeC--CCCCCChHHeee
Confidence 3332212122234588889999999 999998876 44432 334444443333332333 333444555554
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.5e-06 Score=76.39 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=62.0
Q ss_pred CCCeEEEECCCcc-hHHHHHHH-cCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCC-CcccEEEecccc
Q 006149 68 PPPQILVPGCGNS-RLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMD-ETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G-~~s~~La~-~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~-~sFDvVi~~g~l 144 (659)
++.+|||+|||+| ..+..|++ .|+ +|+++|+++.+++ +++.|+++..... +.||+|.+..
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~--------------~v~dDiF~P~~~~Y~~~DLIYsir-- 97 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG--------------IVRDDITSPRMEIYRGAALIYSIR-- 97 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT--------------EECCCSSSCCHHHHTTEEEEEEES--
T ss_pred CCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc--------------eEEccCCCCcccccCCcCEEEEcC--
Confidence 4579999999999 69999997 787 9999999995543 8999999854321 4799997532
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
+.++ +...+-++.+. -|.-+++..++.+.
T Consensus 98 ---PP~E-----l~~~i~~lA~~--v~adliI~pL~~E~ 126 (153)
T 2k4m_A 98 ---PPAE-----IHSSLMRVADA--VGARLIIKPLTGED 126 (153)
T ss_dssp ---CCTT-----THHHHHHHHHH--HTCEEEEECBTTBC
T ss_pred ---CCHH-----HHHHHHHHHHH--cCCCEEEEcCCCCc
Confidence 2222 22333333332 36678888776544
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.87 E-value=9.3e-05 Score=85.51 Aligned_cols=135 Identities=13% Similarity=0.031 Sum_probs=88.1
Q ss_pred ccccchhHHHHHHHHh----hCCCCCCCCCeEEEECCCcchHHHHHHHcC----CCeEEEEcCCHHHHHHHHHHh--hc-
Q 006149 45 EWYAEWPQLRDPLISL----IGAPTSSPPPQILVPGCGNSRLSEHLYDAG----FHGITNVDFSKVVISDMLRRN--VR- 113 (659)
Q Consensus 45 ewy~~~~~l~~~l~~~----l~~~~~~~~~~ILDiGCG~G~~s~~La~~g----~~~VtgvD~S~~~i~~~~~~~--~~- 113 (659)
.-|.....+...+..+ +.. ...++.+|||+|||+|.+...++... ..+++|+|+++.+++.++.+. ..
T Consensus 295 GqFYTP~eLA~lMVeLA~ill~~-~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN 373 (878)
T 3s1s_A 295 GVVPTDIELGKVLSIISQHILGR-PLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP 373 (878)
T ss_dssp BSSSCCHHHHHHHHHHHHHHHCS-CCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred ceEcCCHHHHHHHHHHHhhhccc-cCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence 3344456777766666 321 12357899999999999999988762 247999999999988763222 11
Q ss_pred ---CC-CCcEEEEeecCCC-CCCCCcccEEEecccccccCCcccc----------------------hHHHHHHHHHHHh
Q 006149 114 ---DR-SDMRWRVMDMTSM-QFMDETFDVILDKGGLDALMEPELG----------------------HKLGNQYLSEVKR 166 (659)
Q Consensus 114 ---~~-~~i~~~~~D~~~l-~~~~~sFDvVi~~g~l~~l~~~~~~----------------------~~~~~~~l~ei~r 166 (659)
.+ ....+...|+... +...+.||+|+++..+......... ......++..+.+
T Consensus 374 ~LlhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~ 453 (878)
T 3s1s_A 374 QLVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTE 453 (878)
T ss_dssp TTCBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHH
T ss_pred hhhcCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHH
Confidence 11 2235556666653 2345789999998776321111100 0124457889999
Q ss_pred ccccCeEEEEEEcC
Q 006149 167 LLKSGGKFVCLTLA 180 (659)
Q Consensus 167 vLkpGG~lvi~~~~ 180 (659)
.|++||+++++...
T Consensus 454 lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 454 LVQDGTVISAIMPK 467 (878)
T ss_dssp HSCTTCEEEEEEET
T ss_pred hcCCCcEEEEEECh
Confidence 99999999998865
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.8e-05 Score=81.97 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=79.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc---------CCCCcEEEEeecCCCC----CCCCc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR---------DRSDMRWRVMDMTSMQ----FMDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~---------~~~~i~~~~~D~~~l~----~~~~s 134 (659)
++.+||-||.|.|..+.++.+.+..+|+.||+++.+++.+++.... ..++++++.+|....- -..++
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~ 284 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE 284 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence 4579999999999999999988667999999999999988765422 1146889999987641 13468
Q ss_pred ccEEEecccccccC-Cccc-chHH-HHHHHHHHHhccccCeEEEEEE
Q 006149 135 FDVILDKGGLDALM-EPEL-GHKL-GNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 135 FDvVi~~g~l~~l~-~~~~-~~~~-~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
||+|+.-.+-.... ++.. .... -+.+++.+++.|+|||+++.-.
T Consensus 285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 99999643211111 1110 0111 4678899999999999998754
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.77 E-value=4.2e-05 Score=81.47 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=83.6
Q ss_pred CCCeEEEECCCcchHHHHHHHc------------C-----CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC-
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA------------G-----FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS- 127 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~------------g-----~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~- 127 (659)
...+|+|+||++|..|..+... + .-+|+..|........+.+...... .+..|+.+....
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3468999999999888765443 1 1368899988877766654432200 134666665555
Q ss_pred --CCCCCCcccEEEecccccccCCcccc--------------------------hHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 128 --MQFMDETFDVILDKGGLDALMEPELG--------------------------HKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 128 --l~~~~~sFDvVi~~g~l~~l~~~~~~--------------------------~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
-.|+++++|+|++..+|||+...... ...+..+|+...+.|+|||++++..+
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 46899999999999999998753311 12367779999999999999999998
Q ss_pred CCch
Q 006149 180 AESH 183 (659)
Q Consensus 180 ~~~~ 183 (659)
+...
T Consensus 211 gr~~ 214 (359)
T 1m6e_X 211 GRRS 214 (359)
T ss_dssp ECSS
T ss_pred cCCC
Confidence 7544
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=6.7e-05 Score=80.00 Aligned_cols=114 Identities=19% Similarity=0.173 Sum_probs=83.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcC-------CCCcEEEEeecCCCC-CCCCcccE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD-------RSDMRWRVMDMTSMQ-FMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~-------~~~i~~~~~D~~~l~-~~~~sFDv 137 (659)
.++.+|||++||.|.=|..|+..+. +.|+++|+++.-+..+.+..... ..++.+.+.|...++ ...+.||.
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~ 226 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR 226 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence 6889999999999999999988753 57999999999888776655332 246888889988763 44678999
Q ss_pred EEe----cccccccC--Cccc----ch-------HHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILD----KGGLDALM--EPEL----GH-------KLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~----~g~l~~l~--~~~~----~~-------~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+. .|.-..+. +++. .. ..-.++|....++|||||+++-+|.+
T Consensus 227 VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 227 VLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp EEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred EEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 994 33200111 1110 00 11467899999999999999999876
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00028 Score=69.84 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc--CCCCcEEEEe-ecCCCCCCCCcccEEEecc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR--DRSDMRWRVM-DMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~--~~~~i~~~~~-D~~~l~~~~~sFDvVi~~g 142 (659)
.++.+|||+||++|.++...+.. |...|+|+|+-..--+. -+... ..+.++|.++ |+..++ ..++|+|+|--
T Consensus 77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~--P~~~~s~gwn~v~fk~gvDv~~~~--~~~~DtllcDI 152 (267)
T 3p8z_A 77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE--PVPMSTYGWNIVKLMSGKDVFYLP--PEKCDTLLCDI 152 (267)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC--CCCCCCTTTTSEEEECSCCGGGCC--CCCCSEEEECC
T ss_pred CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC--cchhhhcCcCceEEEeccceeecC--CccccEEEEec
Confidence 57889999999999999977766 66789999987621110 00000 1256899998 987765 36799999753
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch--hhcchhhhhccCceEEEeeeCC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH--VLGLLFPKFRFGWKMSVHAIPQ 205 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~--~~~~l~~~~~~~w~~~~~~i~~ 205 (659)
.= .-.++..+...--++|+-+.++|++ |-|+|-.+...+ +. +.++.++..|.-.....+.
T Consensus 153 ge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~-e~l~~lq~~fgg~lVR~P~ 214 (267)
T 3p8z_A 153 GE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVI-EHLERLQRKHGGMLVRNPL 214 (267)
T ss_dssp CC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHH-HHHHHHHHHHCCEEECCTT
T ss_pred CC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHH-HHHHHHHHHhCCEeEeCCC
Confidence 33 2233222222233488888999998 888887777555 33 3344444444444444443
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00019 Score=73.38 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=83.3
Q ss_pred CCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEe-ecCCCCCCCCcccEEEecc
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVM-DMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~-D~~~l~~~~~sFDvVi~~g 142 (659)
..++.+|||+||++|.++...+.. |...|+|+|+-..--+.= .....-+ ..+.+... |+..++. ..+|+|+|--
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDi 168 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDI 168 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEECC
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCCcceEEEeccCHhhCCC--CCCCEEEEEC
Confidence 357889999999999999977766 667899999876311000 0000001 23777776 8877753 6699999754
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccC-eEEEEEEcCC--chhhcchhhhhccCceEEEeeeC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSG-GKFVCLTLAE--SHVLGLLFPKFRFGWKMSVHAIP 204 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpG-G~lvi~~~~~--~~~~~~l~~~~~~~w~~~~~~i~ 204 (659)
. ..-+.+..+...--++|+-+.++|++| |-|+|-.+.. +.+. +.++.++..|.-.....+
T Consensus 169 g-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~-e~l~~lq~~fgg~lvr~P 231 (321)
T 3lkz_A 169 G-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVI-EKMELLQRRYGGGLVRNP 231 (321)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHH-HHHHHHHHHHCCEEECCT
T ss_pred c-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHH-HHHHHHHHHhCCEeEeCC
Confidence 4 444443322222334788888999999 8999877775 3333 233444444443444433
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00015 Score=77.05 Aligned_cols=99 Identities=10% Similarity=-0.021 Sum_probs=71.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.++||+||++|.+|..|++.|. .|++||+.+ |.... ...++++++++|+.....+.+.||+|+|-.+.+.
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~-----l~~~l-~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~p 282 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP-----MAQSL-MDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKP 282 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC-----CCHHH-HTTTCEEEECSCTTTCCCCSSCEEEEEECCSSCH
T ss_pred CCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh-----cChhh-ccCCCeEEEeCccccccCCCCCcCEEEEcCCCCh
Confidence 4789999999999999999999986 999999876 22222 2357899999999998777789999998554332
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
. .....+..|...+..++.++.+.+.
T Consensus 283 ----~----~~~~l~~~wl~~~~~~~aI~~lKL~ 308 (375)
T 4auk_A 283 ----A----KVAALMAQWLVNGWCRETIFNLKLP 308 (375)
T ss_dssp ----H----HHHHHHHHHHHTTSCSEEEEEEECC
T ss_pred ----H----HhHHHHHHHHhccccceEEEEEEec
Confidence 1 2334455555555555665555553
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.62 E-value=3.3e-05 Score=78.67 Aligned_cols=104 Identities=15% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-------CC------CeEEEEcCCH---HHHHHH-----------HHHhhc-------
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-------GF------HGITNVDFSK---VVISDM-----------LRRNVR------- 113 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-------g~------~~VtgvD~S~---~~i~~~-----------~~~~~~------- 113 (659)
+..+|||+|||+|..+..+++. +. .+++++|..+ ..+.++ .+....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 5679999999999988776542 21 3799999776 444432 222111
Q ss_pred --------CCCCcEEEEeecCC-CCC-CC---CcccEEEecccccccCCcccchHH-HHHHHHHHHhccccCeEEEE
Q 006149 114 --------DRSDMRWRVMDMTS-MQF-MD---ETFDVILDKGGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVC 176 (659)
Q Consensus 114 --------~~~~i~~~~~D~~~-l~~-~~---~sFDvVi~~g~l~~l~~~~~~~~~-~~~~l~ei~rvLkpGG~lvi 176 (659)
...+++++.+|+.+ ++. ++ ..||+|+.-+.--. ..++ . -..+|+.+.++|+|||+++.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~-~~p~----lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPA-KNPD----MWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTT-TCGG----GCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcc-cChh----hcCHHHHHHHHHHcCCCcEEEE
Confidence 11357788999877 332 22 27999996431111 0111 0 24799999999999999884
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00014 Score=74.54 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (659)
.+.+...+.+.+.. .++..+||.+||.|..+..+++.+ +.|+|+|.++.+++.+++ ... ++++++++|+.+++
T Consensus 7 ~pVLl~e~le~L~~---~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~--~rv~lv~~~f~~l~ 79 (285)
T 1wg8_A 7 VPVLYQEALDLLAV---RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL--PGLTVVQGNFRHLK 79 (285)
T ss_dssp CCTTHHHHHHHHTC---CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC--TTEEEEESCGGGHH
T ss_pred hhHHHHHHHHhhCC---CCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc--CCEEEEECCcchHH
Confidence 34555666677764 578899999999999999999984 499999999999998876 533 68999999998873
Q ss_pred -----CCCCcccEEEe
Q 006149 130 -----FMDETFDVILD 140 (659)
Q Consensus 130 -----~~~~sFDvVi~ 140 (659)
...++||.|+.
T Consensus 80 ~~L~~~g~~~vDgIL~ 95 (285)
T 1wg8_A 80 RHLAALGVERVDGILA 95 (285)
T ss_dssp HHHHHTTCSCEEEEEE
T ss_pred HHHHHcCCCCcCEEEe
Confidence 12256888774
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=7.7e-05 Score=74.60 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=60.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC------------------CCCeeEE--e---
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ------------------DKSLKVF--N--- 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~------------------d~rl~vf--~--- 597 (659)
...|||-||.|.|.++.++.++.|. ++++||++|.|++.|++++.-.. +...|+. +
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~ 138 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeee
Confidence 4579999999999999999998876 89999999999999999873221 1112221 1
Q ss_pred ------cc-cchhHHHHHHHhhccCCCCcEEEec
Q 006149 598 ------HL-FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 598 ------~l-~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
|+ ....+++.+.++| +|+|++..-
T Consensus 139 ~~~~~~~~~~~~~~~~e~~rvL---kPGG~l~f~ 169 (236)
T 3orh_A 139 LSEETWHTHQFNFIKNHAFRLL---KPGGVLTYC 169 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHE---EEEEEEEEC
T ss_pred cccchhhhcchhhhhhhhhhee---CCCCEEEEE
Confidence 11 1346778899999 999999763
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00017 Score=72.43 Aligned_cols=109 Identities=16% Similarity=0.111 Sum_probs=66.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCc---EEEEe-ecCCCCCCCCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDM---RWRVM-DMTSMQFMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i---~~~~~-D~~~l~~~~~sFDvVi~~ 141 (659)
+|+.+|||+||+.|.++...++. +...|.|.++.... . + .-.....+++ .+.++ |+.+++ ...+|+|+|-
T Consensus 72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~-~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLSD 146 (269)
T 2px2_A 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-E-EPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLLCD 146 (269)
T ss_dssp CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-C-CCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEEEC
T ss_pred CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-c-CCCcccCCCceEEEeeccCCccCCC--CCCCCEEEeC
Confidence 68999999999999999999886 22233444443210 0 0 0000000234 44446 998854 5689999986
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCe-EEEEEEcCC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLAE 181 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG-~lvi~~~~~ 181 (659)
.+-. ......+......+|.-+.++|+||| -|++=.+..
T Consensus 147 MAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 147 IGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp CCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 5443 22222111112227888889999999 999988763
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00032 Score=72.19 Aligned_cols=104 Identities=12% Similarity=0.018 Sum_probs=74.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc----C--CCeEEEEcCCHH--------------------------HHHHHHHHhhcCC
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA----G--FHGITNVDFSKV--------------------------VISDMLRRNVRDR 115 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~----g--~~~VtgvD~S~~--------------------------~i~~~~~~~~~~~ 115 (659)
.+..|||+||..|..+..++.. + .++|+++|..+. .++.+++.....+
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 4679999999999999887653 1 468999996421 2444545444332
Q ss_pred ---CCcEEEEeecCCC-C-CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 116 ---SDMRWRVMDMTSM-Q-FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 116 ---~~i~~~~~D~~~l-~-~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.+++++.+|+.+. + +++++||+|+.-+-.+ .....+|+.+.+.|+|||++++-++.
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y---------~~~~~~Le~~~p~L~pGGiIv~DD~~ 246 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY---------ESTWDTLTNLYPKVSVGGYVIVDDYM 246 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH---------HHHHHHHHHHGGGEEEEEEEEESSCT
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc---------ccHHHHHHHHHhhcCCCEEEEEcCCC
Confidence 6799999998763 2 4457899998544221 11457899999999999999998874
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0043 Score=69.52 Aligned_cols=176 Identities=11% Similarity=0.108 Sum_probs=106.0
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc----C----------CCeEEEEcCCHHHHHHHHHHhh
Q 006149 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G----------FHGITNVDFSKVVISDMLRRNV 112 (659)
Q Consensus 47 y~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~----g----------~~~VtgvD~S~~~i~~~~~~~~ 112 (659)
|.....+...+.+++.. .++.+|+|.+||+|.+....++. . ...++|+|+.+.+...++-...
T Consensus 199 fyTP~~Vv~lmv~l~~p---~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~ 275 (530)
T 3ufb_A 199 FYTPRPVVRFMVEVMDP---QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL 275 (530)
T ss_dssp CCCCHHHHHHHHHHHCC---CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred ECCcHHHHHHHHHhhcc---CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence 44556788888888875 67789999999999998766542 1 1369999999988775543322
Q ss_pred cC-CCCcEEEEeecCCCCC----CCCcccEEEecccccccCCcc------c---chHHHHHHHHHHHhccc-------cC
Q 006149 113 RD-RSDMRWRVMDMTSMQF----MDETFDVILDKGGLDALMEPE------L---GHKLGNQYLSEVKRLLK-------SG 171 (659)
Q Consensus 113 ~~-~~~i~~~~~D~~~l~~----~~~sFDvVi~~g~l~~l~~~~------~---~~~~~~~~l~ei~rvLk-------pG 171 (659)
-+ .....+.++|....+. +...||+|+++..+..-.... . ....--.++..+.+.|| +|
T Consensus 276 lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~g 355 (530)
T 3ufb_A 276 LHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNG 355 (530)
T ss_dssp HHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSC
T ss_pred hcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCC
Confidence 22 2345667788766543 235799999987764211100 0 00012346677777776 79
Q ss_pred eEEEEEEcCC----chhhcchhhhh-ccCceEEEeeeCCCC-CCCCCCccEEEEEEecCC
Q 006149 172 GKFVCLTLAE----SHVLGLLFPKF-RFGWKMSVHAIPQKS-SSEPSLQTFMVVADKENS 225 (659)
Q Consensus 172 G~lvi~~~~~----~~~~~~l~~~~-~~~w~~~~~~i~~~~-~~~~~l~~f~~v~~k~~~ 225 (659)
|++.++.... ......+-+.+ ..++...+-.++..- .+....+..+++.+|.+.
T Consensus 356 Gr~avVlP~g~Lf~~~~~~~iRk~Lle~~~l~aII~LP~~~F~~~tgi~t~Il~~~K~~~ 415 (530)
T 3ufb_A 356 GRAAVVVPNGTLFSDGISARIKEELLKNFNLHTIVRLPEGVFAPYTDIAGNLLFFDRSGP 415 (530)
T ss_dssp CEEEEEEEHHHHHCCTHHHHHHHHHHHHSEEEEEEECCTTTTTTTCCCCEEEEEEESSSC
T ss_pred ceEEEEecchhhhccchHHHHHHHHhhcCEEEEEEECCcccCcCCCCCcEEEEEEECCCC
Confidence 9998887531 11111111222 224445565665321 122456668888887654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00041 Score=71.81 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=61.8
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCCCCCe---------------eEE-e-cc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSL---------------KVF-N-HL 599 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl---------------~vf-~-~l 599 (659)
..+.+||.||.|.|.++..+....++.+|++||+||.+++.|++.+ |+ +++ |+. . .+
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl---~~v~~v~gDa~~l~d~~FDvV~~~a~ 197 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV---DGVNVITGDETVIDGLEFDVLMVAAL 197 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC---CSEEEEESCGGGGGGCCCSEEEECTT
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC---CCeEEEECchhhCCCCCcCEEEECCC
Confidence 5678999999997777666556667899999999999999999986 55 233 222 1 12
Q ss_pred c--chhHHHHHHHhhccCCCCcEEEecCc
Q 006149 600 F--CLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 600 ~--~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
. ...+++.+.++| +|+|.++.+..
T Consensus 198 ~~d~~~~l~el~r~L---kPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 AEPKRRVFRNIHRYV---DTETRIIYRTY 223 (298)
T ss_dssp CSCHHHHHHHHHHHC---CTTCEEEEEEC
T ss_pred ccCHHHHHHHHHHHc---CCCcEEEEEcC
Confidence 1 237899999999 99999887653
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0015 Score=64.27 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=63.8
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC--------------CCCeeEE------ecc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ--------------DKSLKVF------NHL 599 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~--------------d~rl~vf------~~l 599 (659)
..+.+||-||.|.|.+...+...+|..++++||++|.+++.|++.+.-.. ....|+. .++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL 122 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGS
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccC
Confidence 45689999999999999999999999999999999999999999864211 1223333 334
Q ss_pred cch---hHHHHHHHhhccCCCCcEEEe
Q 006149 600 FCL---QLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 600 ~~~---~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
... .+.+.++++| +|+|.+..
T Consensus 123 ~~~~~~~~l~~~~~~L---kpgG~l~~ 146 (234)
T 3dtn_A 123 EDEDKKELYKRSYSIL---KESGIFIN 146 (234)
T ss_dssp CHHHHHHHHHHHHHHE---EEEEEEEE
T ss_pred CHHHHHHHHHHHHHhc---CCCcEEEE
Confidence 322 4889999999 99998875
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0015 Score=61.14 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=63.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------C---------CCeeEE---ecc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------D---------KSLKVF---NHL 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------d---------~rl~vf---~~l 599 (659)
...+||-||.|.|.+...+...+|..++++||++|.+++.|++.+ +++. | +..|+. ..+
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~ 104 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGL 104 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-T
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcc
Confidence 346999999999999999999999999999999999999999764 3320 0 222322 112
Q ss_pred cchhHHHHHHHhhccCCCCcEEEecCc
Q 006149 600 FCLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
....+.+.+.++| +++|.++...+
T Consensus 105 ~~~~~l~~~~~~L---~~gG~l~~~~~ 128 (178)
T 3hm2_A 105 TAPGVFAAAWKRL---PVGGRLVANAV 128 (178)
T ss_dssp TCTTHHHHHHHTC---CTTCEEEEEEC
T ss_pred cHHHHHHHHHHhc---CCCCEEEEEee
Confidence 2356889999999 99998887653
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00086 Score=66.91 Aligned_cols=81 Identities=12% Similarity=0.236 Sum_probs=63.4
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeE--------------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKV-------------------- 595 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~v-------------------- 595 (659)
..+++||-||.|.|..+.++...+| +.++++||+||.++++|+++| |+. +|+++
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~--~~i~~~~gda~~~l~~l~~~~~~~~ 146 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE--HKINFIESDAMLALDNLLQGQESEG 146 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG--GGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHHhccCCCC
Confidence 3567999999999999999999887 789999999999999999998 542 23321
Q ss_pred -Eecc-------cchhHHHHHHHhhccCCCCcEEEe-cC
Q 006149 596 -FNHL-------FCLQLEEDVNLVLFGLSSESCIKD-NS 625 (659)
Q Consensus 596 -f~~l-------~~~~f~~~~~~~Lf~~~~~g~~~~-n~ 625 (659)
|+-+ ....+++.+.++| +++|+++. |+
T Consensus 147 ~fD~I~~d~~~~~~~~~l~~~~~~L---~pGG~lv~d~~ 182 (237)
T 3c3y_A 147 SYDFGFVDADKPNYIKYHERLMKLV---KVGGIVAYDNT 182 (237)
T ss_dssp CEEEEEECSCGGGHHHHHHHHHHHE---EEEEEEEEECT
T ss_pred CcCEEEECCchHHHHHHHHHHHHhc---CCCeEEEEecC
Confidence 2111 2356788899999 99998876 54
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0034 Score=64.11 Aligned_cols=103 Identities=14% Similarity=0.063 Sum_probs=68.4
Q ss_pred CCCCeEEEECC------CcchHHHHHHHcCC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEE
Q 006149 67 SPPPQILVPGC------GNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVI 138 (659)
Q Consensus 67 ~~~~~ILDiGC------G~G~~s~~La~~g~--~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvV 138 (659)
+-+.+|||+|+ -+|.. .+.+.+. +.|+++|+.+-. .... .++++|...... .++||+|
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~----------sda~-~~IqGD~~~~~~-~~k~DLV 173 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV----------SDAD-STLIGDCATVHT-ANKWDLI 173 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB----------CSSS-EEEESCGGGEEE-SSCEEEE
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc----------cCCC-eEEEcccccccc-CCCCCEE
Confidence 35789999996 66663 2323222 389999998821 1122 559999876543 4889999
Q ss_pred EecccccccC--Cccc--chHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 139 LDKGGLDALM--EPEL--GHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 139 i~~g~l~~l~--~~~~--~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
++-.+-.... +.+. .....+.++.-+.++|+|||.|++=.+..++
T Consensus 174 ISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 174 ISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp EECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred EecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 9743322111 1111 1225889999999999999999998886655
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0025 Score=61.41 Aligned_cols=82 Identities=20% Similarity=0.106 Sum_probs=63.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC--------------CCCCeeEE-ecc---
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT--------------QDKSLKVF-NHL--- 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~d~rl~vf-~~l--- 599 (659)
...+||-||.|.|.+...+....|..++++||++|.+++.|++.+ |+. ..+..|+. ...
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~ 119 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGG 119 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCTT
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCCc
Confidence 456899999999999999999999899999999999999999865 331 00122222 111
Q ss_pred cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
....+.+.+.++| +++|.++...
T Consensus 120 ~~~~~l~~~~~~L---kpgG~l~~~~ 142 (204)
T 3e05_A 120 MLEEIIDAVDRRL---KSEGVIVLNA 142 (204)
T ss_dssp CHHHHHHHHHHHC---CTTCEEEEEE
T ss_pred CHHHHHHHHHHhc---CCCeEEEEEe
Confidence 2457888999999 9999888765
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0031 Score=61.32 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=63.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC----------------------CCCeeEE--
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ----------------------DKSLKVF-- 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~----------------------d~rl~vf-- 596 (659)
.+.+||-||.|.|.+...+....|..++++||+++.+++.|++.+.... +...|+.
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 108 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV 108 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence 4579999999999999999998888899999999999999998863211 0122322
Q ss_pred ----ecccc---hhHHHHHHHhhccCCCCcEEEecC
Q 006149 597 ----NHLFC---LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 597 ----~~l~~---~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.|+.. ..+.+.+.++| +|+|+++...
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~L---kpgG~li~~~ 141 (217)
T 3jwh_A 109 IEVIEHLDLSRLGAFERVLFEFA---QPKIVIVTTP 141 (217)
T ss_dssp ESCGGGCCHHHHHHHHHHHHTTT---CCSEEEEEEE
T ss_pred HHHHHcCCHHHHHHHHHHHHHHc---CCCEEEEEcc
Confidence 34432 57788899999 9999776644
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0011 Score=68.59 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=48.8
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD 117 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~ 117 (659)
.+...+.+... .+++.|||++||+|..+..++..|. +++|+|+++.+++.++++.....+.
T Consensus 223 ~l~~~~i~~~~----~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~~~~ 283 (297)
T 2zig_A 223 ELAERLVRMFS----FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFAREVPG 283 (297)
T ss_dssp HHHHHHHHHHC----CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHhccc
Confidence 44555555554 3788999999999999999998886 9999999999999998877554333
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.002 Score=62.93 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=63.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeE-------------------Ee
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKV-------------------FN 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~v-------------------f~ 597 (659)
.+.+||-||.|.|..+.++...+| +.++++||++|.+++.|++++ |+. +++++ |+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN--DRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 457999999999999999999988 789999999999999999987 443 23322 22
Q ss_pred cc-------cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 HL-------FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l-------~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
-+ ....+++.+.++| +++|+++.+.
T Consensus 136 ~v~~d~~~~~~~~~l~~~~~~L---~pgG~lv~~~ 167 (223)
T 3duw_A 136 FIFIDADKQNNPAYFEWALKLS---RPGTVIIGDN 167 (223)
T ss_dssp EEEECSCGGGHHHHHHHHHHTC---CTTCEEEEES
T ss_pred EEEEcCCcHHHHHHHHHHHHhc---CCCcEEEEeC
Confidence 11 2356788899999 9999887743
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0016 Score=65.41 Aligned_cols=79 Identities=13% Similarity=0.160 Sum_probs=62.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeE-----------------Eecc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKV-----------------FNHL 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~v-----------------f~~l 599 (659)
.+.+||-||.|.|....++...+| ..+|++||++|.+++.|++.+ |+. +++++ |+-+
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~--~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD--QRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 457999999999999999999988 789999999999999999998 543 23321 1111
Q ss_pred -------cchhHHHHHHHhhccCCCCcEEEec
Q 006149 600 -------FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 600 -------~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
....+++.+.++| +|+|+++.+
T Consensus 141 ~~d~~~~~~~~~l~~~~~~L---kpGG~lv~~ 169 (248)
T 3tfw_A 141 FIDADKPNNPHYLRWALRYS---RPGTLIIGD 169 (248)
T ss_dssp EECSCGGGHHHHHHHHHHTC---CTTCEEEEE
T ss_pred EECCchHHHHHHHHHHHHhc---CCCeEEEEe
Confidence 2346888999999 999988763
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00079 Score=66.61 Aligned_cols=79 Identities=13% Similarity=0.232 Sum_probs=61.3
Q ss_pred CeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeE----------------Eecc---
Q 006149 543 VKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKV----------------FNHL--- 599 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~v----------------f~~l--- 599 (659)
.+||-||.|.|..+.++...+| +.+|++||+||.+++.|+++| |+. ++|+++ |+-+
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS-PSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC-GGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 3999999999999999998875 789999999999999999998 332 123322 2111
Q ss_pred ----cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 ----FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ----~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
....+++.+.++| +|+|+++.+.
T Consensus 137 ~~~~~~~~~l~~~~~~L---kpGG~lv~dn 163 (221)
T 3dr5_A 137 VSPMDLKALVDAAWPLL---RRGGALVLAD 163 (221)
T ss_dssp CCTTTHHHHHHHHHHHE---EEEEEEEETT
T ss_pred CcHHHHHHHHHHHHHHc---CCCcEEEEeC
Confidence 1346888999999 9999888744
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0022 Score=64.46 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=61.8
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeE--------------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKV-------------------- 595 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~v-------------------- 595 (659)
..+.+||-||.|.|....++...+| +.++++||+|+.++++|+++| |+. +++++
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~--~~i~~~~gda~~~l~~l~~~~~~~~ 155 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD--HKIDFREGPALPVLDEMIKDEKNHG 155 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG--GGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CCeEEEECCHHHHHHHHHhccCCCC
Confidence 3567999999999999999999987 789999999999999999987 431 22211
Q ss_pred -Eecc-------cchhHHHHHHHhhccCCCCcEEEe
Q 006149 596 -FNHL-------FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 596 -f~~l-------~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
|+-+ ....+++.+.++| +++|+++.
T Consensus 156 ~fD~V~~d~~~~~~~~~l~~~~~~L---kpGG~lv~ 188 (247)
T 1sui_A 156 SYDFIFVDADKDNYLNYHKRLIDLV---KVGGVIGY 188 (247)
T ss_dssp CBSEEEECSCSTTHHHHHHHHHHHB---CTTCCEEE
T ss_pred CEEEEEEcCchHHHHHHHHHHHHhC---CCCeEEEE
Confidence 1111 2356788899999 99998876
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0026 Score=61.86 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=62.7
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC---C-------------------CCCCeeEE-
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF---T-------------------QDKSLKVF- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl---~-------------------~d~rl~vf- 596 (659)
..+.+||-||.|.|.+...+....|..++++||+++.+++.|++.+.. + .+...|+.
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 345799999999999999999998888999999999999999987631 1 01123332
Q ss_pred -----ecccc---hhHHHHHHHhhccCCCCcEEEe
Q 006149 597 -----NHLFC---LQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 -----~~l~~---~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.|+.. ..+.+.+.++| +|+|+++.
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~L---kpgG~~i~ 139 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFT---RPQTVIVS 139 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTT---CCSEEEEE
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhh---CCCEEEEE
Confidence 44532 47888899999 99997765
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.004 Score=63.18 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=58.7
Q ss_pred CCeEEEEccCcchHHHHHHhhC--CCccEEEEecChhHHHHHHhhcCC-CCCCCe---------------eEE------e
Q 006149 542 SVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYFGF-TQDKSL---------------KVF------N 597 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~--p~~~i~~VEiDp~V~~vA~~~Fgl-~~d~rl---------------~vf------~ 597 (659)
..+||=||.|.|.+...|.+.+ |+++|++||++|.+++.||+.+.- ....++ |+. .
T Consensus 71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~ 150 (261)
T 4gek_A 71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 150 (261)
T ss_dssp TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGG
T ss_pred CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeeee
Confidence 4689999999999999998875 578999999999999999987521 111222 222 2
Q ss_pred ccc---chhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HLF---CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l~---~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
++- -..+++.++++| +|+|.++.
T Consensus 151 ~~~~~~~~~~l~~i~~~L---kpGG~lii 176 (261)
T 4gek_A 151 FLEPSERQALLDKIYQGL---NPGGALVL 176 (261)
T ss_dssp GSCHHHHHHHHHHHHHHE---EEEEEEEE
T ss_pred ecCchhHhHHHHHHHHHc---CCCcEEEE
Confidence 221 134688899999 99997765
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0018 Score=65.51 Aligned_cols=81 Identities=21% Similarity=0.265 Sum_probs=63.9
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC--------------CCCCeeEE------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT--------------QDKSLKVF------ 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~d~rl~vf------ 596 (659)
+...+||-||.|.|.+...+...+|..++++||++|.+++.|++.+ +++ ++...|+.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL 115 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence 4557999999999999999999999999999999999999999875 221 12233433
Q ss_pred ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++ ....+.+.++++| +|+|.+..
T Consensus 116 ~~~~~~~~~l~~~~~~L---~pgG~l~~ 140 (276)
T 3mgg_A 116 EHLQSPEEALKSLKKVL---KPGGTITV 140 (276)
T ss_dssp GGCSCHHHHHHHHHHHE---EEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHc---CCCcEEEE
Confidence 233 2357889999999 99998876
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.001 Score=63.94 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=32.6
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
..+.+||-||.|.|.+...+...+|..++++||++|.+++.|++.+.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~ 75 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAE 75 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999998764
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0029 Score=62.65 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=61.9
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC-----------------CCCeeEE--ec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ-----------------DKSLKVF--NH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~-----------------d~rl~vf--~~ 598 (659)
.+.+||-||.|.|.+..++...+|..++++||++|.+++.|++.+ |+.+ +...|+. +.
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 457999999999999999999888899999999999999999987 4321 1122222 01
Q ss_pred --ccchhHHHHHHHhhccCCCCcEEEe
Q 006149 599 --LFCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 599 --l~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
-....+++.+.++| +|+|+++.
T Consensus 151 ~~~~~~~~l~~~~~~L---kpgG~lv~ 174 (232)
T 3ntv_A 151 AKAQSKKFFEIYTPLL---KHQGLVIT 174 (232)
T ss_dssp TSSSHHHHHHHHGGGE---EEEEEEEE
T ss_pred cHHHHHHHHHHHHHhc---CCCeEEEE
Confidence 12356788899999 99998877
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0047 Score=65.41 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=61.4
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCee---------------EE--ecc---
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK---------------VF--NHL--- 599 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~---------------vf--~~l--- 599 (659)
....+|+=||+|.|.+...|.+.+|++++++.|+ |.|++.|+++......+|++ ++ .++
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~ 256 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHD 256 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGG
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeeccc
Confidence 3456899999999999999999999999999998 89999999998655555662 22 111
Q ss_pred ----cchhHHHHHHHhhccCCCCcEEEe
Q 006149 600 ----FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 600 ----~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
......+.|+++| +|+|.+.+
T Consensus 257 ~~d~~~~~iL~~~~~al---~pgg~lli 281 (353)
T 4a6d_A 257 WADGKCSHLLERIYHTC---KPGGGILV 281 (353)
T ss_dssp SCHHHHHHHHHHHHHHC---CTTCEEEE
T ss_pred CCHHHHHHHHHHHHhhC---CCCCEEEE
Confidence 1246678899999 99995443
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0025 Score=65.49 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=41.9
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
...+||-||.|.|.+...|...++..+|++||||+.+++.|++..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~ 90 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNI 90 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHH
Confidence 467999999999999999999998889999999999999999864
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0036 Score=62.11 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=41.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+.+||-||.|.|.+..++...+| ..++++||+||.+++.|++.+
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~ 105 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYW 105 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence 357999999999999999999987 689999999999999999986
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0041 Score=61.28 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=61.9
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------------------CCCeeEE-e-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------------------DKSLKVF-N- 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------------------d~rl~vf-~- 597 (659)
.+.+||-||.|.|.+...+...+|..++++||++|..++.|++.+ |+.. +...|+. .
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 356999999999999999999999889999999999999999986 4321 1122222 1
Q ss_pred cc--cchhHHHHHHHhhccCCCCcEEEec
Q 006149 598 HL--FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 598 ~l--~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
.. ....+++.+.++| +++|.++..
T Consensus 134 ~~~~~~~~~l~~~~~~L---~pgG~lv~~ 159 (233)
T 2gpy_A 134 AAKGQYRRFFDMYSPMV---RPGGLILSD 159 (233)
T ss_dssp GGGSCHHHHHHHHGGGE---EEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHc---CCCeEEEEE
Confidence 11 1257778888999 999988764
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0093 Score=57.78 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=59.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC--CC----------CCCCeeEE------ecccc-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG--FT----------QDKSLKVF------NHLFC- 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg--l~----------~d~rl~vf------~~l~~- 601 (659)
...+||-||.|.|.+...+... +.++++||+++.+++.|++.+. +. .....|+. .|+-.
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 122 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLTDD 122 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEEESCGGGSCHH
T ss_pred CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEECcchhcCChH
Confidence 4579999999999999999887 4699999999999999999875 10 01223332 33332
Q ss_pred --hhHHHHHHHhhccCCCCcEEEec
Q 006149 602 --LQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 602 --~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
..+.+.+.++| +|+|.+...
T Consensus 123 ~~~~~l~~~~~~L---kpgG~l~i~ 144 (220)
T 3hnr_A 123 EKNVAIAKYSQLL---NKGGKIVFA 144 (220)
T ss_dssp HHHHHHHHHHHHS---CTTCEEEEE
T ss_pred HHHHHHHHHHHhc---CCCCEEEEE
Confidence 23888999999 999988764
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0035 Score=63.08 Aligned_cols=82 Identities=13% Similarity=0.273 Sum_probs=64.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-----------CC-CCCCeeEEecccchhHHHHH
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----------FT-QDKSLKVFNHLFCLQLEEDV 608 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-----------l~-~d~rl~vf~~l~~~~f~~~~ 608 (659)
...+||.||.|.|.+...+...+|..++++||+++.+++.|++.+. ++ .+...|+.-..+...+.+.+
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~l~~~ 164 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCKAEEL 164 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCCHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChhhHHHH
Confidence 4579999999999999999998888899999999999999998652 11 12234544334556788999
Q ss_pred HHhhccCCCCcEEEecC
Q 006149 609 NLVLFGLSSESCIKDNS 625 (659)
Q Consensus 609 ~~~Lf~~~~~g~~~~n~ 625 (659)
.++| +|+|.++...
T Consensus 165 ~~~L---~pgG~l~~~~ 178 (269)
T 1p91_A 165 ARVV---KPGGWVITAT 178 (269)
T ss_dssp HHHE---EEEEEEEEEE
T ss_pred HHhc---CCCcEEEEEE
Confidence 9999 9999776643
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0038 Score=62.13 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=64.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-----------CCCCCCeeEE------ecc-cc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----------FTQDKSLKVF------NHL-FC 601 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-----------l~~d~rl~vf------~~l-~~ 601 (659)
..+.+||-||.|.|.+...+...+|..++++||+++.+++.|++... ++.+...|+. .++ ..
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 111 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYANAVFQWVPDH 111 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEESCGGGSTTH
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEeCchhhCCCH
Confidence 34579999999999999999999888999999999999999987631 1122344543 233 23
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+...+.++| +|+|.+....
T Consensus 112 ~~~l~~~~~~L---~pgG~l~~~~ 132 (259)
T 2p35_A 112 LAVLSQLMDQL---ESGGVLAVQM 132 (259)
T ss_dssp HHHHHHHGGGE---EEEEEEEEEE
T ss_pred HHHHHHHHHhc---CCCeEEEEEe
Confidence 66788899999 9999887754
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0011 Score=66.37 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=61.9
Q ss_pred CCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeE--------------------E
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKV--------------------F 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~v--------------------f 596 (659)
.+.+||-||.|.|..+.++...+| +.+|++||++|.++++|++.+ |+. +++++ |
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~--~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE--HKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT--TTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 457999999999999999999886 789999999999999999998 543 23321 2
Q ss_pred ecc-------cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHL-------FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l-------~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+-+ ....+++.+.++| +|+|+++.
T Consensus 138 D~V~~d~~~~~~~~~l~~~~~~L---kpGG~lv~ 168 (242)
T 3r3h_A 138 DFIFIDADKTNYLNYYELALKLV---TPKGLIAI 168 (242)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHE---EEEEEEEE
T ss_pred eEEEEcCChHHhHHHHHHHHHhc---CCCeEEEE
Confidence 111 2456788899999 99998876
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0021 Score=64.74 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=64.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC---------------CCCeeEE-----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ---------------DKSLKVF----- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~---------------d~rl~vf----- 596 (659)
..+.+||-||.|.|.+...+... +..++++||++|.+++.|++.+ |+++ +...|+.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence 44579999999999999999988 7789999999999999999875 3321 2233433
Q ss_pred -ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 597 -NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 597 -~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.++....+.+.+.++| +|+|.++...
T Consensus 124 ~~~~~~~~~l~~~~~~L---kpgG~l~~~~ 150 (267)
T 3kkz_A 124 IYNIGFERGLNEWRKYL---KKGGYLAVSE 150 (267)
T ss_dssp GGGTCHHHHHHHHGGGE---EEEEEEEEEE
T ss_pred ceecCHHHHHHHHHHHc---CCCCEEEEEE
Confidence 3455567888999999 9999887643
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0046 Score=60.57 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=60.9
Q ss_pred CCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeE--------------------E
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKV--------------------F 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~v--------------------f 596 (659)
.+.+||-||.|.|.++..+.+.+| ..++++||++|.+++.|++.| |+. +++++ |
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~--~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE--HKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC--CeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 457999999999999999999887 789999999999999999987 442 22211 2
Q ss_pred ecc-------cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHL-------FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l-------~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+-+ ....+++.+.++| +++|+++.
T Consensus 147 D~v~~d~~~~~~~~~l~~~~~~L---~pgG~lv~ 177 (229)
T 2avd_A 147 DVAVVDADKENCSAYYERCLQLL---RPGGILAV 177 (229)
T ss_dssp EEEEECSCSTTHHHHHHHHHHHE---EEEEEEEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHc---CCCeEEEE
Confidence 111 1246788888999 99998876
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0066 Score=58.99 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=62.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC----------------CCCCeeEE-ec--
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT----------------QDKSLKVF-NH-- 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~----------------~d~rl~vf-~~-- 598 (659)
...+||-||.|.|.+...+...+|+.++++||+++.+++.|++.+ |+. .+..+|+. ..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 346899999999999999999999999999999999999998864 321 01122322 11
Q ss_pred ------------ccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 ------------LFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 ------------l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+....+.+.+.++| +++|++...+
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~L---kpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRIL---PENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHS---CTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHc---CCCcEEEEEe
Confidence 12257999999999 9999887755
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0032 Score=61.55 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=62.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeE--------------------E
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKV--------------------F 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~v--------------------f 596 (659)
.+.+||-||.|.|..+.++...+| ..++++||+++.+++.|++.+ |+. +++++ |
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS--DKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CceEEEeCCHHHHHHHhhhccCCCCc
Confidence 457999999999999999999887 789999999999999999987 443 22211 2
Q ss_pred ecc-------cchhHHHHHHHhhccCCCCcEEEec
Q 006149 597 NHL-------FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 597 ~~l-------~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
+-+ ....+++.+.++| +++|+++.+
T Consensus 142 D~v~~~~~~~~~~~~l~~~~~~L---~pgG~lv~~ 173 (225)
T 3tr6_A 142 DLIYIDADKANTDLYYEESLKLL---REGGLIAVD 173 (225)
T ss_dssp EEEEECSCGGGHHHHHHHHHHHE---EEEEEEEEE
T ss_pred cEEEECCCHHHHHHHHHHHHHhc---CCCcEEEEe
Confidence 111 2456788899999 999988763
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0062 Score=63.60 Aligned_cols=80 Identities=14% Similarity=0.036 Sum_probs=61.6
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------------CC-CeeEE------e
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------------DK-SLKVF------N 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------------d~-rl~vf------~ 597 (659)
....+||-||.|.|.+...+.+.+|..+++++|+ |.+++.|++.+ ++.+ -+ ..|++ .
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh 246 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLH 246 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGG
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhc
Confidence 3457999999999999999999999999999999 99999999875 2210 01 33443 1
Q ss_pred cccc---hhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HLFC---LQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l~~---~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
++-. ..+.+.++++| +|+|.+..
T Consensus 247 ~~~~~~~~~~l~~~~~~L---~pgG~l~i 272 (332)
T 3i53_A 247 DWDDLSAVAILRRCAEAA---GSGGVVLV 272 (332)
T ss_dssp GSCHHHHHHHHHHHHHHH---TTTCEEEE
T ss_pred cCCHHHHHHHHHHHHHhc---CCCCEEEE
Confidence 2222 57888999999 99997755
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.015 Score=56.35 Aligned_cols=81 Identities=12% Similarity=-0.005 Sum_probs=60.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCCC---------------CCeeEE--eccc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQD---------------KSLKVF--NHLF 600 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~d---------------~rl~vf--~~l~ 600 (659)
...+||-||.|.|.+...+... ..+|++||++|.+++.|++.+ |++.. +..|+. ..-.
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~ 132 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG 132 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred CCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence 4468999999999999999887 579999999999999999874 44311 112221 1112
Q ss_pred chhHHHHHHHhhccCCCCcEEEecCc
Q 006149 601 CLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 601 ~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
..++.+.+.++| +++|.++....
T Consensus 133 ~~~~l~~~~~~L---kpgG~lv~~~~ 155 (204)
T 3njr_A 133 SQALYDRLWEWL---APGTRIVANAV 155 (204)
T ss_dssp CHHHHHHHHHHS---CTTCEEEEEEC
T ss_pred cHHHHHHHHHhc---CCCcEEEEEec
Confidence 333889999999 99998887663
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0021 Score=65.21 Aligned_cols=79 Identities=16% Similarity=0.082 Sum_probs=61.7
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-----------CCCCeeEE------ecccch
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----------QDKSLKVF------NHLFCL 602 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-----------~d~rl~vf------~~l~~~ 602 (659)
+...+||=||.|.|.++..|..++ .+|++||+++.+++.|+++-++. ++...|+. .++-..
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~ 115 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD 115 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH
Confidence 445789999999999999999887 47999999999999998763221 12334433 344567
Q ss_pred hHHHHHHHhhccCCCCcEEEe
Q 006149 603 QLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++..++++| +|+|+++.
T Consensus 116 ~~~~e~~rvL---kpgG~l~~ 133 (257)
T 4hg2_A 116 RFWAELRRVA---RPGAVFAA 133 (257)
T ss_dssp HHHHHHHHHE---EEEEEEEE
T ss_pred HHHHHHHHHc---CCCCEEEE
Confidence 8999999999 99998865
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.005 Score=61.39 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=62.0
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC---------------CCCCeeEE------ec
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---------------QDKSLKVF------NH 598 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~---------------~d~rl~vf------~~ 598 (659)
....+||-||.|.|.+...+...+ ..++++||+++.+++.|++.+.-. ++...|+. .|
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 132 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILA 132 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHh
Confidence 345699999999999999999876 579999999999999999886321 12233433 33
Q ss_pred c---cchhHHHHHHHhhccCCCCcEEEec
Q 006149 599 L---FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 599 l---~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
+ ....+.+.+.++| +|+|.++..
T Consensus 133 ~~~~~~~~~l~~~~~~L---~pgG~l~~~ 158 (266)
T 3ujc_A 133 LSLENKNKLFQKCYKWL---KPTGTLLIT 158 (266)
T ss_dssp SCHHHHHHHHHHHHHHE---EEEEEEEEE
T ss_pred cChHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 3 2456778899999 999987664
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0062 Score=62.56 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=62.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------------CCCeeEE------ecc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------------DKSLKVF------NHL 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------------d~rl~vf------~~l 599 (659)
...+||-||.|.|.+...+.+.++ .++++||++|.+++.|++.+ |+.. +...|+. .|+
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~~~~~ 150 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHF 150 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGT
T ss_pred CcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccEEEEcchHHhc
Confidence 446999999999999999999877 69999999999999999886 3321 1222322 334
Q ss_pred cc----------hhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 FC----------LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ~~----------~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.. ..+++.+.++| +|+|.++...
T Consensus 151 ~d~~~~~~~~~~~~~l~~~~~~L---kpgG~l~i~~ 183 (302)
T 3hem_A 151 ADGAGDAGFERYDTFFKKFYNLT---PDDGRMLLHT 183 (302)
T ss_dssp TCCSSCCCTTHHHHHHHHHHHSS---CTTCEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhc---CCCcEEEEEE
Confidence 22 48889999999 9999888755
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0038 Score=62.18 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=63.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC---------------CCCCeeEE-----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT---------------QDKSLKVF----- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~---------------~d~rl~vf----- 596 (659)
+...+||-||.|.|.+...+...++. ++++||++|.+++.|++.+ |+. ++...|+.
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 123 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGA 123 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecCh
Confidence 34469999999999999999999986 9999999999999998874 221 12233433
Q ss_pred -ecccchhHHHHHHHhhccCCCCcEEEec
Q 006149 597 -NHLFCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 597 -~~l~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
.|+....+.+.+.++| +|+|.++..
T Consensus 124 l~~~~~~~~l~~~~~~L---~pgG~l~~~ 149 (257)
T 3f4k_A 124 IYNIGFERGMNEWSKYL---KKGGFIAVS 149 (257)
T ss_dssp SCCCCHHHHHHHHHTTE---EEEEEEEEE
T ss_pred HhhcCHHHHHHHHHHHc---CCCcEEEEE
Confidence 3454567888999999 999988664
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0083 Score=57.78 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=60.9
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-------------CCCCeeEE------eccc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-------------QDKSLKVF------NHLF 600 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-------------~d~rl~vf------~~l~ 600 (659)
+...+||-||.|.|.+...+... ..++++||+++.+++.|++ .+.+ .+...|+. .|+-
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~-~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR-HGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG-GCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSC
T ss_pred CCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh-cCCCCeEEEecccccCCCCCceeEEEEechhhcCC
Confidence 34469999999999999999988 4699999999999999998 3321 12233433 3343
Q ss_pred c---hhHHHHHHHhhccCCCCcEEEecC
Q 006149 601 C---LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 601 ~---~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
. ..+.+.+.++| +|+|.+....
T Consensus 122 ~~~~~~~l~~~~~~L---~pgG~l~~~~ 146 (218)
T 3ou2_A 122 DDRFEAFWESVRSAV---APGGVVEFVD 146 (218)
T ss_dssp HHHHHHHHHHHHHHE---EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHc---CCCeEEEEEe
Confidence 3 67889999999 9999887654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.009 Score=58.35 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=62.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC----------------CCCeeEE-ec--
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ----------------DKSLKVF-NH-- 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~----------------d~rl~vf-~~-- 598 (659)
...+||=||-|.|.+...+...+|+.++++||+++.+++.|++.. |++. +..+|.. .+
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 346899999999999999999999999999999999999998764 3320 1112221 00
Q ss_pred ------------ccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 ------------LFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 ------------l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+....|.+.+.++| +|+|.+...+
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~L---kpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVM---GKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHH---TTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHc---CCCCEEEEEe
Confidence 22467899999999 9999887644
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0058 Score=60.51 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=61.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCC-------C--------------CCeeE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQ-------D--------------KSLKV 595 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~-------d--------------~rl~v 595 (659)
.+.+||-||.|.|..+.++...+| +.++++||++|..++.|+++| |+.. | ...|+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 357999999999999999999887 689999999999999999987 4421 1 22332
Q ss_pred E--ec--ccchhHHHHHHHhhccCCCCcEEEec
Q 006149 596 F--NH--LFCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 596 f--~~--l~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
. +. -....+++.+.++| +++|+++.+
T Consensus 152 V~~d~~~~~~~~~l~~~~~~L---kpgG~lv~~ 181 (232)
T 3cbg_A 152 IFIDADKRNYPRYYEIGLNLL---RRGGLMVID 181 (232)
T ss_dssp EEECSCGGGHHHHHHHHHHTE---EEEEEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHc---CCCeEEEEe
Confidence 2 11 11246788888999 999988763
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0033 Score=60.94 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=62.5
Q ss_pred CCCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhc---CCC--------------CCCCeeEE-----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFT--------------QDKSLKVF----- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~d~rl~vf----- 596 (659)
....+||-||.|.|.+...+.... |..++++||+++.+++.|++.+ +++ ++...|+.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFT 115 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESC
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehh
Confidence 345699999999999999998886 7789999999999999999876 221 11223433
Q ss_pred -ecc-cchhHHHHHHHhhccCCCCcEEEec
Q 006149 597 -NHL-FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 597 -~~l-~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
.++ ....+.+.+.++| +++|.++..
T Consensus 116 l~~~~~~~~~l~~~~~~L---kpgG~l~i~ 142 (219)
T 3dh0_A 116 FHELSEPLKFLEELKRVA---KPFAYLAII 142 (219)
T ss_dssp GGGCSSHHHHHHHHHHHE---EEEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHh---CCCeEEEEE
Confidence 223 2367889999999 999988764
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0096 Score=57.58 Aligned_cols=81 Identities=12% Similarity=0.040 Sum_probs=62.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC--------------CCCCeeEE------ecc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--------------QDKSLKVF------NHL 599 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~--------------~d~rl~vf------~~l 599 (659)
..+.+||-||.|.|.+...+.... .++++||+++.+++.|++.+.-. .+...|+. .|+
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 127 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYYL 127 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGGS
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHhC
Confidence 445799999999999999999885 58999999999999999987421 12233433 344
Q ss_pred cc----hhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 FC----LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ~~----~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.. ..+.+.+.++| +++|.+....
T Consensus 128 ~~~~~~~~~l~~~~~~L---~pgG~l~~~~ 154 (216)
T 3ofk_A 128 EDMTQMRTAIDNMVKML---APGGHLVFGS 154 (216)
T ss_dssp SSHHHHHHHHHHHHHTE---EEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHc---CCCCEEEEEe
Confidence 43 36688899999 9999888754
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0085 Score=56.30 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=60.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC---------------CCCeeEE--eccc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ---------------DKSLKVF--NHLF 600 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~---------------d~rl~vf--~~l~ 600 (659)
...+||-||.|.|.+...+... ..++++||++|.+++.|++.+ ++.. +...|+. ...+
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 129 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPI 129 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEEECCCc
Confidence 4569999999999999999888 569999999999999999886 3321 1122322 1111
Q ss_pred ------chhHHHHHHHhhccCCCCcEEEecCc
Q 006149 601 ------CLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 601 ------~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
...+.+.+.++| +++|.++...+
T Consensus 130 ~~~~~~~~~~l~~~~~~L---~~gG~l~~~~~ 158 (194)
T 1dus_A 130 RAGKEVLHRIIEEGKELL---KDNGEIWVVIQ 158 (194)
T ss_dssp TTCHHHHHHHHHHHHHHE---EEEEEEEEEEE
T ss_pred ccchhHHHHHHHHHHHHc---CCCCEEEEEEC
Confidence 246788889999 99998877664
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.016 Score=57.73 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=63.8
Q ss_pred CCCCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhc---CCCC--------------CCCeeE-Eecc-
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQ--------------DKSLKV-FNHL- 599 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~F---gl~~--------------d~rl~v-f~~l- 599 (659)
....+||-+|.|.|.+...+... .|..++++||++|.+++.|++.+ |++. +...|+ +.++
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~ 171 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLP 171 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEECSS
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEECCC
Confidence 34569999999999999999988 78889999999999999999986 5432 011122 1222
Q ss_pred cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
....+.+.+.++| +++|.++...
T Consensus 172 ~~~~~l~~~~~~L---~~gG~l~~~~ 194 (255)
T 3mb5_A 172 QPERVVEHAAKAL---KPGGFFVAYT 194 (255)
T ss_dssp CGGGGHHHHHHHE---EEEEEEEEEE
T ss_pred CHHHHHHHHHHHc---CCCCEEEEEE
Confidence 2456899999999 9999887654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0086 Score=63.70 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=61.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------------CC-CeeEE------e
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------------DK-SLKVF------N 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------------d~-rl~vf------~ 597 (659)
....+||-||.|.|.+...+.+.+|+.+++++|+ |.+++.|++.+ ++.+ -+ ..|++ .
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh 279 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLH 279 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGG
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhc
Confidence 4568999999999999999999999999999999 99999999875 2210 01 33443 1
Q ss_pred cccc---hhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HLFC---LQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l~~---~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
++-. ..+.+.++++| +|+|.+..
T Consensus 280 ~~~d~~~~~~L~~~~~~L---~pgG~l~i 305 (369)
T 3gwz_A 280 DWDDDDVVRILRRIATAM---KPDSRLLV 305 (369)
T ss_dssp GSCHHHHHHHHHHHHTTC---CTTCEEEE
T ss_pred cCCHHHHHHHHHHHHHHc---CCCCEEEE
Confidence 2222 25888899999 99997755
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0085 Score=59.55 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=63.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC--------------CCCCeeEE------ecc-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--------------QDKSLKVF------NHL- 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~--------------~d~rl~vf------~~l- 599 (659)
...+||-||.|.|.+...+....+. ++++||+++.+++.|++.+... ++...|+. .|+
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 122 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh
Confidence 5679999999999999999988765 8999999999999999987511 12233433 333
Q ss_pred cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
....+.+.++++| +|+|.++...
T Consensus 123 ~~~~~l~~~~~~L---kpgG~l~~~~ 145 (253)
T 3g5l_A 123 SFDDICKKVYINL---KSSGSFIFSV 145 (253)
T ss_dssp CHHHHHHHHHHHE---EEEEEEEEEE
T ss_pred hHHHHHHHHHHHc---CCCcEEEEEe
Confidence 2467888999999 9999887753
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0079 Score=59.04 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=62.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC------------CCCCCeeEE------ecc-cc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF------------TQDKSLKVF------NHL-FC 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl------------~~d~rl~vf------~~l-~~ 601 (659)
.+.+||-||.|.|.+...+....+ ++++||+++.+++.|++.+.- ..+...|+. +|+ ..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 119 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP 119 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH
Confidence 456899999999999999998875 799999999999999987641 123344543 344 24
Q ss_pred hhHHHHHH-HhhccCCCCcEEEecC
Q 006149 602 LQLEEDVN-LVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~-~~Lf~~~~~g~~~~n~ 625 (659)
..+.+.++ ++| +|+|.+....
T Consensus 120 ~~~l~~~~~~~L---kpgG~l~i~~ 141 (250)
T 2p7i_A 120 VALLKRINDDWL---AEGGRLFLVC 141 (250)
T ss_dssp HHHHHHHHHTTE---EEEEEEEEEE
T ss_pred HHHHHHHHHHhc---CCCCEEEEEc
Confidence 56888999 999 9999876644
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0087 Score=60.78 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=60.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCCC------------CCeeEE------ecc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQD------------KSLKVF------NHL 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~d------------~rl~vf------~~l 599 (659)
...+||-||.|.|.+...+...++. ++++||+++.+++.|++.+ |+... ...|+. +|+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~~~ 142 (287)
T 1kpg_A 64 PGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEHF 142 (287)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred CcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchhhc
Confidence 4569999999999999999866554 9999999999999999875 22110 122322 344
Q ss_pred ---cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 ---FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ---~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
....+.+.+.++| +|+|.++...
T Consensus 143 ~~~~~~~~l~~~~~~L---kpgG~l~~~~ 168 (287)
T 1kpg_A 143 GHERYDAFFSLAHRLL---PADGVMLLHT 168 (287)
T ss_dssp CTTTHHHHHHHHHHHS---CTTCEEEEEE
T ss_pred ChHHHHHHHHHHHHhc---CCCCEEEEEE
Confidence 2357889999999 9999887644
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0083 Score=57.58 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=61.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC---------------CCCCeeEE------ecc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---------------QDKSLKVF------NHL 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~---------------~d~rl~vf------~~l 599 (659)
...+||-||.|.|.++..+....+. ++++||++|.+++.|++.+.-. ++...|+. .++
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~ 120 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDAL 120 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhh
Confidence 4568999999999999999988665 8999999999999999876320 11123332 111
Q ss_pred c----------------chhHHHHHHHhhccCCCCcEEEecCc
Q 006149 600 F----------------CLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 600 ~----------------~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
. ...+.+.+.++| +++|.++...+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---kpgG~li~~~~ 160 (215)
T 2pxx_A 121 LAGERDPWTVSSEGVHTVDQVLSEVSRVL---VPGGRFISMTS 160 (215)
T ss_dssp TTTCSCTTSCCHHHHHHHHHHHHHHHHHE---EEEEEEEEEES
T ss_pred ccccccccccccchhHHHHHHHHHHHHhC---cCCCEEEEEeC
Confidence 1 157788899999 99998877554
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0079 Score=57.76 Aligned_cols=81 Identities=7% Similarity=0.023 Sum_probs=60.6
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC-------------CCCCeeEE-ec-c-cch
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT-------------QDKSLKVF-NH-L-FCL 602 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~-------------~d~rl~vf-~~-l-~~~ 602 (659)
..+||=||.|.|.+...+...+|..++++||++|.+++.|++.+ ++. .+...|+. .. + ...
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~~~~~ 145 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLN 145 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSSSHH
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEeccCCHH
Confidence 46999999999999999999999999999999999999998754 321 11223332 11 1 124
Q ss_pred hHHHHHHHhhccCCCCcEEEecC
Q 006149 603 QLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+.+.+.++| +|+|.+....
T Consensus 146 ~~l~~~~~~L---~~gG~l~~~~ 165 (207)
T 1jsx_A 146 DMVSWCHHLP---GEQGRFYALK 165 (207)
T ss_dssp HHHHHHTTSE---EEEEEEEEEE
T ss_pred HHHHHHHHhc---CCCcEEEEEe
Confidence 6777888888 9999876643
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0062 Score=63.00 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=60.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------------CCCeeEE------ecc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------------DKSLKVF------NHL 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------------d~rl~vf------~~l 599 (659)
...+||-||.|.|.+...+...+ +.++++||+++.+++.|++.+ |+.. +...|+. .|+
T Consensus 90 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~~~ 168 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHF 168 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred CcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHHhc
Confidence 45699999999999999998876 459999999999999999875 3221 0122322 334
Q ss_pred ---cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 ---FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ---~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
....+.+.+.++| +|+|.++...
T Consensus 169 ~~~~~~~~l~~~~~~L---kpgG~l~~~~ 194 (318)
T 2fk8_A 169 GHENYDDFFKRCFNIM---PADGRMTVQS 194 (318)
T ss_dssp CGGGHHHHHHHHHHHS---CTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHhc---CCCcEEEEEE
Confidence 2357888999999 9999887644
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.011 Score=56.83 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=60.9
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC---------------CCCCeeEE------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT---------------QDKSLKVF------ 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~---------------~d~rl~vf------ 596 (659)
.+.+||-||.|.|.+...+... |..++++||+++.+++.|++.+ ++. ++...|+.
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 121 (219)
T 3dlc_A 43 TAGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSV 121 (219)
T ss_dssp CEEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchH
Confidence 3449999999999999999998 7889999999999999999884 221 11223333
Q ss_pred ecc-cchhHHHHHHHhhccCCCCcEEEec
Q 006149 597 NHL-FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 597 ~~l-~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
.|+ ....+.+.+.++| +|+|.+...
T Consensus 122 ~~~~~~~~~l~~~~~~L---~pgG~l~~~ 147 (219)
T 3dlc_A 122 FFWEDVATAFREIYRIL---KSGGKTYIG 147 (219)
T ss_dssp GGCSCHHHHHHHHHHHE---EEEEEEEEE
T ss_pred hhccCHHHHHHHHHHhC---CCCCEEEEE
Confidence 222 2367888999999 999987663
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.01 Score=62.75 Aligned_cols=80 Identities=11% Similarity=0.095 Sum_probs=60.4
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC----------C---CCeeEE------e
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ----------D---KSLKVF------N 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~----------d---~rl~vf------~ 597 (659)
....+||=||.|.|.+...+...+|+.+++++|+ |.+++.|++.+ ++.. + +.-|++ .
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh 267 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILY 267 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGG
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhc
Confidence 4567999999999999999999999999999999 99999999764 2211 0 011333 1
Q ss_pred ccc---chhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HLF---CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l~---~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
++- ...+.+.++++| +|+|.+..
T Consensus 268 ~~~d~~~~~~l~~~~~~L---~pgG~l~i 293 (359)
T 1x19_A 268 SANEQLSTIMCKKAFDAM---RSGGRLLI 293 (359)
T ss_dssp GSCHHHHHHHHHHHHTTC---CTTCEEEE
T ss_pred cCCHHHHHHHHHHHHHhc---CCCCEEEE
Confidence 222 356788899999 99997743
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.011 Score=60.17 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=63.0
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCC-ccEEEEecChhHHHHHHhhcCCC---------------CCCCeeEE------e
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFT---------------QDKSLKVF------N 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~-~~i~~VEiDp~V~~vA~~~Fgl~---------------~d~rl~vf------~ 597 (659)
..+.+||-||.|.|.++..+...+|. .++++||++|.+++.|++.+... .+...|+. .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~ 100 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLL 100 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCGG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChhh
Confidence 45689999999999999999999984 89999999999999999875321 11233433 2
Q ss_pred cc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
++ ....+.+.++++| +|+|.+..
T Consensus 101 ~~~~~~~~l~~~~~~L---kpgG~l~~ 124 (284)
T 3gu3_A 101 HMTTPETMLQKMIHSV---KKGGKIIC 124 (284)
T ss_dssp GCSSHHHHHHHHHHTE---EEEEEEEE
T ss_pred cCCCHHHHHHHHHHHc---CCCCEEEE
Confidence 22 2367888999999 99998874
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.008 Score=59.16 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=62.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC-----------------CCCCeeEEe---
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT-----------------QDKSLKVFN--- 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~-----------------~d~rl~vf~--- 597 (659)
...+||=||-|.|.+...+...+|+.++++||+++.+++.|++.. |+. ++..+|...
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 446899999999999999999999999999999999999998774 332 111222220
Q ss_pred ------------cccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 ------------HLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ------------~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+...+|.+.+.++| +|+|++..-+
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~L---kpGG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKL---QLGGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHE---EEEEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHc---CCCcEEEEEe
Confidence 022236999999999 9999886644
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.016 Score=57.50 Aligned_cols=79 Identities=11% Similarity=0.028 Sum_probs=60.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC--------------CCCeeEE------e
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ--------------DKSLKVF------N 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~--------------d~rl~vf------~ 597 (659)
...+||-||.|.|.+...+...+ ..++++||++|.+++.|++.+ |+.. +...|+. .
T Consensus 36 ~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~V~~~~~~~ 114 (256)
T 1nkv_A 36 PGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATW 114 (256)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCCEEEECCChH
Confidence 44699999999999999999887 468999999999999998765 3321 2233433 1
Q ss_pred cc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
++ ....+.+.++++| +|+|.++.
T Consensus 115 ~~~~~~~~l~~~~r~L---kpgG~l~~ 138 (256)
T 1nkv_A 115 IAGGFAGAEELLAQSL---KPGGIMLI 138 (256)
T ss_dssp GTSSSHHHHHHHTTSE---EEEEEEEE
T ss_pred hcCCHHHHHHHHHHHc---CCCeEEEE
Confidence 22 2467788999999 99997766
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0099 Score=57.33 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=61.9
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----------CCCCeeEE------eccc---c
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----------QDKSLKVF------NHLF---C 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----------~d~rl~vf------~~l~---~ 601 (659)
...+||-||.|.|.+...+... +.++++||+++.+++.|++.++.. .+...|+. .|+. .
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~ 120 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDEL 120 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHHHH
T ss_pred CCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHHHH
Confidence 4579999999999999999987 468999999999999999876432 23344543 3332 3
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+.+.+.++| +++|.++...
T Consensus 121 ~~~l~~~~~~L---kpgG~l~~~~ 141 (211)
T 3e23_A 121 ADVLKLIWRAL---KPGGLFYASY 141 (211)
T ss_dssp HHHHHHHHHHE---EEEEEEEEEE
T ss_pred HHHHHHHHHhc---CCCcEEEEEE
Confidence 46788999999 9999887754
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.009 Score=60.34 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=43.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 587 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl 587 (659)
...+||=||.|.|.++..+...+|..+|++|||||.++++|++.+..
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~ 82 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLEL 82 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTS
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHh
Confidence 45689999999999999999999989999999999999999988654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0099 Score=57.51 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=59.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhc---CCCC--------------CCCeeEE-ecccc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQ--------------DKSLKVF-NHLFC 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~F---gl~~--------------d~rl~vf-~~l~~ 601 (659)
...+||.||.|.|.+...+.+.. |..++++||++|.+++.|++.+ ++.. +...|+. .....
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~ 156 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAG 156 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCch
Confidence 44699999999999999998877 6679999999999999999875 3221 1122332 11111
Q ss_pred hhHHHHHHHhhccCCCCcEEEecCch
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNSFP 627 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~~~ 627 (659)
..+.+.+.++| +++|.++....+
T Consensus 157 ~~~~~~~~~~L---~pgG~lv~~~~~ 179 (215)
T 2yxe_A 157 PKIPEPLIRQL---KDGGKLLMPVGR 179 (215)
T ss_dssp SSCCHHHHHTE---EEEEEEEEEESS
T ss_pred HHHHHHHHHHc---CCCcEEEEEECC
Confidence 22336788889 999988776543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.027 Score=55.86 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=61.8
Q ss_pred CCCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhc----CCCC--------------CCCeeEE-eccc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF----GFTQ--------------DKSLKVF-NHLF 600 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~F----gl~~--------------d~rl~vf-~~l~ 600 (659)
...+||.+|.|.|.+...+.+. .|..++++||++|.+++.|++.+ |... +...|+. .++-
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~~~ 175 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDLM 175 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEESS
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEECCc
Confidence 4469999999999999999988 67789999999999999999886 5210 0112222 2222
Q ss_pred -chhHHHHHHHhhccCCCCcEEEecC
Q 006149 601 -CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 601 -~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
...+.+.+.++| +++|.++...
T Consensus 176 ~~~~~l~~~~~~L---~~gG~l~~~~ 198 (258)
T 2pwy_A 176 EPWKVLEKAALAL---KPDRFLVAYL 198 (258)
T ss_dssp CGGGGHHHHHHHE---EEEEEEEEEE
T ss_pred CHHHHHHHHHHhC---CCCCEEEEEe
Confidence 348889999999 9999877644
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.023 Score=57.92 Aligned_cols=82 Identities=13% Similarity=0.054 Sum_probs=62.0
Q ss_pred CCCeEEEEccCc---chHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-------C-------------------C
Q 006149 541 KSVKAVVIGLGA---GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-------D-------------------K 591 (659)
Q Consensus 541 ~~~~vLiiGlGg---G~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-------d-------------------~ 591 (659)
...+||-||.|. |.+...+.+.+|+.+|++||+||.|++.|++.+.-.. | +
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 347999999999 9998888888999999999999999999998773210 0 1
Q ss_pred CeeEE------eccc---chhHHHHHHHhhccCCCCcEEEecC
Q 006149 592 SLKVF------NHLF---CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 592 rl~vf------~~l~---~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+.+++ .|+- ...+...+.++| +|+|.++...
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L---~pGG~l~i~~ 196 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDAL---APGSYLFMTS 196 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHS---CTTCEEEEEE
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhC---CCCcEEEEEE
Confidence 22222 2332 256788899999 9999887644
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.021 Score=60.08 Aligned_cols=116 Identities=11% Similarity=0.165 Sum_probs=81.6
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC-------------------
Q 006149 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD------------------- 114 (659)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~------------------- 114 (659)
..+.+++.. .+...|+.+|||.......|... +...++-||+ +.+++.=++.....
T Consensus 87 ~~v~~fl~~---~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~ 162 (334)
T 1rjd_A 87 AAILEFLVA---NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPF 162 (334)
T ss_dssp HHHHHHHHH---CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTE
T ss_pred HHHHHHHHH---CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhccccccccccccc
Confidence 345555542 35689999999999999888764 3347788888 66665333333222
Q ss_pred ---CCCcEEEEeecCCCCC---------CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 115 ---RSDMRWRVMDMTSMQF---------MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 115 ---~~~i~~~~~D~~~l~~---------~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
..+.+++.+|+.+... ..+...++++.+++.++.... ..++++.+.... |+|.+++.+..
T Consensus 163 ~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~-----~~~ll~~ia~~~-~~~~~v~~e~i 234 (334)
T 1rjd_A 163 LIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNE-----SQLLINTIMSKF-SHGLWISYDPI 234 (334)
T ss_dssp EEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHH-----HHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred ccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHH-----HHHHHHHHHhhC-CCcEEEEEecc
Confidence 2578899999988421 235678999999999987554 678888888877 78888766654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.013 Score=58.53 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=60.4
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC--------------CCCCeeEE------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT--------------QDKSLKVF------ 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~d~rl~vf------ 596 (659)
....+||-||.|.|.+...+....+ ++++||++|.+++.|++.+ |++ ++...|+.
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l 113 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA 113 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhh
Confidence 3457999999999999999998875 8999999999999999874 221 12234443
Q ss_pred ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.|+ ....+...++++| +|+|.+..
T Consensus 114 ~~~~d~~~~l~~~~r~L---kpgG~l~~ 138 (260)
T 1vl5_A 114 HHFPNPASFVSEAYRVL---KKGGQLLL 138 (260)
T ss_dssp GGCSCHHHHHHHHHHHE---EEEEEEEE
T ss_pred HhcCCHHHHHHHHHHHc---CCCCEEEE
Confidence 222 1357889999999 99997765
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.012 Score=60.25 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=63.0
Q ss_pred CCCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhcCC----C---------------CC------CCe
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGF----T---------------QD------KSL 593 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~Fgl----~---------------~d------~rl 593 (659)
....+||=||.|.|.+...+...+ +..++++||++|.+++.|++.+.. . .+ ...
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 356799999999999999999887 888999999999999999986411 0 01 233
Q ss_pred eEE------ecccchhHHHHHHHhhccCCCCcEEEe
Q 006149 594 KVF------NHLFCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 594 ~vf------~~l~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
|+. .|+.-..+++.++++| +|+|.++.
T Consensus 115 D~V~~~~~l~~~~~~~~l~~~~~~L---kpgG~l~i 147 (299)
T 3g5t_A 115 DMITAVECAHWFDFEKFQRSAYANL---RKDGTIAI 147 (299)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHE---EEEEEEEE
T ss_pred eEEeHhhHHHHhCHHHHHHHHHHhc---CCCcEEEE
Confidence 333 2334467899999999 99998876
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.014 Score=58.42 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=61.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-----------CCCCCCeeEE-------eccc-
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----------FTQDKSLKVF-------NHLF- 600 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-----------l~~d~rl~vf-------~~l~- 600 (659)
+.+.+||-||.|.|.+...|.... .++++||++|.+++.|++.+. ++.+...|+. .|+.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 345799999999999999999885 479999999999999998753 1112334433 2331
Q ss_pred ---chhHHHHHHHhhccCCCCcEEEecC
Q 006149 601 ---CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 601 ---~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
...+.+.++++| +|+|.++...
T Consensus 127 ~~~~~~~l~~~~~~L---~pgG~l~i~~ 151 (263)
T 3pfg_A 127 QAELDAALERFAAHV---LPDGVVVVEP 151 (263)
T ss_dssp HHHHHHHHHHHHHTE---EEEEEEEECC
T ss_pred HHHHHHHHHHHHHhc---CCCcEEEEEe
Confidence 235678899999 9999998864
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0066 Score=60.06 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=60.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-----------------CCCCeeEE------e
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----------------QDKSLKVF------N 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-----------------~d~rl~vf------~ 597 (659)
.+.+||-||.|.|.+...|.... ..++++||+++.+++.|++.+.-. ++...|+. .
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 46799999999999999988776 459999999999999999876321 11234433 2
Q ss_pred ccc---chhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HLF---CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l~---~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
|+- ...+.+.+.++| +++|.++.
T Consensus 158 ~~~~~~~~~~l~~~~~~L---kpgG~l~i 183 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSL---RPNGIIVI 183 (241)
T ss_dssp GSCHHHHHHHHHHHHHHE---EEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhc---CCCeEEEE
Confidence 232 126888999999 99997766
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0095 Score=57.86 Aligned_cols=80 Identities=19% Similarity=0.202 Sum_probs=60.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC---------------C-CCCCeeEE--ec---cc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF---------------T-QDKSLKVF--NH---LF 600 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl---------------~-~d~rl~vf--~~---l~ 600 (659)
..+||-||.|.|.+...+....+ ++++||++|.+++.|++.+.. + ++...|+. .. +.
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~ 116 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 116 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhC
Confidence 57999999999999999999876 899999999999999987511 1 11234433 11 11
Q ss_pred ----chhHHHHHHHhhccCCCCcEEEecCc
Q 006149 601 ----CLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 601 ----~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
...+.+.++++| +++|.++....
T Consensus 117 ~~~~~~~~l~~~~~~L---~~gG~l~~~~~ 143 (227)
T 1ve3_A 117 EPLELNQVFKEVRRVL---KPSGKFIMYFT 143 (227)
T ss_dssp CHHHHHHHHHHHHHHE---EEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHc---CCCcEEEEEec
Confidence 246788899999 99998876543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.02 Score=60.96 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=56.1
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC--------------C--CCCeeEE--eccc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT--------------Q--DKSLKVF--NHLF 600 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~--d~rl~vf--~~l~ 600 (659)
..+||-|| |.|.+...+....|..+|++|||||.++++|++.+ |+. . +...|+. +..+
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~ 251 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE 251 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence 57999999 99999999998888779999999999999999885 431 0 1122322 1111
Q ss_pred ----chhHHHHHHHhhccCCCCc
Q 006149 601 ----CLQLEEDVNLVLFGLSSES 619 (659)
Q Consensus 601 ----~~~f~~~~~~~Lf~~~~~g 619 (659)
...|++.+.++| +|+|
T Consensus 252 ~~~~~~~~l~~~~~~L---kpgG 271 (373)
T 2qm3_A 252 TLEAIRAFVGRGIATL---KGPR 271 (373)
T ss_dssp SHHHHHHHHHHHHHTB---CSTT
T ss_pred chHHHHHHHHHHHHHc---ccCC
Confidence 146788899999 9999
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.015 Score=55.62 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=61.0
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC------------CCCCeeEE------ecc---c
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVF------NHL---F 600 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~------------~d~rl~vf------~~l---~ 600 (659)
..+||-||.|.|.+...|... +.++++||+++.+++.|++.+.-. ++...|+. .|+ .
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 579999999999999999887 458999999999999999874211 12334433 344 3
Q ss_pred chhHHHHHHHhhccCCCCcEEEecC
Q 006149 601 CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 601 ~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
...+.+.+.++| +|+|.+....
T Consensus 120 ~~~~l~~~~~~L---~pgG~l~i~~ 141 (203)
T 3h2b_A 120 LPDALVALRMAV---EDGGGLLMSF 141 (203)
T ss_dssp HHHHHHHHHHTE---EEEEEEEEEE
T ss_pred HHHHHHHHHHHc---CCCcEEEEEE
Confidence 467888999999 9999887644
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.011 Score=59.40 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=61.4
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC---------------CCCCeeEE-----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT---------------QDKSLKVF----- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~---------------~d~rl~vf----- 596 (659)
....+||-||.|.|.+...+.+.+ ..++++||+++.+++.|++.+ |+. ++...|+.
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 138 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALES 138 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEech
Confidence 345799999999999999998876 569999999999999998875 221 12233433
Q ss_pred -ecc-cchhHHHHHHHhhccCCCCcEEEec
Q 006149 597 -NHL-FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 597 -~~l-~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
.|+ ....+.+.++++| +|+|.++..
T Consensus 139 l~~~~~~~~~l~~~~~~L---~pgG~l~i~ 165 (273)
T 3bus_A 139 LHHMPDRGRALREMARVL---RPGGTVAIA 165 (273)
T ss_dssp TTTSSCHHHHHHHHHTTE---EEEEEEEEE
T ss_pred hhhCCCHHHHHHHHHHHc---CCCeEEEEE
Confidence 333 2467888999999 999977653
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.03 Score=55.26 Aligned_cols=75 Identities=13% Similarity=0.242 Sum_probs=58.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCe----------------------eEE--
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSL----------------------KVF-- 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl----------------------~vf-- 596 (659)
...+||-||.|.|.+...|....+ ++++||++|.+++.|++.+... ++ ++.
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~d~v~~ 130 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAA---NISYRLLDGLVPEQAAQIHSEIGDANIYM 130 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCT---TEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCccc---CceEEECcccccccccccccccCccEEEE
Confidence 446899999999999999999887 8999999999999999987422 22 122
Q ss_pred ----eccc---chhHHHHHHHhhccCCCCcEEEe
Q 006149 597 ----NHLF---CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ----~~l~---~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++- ...+.+.+.++| +|+|.+..
T Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~L---kpgG~l~i 161 (245)
T 3ggd_A 131 RTGFHHIPVEKRELLGQSLRILL---GKQGAMYL 161 (245)
T ss_dssp ESSSTTSCGGGHHHHHHHHHHHH---TTTCEEEE
T ss_pred cchhhcCCHHHHHHHHHHHHHHc---CCCCEEEE
Confidence 1222 247888999999 99997544
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.023 Score=56.42 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=59.5
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC---------------CC-CCCCeeEE------e
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---------------FT-QDKSLKVF------N 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg---------------l~-~d~rl~vf------~ 597 (659)
....+||-||.|.|.+...+... ..++++||+++.+++.|++.+. ++ ++...|+. .
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence 34579999999999999999887 4689999999999999998861 00 11123332 2
Q ss_pred cc-cchhHHHHHHHhhccCCCCcEEEec
Q 006149 598 HL-FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 598 ~l-~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
++ ....+.+.+.++| +|+|.++..
T Consensus 116 ~~~~~~~~l~~~~~~L---~pgG~l~~~ 140 (263)
T 2yqz_A 116 LVPDWPKVLAEAIRVL---KPGGALLEG 140 (263)
T ss_dssp GCTTHHHHHHHHHHHE---EEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHC---CCCcEEEEE
Confidence 22 2367888999999 999987664
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.023 Score=59.53 Aligned_cols=78 Identities=9% Similarity=0.024 Sum_probs=60.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC----------------CCCCeeEE------
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT----------------QDKSLKVF------ 596 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~----------------~d~rl~vf------ 596 (659)
+.+||=||.|.|.+...+.+.+|..+++++|+ |.+++.|++.+ ++. .....|++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 68999999999999999999999999999999 99999998864 211 11124544
Q ss_pred eccc---chhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHLF---CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l~---~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++- ...+.+.++++| +|+|.+..
T Consensus 259 h~~~~~~~~~~l~~~~~~L---~pgG~l~i 285 (352)
T 3mcz_A 259 HYFDAREAREVIGHAAGLV---KPGGALLI 285 (352)
T ss_dssp GGSCHHHHHHHHHHHHHTE---EEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHc---CCCCEEEE
Confidence 1221 157888899999 99997655
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.014 Score=57.71 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=60.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC---------------CCCCeeEE------ec
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---------------QDKSLKVF------NH 598 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~---------------~d~rl~vf------~~ 598 (659)
..+.+||-||.|.|.+...+.... ..++++||+++.+++.|++.+.-. ++...|+. .|
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 170 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhh
Confidence 346799999999999999888776 457999999999999999886421 12233433 23
Q ss_pred cc---chhHHHHHHHhhccCCCCcEEEe
Q 006149 599 LF---CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 599 l~---~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+. ...+.+.+.++| +|+|.++.
T Consensus 171 ~~~~~~~~~l~~~~~~L---kpgG~l~i 195 (254)
T 1xtp_A 171 LTDADFVKFFKHCQQAL---TPNGYIFF 195 (254)
T ss_dssp SCHHHHHHHHHHHHHHE---EEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhc---CCCeEEEE
Confidence 31 356788899999 99997765
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.026 Score=56.43 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=61.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC----------CC-CCCCeeEE------eccc--c
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG----------FT-QDKSLKVF------NHLF--C 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg----------l~-~d~rl~vf------~~l~--~ 601 (659)
.+.+||-||.|.|.+...+... ..++++||+++.+++.|++... ++ ++...|+. .|+. .
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~ 131 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK 131 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhccccH
Confidence 4579999999999999999887 3589999999999999998753 11 12344543 1221 3
Q ss_pred hhHHHHHHHhhccCCCCcEEEecCc
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
..+.+.+.++| +|+|.++...+
T Consensus 132 ~~~l~~~~~~L---kpgG~l~~~~~ 153 (260)
T 2avn_A 132 DKAFSEIRRVL---VPDGLLIATVD 153 (260)
T ss_dssp HHHHHHHHHHE---EEEEEEEEEEE
T ss_pred HHHHHHHHHHc---CCCeEEEEEeC
Confidence 56778899999 99998877553
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.019 Score=58.31 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=62.2
Q ss_pred CCCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhc----CCCC-------------CCCeeEE-ecc-c
Q 006149 541 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF----GFTQ-------------DKSLKVF-NHL-F 600 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~F----gl~~-------------d~rl~vf-~~l-~ 600 (659)
...+||-+|.|.|.+...+... .|..++++||++|.+++.|++.+ |... +...|+. .++ .
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi~~~~~ 189 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPD 189 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCSC
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEEEcCcC
Confidence 4469999999999999999987 78889999999999999999876 4210 0112222 222 2
Q ss_pred chhHHHHHHHhhccCCCCcEEEecC
Q 006149 601 CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 601 ~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
...+.+.+.++| +++|.+...+
T Consensus 190 ~~~~l~~~~~~L---kpgG~l~i~~ 211 (275)
T 1yb2_A 190 PWNHVQKIASMM---KPGSVATFYL 211 (275)
T ss_dssp GGGSHHHHHHTE---EEEEEEEEEE
T ss_pred HHHHHHHHHHHc---CCCCEEEEEe
Confidence 357889999999 9999887655
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.014 Score=57.63 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=57.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------C--------CCeeEE-ecccch
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------D--------KSLKVF-NHLFCL 602 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------d--------~rl~vf-~~l~~~ 602 (659)
...+||.||.|.|.+...+.+..+ .++++||++|.+++.|++.+ |+.. | ...|+. ......
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~ 169 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAP 169 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBS
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCccEEEECCcHH
Confidence 346899999999999999999887 79999999999999999875 3321 1 112322 111112
Q ss_pred hHHHHHHHhhccCCCCcEEEecC
Q 006149 603 QLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+.+.+.+.| +++|.++..+
T Consensus 170 ~~~~~~~~~L---~pgG~lvi~~ 189 (235)
T 1jg1_A 170 KIPEPLIEQL---KIGGKLIIPV 189 (235)
T ss_dssp SCCHHHHHTE---EEEEEEEEEE
T ss_pred HHHHHHHHhc---CCCcEEEEEE
Confidence 2345778888 9999887755
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.021 Score=55.44 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=60.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC----------------------CCCeeEE-
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ----------------------DKSLKVF- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~----------------------d~rl~vf- 596 (659)
+...+||-||.|.|.+...+... +.++++||+++.+++.|++.+.-.. +...|+.
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 34579999999999999999887 4699999999999999998653211 1223332
Q ss_pred -----ecccc-h---hHHHHHHHhhccCCCCcEEEec
Q 006149 597 -----NHLFC-L---QLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 597 -----~~l~~-~---~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
.++.. . .+.+.+.++| +++|.+...
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L---~pgG~l~~~ 140 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVL---KPGAYLYLV 140 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHE---EEEEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHc---CCCeEEEEE
Confidence 23322 2 6889999999 999988764
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.021 Score=57.70 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=60.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-----------CCCCCCeeEE------ecc-cch
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----------FTQDKSLKVF------NHL-FCL 602 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-----------l~~d~rl~vf------~~l-~~~ 602 (659)
...+||-||.|.|.+...+.. +..++++||++|.+++.|++.+. ++.+...|+. .++ ...
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~~ 134 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSNAMLHWVKEPE 134 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEESCGGGCSCHH
T ss_pred CCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEcchhhhCcCHH
Confidence 457999999999999999988 67899999999999999998741 1112234433 222 234
Q ss_pred hHHHHHHHhhccCCCCcEEEecC
Q 006149 603 QLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+...++++| +|+|.++...
T Consensus 135 ~~l~~~~~~L---kpgG~l~~~~ 154 (279)
T 3ccf_A 135 AAIASIHQAL---KSGGRFVAEF 154 (279)
T ss_dssp HHHHHHHHHE---EEEEEEEEEE
T ss_pred HHHHHHHHhc---CCCcEEEEEe
Confidence 6888999999 9999887643
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.037 Score=53.34 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=60.7
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC---------------CCCCCeeEE------ec
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF---------------TQDKSLKVF------NH 598 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl---------------~~d~rl~vf------~~ 598 (659)
..+.+||-||.|.|.+...+... +.++++||+++.+++.|++.-.. ..+...|+. .+
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~~ 128 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALLH 128 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCCS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhhh
Confidence 34589999999999999999887 46899999999999999987211 112224433 11
Q ss_pred ccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 LFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
-....+.+.++++| +|+|.++...
T Consensus 129 ~~~~~~l~~~~~~L---~pgG~l~~~~ 152 (227)
T 3e8s_A 129 QDIIELLSAMRTLL---VPGGALVIQT 152 (227)
T ss_dssp SCCHHHHHHHHHTE---EEEEEEEEEE
T ss_pred hhHHHHHHHHHHHh---CCCeEEEEEe
Confidence 12357889999999 9999887744
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.033 Score=53.78 Aligned_cols=45 Identities=13% Similarity=-0.057 Sum_probs=39.5
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
+...+||.+|-|.|.+..+|.+. +.+|++||+++.+++.|++-.+
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~ 65 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERG 65 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHcc
Confidence 34579999999999999999987 3589999999999999998754
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.022 Score=55.66 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=61.0
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-----------CCCCCCeeEE-------ecccc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----------FTQDKSLKVF-------NHLFC 601 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-----------l~~d~rl~vf-------~~l~~ 601 (659)
+.+.+||-||.|.|.+...+...++ ++++||++|.+++.|++.+. ++.+...|+. .|+..
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 3457999999999999999998875 89999999999999998752 1112234433 22322
Q ss_pred ----hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 ----LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ----~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+.+.++++| +|+|.++...
T Consensus 117 ~~~~~~~l~~~~~~L---~pgG~l~~~~ 141 (239)
T 3bxo_A 117 TEELGAAVASFAEHL---EPGGVVVVEP 141 (239)
T ss_dssp HHHHHHHHHHHHHTE---EEEEEEEECC
T ss_pred HHHHHHHHHHHHHhc---CCCeEEEEEe
Confidence 46778889999 9999888864
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.019 Score=56.28 Aligned_cols=81 Identities=14% Similarity=0.104 Sum_probs=61.0
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC--------------CCCCeeEE------ecc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--------------QDKSLKVF------NHL 599 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~--------------~d~rl~vf------~~l 599 (659)
+...+||-||.|.|.+...+... +.++++||++|.+++.|++..... ++...|+. .|+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 34579999999999999999987 468999999999999999874211 12233433 333
Q ss_pred c-chhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 F-CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ~-~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
- ...+.+.+.++| +|+|.+....
T Consensus 130 ~~~~~~l~~~~~~L---~pgG~l~i~~ 153 (242)
T 3l8d_A 130 EEPLRALNEIKRVL---KSDGYACIAI 153 (242)
T ss_dssp SCHHHHHHHHHHHE---EEEEEEEEEE
T ss_pred cCHHHHHHHHHHHh---CCCeEEEEEE
Confidence 2 347889999999 9999877644
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.013 Score=57.60 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=59.1
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-----------------CCCCeeEE------ec
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----------------QDKSLKVF------NH 598 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-----------------~d~rl~vf------~~ 598 (659)
+.+||-||.|.|.+...+.. +..++++||++|.+++.|++.+.-. .+...|+. .+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 45999999999999999976 4678999999999999999887421 12233433 22
Q ss_pred c---cchhHHHHHHHhhccCCCCcEEEec
Q 006149 599 L---FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 599 l---~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
+ ....+.+.+.++| +|+|.++..
T Consensus 145 ~~~~~~~~~l~~~~~~L---kpgG~l~~~ 170 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELL---KPDGELITL 170 (235)
T ss_dssp SCGGGHHHHHHHHHHHE---EEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHC---CCCcEEEEE
Confidence 2 2356788999999 999988753
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=95.89 E-value=0.012 Score=58.71 Aligned_cols=45 Identities=31% Similarity=0.321 Sum_probs=40.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
...+||=||.|.|.+...+...+|..++++||+++.+++.|++.+
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~ 93 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRI 93 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHH
Confidence 456899999999999999999999889999999999999997653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.018 Score=58.47 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=62.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC----------------CCCCeeEE-----
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT----------------QDKSLKVF----- 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~----------------~d~rl~vf----- 596 (659)
.+.+||-||.|.|.+...+... ..++++||++|.+++.|++.+ |+. .+...|+.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 3579999999999999999887 569999999999999999875 221 12233433
Q ss_pred -ecc-cchhHHHHHHHhhccCCCCcEEEecCc
Q 006149 597 -NHL-FCLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 597 -~~l-~~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
.|+ ....+.+.+.++| +|+|.+....+
T Consensus 146 l~~~~~~~~~l~~~~~~L---kpgG~l~~~~~ 174 (285)
T 4htf_A 146 LEWVADPRSVLQTLWSVL---RPGGVLSLMFY 174 (285)
T ss_dssp GGGCSCHHHHHHHHHHTE---EEEEEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHc---CCCeEEEEEEe
Confidence 233 2357889999999 99999887664
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.013 Score=56.22 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=58.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------------CCCeeEE-e-ccc--c
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------------DKSLKVF-N-HLF--C 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------------d~rl~vf-~-~l~--~ 601 (659)
...+||-||.|.|.+...+.+. +..++++||+++.+++.|++.+ ++.. +...|+. . ..+ .
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~~ 138 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEIL 138 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHHH
Confidence 4579999999999999998874 6669999999999999999875 3221 1222332 1 111 2
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+.+.+.++| +++|.++...
T Consensus 139 ~~~l~~~~~~L---~~gG~l~~~~ 159 (205)
T 3grz_A 139 LDLIPQLDSHL---NEDGQVIFSG 159 (205)
T ss_dssp HHHGGGSGGGE---EEEEEEEEEE
T ss_pred HHHHHHHHHhc---CCCCEEEEEe
Confidence 45566777788 9999887753
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.012 Score=55.84 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=58.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC-------------CCCCeeEE------ec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT-------------QDKSLKVF------NH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~-------------~d~rl~vf------~~ 598 (659)
.+.+||-||.|.|.+...+... ..++++||+++.+++.|++.+ +++ .+...|+. .|
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~ 109 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMF 109 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEEEEESCGGG
T ss_pred CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEEEEcchhhh
Confidence 4569999999999999999887 469999999999999998864 221 12233433 23
Q ss_pred c---cchhHHHHHHHhhccCCCCcEEEe
Q 006149 599 L---FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 599 l---~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+ ....+.+.+.++| +++|.+..
T Consensus 110 ~~~~~~~~~l~~~~~~L---~~gG~l~~ 134 (199)
T 2xvm_A 110 LEAKTIPGLIANMQRCT---KPGGYNLI 134 (199)
T ss_dssp SCGGGHHHHHHHHHHTE---EEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhc---CCCeEEEE
Confidence 3 2356788899999 99997544
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.02 Score=56.46 Aligned_cols=81 Identities=22% Similarity=0.198 Sum_probs=61.7
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-----------CCCCeeEE------ecccc-
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----------QDKSLKVF------NHLFC- 601 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-----------~d~rl~vf------~~l~~- 601 (659)
....+||-||.|.|.+...+... +.++++||+++.+++.|++...+. ++...|+. +|+-.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~ 117 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPE 117 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGG
T ss_pred cCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEECCchhhCCcH
Confidence 34579999999999999999987 457999999999999998752111 23345544 45532
Q ss_pred --hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 --LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 --~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+.+.++++| +|+|.+....
T Consensus 118 ~~~~~l~~~~~~L---kpgG~l~~~~ 140 (240)
T 3dli_A 118 RLFELLSLCYSKM---KYSSYIVIES 140 (240)
T ss_dssp GHHHHHHHHHHHB---CTTCCEEEEE
T ss_pred HHHHHHHHHHHHc---CCCcEEEEEe
Confidence 57889999999 9999887654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.017 Score=58.84 Aligned_cols=81 Identities=21% Similarity=0.289 Sum_probs=60.9
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC---------------CCCCeeEE-----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT---------------QDKSLKVF----- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~---------------~d~rl~vf----- 596 (659)
....+||-||.|.|.+...+...++ .++++||+++.+++.|++.+ |+. ++...|+.
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 159 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 159 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecch
Confidence 3457999999999999999988763 59999999999999998764 221 12234443
Q ss_pred -eccc-chhHHHHHHHhhccCCCCcEEEec
Q 006149 597 -NHLF-CLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 597 -~~l~-~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
.|+- ...+.+.++++| +|+|.++..
T Consensus 160 l~~~~~~~~~l~~~~~~L---kpgG~l~~~ 186 (297)
T 2o57_A 160 FLHSPDKLKVFQECARVL---KPRGVMAIT 186 (297)
T ss_dssp GGGCSCHHHHHHHHHHHE---EEEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHc---CCCeEEEEE
Confidence 2332 367889999999 999987664
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.016 Score=56.15 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=58.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHH----HHhh---cCCC-------------C-CCCeeEEecc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL----AEDY---FGFT-------------Q-DKSLKVFNHL 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~v----A~~~---Fgl~-------------~-d~rl~vf~~l 599 (659)
...+||=||.|.|.+...+...+|..++++||+++.+++. |++. -+++ . +.. +.+..+
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 4568999999999999999999999999999999997774 3321 1221 0 111 444322
Q ss_pred c------------chhHHHHHHHhhccCCCCcEEEec
Q 006149 600 F------------CLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 600 ~------------~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
+ ...+.+.+.++| +|+|.+...
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~L---kpgG~l~~~ 139 (218)
T 3mq2_A 106 MPWGSLLRGVLGSSPEMLRGMAAVC---RPGASFLVA 139 (218)
T ss_dssp SCCHHHHHHHHTSSSHHHHHHHHTE---EEEEEEEEE
T ss_pred ccchhhhhhhhccHHHHHHHHHHHc---CCCcEEEEE
Confidence 2 267888999999 999988763
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.014 Score=56.29 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=57.5
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC--------------CCCeeEE-ecccc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ--------------DKSLKVF-NHLFC 601 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~--------------d~rl~vf-~~l~~ 601 (659)
....+||-||.|.|.+...+.+. ..++++||++|.+++.|++.+ ++.. +...|+. .....
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~ 153 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAP 153 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccch
Confidence 34579999999999999999988 469999999999999999876 3320 1112222 11111
Q ss_pred hhHHHHHHHhhccCCCCcEEEecCc
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
..+.+.+.+.| +++|.++....
T Consensus 154 ~~~~~~~~~~L---~pgG~lv~~~~ 175 (210)
T 3lbf_A 154 PEIPTALMTQL---DEGGILVLPVG 175 (210)
T ss_dssp SSCCTHHHHTE---EEEEEEEEEEC
T ss_pred hhhhHHHHHhc---ccCcEEEEEEc
Confidence 12234678889 99998877553
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.029 Score=52.50 Aligned_cols=81 Identities=16% Similarity=0.157 Sum_probs=59.7
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC--------------C-CCeeEE--ecc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ--------------D-KSLKVF--NHL 599 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~--------------d-~rl~vf--~~l 599 (659)
....+||-||.|.|.+...+.... .++++||+++.+++.|++.+ ++.. + ...|+. ...
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 109 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGS 109 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCc
Confidence 345699999999999999999887 69999999999999999864 3310 0 122322 111
Q ss_pred --cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 --FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 --~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
....+.+.+.++| +++|.++...
T Consensus 110 ~~~~~~~l~~~~~~l---~~gG~l~~~~ 134 (192)
T 1l3i_A 110 GGELQEILRIIKDKL---KPGGRIIVTA 134 (192)
T ss_dssp TTCHHHHHHHHHHTE---EEEEEEEEEE
T ss_pred hHHHHHHHHHHHHhc---CCCcEEEEEe
Confidence 1367788888999 9999887754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.048 Score=53.67 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=60.9
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC---------------CCCeeE-Eeccc-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ---------------DKSLKV-FNHLF- 600 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~---------------d~rl~v-f~~l~- 600 (659)
...+||.+|.|.|.+...+.+. ..++++||+++..++.|++.+ ++.. +...|+ +.+.-
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 168 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVRE 168 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSSC
T ss_pred CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECCcC
Confidence 3468999999999999999888 569999999999999999875 4411 112232 23332
Q ss_pred chhHHHHHHHhhccCCCCcEEEecCc
Q 006149 601 CLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 601 ~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
...+.+.+.++| +++|.++....
T Consensus 169 ~~~~l~~~~~~L---~~gG~l~~~~~ 191 (248)
T 2yvl_A 169 PWHYLEKVHKSL---MEGAPVGFLLP 191 (248)
T ss_dssp GGGGHHHHHHHB---CTTCEEEEEES
T ss_pred HHHHHHHHHHHc---CCCCEEEEEeC
Confidence 348889999999 99998877553
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.017 Score=57.51 Aligned_cols=45 Identities=24% Similarity=0.249 Sum_probs=40.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhh
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~ 584 (659)
....+||=||-|.|.+...|...+|+..+++||+++.+++.|++.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~ 89 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDR 89 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHH
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHH
Confidence 345689999999999999999999999999999999999998753
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0017 Score=84.99 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=53.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-----CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-CCCCCcccEEE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-G-----FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-QFMDETFDVIL 139 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g-----~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l-~~~~~sFDvVi 139 (659)
.+..+|||||.|+|..+..+.+. + +.+++..|+|+.+.+.+++++.. ..+..-..|..+. ++...+||+|+
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~--~di~~~~~d~~~~~~~~~~~ydlvi 1316 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ--LHVTQGQWDPANPAPGSLGKADLLV 1316 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH--HTEEEECCCSSCCCC-----CCEEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh--cccccccccccccccCCCCceeEEE
Confidence 35679999999999876554432 1 45799999998777666555422 1222222243332 33456899999
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+..+++...+. ...+.+++++|||||++++.+..
T Consensus 1317 a~~vl~~t~~~-------~~~l~~~~~lL~p~G~l~~~e~~ 1350 (2512)
T 2vz8_A 1317 CNCALATLGDP-------AVAVGNMAATLKEGGFLLLHTLL 1350 (2512)
T ss_dssp EECC---------------------------CCEEEEEEC-
T ss_pred EcccccccccH-------HHHHHHHHHhcCCCcEEEEEecc
Confidence 99999876554 37899999999999999987653
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.015 Score=59.56 Aligned_cols=82 Identities=17% Similarity=0.066 Sum_probs=62.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC-------------------CCCCCee-EE-e--
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-------------------TQDKSLK-VF-N-- 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl-------------------~~d~rl~-vf-~-- 597 (659)
.+.+||-||.|.|.+...|... ..++++||++|.+++.|++.+.- +.+...| |+ .
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~ 159 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSG 159 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHH
T ss_pred CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCc
Confidence 3459999999999999999887 46899999999999999986531 1233445 32 1
Q ss_pred --cccc----hhHHHHHHHhhccCCCCcEEEecCch
Q 006149 598 --HLFC----LQLEEDVNLVLFGLSSESCIKDNSFP 627 (659)
Q Consensus 598 --~l~~----~~f~~~~~~~Lf~~~~~g~~~~n~~~ 627 (659)
+... ..+.+.+.++| +|+|.++...+.
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L---~pgG~l~~~~~~ 192 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHL---EPGGKFLLSLAM 192 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHE---EEEEEEEEEEEC
T ss_pred ccccCCHHHHHHHHHHHHHHc---CCCcEEEEEeec
Confidence 2222 67888999999 999998886643
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.025 Score=55.73 Aligned_cols=81 Identities=10% Similarity=0.033 Sum_probs=58.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC------------------CCCCeeEE-e----
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------------QDKSLKVF-N---- 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~------------------~d~rl~vf-~---- 597 (659)
...+||-||.|.|.+...+....+. ++++||+++.+++.|++.+.-. ++...|+. .
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCC-eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence 3469999999999999999765543 8999999999999999977211 11233333 1
Q ss_pred -cccc------hhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 -HLFC------LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 -~l~~------~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+.-. ..+++.++++| +|+|.+..-.
T Consensus 139 ~~~~~~~~~~~~~~l~~~~r~L---kpgG~l~~~~ 170 (236)
T 1zx0_A 139 LSEETWHTHQFNFIKNHAFRLL---KPGGVLTYCN 170 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHE---EEEEEEEECC
T ss_pred cchhhhhhhhHHHHHHHHHHhc---CCCeEEEEEe
Confidence 0101 14578899999 9999988543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.022 Score=55.68 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=57.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC---------------CCCCeeEE-ecccchhH
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---------------QDKSLKVF-NHLFCLQL 604 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~---------------~d~rl~vf-~~l~~~~f 604 (659)
...+||-||.|.|.+...+.... .++++||+++.+++.|++.+.-. .+...|+. ..-....+
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~ 147 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTL 147 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSC
T ss_pred CCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHHH
Confidence 44699999999999999999886 69999999999999999886421 11223332 11111223
Q ss_pred HHHHHHhhccCCCCcEEEecC
Q 006149 605 EEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 605 ~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+.+.++| +++|.++...
T Consensus 148 ~~~~~~~L---~pgG~l~~~~ 165 (231)
T 1vbf_A 148 LCKPYEQL---KEGGIMILPI 165 (231)
T ss_dssp CHHHHHTE---EEEEEEEEEE
T ss_pred HHHHHHHc---CCCcEEEEEE
Confidence 35788899 9999877644
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.012 Score=60.77 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=61.5
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC---------------CCCCeeEE-----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT---------------QDKSLKVF----- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~---------------~d~rl~vf----- 596 (659)
....+||-||.|.|.+...+...+ ..++++||+++.+++.|++.+ |+. ++...|+.
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 194 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNES 194 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESC
T ss_pred CCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCc
Confidence 345799999999999999998875 469999999999999999863 222 12233433
Q ss_pred -ecccchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 -NHLFCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 -~~l~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.|+-...+++.+.++| +|+|.++.
T Consensus 195 l~~~~~~~~l~~~~~~L---kpgG~l~~ 219 (312)
T 3vc1_A 195 TMYVDLHDLFSEHSRFL---KVGGRYVT 219 (312)
T ss_dssp GGGSCHHHHHHHHHHHE---EEEEEEEE
T ss_pred hhhCCHHHHHHHHHHHc---CCCcEEEE
Confidence 3444578899999999 99997765
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.024 Score=60.63 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=66.0
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC----------------CCCCeeEE-e----
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT----------------QDKSLKVF-N---- 597 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~----------------~d~rl~vf-~---- 597 (659)
..+||=||.|.|.+...+...+|..+|++||+++.+++.|++-+ |+. ++.+.|+. .
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~nppf 302 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF 302 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECCCC
T ss_pred CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECCCc
Confidence 37999999999999999999999999999999999999999754 221 11233432 1
Q ss_pred c----c---cchhHHHHHHHhhccCCCCcEEEe--cCchHHHHHHHhh
Q 006149 598 H----L---FCLQLEEDVNLVLFGLSSESCIKD--NSFPEAAVQLGKL 636 (659)
Q Consensus 598 ~----l---~~~~f~~~~~~~Lf~~~~~g~~~~--n~~~~~~~~l~~~ 636 (659)
| + ...++.+.+.++| +++|.+.. |........++++
T Consensus 303 h~~~~~~~~~~~~~l~~~~~~L---kpgG~l~iv~n~~~~~~~~l~~~ 347 (375)
T 4dcm_A 303 HQQHALTDNVAWEMFHHARRCL---KINGELYIVANRHLDYFHKLKKI 347 (375)
T ss_dssp -------CCHHHHHHHHHHHHE---EEEEEEEEEEETTSCHHHHHHHH
T ss_pred ccCcccCHHHHHHHHHHHHHhC---CCCcEEEEEEECCcCHHHHHHHh
Confidence 0 1 1236789999999 99997655 6544334444443
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.012 Score=56.98 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=61.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeE--------------Eec----
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKV--------------FNH---- 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~v--------------f~~---- 598 (659)
.+.+||-||.|.|..+.++...+| ..++++||+++.+++.|++.+ ++. +++++ |+-
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~fD~v~~~ 133 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI--DRVELQVGDPLGIAAGQRDIDILFMD 133 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG--GGEEEEESCHHHHHTTCCSEEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC--ceEEEEEecHHHHhccCCCCCEEEEc
Confidence 457999999999999999999887 789999999999999999876 321 11110 322
Q ss_pred ---ccchhHHHHHHHhhccCCCCcEEEe
Q 006149 599 ---LFCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 599 ---l~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
-....+++.+.++| +++|+++.
T Consensus 134 ~~~~~~~~~l~~~~~~L---kpgG~lv~ 158 (210)
T 3c3p_A 134 CDVFNGADVLERMNRCL---AKNALLIA 158 (210)
T ss_dssp TTTSCHHHHHHHHGGGE---EEEEEEEE
T ss_pred CChhhhHHHHHHHHHhc---CCCeEEEE
Confidence 23457788899999 99998876
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.02 Score=55.86 Aligned_cols=82 Identities=9% Similarity=0.045 Sum_probs=58.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhcC---C-----C--------------CCCCeeEE-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFG---F-----T--------------QDKSLKVF- 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~Fg---l-----~--------------~d~rl~vf- 596 (659)
...+||-||.|.|.+...+.+.+ |..++++||+++.+++.|++.+. + . .+...|+.
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 156 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 156 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEE
Confidence 34699999999999999888875 66799999999999999987652 1 1 01112322
Q ss_pred ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 597 NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 597 ~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.......+.+.+.++| +++|.++...
T Consensus 157 ~~~~~~~~~~~~~~~L---kpgG~lv~~~ 182 (226)
T 1i1n_A 157 VGAAAPVVPQALIDQL---KPGGRLILPV 182 (226)
T ss_dssp ECSBBSSCCHHHHHTE---EEEEEEEEEE
T ss_pred ECCchHHHHHHHHHhc---CCCcEEEEEE
Confidence 1112234557888899 9999887754
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.026 Score=57.33 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=61.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc--------------------CC----CCCCCeeEE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF--------------------GF----TQDKSLKVF 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F--------------------gl----~~d~rl~vf 596 (659)
.+.+||=||.|.|.++..|.... .++++||++|.+++.|++.. .+ ..+...|+.
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V 134 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 134 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence 45799999999999999998874 48999999999999997632 11 123345544
Q ss_pred -------eccc--------chhHHHHHHHhhccCCCCcEEEecCc
Q 006149 597 -------NHLF--------CLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 597 -------~~l~--------~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
.|+. ...+++.+.++| +|+|.+.....
T Consensus 135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~L---kpgG~l~~~~~ 176 (293)
T 3thr_A 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMV---RPGGLLVIDHR 176 (293)
T ss_dssp EECTTCGGGSCCSSSSSHHHHHHHHHHHHTE---EEEEEEEEEEE
T ss_pred EEcChHHhhcCccccCHHHHHHHHHHHHHHc---CCCeEEEEEeC
Confidence 2333 357888999999 99998887553
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.015 Score=59.09 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=41.0
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
+.+||=||.|.|.+...+...+|..++++||+++..+++|++-+
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~ 153 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNA 153 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHH
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999765
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.023 Score=57.58 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=62.6
Q ss_pred CCCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhc---CCCC--------------CCCeeEE-ecc-c
Q 006149 541 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQ--------------DKSLKVF-NHL-F 600 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~F---gl~~--------------d~rl~vf-~~l-~ 600 (659)
...+||-+|.|.|.+...+... .|..++++||++|..++.|++.+ ++.+ +...|+. .++ .
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~~~~ 191 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPD 191 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCSC
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEECCcC
Confidence 3468999999999999999988 67889999999999999999875 4311 1123322 223 2
Q ss_pred chhHHHHHHHhhccCCCCcEEEecC
Q 006149 601 CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 601 ~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
...+.+.+.++| +++|.++...
T Consensus 192 ~~~~l~~~~~~L---~pgG~l~~~~ 213 (277)
T 1o54_A 192 PWNYIDKCWEAL---KGGGRFATVC 213 (277)
T ss_dssp GGGTHHHHHHHE---EEEEEEEEEE
T ss_pred HHHHHHHHHHHc---CCCCEEEEEe
Confidence 348889999999 9999887644
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.023 Score=59.02 Aligned_cols=85 Identities=14% Similarity=0.085 Sum_probs=60.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCC--------------CCCeeEE-ecccc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQ--------------DKSLKVF-NHLFC 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~--------------d~rl~vf-~~l~~ 601 (659)
...+||-||.|.|.++..+.+..+ ..+|++||+++.+++.|++.+ |+.. +...|+. ..-..
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~ 154 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGV 154 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCCH
Confidence 346999999999999999998876 478999999999999999876 3321 1122322 11111
Q ss_pred hhHHHHHHHhhccCCCCcEEEecCchH
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNSFPE 628 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~~~~ 628 (659)
..+.+.+.++| +|+|.++..+.+.
T Consensus 155 ~~~~~~~~~~L---kpgG~lvi~~~~~ 178 (317)
T 1dl5_A 155 DEVPETWFTQL---KEGGRVIVPINLK 178 (317)
T ss_dssp SCCCHHHHHHE---EEEEEEEEEBCBG
T ss_pred HHHHHHHHHhc---CCCcEEEEEECCC
Confidence 12236788899 9999988876443
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.015 Score=59.89 Aligned_cols=83 Identities=11% Similarity=-0.030 Sum_probs=61.9
Q ss_pred CCCCeEEEEccCcchHHHHHH-hhCCCccEEEEecChhHHHHHHhhcCCCC-C----------------CCeeEE-----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYFGFTQ-D----------------KSLKVF----- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~-~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-d----------------~rl~vf----- 596 (659)
....+||-||.|.|.+...+. ...|..++++||++|.+++.|++.+.-.. . ...|+.
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~ 196 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGL 196 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCSS
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECCh
Confidence 445789999999999999885 56788999999999999999998874211 1 222332
Q ss_pred -ecccch----hHHHHHHHhhccCCCCcEEEecC
Q 006149 597 -NHLFCL----QLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 597 -~~l~~~----~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.|+-.. .+.+.+.++| +|+|.++...
T Consensus 197 ~~~~~~~~~~~~~l~~~~~~L---kpgG~l~i~~ 227 (305)
T 3ocj_A 197 NIYEPDDARVTELYRRFWQAL---KPGGALVTSF 227 (305)
T ss_dssp GGGCCCHHHHHHHHHHHHHHE---EEEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHhc---CCCeEEEEEe
Confidence 222222 3689999999 9999888644
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.045 Score=55.85 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=56.8
Q ss_pred CCCeEEEEccCcchHHH----HHHhhCCCccE--EEEecChhHHHHHHhhcC----CC----------------------
Q 006149 541 KSVKAVVIGLGAGLLPM----FLHECMPFVGI--EAVELDLTMLNLAEDYFG----FT---------------------- 588 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~----~l~~~~p~~~i--~~VEiDp~V~~vA~~~Fg----l~---------------------- 588 (659)
.+.+||-||.|.|.+.. .+...+|.+++ ++||+++.+++.|++.+. ++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 45699999999997553 34445577755 999999999999987651 11
Q ss_pred CCCCeeEE------eccc-chhHHHHHHHhhccCCCCcEEEe
Q 006149 589 QDKSLKVF------NHLF-CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 589 ~d~rl~vf------~~l~-~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
++...|+. .|+- -..+...++++| +|+|.++.
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~L---kpgG~l~i 170 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLL---GTNAKMLI 170 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCHHHHHHHHHHTE---EEEEEEEE
T ss_pred CCCceeEEEEeeeeeecCCHHHHHHHHHHHc---CCCcEEEE
Confidence 12334443 3342 356889999999 99998765
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.027 Score=56.93 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=47.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR 113 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~ 113 (659)
..+...+.+... .+++.|||+.||+|..+......|. +++|+|+++.+++.++++...
T Consensus 199 ~~l~~~~i~~~~----~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 199 RDLIERIIRASS----NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp HHHHHHHHHHHC----CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHh
Confidence 345555555554 3789999999999999999988885 999999999999988877643
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.037 Score=58.32 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=57.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC--------------CCCeeEE------e
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ--------------DKSLKVF------N 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~--------------d~rl~vf------~ 597 (659)
...+||-||.|.|.+..++.+. +..+|++||+++ +++.|++.+ |+.+ .++.|+. .
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 127 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY 127 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBT
T ss_pred CcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchh
Confidence 4579999999999999999886 556999999997 778888764 3321 1233433 2
Q ss_pred cccc---hhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 HLFC---LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l~~---~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
|+.. .+++..++++| +|+|.++.+.
T Consensus 128 ~~~~~~~~~~l~~~~~~L---kpgG~li~~~ 155 (348)
T 2y1w_A 128 MLFNERMLESYLHAKKYL---KPSGNMFPTI 155 (348)
T ss_dssp TBTTTSHHHHHHHGGGGE---EEEEEEESCE
T ss_pred cCChHHHHHHHHHHHhhc---CCCeEEEEec
Confidence 2322 35566778888 9999987653
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.035 Score=56.01 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=61.9
Q ss_pred CCCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhc----C-CCC---------------CCCeeE-Eec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF----G-FTQ---------------DKSLKV-FNH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~F----g-l~~---------------d~rl~v-f~~ 598 (659)
...+||-||.|.|.+...+.+. .|..++++||++|.+++.|++.+ | +.. +...|+ +.+
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~ 178 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLD 178 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEE
T ss_pred CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEEC
Confidence 3468999999999999999885 57789999999999999999876 4 111 112232 223
Q ss_pred c-cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 L-FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l-~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+ ...++.+.+.++| +++|.++..+
T Consensus 179 ~~~~~~~l~~~~~~L---~pgG~l~~~~ 203 (280)
T 1i9g_A 179 MLAPWEVLDAVSRLL---VAGGVLMVYV 203 (280)
T ss_dssp SSCGGGGHHHHHHHE---EEEEEEEEEE
T ss_pred CcCHHHHHHHHHHhC---CCCCEEEEEe
Confidence 3 2348899999999 9999887755
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.033 Score=57.81 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=60.0
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC--------------CCCCeeEE------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT--------------QDKSLKVF------ 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~d~rl~vf------ 596 (659)
....+||-||.|.|.+...+...+|..+++++|++ .+++.|++.+ ++. .....|++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l 242 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFL 242 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCG
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchh
Confidence 34579999999999999999999999999999999 9999998864 221 11124443
Q ss_pred ecc---cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHL---FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l---~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++ ....+.+.++++| +|+|.+..
T Consensus 243 ~~~~~~~~~~~l~~~~~~L---~pgG~l~i 269 (335)
T 2r3s_A 243 HHFDVATCEQLLRKIKTAL---AVEGKVIV 269 (335)
T ss_dssp GGSCHHHHHHHHHHHHHHE---EEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhC---CCCcEEEE
Confidence 122 1247788899999 99995543
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.013 Score=61.99 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=60.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC----------C---CCeeEE------e
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ----------D---KSLKVF------N 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~----------d---~rl~vf------~ 597 (659)
....+||-||.|.|.+...+...+|+.+++++|+ |.+++.|++.+ ++.. + ...|++ .
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~ 259 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLL 259 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEecccc
Confidence 3467999999999999999999999999999999 99999999864 2210 0 113433 1
Q ss_pred cccc---hhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HLFC---LQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l~~---~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
++-. ..+.+.++++| +|+|.+..
T Consensus 260 ~~~~~~~~~~l~~~~~~L---~pgG~l~i 285 (374)
T 1qzz_A 260 NWSDEDALTILRGCVRAL---EPGGRLLV 285 (374)
T ss_dssp GSCHHHHHHHHHHHHHHE---EEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhc---CCCcEEEE
Confidence 2222 36888999999 99996554
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.032 Score=59.09 Aligned_cols=76 Identities=9% Similarity=0.029 Sum_probs=57.5
Q ss_pred hHHHHHHHHhhCCCC---CCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecC
Q 006149 51 PQLRDPLISLIGAPT---SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~---~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~ 126 (659)
+.++..+.+.+.... ..++..|||||.|.|.+|..|++. ...+|+++++.+.++..+.+.. ..++++++.+|+.
T Consensus 38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~--~~~~l~ii~~D~l 115 (353)
T 1i4w_A 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF--EGSPLQILKRDPY 115 (353)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT--TTSSCEEECSCTT
T ss_pred HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc--cCCCEEEEECCcc
Confidence 355555666664300 003589999999999999999986 3458999999999998776665 3578999999996
Q ss_pred CC
Q 006149 127 SM 128 (659)
Q Consensus 127 ~l 128 (659)
++
T Consensus 116 ~~ 117 (353)
T 1i4w_A 116 DW 117 (353)
T ss_dssp CH
T ss_pred ch
Confidence 65
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.025 Score=53.84 Aligned_cols=81 Identities=14% Similarity=0.077 Sum_probs=60.0
Q ss_pred CCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhc---CCC----------------CCCCeeEE-ecc-
Q 006149 542 SVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFT----------------QDKSLKVF-NHL- 599 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~F---gl~----------------~d~rl~vf-~~l- 599 (659)
..+||-+|.|.|.+...+...+ |..++++||+++.+++.|++.+ |+. .+...|+. ...
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 4699999999999999998875 6679999999999999999875 221 01122322 111
Q ss_pred c--------------chhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 F--------------CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ~--------------~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+ ...+.+.+.++| +++|.++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~L---k~gG~l~~~~ 139 (197)
T 3eey_A 103 YLPSGDHSISTRPETTIQALSKAMELL---VTGGIITVVI 139 (197)
T ss_dssp BCTTSCTTCBCCHHHHHHHHHHHHHHE---EEEEEEEEEE
T ss_pred cccCcccccccCcccHHHHHHHHHHhC---cCCCEEEEEE
Confidence 1 136889999999 9999887654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.048 Score=51.07 Aligned_cols=81 Identities=12% Similarity=0.177 Sum_probs=60.0
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC-----------C-CCCCeeEE--e-ccc----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-----------T-QDKSLKVF--N-HLF---- 600 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl-----------~-~d~rl~vf--~-~l~---- 600 (659)
+...+||-||.|.|.+...+... +.++++||+++.+++.|++.+.- + ++...|+. . .++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 34579999999999999999887 46899999999999999987621 1 12234443 1 111
Q ss_pred ---chhHHHHHHHhhccCCCCcEEEecC
Q 006149 601 ---CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 601 ---~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
...+.+.+.++| +++|.+....
T Consensus 123 ~~~~~~~l~~~~~~l---~~~G~l~~~~ 147 (195)
T 3cgg_A 123 EDGREPALANIHRAL---GADGRAVIGF 147 (195)
T ss_dssp HHHHHHHHHHHHHHE---EEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHh---CCCCEEEEEe
Confidence 156788889999 9999887743
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.014 Score=61.03 Aligned_cols=73 Identities=12% Similarity=0.081 Sum_probs=54.7
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~ 127 (659)
.+.+...+.+++.. .++..++|..||+|..+..+++. + .+.|+|+|.++.+++.+ ++. ...+++++++++.+
T Consensus 42 ~pVLl~Evl~~L~i---~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A-~rL--~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 42 TTVLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVA-KTI--DDPRFSIIHGPFSA 115 (347)
T ss_dssp CCTTTHHHHHHTCC---CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHH-TTC--CCTTEEEEESCGGG
T ss_pred ccccHHHHHHhhCC---CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHH-Hhh--cCCcEEEEeCCHHH
Confidence 34455556666654 68899999999999999999876 3 46899999999999866 332 23567777776666
Q ss_pred C
Q 006149 128 M 128 (659)
Q Consensus 128 l 128 (659)
+
T Consensus 116 l 116 (347)
T 3tka_A 116 L 116 (347)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.034 Score=55.73 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=61.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC-----------------CCCeeEE-ec-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ-----------------DKSLKVF-NH- 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~-----------------d~rl~vf-~~- 598 (659)
...+||=||-|.|.+...+...+|+.+|++||+++..++.|++-. |+.. +...|+. ..
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a 159 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA 159 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence 457999999999999999999999999999999999999998764 4431 1223332 11
Q ss_pred c-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 599 L-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 599 l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+ --..+.+.+.++| +++|.++.
T Consensus 160 ~~~~~~ll~~~~~~L---kpgG~l~~ 182 (249)
T 3g89_A 160 VAPLCVLSELLLPFL---EVGGAAVA 182 (249)
T ss_dssp SCCHHHHHHHHGGGE---EEEEEEEE
T ss_pred cCCHHHHHHHHHHHc---CCCeEEEE
Confidence 1 1256778888999 99997654
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.061 Score=56.69 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=54.0
Q ss_pred CeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC---CCCcccEEEeccc
Q 006149 70 PQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF---MDETFDVILDKGG 143 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~---~~~sFDvVi~~g~ 143 (659)
.+|||+.||.|.++..+...| +..|.++|+++.+++..+.. .+...++++|+.++.. +...+|+|+....
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N----~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpP 77 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN----FPHTQLLAKTIEGITLEEFDRLSFDMILMSPP 77 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH----CTTSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHh----ccccccccCCHHHccHhHcCcCCcCEEEEcCC
Confidence 589999999999999999888 55799999999888755433 2455678899988742 2126899997554
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.031 Score=59.27 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=59.4
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-------C-CCCCCeeEE------ecccc---h
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-------F-TQDKSLKVF------NHLFC---L 602 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-------l-~~d~rl~vf------~~l~~---~ 602 (659)
+...+||=||.|.|.+...+.+.+|.++++++|+ |.+++.|+++=+ + .+-+..|++ .++-. .
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~ 286 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCI 286 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHH
Confidence 3467999999999999999999999999999999 999999986310 0 011124444 22221 2
Q ss_pred hHHHHHHHhhccCCCCcEEEe
Q 006149 603 QLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.+.+.++++| +|+|.+..
T Consensus 287 ~~l~~~~~~L---~pgG~l~i 304 (372)
T 1fp1_D 287 EFLSNCHKAL---SPNGKVII 304 (372)
T ss_dssp HHHHHHHHHE---EEEEEEEE
T ss_pred HHHHHHHHhc---CCCCEEEE
Confidence 7889999999 99996654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.016 Score=58.11 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=40.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
...+||=||.|.|.++..+....+. +|++|||||.+++.|++.+
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~ 92 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSV 92 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHH
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHH
Confidence 4579999999999999999998776 9999999999999999876
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.033 Score=53.82 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=60.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-----------CC-CCCCeeEE------eccc-c
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----------FT-QDKSLKVF------NHLF-C 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-----------l~-~d~rl~vf------~~l~-~ 601 (659)
.+.+||-||.|.|.+...+... + .++++||+++.+++.|++.+. ++ ++...|+. .|+. .
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~ 109 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP 109 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH
T ss_pred CCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCCH
Confidence 4579999999999999999988 5 799999999999999997641 11 12344543 3332 3
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+.+.+.++| +++|.+....
T Consensus 110 ~~~l~~~~~~L---~~gG~l~~~~ 130 (230)
T 3cc8_A 110 WAVIEKVKPYI---KQNGVILASI 130 (230)
T ss_dssp HHHHHHTGGGE---EEEEEEEEEE
T ss_pred HHHHHHHHHHc---CCCCEEEEEe
Confidence 56788899999 9999877643
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.021 Score=56.45 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=59.8
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC--------------CCCCeeEE------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT--------------QDKSLKVF------ 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~d~rl~vf------ 596 (659)
....+||-||.|.|.+...+....+ ++++||+++.+++.|++.+ +++ ++...|+.
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 97 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAA 97 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCch
Confidence 4457999999999999999998874 8999999999999998865 221 12233433
Q ss_pred ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.|+ ....+...++++| +|+|.+..
T Consensus 98 ~~~~~~~~~l~~~~~~L---kpgG~l~~ 122 (239)
T 1xxl_A 98 HHFSDVRKAVREVARVL---KQDGRFLL 122 (239)
T ss_dssp GGCSCHHHHHHHHHHHE---EEEEEEEE
T ss_pred hhccCHHHHHHHHHHHc---CCCcEEEE
Confidence 222 2357788999999 99997765
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.036 Score=58.25 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=59.7
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-------C-CCCCCeeEE------eccc---ch
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-------F-TQDKSLKVF------NHLF---CL 602 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-------l-~~d~rl~vf------~~l~---~~ 602 (659)
+...+||-||.|.|.+...+.+.+|+.+++++|+ |.+++.|+++=+ + .+-+..|++ .++- ..
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~ 265 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCL 265 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHH
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHHH
Confidence 3457999999999999999999999999999999 999999986311 0 011124444 2222 12
Q ss_pred hHHHHHHHhhccCCC---CcEEEe
Q 006149 603 QLEEDVNLVLFGLSS---ESCIKD 623 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~---~g~~~~ 623 (659)
.+.+.++++| +| +|.+..
T Consensus 266 ~~l~~~~~~L---~p~~~gG~l~i 286 (352)
T 1fp2_A 266 RILKKCKEAV---TNDGKRGKVTI 286 (352)
T ss_dssp HHHHHHHHHH---SGGGCCCEEEE
T ss_pred HHHHHHHHhC---CCCCCCcEEEE
Confidence 7888999999 99 996544
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.066 Score=56.62 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=60.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC---CC-----------CC-----CCeeEE--ec-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---FT-----------QD-----KSLKVF--NH- 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg---l~-----------~d-----~rl~vf--~~- 598 (659)
.+.+||=||.|.|.+...+.+.+|..+++++|+ |.+++.|++.+. +. ++ ...|++ .+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~v 257 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQF 257 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESC
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEech
Confidence 467999999999999999999999999999999 999999998742 10 10 133443 11
Q ss_pred ---cc---chhHHHHHHHhhccCCCCcEEEe
Q 006149 599 ---LF---CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 599 ---l~---~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+. ...+.+.++++| +|+|.+..
T Consensus 258 lh~~~~~~~~~~l~~~~~~L---~pgG~l~i 285 (363)
T 3dp7_A 258 LDCFSEEEVISILTRVAQSI---GKDSKVYI 285 (363)
T ss_dssp STTSCHHHHHHHHHHHHHHC---CTTCEEEE
T ss_pred hhhCCHHHHHHHHHHHHHhc---CCCcEEEE
Confidence 21 236788899999 99996654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.035 Score=54.16 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=39.4
Q ss_pred CCCeEEEEccC-cchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlG-gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
...+||=||.| .|.+...+.... ..++++||+||.+++.|++.+
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~ 99 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNI 99 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHH
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHH
Confidence 45799999999 999999999886 579999999999999999764
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.057 Score=56.10 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=58.7
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC---CC-------------CCCCeeEE--ec----cc
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---FT-------------QDKSLKVF--NH----LF 600 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg---l~-------------~d~rl~vf--~~----l~ 600 (659)
.+||=||.|.|.+...+...+|..+++++|+ |.+++.|++.+. +. .....|++ .+ +.
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~ 247 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLD 247 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCC
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCC
Confidence 7999999999999999999999999999999 999999988641 10 01123443 11 21
Q ss_pred ---chhHHHHHHHhhccCCCCcEEEe
Q 006149 601 ---CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 601 ---~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
...+.+.++++| +|+|.+..
T Consensus 248 ~~~~~~~l~~~~~~L---~pgG~l~i 270 (334)
T 2ip2_A 248 EAASLRLLGNCREAM---AGDGRVVV 270 (334)
T ss_dssp HHHHHHHHHHHHHHS---CTTCEEEE
T ss_pred HHHHHHHHHHHHHhc---CCCCEEEE
Confidence 227788899999 99996654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.035 Score=59.31 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=56.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC--------------CCCeeEE-e-----c
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ--------------DKSLKVF-N-----H 598 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~--------------d~rl~vf-~-----~ 598 (659)
.+.||-||-|.|.|+++..+.... +|.+||.++ +++.|++.. |+.+ .++.|+. . .
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~-~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGAR-RVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS-EEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCC-EEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 368999999999999999987654 899999997 678888764 3321 1244554 1 1
Q ss_pred cc----chhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 LF----CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l~----~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
|. -..+.....+.| +|+|++..+.
T Consensus 162 l~~e~~l~~~l~a~~r~L---kp~G~~iP~~ 189 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWL---KEGGLLLPAS 189 (376)
T ss_dssp BTTTCSHHHHHHHHHHHE---EEEEEEESCE
T ss_pred ccccchhhhHHHHHHhhC---CCCceECCcc
Confidence 22 234455567888 9999988765
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.018 Score=56.87 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=57.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecC-hhHHHHH---Hhhc---CCCC------C-CCe-----eEEecc--
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELD-LTMLNLA---EDYF---GFTQ------D-KSL-----KVFNHL-- 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiD-p~V~~vA---~~~F---gl~~------d-~rl-----~vf~~l-- 599 (659)
...+||=||-|.|.+...+....|+.++++||++ +.|+++| ++-. +++. | ..+ +++..+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 3468999999999999999988899999999999 8888888 5432 2220 0 000 222111
Q ss_pred -------------cchhHHHHHHHhhccCCCCcEEEe
Q 006149 600 -------------FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 600 -------------~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
...+++..++++| +|+|.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~L---kpGG~l~i 137 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLA---KKEAHFEF 137 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTE---EEEEEEEE
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhc---CCCcEEEE
Confidence 1245788999999 99998876
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.031 Score=59.67 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=61.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhc--------C-C---------------------C-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF--------G-F---------------------T- 588 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~F--------g-l---------------------~- 588 (659)
...+||=||.|.|.++..|...+ |..++++||++|.+++.|++.+ | + +
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 45799999999999999998876 7889999999999999999864 2 1 0
Q ss_pred CCCCeeEE------ecc-cchhHHHHHHHhhccCCCCcEEEec
Q 006149 589 QDKSLKVF------NHL-FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 589 ~d~rl~vf------~~l-~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
++...|+. .++ ....+.+.+.++| +|+|.+...
T Consensus 163 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~L---kpgG~l~i~ 202 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLSTNKLALFKEIHRVL---RDGGELYFS 202 (383)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHE---EEEEEEEEE
T ss_pred CCCCEEEEEEccchhcCCCHHHHHHHHHHHc---CCCCEEEEE
Confidence 11234433 122 2356889999999 999987763
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.015 Score=57.91 Aligned_cols=81 Identities=10% Similarity=0.050 Sum_probs=57.4
Q ss_pred CCeEEEEccCcchHHHHHHhh----CCCccEEEEecChhHHHHHHhhcC-------CCCC----C-----CeeEE----e
Q 006149 542 SVKAVVIGLGAGLLPMFLHEC----MPFVGIEAVELDLTMLNLAEDYFG-------FTQD----K-----SLKVF----N 597 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~----~p~~~i~~VEiDp~V~~vA~~~Fg-------l~~d----~-----rl~vf----~ 597 (659)
+.+||-||.|.|.++..|.+. .|..+|++||++|.++++|+..-. -..+ + ..|+. .
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 479999999999999998887 688899999999999999874310 0001 0 12221 1
Q ss_pred cccchhHHHHHHH-hhccCCCCcEEEecC
Q 006149 598 HLFCLQLEEDVNL-VLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l~~~~f~~~~~~-~Lf~~~~~g~~~~n~ 625 (659)
|.....++..+.+ +| +++|.++...
T Consensus 162 ~~~~~~~l~~~~r~~L---kpGG~lv~~d 187 (236)
T 2bm8_A 162 HANTFNIMKWAVDHLL---EEGDYFIIED 187 (236)
T ss_dssp CSSHHHHHHHHHHHTC---CTTCEEEECS
T ss_pred hHhHHHHHHHHHHhhC---CCCCEEEEEe
Confidence 2223556777776 89 9999998853
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.022 Score=52.78 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=60.9
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC---------CCCCeeEE------ecc-cchh
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---------QDKSLKVF------NHL-FCLQ 603 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~---------~d~rl~vf------~~l-~~~~ 603 (659)
....+||-||.|.|.+...+..... ++++||+++.+++.|++...-. ++...|+. .|+ ....
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~ 93 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQH 93 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSGGGSCTTCEEEEEEESCSTTCSCHHH
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCCCCCCCCceEEEEEccchhcccCHHH
Confidence 3456999999999999999998873 9999999999999999872100 12334443 233 2357
Q ss_pred HHHHHHHhhccCCCCcEEEecC
Q 006149 604 LEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 604 f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+.+.+.++| +++|.+....
T Consensus 94 ~l~~~~~~L---~pgG~l~~~~ 112 (170)
T 3i9f_A 94 VISEVKRIL---KDDGRVIIID 112 (170)
T ss_dssp HHHHHHHHE---EEEEEEEEEE
T ss_pred HHHHHHHhc---CCCCEEEEEE
Confidence 788999999 9999887643
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.033 Score=59.20 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=58.6
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC--------CCCCCeeEE--e----ccc---ch
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF--------TQDKSLKVF--N----HLF---CL 602 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl--------~~d~rl~vf--~----~l~---~~ 602 (659)
....+||=||.|.|.+...|.+.+|+++++++|+ |.|++.|++.-++ .+-+.-|++ . ++. ..
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~ 280 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCL 280 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHH
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHH
Confidence 3457999999999999999999999999999999 9999998764100 000111444 1 221 23
Q ss_pred hHHHHHHHhhccCCCCcEEEe
Q 006149 603 QLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.+.+.++++| +|+|.+..
T Consensus 281 ~~l~~~~~~L---~pgG~l~i 298 (368)
T 3reo_A 281 KLLKNCYAAL---PDHGKVIV 298 (368)
T ss_dssp HHHHHHHHHS---CTTCEEEE
T ss_pred HHHHHHHHHc---CCCCEEEE
Confidence 6788899999 99996654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=95.32 E-value=0.02 Score=55.92 Aligned_cols=45 Identities=7% Similarity=0.125 Sum_probs=40.9
Q ss_pred CCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+.+||-||.|.|.++.++.+.++ ..+|++||++|.++++|++.+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~ 103 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQML 103 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHH
Confidence 457999999999999999998765 789999999999999999975
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.019 Score=56.21 Aligned_cols=82 Identities=10% Similarity=0.109 Sum_probs=58.1
Q ss_pred CCeEEEEccCcchHHHHHHhhCC------CccEEEEecChhHHHHHHhhcC----------------------CCCCCCe
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMP------FVGIEAVELDLTMLNLAEDYFG----------------------FTQDKSL 593 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p------~~~i~~VEiDp~V~~vA~~~Fg----------------------l~~d~rl 593 (659)
..+||-||.|.|.+...+.+..+ ..++++||++|.+++.|++.+. +++....
T Consensus 85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 164 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPY 164 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSE
T ss_pred CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcCCCc
Confidence 46899999999999999888654 3589999999999999987642 1111223
Q ss_pred eEE-ecccchhHHHHHHHhhccCCCCcEEEecCc
Q 006149 594 KVF-NHLFCLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 594 ~vf-~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
|+. .......+.+.+.+.| +++|.++....
T Consensus 165 D~I~~~~~~~~~~~~~~~~L---kpgG~lvi~~~ 195 (227)
T 1r18_A 165 NAIHVGAAAPDTPTELINQL---ASGGRLIVPVG 195 (227)
T ss_dssp EEEEECSCBSSCCHHHHHTE---EEEEEEEEEES
T ss_pred cEEEECCchHHHHHHHHHHh---cCCCEEEEEEe
Confidence 332 1111233447788899 99998887664
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.018 Score=54.15 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=38.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
...+||=||.|.|.+..++... ..+|++||++|.+++.|++.+
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~ 64 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRL 64 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHH
Confidence 3468999999999999999987 579999999999999999876
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.031 Score=56.19 Aligned_cols=44 Identities=7% Similarity=-0.068 Sum_probs=38.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
...+||.+|-|.|.+..+|... +.+|++||++|.+++.|++-.+
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~ 111 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQN 111 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcc
Confidence 4579999999999999999987 3589999999999999987654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.025 Score=57.84 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=37.4
Q ss_pred CCCeEEEEccCcch----HHHHHHhhCC----CccEEEEecChhHHHHHHh
Q 006149 541 KSVKAVVIGLGAGL----LPMFLHECMP----FVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 541 ~~~~vLiiGlGgG~----l~~~l~~~~p----~~~i~~VEiDp~V~~vA~~ 583 (659)
.+.+|+.+|.|.|. +++.|...+| +.+|+++|||+.+++.|++
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~ 155 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS 155 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHh
Confidence 35799999999997 8888888755 4689999999999999986
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.028 Score=55.03 Aligned_cols=82 Identities=18% Similarity=0.111 Sum_probs=60.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-----C----------CCCCCeeEE-------ec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----F----------TQDKSLKVF-------NH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-----l----------~~d~rl~vf-------~~ 598 (659)
.+.+||-||.|.|.+...+.... .++++||+++.+++.|++.+. + +.....|+. .|
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 55799999999999999998874 589999999999999998752 1 011233332 23
Q ss_pred cc----chhHHHHHHHhhccCCCCcEEEecCch
Q 006149 599 LF----CLQLEEDVNLVLFGLSSESCIKDNSFP 627 (659)
Q Consensus 599 l~----~~~f~~~~~~~Lf~~~~~g~~~~n~~~ 627 (659)
+. ...+.+.++++| +|+|.++.....
T Consensus 115 ~~~~~~~~~~l~~~~~~L---~pgG~l~~~~~~ 144 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHL---KEGGVFIFDINS 144 (246)
T ss_dssp CCSHHHHHHHHHHHHTTE---EEEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHhc---CCCcEEEEEecC
Confidence 31 245677888899 999998876543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.07 Score=52.34 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=60.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----------CC--------CCeeEE-ecccc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----------QD--------KSLKVF-NHLFC 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----------~d--------~rl~vf-~~l~~ 601 (659)
...+||-||.|.|.+..++...+|..+|++||++|.+++.|++..... .+ ...|+. .++..
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~ 153 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQ 153 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEECCCS
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEecCC
Confidence 346899999999999999999988779999999999999887654211 11 123442 33322
Q ss_pred ----hhHHHHHHHhhccCCCCcEEEe
Q 006149 602 ----LQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 602 ----~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
..+.+.+.++| +|+|.+..
T Consensus 154 ~~~~~~~l~~~~~~L---kpgG~l~i 176 (230)
T 1fbn_A 154 PNQAEILIKNAKWFL---KKGGYGMI 176 (230)
T ss_dssp TTHHHHHHHHHHHHE---EEEEEEEE
T ss_pred hhHHHHHHHHHHHhC---CCCcEEEE
Confidence 45688888999 99998776
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.033 Score=54.54 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=58.7
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC---------------CCCCCeeEE-------ecc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF---------------TQDKSLKVF-------NHL 599 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl---------------~~d~rl~vf-------~~l 599 (659)
..+||-||.|.|.+...+... .++++||++|.+++.|++.+.- +.....|+. .|+
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~ 110 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYL 110 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGGC
T ss_pred CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhhc
Confidence 379999999999999998877 5999999999999999987521 011223332 222
Q ss_pred c----chhHHHHHHHhhccCCCCcEEEecCch
Q 006149 600 F----CLQLEEDVNLVLFGLSSESCIKDNSFP 627 (659)
Q Consensus 600 ~----~~~f~~~~~~~Lf~~~~~g~~~~n~~~ 627 (659)
. ...+.+.+.++| +|+|.++.....
T Consensus 111 ~~~~~~~~~l~~~~~~L---~pgG~l~~~~~~ 139 (243)
T 3d2l_A 111 QTEADVKQTFDSAARLL---TDGGKLLFDVHS 139 (243)
T ss_dssp CSHHHHHHHHHHHHHHE---EEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhc---CCCeEEEEEcCC
Confidence 1 235677888999 999998876543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.05 Score=56.81 Aligned_cols=82 Identities=12% Similarity=0.070 Sum_probs=59.8
Q ss_pred CCCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhcC-------------CCC-------C---------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFG-------------FTQ-------D--------- 590 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~Fg-------------l~~-------d--------- 590 (659)
...+||-||.|.|.++..+.+. .|..++++||++|.+++.|++.+. +.. |
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~ 184 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 184 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence 3468999999999999999987 577899999999999999998653 000 0
Q ss_pred -CCeeE-Eecc-cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 591 -KSLKV-FNHL-FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 591 -~rl~v-f~~l-~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
...|+ +.++ ....+.+.+.++| +|+|.++.-.
T Consensus 185 ~~~fD~V~~~~~~~~~~l~~~~~~L---kpgG~lv~~~ 219 (336)
T 2b25_A 185 SLTFDAVALDMLNPHVTLPVFYPHL---KHGGVCAVYV 219 (336)
T ss_dssp ---EEEEEECSSSTTTTHHHHGGGE---EEEEEEEEEE
T ss_pred CCCeeEEEECCCCHHHHHHHHHHhc---CCCcEEEEEe
Confidence 11222 1222 2345788899999 9999887633
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.049 Score=51.51 Aligned_cols=44 Identities=14% Similarity=0.060 Sum_probs=37.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
...+||=||.|.|.+...+... +..+|++||+||.+++.|++.+
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~ 87 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNI 87 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHH
Confidence 3468999999999999977664 4458999999999999999875
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.038 Score=58.07 Aligned_cols=80 Identities=14% Similarity=0.217 Sum_probs=59.5
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC----------C---CCeeEE--e----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ----------D---KSLKVF--N---- 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~----------d---~rl~vf--~---- 597 (659)
....+||-||.|.|.+...+...+|+++++++|+ |.+++.|++.+ ++.. + ...|++ .
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~ 260 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLL 260 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGG
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEccccc
Confidence 3457999999999999999999999999999999 99999999864 2210 0 113433 1
Q ss_pred cccc---hhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HLFC---LQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l~~---~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
++-. ..+.+.+.++| +|+|.+..
T Consensus 261 ~~~~~~~~~~l~~~~~~L---~pgG~l~i 286 (360)
T 1tw3_A 261 NWPDHDAVRILTRCAEAL---EPGGRILI 286 (360)
T ss_dssp GSCHHHHHHHHHHHHHTE---EEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhc---CCCcEEEE
Confidence 2211 36888999999 99996543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.058 Score=52.73 Aligned_cols=81 Identities=20% Similarity=0.139 Sum_probs=60.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC--------------CCCCeeEE------ecc-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--------------QDKSLKVF------NHL- 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~--------------~d~rl~vf------~~l- 599 (659)
...+||-||.|.|.+...+..... .++++||+++.+++.|++.+.-. ++...|+. .|+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 121 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVE 121 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccc
Confidence 457999999999999999988743 38999999999999999876421 12223433 223
Q ss_pred cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
....+.+.+.++| +++|.++...
T Consensus 122 ~~~~~l~~~~~~L---~pgG~l~~~~ 144 (243)
T 3bkw_A 122 DVARLFRTVHQAL---SPGGHFVFST 144 (243)
T ss_dssp CHHHHHHHHHHHE---EEEEEEEEEE
T ss_pred hHHHHHHHHHHhc---CcCcEEEEEe
Confidence 2356788999999 9999887654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.045 Score=53.52 Aligned_cols=77 Identities=9% Similarity=0.033 Sum_probs=58.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC------------CC-C-CCCeeEE-ecccchhHH
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG------------FT-Q-DKSLKVF-NHLFCLQLE 605 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg------------l~-~-d~rl~vf-~~l~~~~f~ 605 (659)
...+||-||.|.|.+...+... ..++++||++|.+++.|++.+. ++ + +...|+. .......+.
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~~~~~l 125 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVI 125 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEESCCSGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCCCHHHHH
Confidence 4579999999999999999988 4699999999999999998731 00 0 2233433 223356677
Q ss_pred HHHHHhhccCCCCcEEE
Q 006149 606 EDVNLVLFGLSSESCIK 622 (659)
Q Consensus 606 ~~~~~~Lf~~~~~g~~~ 622 (659)
..+.++| +|+|.++
T Consensus 126 ~~~~~~L---kpgG~l~ 139 (226)
T 3m33_A 126 LRLPELA---APDAHFL 139 (226)
T ss_dssp GGHHHHE---EEEEEEE
T ss_pred HHHHHHc---CCCcEEE
Confidence 8899999 9999887
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.099 Score=51.56 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=58.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC---C------------CCCCCeeEEe------cc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---F------------TQDKSLKVFN------HL 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg---l------------~~d~rl~vf~------~l 599 (659)
.+.+||-||.|.|.+...+... +.++++||++|.+++.|++.+. + +.....|+.- +.
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 118 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMY 118 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCchhc
Confidence 4579999999999999999886 4689999999999999997652 1 1112334331 11
Q ss_pred c----chhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 F----CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ~----~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+ ...+.+.+.++| +|+|.++...
T Consensus 119 ~~~~~~~~~l~~~~~~L---~pgG~li~~~ 145 (252)
T 1wzn_A 119 FDEEDLRKLFSKVAEAL---KPGGVFITDF 145 (252)
T ss_dssp SCHHHHHHHHHHHHHHE---EEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHc---CCCeEEEEec
Confidence 1 245677888999 9999887643
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.054 Score=51.75 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=57.3
Q ss_pred CCCCeEEEEccCcchH-HHHHHhhCCCccEEEEecChhHHHHHHhhcC---------------CC-CCCCeeEE------
Q 006149 540 GKSVKAVVIGLGAGLL-PMFLHECMPFVGIEAVELDLTMLNLAEDYFG---------------FT-QDKSLKVF------ 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l-~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg---------------l~-~d~rl~vf------ 596 (659)
+.+.+||-||.|.|.+ ...+.. ++.++++||+++.+++.|++.+. ++ ++...|+.
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred CCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 3457999999999987 445544 35699999999999999998741 11 12234433
Q ss_pred ecc---cchhHHHHHHHhhccCCCCcEEEecCc
Q 006149 597 NHL---FCLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 597 ~~l---~~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
.|+ ....+.+.+.++| +|+|.++...+
T Consensus 100 ~~~~~~~~~~~l~~~~~~L---kpgG~l~~~~~ 129 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVL---KPGGLACINFL 129 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHE---EEEEEEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHc---CCCcEEEEEEe
Confidence 233 1346677889999 99998877553
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.042 Score=57.71 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=65.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC-----------CCCCeeEE--eccc-----
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT-----------QDKSLKVF--NHLF----- 600 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~-----------~d~rl~vf--~~l~----- 600 (659)
..+||-||.|.|.+...+....|..++++||+++.+++.|++.+ ++. .+...|+. ...+
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Iv~~~~~~~g~~ 276 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQ 276 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEEEEECCCCCSSSH
T ss_pred CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeEEEECCCcccCcc
Confidence 46899999999999999999999889999999999999999875 221 02233433 1111
Q ss_pred -----chhHHHHHHHhhccCCCCcEEEe--cCchHHHHHHHhh
Q 006149 601 -----CLQLEEDVNLVLFGLSSESCIKD--NSFPEAAVQLGKL 636 (659)
Q Consensus 601 -----~~~f~~~~~~~Lf~~~~~g~~~~--n~~~~~~~~l~~~ 636 (659)
...+.+.+.++| +|+|.+.. |.+......+.+.
T Consensus 277 ~~~~~~~~~l~~~~~~L---kpgG~l~i~~~~~~~~~~~l~~~ 316 (343)
T 2pjd_A 277 TSLDAAQTLIRGAVRHL---NSGGELRIVANAFLPYPDVLDET 316 (343)
T ss_dssp HHHHHHHHHHHHHGGGE---EEEEEEEEEEETTSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC---CCCcEEEEEEcCCCCcHHHHHHh
Confidence 256788899999 99996644 5543333333433
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.034 Score=59.77 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=61.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC----------------CCCeeEE------ec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ----------------DKSLKVF------NH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~----------------d~rl~vf------~~ 598 (659)
...+||-||.|.|.+...+.... .++++||+++.+++.|++. +++. +...|+. +|
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h 183 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGPANVIYAANTLCH 183 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGG
T ss_pred CCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCCEEEEEECChHHh
Confidence 45699999999999999998864 4899999999999999987 3331 1233433 44
Q ss_pred c-cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 L-FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l-~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+ .-..+.+.++++| +|+|++....
T Consensus 184 ~~d~~~~l~~~~r~L---kpgG~l~i~~ 208 (416)
T 4e2x_A 184 IPYVQSVLEGVDALL---APDGVFVFED 208 (416)
T ss_dssp CTTHHHHHHHHHHHE---EEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHc---CCCeEEEEEe
Confidence 4 3568899999999 9999887754
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.08 Score=56.09 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=58.8
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhh----------cC-CCCCCCeeEE--ec----cc--
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY----------FG-FTQDKSLKVF--NH----LF-- 600 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~----------Fg-l~~d~rl~vf--~~----l~-- 600 (659)
....+||=||.|.|.+...|.+.+|+++++++|+ |.|++.|++. |. +++ . |++ .+ +-
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~--~-D~v~~~~vlh~~~d~ 275 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFPGVTHVGGDMFKEVPS--G-DTILMKWILHDWSDQ 275 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTTCCCC--C-SEEEEESCGGGSCHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcCCeEEEeCCcCCCCCC--C-CEEEehHHhccCCHH
Confidence 3457999999999999999999999999999999 9999998864 21 111 1 444 22 21
Q ss_pred -chhHHHHHHHhhccCCCCcEEEe
Q 006149 601 -CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 601 -~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
...+.+.++++| +|+|.+..
T Consensus 276 ~~~~~L~~~~~~L---~pgG~l~i 296 (364)
T 3p9c_A 276 HCATLLKNCYDAL---PAHGKVVL 296 (364)
T ss_dssp HHHHHHHHHHHHS---CTTCEEEE
T ss_pred HHHHHHHHHHHHc---CCCCEEEE
Confidence 236788899999 99996654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.049 Score=55.14 Aligned_cols=78 Identities=8% Similarity=0.060 Sum_probs=58.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC---C------------CCCCCeeEE------ecc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---F------------TQDKSLKVF------NHL 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg---l------------~~d~rl~vf------~~l 599 (659)
.+.+||-||.|.|.+...+... +.++++||+++.+++.|++.+. + +.+...|+. .|+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 197 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTVVFMFL 197 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEEECSSGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEEEccchhhC
Confidence 4579999999999999999987 4599999999999999998752 1 112334433 233
Q ss_pred c---chhHHHHHHHhhccCCCCcEEEe
Q 006149 600 F---CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 600 ~---~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
. ...+.+.+.++| +++|.+..
T Consensus 198 ~~~~~~~~l~~~~~~L---kpgG~l~i 221 (286)
T 3m70_A 198 NRERVPSIIKNMKEHT---NVGGYNLI 221 (286)
T ss_dssp CGGGHHHHHHHHHHTE---EEEEEEEE
T ss_pred CHHHHHHHHHHHHHhc---CCCcEEEE
Confidence 2 236888899999 99997554
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.058 Score=53.98 Aligned_cols=78 Identities=21% Similarity=0.144 Sum_probs=57.8
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC----------C-CCCCeeEE------ecc-cc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----------T-QDKSLKVF------NHL-FC 601 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl----------~-~d~rl~vf------~~l-~~ 601 (659)
..+.+||=||.|.|.+...+.. +..++++||++|.+++.|++...+ + ++...|+. .|+ ..
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 110 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHL 110 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSH
T ss_pred CCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhccCH
Confidence 4567999999999999999987 668999999999999998775311 1 12334433 233 24
Q ss_pred hhHHHHHHHhhccCCCCcEEEe
Q 006149 602 LQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
..+.+.++++| + +|.+..
T Consensus 111 ~~~l~~~~~~L---k-gG~~~~ 128 (261)
T 3ege_A 111 EKSFQEMQRII---R-DGTIVL 128 (261)
T ss_dssp HHHHHHHHHHB---C-SSCEEE
T ss_pred HHHHHHHHHHh---C-CcEEEE
Confidence 67888999999 9 994433
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.048 Score=56.15 Aligned_cols=84 Identities=8% Similarity=0.109 Sum_probs=61.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-----------------------------CC-CC
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----------------------------FT-QD 590 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-----------------------------l~-~d 590 (659)
.+.+||-||.|.|.+...+... +..++++||+++.+++.|++.+. ++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 4579999999999988888774 56799999999999999987541 11 11
Q ss_pred CCeeEE------eccc-c----hhHHHHHHHhhccCCCCcEEEecCchH
Q 006149 591 KSLKVF------NHLF-C----LQLEEDVNLVLFGLSSESCIKDNSFPE 628 (659)
Q Consensus 591 ~rl~vf------~~l~-~----~~f~~~~~~~Lf~~~~~g~~~~n~~~~ 628 (659)
...|+. .+++ + ..+...++++| +|+|.++...+..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L---kpgG~li~~~~~~ 158 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERL---SPGGYFIGTTPNS 158 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTE---EEEEEEEEEEECH
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHh---CCCcEEEEecCCh
Confidence 245544 1221 1 37888899999 9999998877543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.077 Score=50.45 Aligned_cols=77 Identities=21% Similarity=0.154 Sum_probs=57.2
Q ss_pred eEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC-------------CCCCeeEE----ecc---c
Q 006149 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT-------------QDKSLKVF----NHL---F 600 (659)
Q Consensus 544 ~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~-------------~d~rl~vf----~~l---~ 600 (659)
+||-||.|.|.+...+... +.++++||+++.+++.|++.+ ++. ++...|+. .|+ .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~ 109 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSL 109 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCCCHHH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcCCHHH
Confidence 9999999999999999886 459999999999999999875 110 11233433 222 1
Q ss_pred chhHHHHHHHhhccCCCCcEEEecC
Q 006149 601 CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 601 ~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
...+.+.+.++| +|+|.++...
T Consensus 110 ~~~~l~~~~~~L---~pgG~l~~~~ 131 (202)
T 2kw5_A 110 RQQLYPKVYQGL---KPGGVFILEG 131 (202)
T ss_dssp HHHHHHHHHTTC---CSSEEEEEEE
T ss_pred HHHHHHHHHHhc---CCCcEEEEEE
Confidence 345677888888 9999887754
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.056 Score=56.78 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=56.6
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC---------------CCCCeeEE--e--
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT---------------QDKSLKVF--N-- 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~---------------~d~rl~vf--~-- 597 (659)
....+||-||.|.|.++.++.+. +..++++||+++ +++.|++.+ |+. +++..|+. +
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 34579999999999999999987 445999999997 889998764 321 11234433 1
Q ss_pred --ccc----chhHHHHHHHhhccCCCCcEEEe
Q 006149 598 --HLF----CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 --~l~----~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.+. -..+...+.++| +|+|.+..
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~L---kpgG~lip 169 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYL---AKGGSVYP 169 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHE---EEEEEEES
T ss_pred hhhccCHHHHHHHHHHHHhhc---CCCcEEEc
Confidence 121 134667778899 99998874
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.082 Score=53.39 Aligned_cols=83 Identities=11% Similarity=-0.027 Sum_probs=59.6
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-------------------CCCCeeEE----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-------------------QDKSLKVF---- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-------------------~d~rl~vf---- 596 (659)
....+||-||.|.|.+...+... +..++++||+++.+++.|++.+.-. .+...|+.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 34579999999999888887776 4459999999999999999875211 12234443
Q ss_pred --ecc-----cchhHHHHHHHhhccCCCCcEEEecCc
Q 006149 597 --NHL-----FCLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 597 --~~l-----~~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
.++ ....+.+.+.++| +|+|.++....
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~L---kpgG~l~~~~~ 175 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHL---RPGGYFIMTVP 175 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTE---EEEEEEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHHHHhc---CCCCEEEEEEC
Confidence 111 1246778889999 99998877553
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.048 Score=52.30 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=57.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCc-cEEEEecChhHHHHHHhhcC-----------CC-CCCCeeEE------ecc-c
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYFG-----------FT-QDKSLKVF------NHL-F 600 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~-~i~~VEiDp~V~~vA~~~Fg-----------l~-~d~rl~vf------~~l-~ 600 (659)
...+||-||.|.|.+...+ .. ++++||+++.+++.|++.+. ++ ++...|+. +|+ .
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 4579999999999988887 34 89999999999999998751 11 12234443 333 2
Q ss_pred chhHHHHHHHhhccCCCCcEEEecC
Q 006149 601 CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 601 ~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
...+.+.+.++| +|+|.+....
T Consensus 111 ~~~~l~~~~~~L---~pgG~l~i~~ 132 (211)
T 2gs9_A 111 VERVLLEARRVL---RPGGALVVGV 132 (211)
T ss_dssp HHHHHHHHHHHE---EEEEEEEEEE
T ss_pred HHHHHHHHHHHc---CCCCEEEEEe
Confidence 457888999999 9999776643
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.11 Score=53.01 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=40.1
Q ss_pred CCCeEEEEccC---cchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 541 KSVKAVVIGLG---AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 541 ~~~~vLiiGlG---gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
...++|-||.| +|.+...+.+..|+.+|+.||+||.|++.||.-+.
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~ 126 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLA 126 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhc
Confidence 45789999999 56777777788999999999999999999998774
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.3 Score=56.91 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=58.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhc---------CCC--------------CCCCeeEE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---------GFT--------------QDKSLKVF 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~F---------gl~--------------~d~rl~vf 596 (659)
.+.+||=||-|.|.+...|.+.. |..+|++||+++.+++.|++-+ +++ .+...|+.
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 45799999999999999999988 5679999999999999998822 221 12233432
Q ss_pred ------ecccch---hHHHHHHHhhccCCCCcEEE
Q 006149 597 ------NHLFCL---QLEEDVNLVLFGLSSESCIK 622 (659)
Q Consensus 597 ------~~l~~~---~f~~~~~~~Lf~~~~~g~~~ 622 (659)
+|+... .|.+.+.++| +|+.+++
T Consensus 801 V~~eVLeHL~dp~l~~~L~eI~RvL---KPG~LII 832 (950)
T 3htx_A 801 TCLEVIEHMEEDQACEFGEKVLSLF---HPKLLIV 832 (950)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred EEeCchhhCChHHHHHHHHHHHHHc---CCCEEEE
Confidence 555533 3788999999 9984433
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.052 Score=57.21 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=58.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC---------------CCCeeEE-e----
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ---------------DKSLKVF-N---- 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~---------------d~rl~vf-~---- 597 (659)
...+||-||.|.|.+..++.+. +..+|++||+++ +++.|++.. |+.. +...|+. .
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 3478999999999999999988 556999999996 899998765 3221 2233443 1
Q ss_pred -cc----cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 -HL----FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 -~l----~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+ .-..+...+.++| +|+|++..+.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~L---kpgG~li~~~ 173 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWL---APDGLIFPDR 173 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHE---EEEEEEESCE
T ss_pred ccccCchhHHHHHHHHHHhC---CCCCEEcccc
Confidence 12 2344667778999 9999987644
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.035 Score=53.68 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=44.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
+.+.+||=||-|-|.++..+....|.++++++|||+.++++|++.+.
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~ 94 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIG 94 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999883
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.065 Score=54.82 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=39.9
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||=||.|.|.+...+.+. |..++++||+++..+++|++-.
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~ 166 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNA 166 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHH
Confidence 368999999999999999999 9999999999999999999764
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.062 Score=55.52 Aligned_cols=82 Identities=11% Similarity=0.152 Sum_probs=57.3
Q ss_pred CCCeEEEEccCcch-HHHHHHhhCCCccEEEEecChhHHHHHHhhc---CC----------------------------C
Q 006149 541 KSVKAVVIGLGAGL-LPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GF----------------------------T 588 (659)
Q Consensus 541 ~~~~vLiiGlGgG~-l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl----------------------------~ 588 (659)
...+||-||.|+|. +..++... ..+|++||+++.+++.|++.. +. .
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE--IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 35789999999775 55555432 358999999999999999763 21 0
Q ss_pred CCCCeeEEe------cccc----hhHHHHHHHhhccCCCCcEEEecCch
Q 006149 589 QDKSLKVFN------HLFC----LQLEEDVNLVLFGLSSESCIKDNSFP 627 (659)
Q Consensus 589 ~d~rl~vf~------~l~~----~~f~~~~~~~Lf~~~~~g~~~~n~~~ 627 (659)
++...|+.. +++. ..+.+.+.++| +|+|.+......
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~L---kpGG~~i~~~~~ 171 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELT---ASGGKVLITTMD 171 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHE---EEEEEEEEEEEC
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHc---CCCCEEEEEeCC
Confidence 123455541 1221 56888999999 999998876643
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.26 Score=51.17 Aligned_cols=105 Identities=16% Similarity=0.109 Sum_probs=75.7
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc----CCCCcEEEEeecCCCC---------CCCCcc
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR----DRSDMRWRVMDMTSMQ---------FMDETF 135 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~----~~~~i~~~~~D~~~l~---------~~~~sF 135 (659)
...|+++|||-=.....+.......++-|| .+.+++.-++.... ...+..++.+|+.+ . +.....
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSAR 180 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSC
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCC
Confidence 357999999987776665422124899999 47787755454432 23567889999987 3 222345
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
-++++.|+++++...+ ...+++.+...+.||+.+++....
T Consensus 181 t~~i~Egvl~Yl~~~~-----~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATA-----QDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp EEEEECSCGGGSCHHH-----HHHHHHHHHHTCCTTCEEEEECCC
T ss_pred EEEEEechHhhCCHHH-----HHHHHHHHHHhCCCCeEEEEEecC
Confidence 6888999999987644 678999999999999888887654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.1 Score=54.83 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=40.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~F 585 (659)
...+||=+|.|.|+++..+.... |..+++++|+||.+++.|++-+
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~ 248 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAA 248 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHH
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHH
Confidence 34689999999999999999987 8889999999999999999865
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.092 Score=52.95 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=43.8
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
..+||-||-|.|.++..|.... .++++||+|+.+++.|++.+.- .+++++.
T Consensus 30 ~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~--~~~v~~i 80 (255)
T 3tqs_A 30 TDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQ--QKNITIY 80 (255)
T ss_dssp TCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTT--CTTEEEE
T ss_pred cCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhh--CCCcEEE
Confidence 4689999999999999999875 5899999999999999998864 3466655
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=94.27 E-value=0.055 Score=50.38 Aligned_cols=45 Identities=13% Similarity=0.040 Sum_probs=39.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
...+||-||.|.|.+...+... +..++++||+|+.+++.|++.+.
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~ 75 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNII 75 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHH
Confidence 4569999999999999988877 55699999999999999998773
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.12 Score=57.07 Aligned_cols=80 Identities=23% Similarity=0.257 Sum_probs=55.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC--------------CCCeeEE-e-----
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ--------------DKSLKVF-N----- 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~--------------d~rl~vf-~----- 597 (659)
...+||-||.|.|.++.++.+ .+..+|++||+++ +++.|++.+ |+.+ .++.|+. .
T Consensus 158 ~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~ 235 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY 235 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHH
T ss_pred CCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchH
Confidence 457999999999999999987 4667999999999 889998754 3321 1123433 1
Q ss_pred cccc---hhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 HLFC---LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l~~---~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
++.. .+.+..++++| +++|.+....
T Consensus 236 ~~~~e~~~~~l~~~~~~L---kpgG~li~~~ 263 (480)
T 3b3j_A 236 MLFNERMLESYLHAKKYL---KPSGNMFPTI 263 (480)
T ss_dssp HHTCHHHHHHHHHGGGGE---EEEEEEESCE
T ss_pred hcCcHHHHHHHHHHHHhc---CCCCEEEEEe
Confidence 1111 23444567888 9999887543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.12 Score=52.68 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=42.2
Q ss_pred eEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 544 ~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
+||-||-|.|.+...|.... .++++||+|+.+++.+++.+. +.++++.
T Consensus 49 ~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~---~~~v~vi 96 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLS---GLPVRLV 96 (271)
T ss_dssp CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTT---TSSEEEE
T ss_pred eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcC---CCCEEEE
Confidence 89999999999999999875 589999999999999999886 2466555
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.19 Score=53.09 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=64.3
Q ss_pred CCCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-------CCCCccc
Q 006149 66 SSPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------FMDETFD 136 (659)
Q Consensus 66 ~~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------~~~~sFD 136 (659)
..++.+||.+|||. |.++..+++. |...|+++|.++.-++.+++.- .. .+ .|..+.. ..++.||
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lG----a~-~v--i~~~~~~~~~~~~~~~~gg~D 260 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG----AT-HV--INSKTQDPVAAIKEITDGGVN 260 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT----CS-EE--EETTTSCHHHHHHHHTTSCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcC----CC-EE--ecCCccCHHHHHHHhcCCCCc
Confidence 36789999999987 7778888775 7657999999998877664321 11 11 1222111 1123799
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+|++.-.- ...+....+.|++||+++++...
T Consensus 261 ~vid~~g~-------------~~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 261 FALESTGS-------------PEILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp EEEECSCC-------------HHHHHHHHHTEEEEEEEEECCCC
T ss_pred EEEECCCC-------------HHHHHHHHHHHhcCCEEEEeCCC
Confidence 99864321 15688899999999999887643
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.11 Score=50.39 Aligned_cols=84 Identities=13% Similarity=0.075 Sum_probs=59.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-----CCccEEEEecChhHHHHHHhhcCCCC-----CCC------------------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-----PFVGIEAVELDLTMLNLAEDYFGFTQ-----DKS------------------ 592 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-----p~~~i~~VEiDp~V~~vA~~~Fgl~~-----d~r------------------ 592 (659)
...+||-||.|.|.+...+.+.. |..++++||+++.+++.|++.+.-.. .++
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 34699999999999999998876 56799999999999999998752100 111
Q ss_pred ---eeEE-ecccchhHHHHHHHhhccCCCCcEEEecCch
Q 006149 593 ---LKVF-NHLFCLQLEEDVNLVLFGLSSESCIKDNSFP 627 (659)
Q Consensus 593 ---l~vf-~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~~~ 627 (659)
.|+. .......+.+.+.+.| +++|.++....+
T Consensus 160 ~~~fD~I~~~~~~~~~~~~~~~~L---kpgG~lv~~~~~ 195 (227)
T 2pbf_A 160 LGLFDAIHVGASASELPEILVDLL---AENGKLIIPIEE 195 (227)
T ss_dssp HCCEEEEEECSBBSSCCHHHHHHE---EEEEEEEEEEEE
T ss_pred CCCcCEEEECCchHHHHHHHHHhc---CCCcEEEEEEcc
Confidence 2221 1111224457788888 999988876643
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.2 Score=53.51 Aligned_cols=70 Identities=17% Similarity=0.074 Sum_probs=55.5
Q ss_pred CeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC--------CCCcccEEEec
Q 006149 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF--------MDETFDVILDK 141 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~--------~~~sFDvVi~~ 141 (659)
.++||+-||.|.++.-+...|+..+.++|+++.+++..+. +.++..++++|+.++.. ....+|+|+..
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~----N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~gg 78 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAI----NFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGG 78 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHH----HCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEEC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHH----hCCCCceEecChhhcCHHHHHhhcccCCCeeEEEec
Confidence 5899999999999999999999778899999988764432 24567888999988742 24679999965
Q ss_pred cc
Q 006149 142 GG 143 (659)
Q Consensus 142 g~ 143 (659)
..
T Consensus 79 pP 80 (376)
T 3g7u_A 79 PP 80 (376)
T ss_dssp CC
T ss_pred CC
Confidence 44
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.16 Score=51.49 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=38.8
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
....+||=||.|.|.++..|.... .+|++||+++.+++.|++.+
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g--~~V~gvD~S~~ml~~Ar~~~ 87 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERG--ASVTVFDFSQRMCDDLAEAL 87 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHT
T ss_pred CCcCEEEEEeCcchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHH
Confidence 345699999999999999998864 58999999999999999875
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.41 Score=51.62 Aligned_cols=43 Identities=19% Similarity=0.067 Sum_probs=38.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~ 583 (659)
...+||=||-|.|.++..+....+..++++|||+|.++++|++
T Consensus 173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~ 215 (438)
T 3uwp_A 173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAET 215 (438)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 3468999999999999999888776569999999999999985
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.068 Score=49.07 Aligned_cols=43 Identities=14% Similarity=-0.039 Sum_probs=38.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
...+||-+|.|.|.+...+....+. +++||+|+.+++.|++.+
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~ 83 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENV 83 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHH
Confidence 4468999999999999999988765 999999999999999865
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.12 Score=54.15 Aligned_cols=78 Identities=8% Similarity=0.031 Sum_probs=55.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC------------CCCCeeEE------ec
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT------------QDKSLKVF------NH 598 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~------------~d~rl~vf------~~ 598 (659)
+...+||=||.|.|.+...+.+.+|+.+++++|+ |.++. ++.. ++. +-+..|++ .+
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~ 259 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHN 259 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGG
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccC
Confidence 4567999999999999999999999999999999 55655 3222 111 11133443 22
Q ss_pred ccc---hhHHHHHHHhhccCCCCcEEEe
Q 006149 599 LFC---LQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 599 l~~---~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+-. ..+.+.++++| +|+|.+..
T Consensus 260 ~~d~~~~~~L~~~~~~L---kpgG~l~i 284 (348)
T 3lst_A 260 WGDEDSVRILTNCRRVM---PAHGRVLV 284 (348)
T ss_dssp SCHHHHHHHHHHHHHTC---CTTCEEEE
T ss_pred CCHHHHHHHHHHHHHhc---CCCCEEEE
Confidence 222 47888999999 99997755
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.13 Score=47.50 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=39.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
...+||-||.|.|.+...+.. +..++++||+++.+++.|++.+
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~ 77 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNL 77 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHH
Confidence 446999999999999999988 7789999999999999999886
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.09 Score=55.31 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=58.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-------C-CCCCCeeEE------eccc---chh
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-------F-TQDKSLKVF------NHLF---CLQ 603 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-------l-~~d~rl~vf------~~l~---~~~ 603 (659)
...+||=||.|.|.+...+.+.+|+.+++++|+ |.+++.|+++=+ + .+-+..|++ .++- ...
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~ 271 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLK 271 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHH
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccCCCcEEEeCccCCCCCCceEEEEcccccCCCHHHHHH
Confidence 447999999999999999999999999999999 899998886310 0 011224444 1221 237
Q ss_pred HHHHHHHhhccCCC---CcEEEe
Q 006149 604 LEEDVNLVLFGLSS---ESCIKD 623 (659)
Q Consensus 604 f~~~~~~~Lf~~~~---~g~~~~ 623 (659)
+.+.++++| +| +|.+..
T Consensus 272 ~l~~~~~~L---~p~~~gG~l~i 291 (358)
T 1zg3_A 272 ILKNSKEAI---SHKGKDGKVII 291 (358)
T ss_dssp HHHHHHHHT---GGGGGGCEEEE
T ss_pred HHHHHHHhC---CCCCCCcEEEE
Confidence 888999999 99 995544
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.1 Score=55.58 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=58.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC--------------CCCeeEE-e----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ--------------DKSLKVF-N---- 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~--------------d~rl~vf-~---- 597 (659)
....+||-||.|.|.+..++.+... .+|++||++ .+++.|++.+ ++.. ..+.|+. .
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 3457999999999999999998843 499999999 8999998876 3321 0223333 1
Q ss_pred c-cc----chhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 H-LF----CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~-l~----~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+ +. -..+...++++| +|+|++....
T Consensus 140 ~~l~~e~~~~~~l~~~~~~L---kpgG~li~~~ 169 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWL---KPTGVMYPSH 169 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHE---EEEEEEESSE
T ss_pred hcccchHHHHHHHHHHHhhC---CCCeEEEEec
Confidence 1 11 234677888899 9999987643
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.099 Score=52.05 Aligned_cols=80 Identities=9% Similarity=0.123 Sum_probs=59.1
Q ss_pred CCCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhcCCCC------------------CCCee-EEeccc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFTQ------------------DKSLK-VFNHLF 600 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~Fgl~~------------------d~rl~-vf~~l~ 600 (659)
...+||=||.|.|.+...|.+. .|+-+|.+||++|.+++.|++-..-.. ++.+| +|..+.
T Consensus 77 pG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~ 156 (233)
T 4df3_A 77 EGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVA 156 (233)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEecc
Confidence 3468999999999999999986 477799999999999999887652110 11224 343332
Q ss_pred ----chhHHHHHHHhhccCCCCcEEEe
Q 006149 601 ----CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 601 ----~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
...+...++++| +|+|.++.
T Consensus 157 ~~~~~~~~l~~~~r~L---KpGG~lvI 180 (233)
T 4df3_A 157 QPEQAAIVVRNARFFL---RDGGYMLM 180 (233)
T ss_dssp CTTHHHHHHHHHHHHE---EEEEEEEE
T ss_pred CChhHHHHHHHHHHhc---cCCCEEEE
Confidence 235778888999 99997765
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.22 Score=53.20 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=64.8
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC---------CCCcc
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF---------MDETF 135 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~---------~~~sF 135 (659)
.++.+||.+|||. |.++..+++. |..+|+++|.++.-++.+++ .+ ..+ .|..+..+ ....|
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lG--a~~--i~~~~~~~~~~~~~~~~~g~g~ 255 (398)
T 2dph_A 184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AG--FET--IDLRNSAPLRDQIDQILGKPEV 255 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TT--CEE--EETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cC--CcE--EcCCCcchHHHHHHHHhCCCCC
Confidence 6789999999987 7888888875 76689999999977765432 12 232 23322211 12369
Q ss_pred cEEEeccccccc--------CCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 136 DVILDKGGLDAL--------MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 136 DvVi~~g~l~~l--------~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|+|++.-.-... ..+. ..+....+.|++||+++++..
T Consensus 256 Dvvid~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 256 DCGVDAVGFEAHGLGDEANTETPN-------GALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp EEEEECSCTTCBCSGGGTTSBCTT-------HHHHHHHHHEEEEEEEECCSC
T ss_pred CEEEECCCCccccccccccccccH-------HHHHHHHHHHhcCCEEEEecc
Confidence 999975432210 0011 468889999999999987654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=93.55 E-value=0.19 Score=48.89 Aligned_cols=81 Identities=10% Similarity=0.030 Sum_probs=56.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhcCCC----------C--------CCCeeEE-eccc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT----------Q--------DKSLKVF-NHLF 600 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~Fgl~----------~--------d~rl~vf-~~l~ 600 (659)
...+||-+|.|.|.+...+...+ |..++++||+++.+++.+++..... . ++..|+. ....
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 152 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA 152 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC
Confidence 34689999999999999999875 5679999999998888776543211 0 1123332 1121
Q ss_pred c----hhHHHHHHHhhccCCCCcEEEec
Q 006149 601 C----LQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 601 ~----~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
. ..+...+.++| +|+|.++.-
T Consensus 153 ~~~~~~~~l~~~~~~L---kpgG~l~~~ 177 (227)
T 1g8a_A 153 QPTQAKILIDNAEVYL---KRGGYGMIA 177 (227)
T ss_dssp STTHHHHHHHHHHHHE---EEEEEEEEE
T ss_pred CHhHHHHHHHHHHHhc---CCCCEEEEE
Confidence 1 24578899999 999977663
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.075 Score=52.47 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=60.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC-----------------CCCeeEE--ec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ-----------------DKSLKVF--NH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~-----------------d~rl~vf--~~ 598 (659)
...+||=||.|.|.+...+....|..+|++||+++.+++.|++.+ |+.. +...|+. ..
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 346999999999999999998888899999999999999998753 4320 2233433 11
Q ss_pred c-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 599 L-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 599 l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+ .-..+.+.+.++| +++|.++.
T Consensus 150 ~~~~~~~l~~~~~~L---kpgG~l~~ 172 (240)
T 1xdz_A 150 VARLSVLSELCLPLV---KKNGLFVA 172 (240)
T ss_dssp CSCHHHHHHHHGGGE---EEEEEEEE
T ss_pred cCCHHHHHHHHHHhc---CCCCEEEE
Confidence 2 2356778888899 99998765
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.12 Score=51.74 Aligned_cols=51 Identities=29% Similarity=0.447 Sum_probs=42.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
...+||=||-|.|.+...|... +..++++||+|+.+++.+++. + ..++++.
T Consensus 31 ~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~---~~~v~~i 81 (249)
T 3ftd_A 31 EGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-G---DERLEVI 81 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-C---CTTEEEE
T ss_pred CcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-c---CCCeEEE
Confidence 3468999999999999999987 446999999999999999987 3 3456554
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.3 Score=51.61 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=63.5
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCc
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDET 134 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~s 134 (659)
.++.+||..|+|. |.++..+++. |...|+++|.++.-++.+++.-. . .. .|..+.. ...+.
T Consensus 181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa---~--~v--i~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGA---T--AT--VDPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC---S--EE--ECTTSSCHHHHHHSTTSSSTTC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC---C--EE--ECCCCcCHHHHHHhhhhccCCC
Confidence 5789999999976 6677777775 76689999999987775543211 1 11 1211111 22347
Q ss_pred ccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 135 FDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+|+|++.-. . ...+....+.|++||+++++...
T Consensus 254 ~Dvvid~~G-----~--------~~~~~~~~~~l~~~G~vv~~G~~ 286 (370)
T 4ej6_A 254 VDVVIECAG-----V--------AETVKQSTRLAKAGGTVVILGVL 286 (370)
T ss_dssp EEEEEECSC-----C--------HHHHHHHHHHEEEEEEEEECSCC
T ss_pred CCEEEECCC-----C--------HHHHHHHHHHhccCCEEEEEecc
Confidence 999996421 1 15688899999999999887643
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.13 Score=53.16 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=39.0
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
..+||-||-|.|.++..|... ..++++||+|+.+++.|++.+.
T Consensus 51 ~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~ 93 (295)
T 3gru_A 51 DDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKE 93 (295)
T ss_dssp TCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHH
T ss_pred cCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhc
Confidence 468999999999999999988 3589999999999999998874
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=93.40 E-value=0.23 Score=48.15 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=55.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhH----HHHHHhhcCC--------------CCCCCeeEE-eccc-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTM----LNLAEDYFGF--------------TQDKSLKVF-NHLF- 600 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V----~~vA~~~Fgl--------------~~d~rl~vf-~~l~- 600 (659)
...+||=||-|.|.+...+....+..+|++||++|.+ .+.|++.-+. +.....|+. ..+.
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~ 136 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQ 136 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCS
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEeccC
Confidence 3468999999999999999988876699999999974 5566643110 001233432 2221
Q ss_pred ---chhHHHHHHHhhccCCCCcEEEec
Q 006149 601 ---CLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 601 ---~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
...+...++++| +|+|.++..
T Consensus 137 ~~~~~~~l~~~~r~L---kpgG~l~i~ 160 (210)
T 1nt2_A 137 KNQIEILKANAEFFL---KEKGEVVIM 160 (210)
T ss_dssp TTHHHHHHHHHHHHE---EEEEEEEEE
T ss_pred hhHHHHHHHHHHHHh---CCCCEEEEE
Confidence 122467889999 999988765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 659 | ||||
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 5e-08 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 9e-07 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 9e-07 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 4e-06 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 1e-05 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 1e-05 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 2e-05 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 3e-05 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 3e-05 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 8e-05 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 2e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 4e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 4e-04 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 7e-04 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.001 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 0.001 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 0.001 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 0.003 |
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.6 bits (125), Expect = 5e-08
Identities = 40/227 (17%), Positives = 74/227 (32%), Gaps = 28/227 (12%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
D + W + IGD+ AE+ + L+ L+ ++L CG S
Sbjct: 23 DGEAARVWQLY-----IGDTRSRTAEY---KAWLLGLLRQH---GCHRVLDVACGTGVDS 71
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM---------DET 134
L + GF +T+VD S ++ L+ R + + + ++ D
Sbjct: 72 IMLVEEGFS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF 130
Query: 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF 194
VI L + + L + +++ GG V ++L
Sbjct: 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYIL-------ST 183
Query: 195 GWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLD 241
G I KS + T ++ + + V L T + D
Sbjct: 184 GCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRD 230
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 47.7 bits (112), Expect = 9e-07
Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 7/153 (4%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
++ E L ++ A P + L GCGN R S +L G+ +T D + +
Sbjct: 7 NYFTEKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYD-VTAWDKNPASM 65
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164
+++ R + D + + D +D IL + L + ++ +
Sbjct: 66 ANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTI-----PGLIANM 120
Query: 165 KRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWK 197
+R K GG + + ++ F F +K
Sbjct: 121 QRCTKPGGYNLIVAAMDTPDFPCTVG-FPFAFK 152
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 48.4 bits (114), Expect = 9e-07
Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 19/138 (13%)
Query: 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKV 102
F + LRD +++ + +L GCG + DA +D
Sbjct: 60 FLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDV--- 116
Query: 103 VISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLS 162
++ + + + V + F D + D I+
Sbjct: 117 -SKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP--------------CKAE 161
Query: 163 EVKRLLKSGGKFVCLTLA 180
E+ R++K GG + T
Sbjct: 162 ELARVVKPGGWVITATPG 179
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 46.8 bits (110), Expect = 4e-06
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 10/114 (8%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124
+ P I+ GCG L L G T +D + ++++ D + D
Sbjct: 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD 85
Query: 125 MTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178
T ++ D+ I L + PE L ++ +K GGK +C
Sbjct: 86 ATEIELNDKYDIAICH-AFLLHMTTPE-------TMLQKMIHSVKKGGKIICFE 131
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 45.4 bits (106), Expect = 1e-05
Identities = 27/195 (13%), Positives = 60/195 (30%), Gaps = 34/195 (17%)
Query: 10 SSSSSATDLLQTLGDFTSK------ENWDKFFTIRGIGDSFEWYAE-------------- 49
S +S+ +L + D K E W T WY +
Sbjct: 7 SKEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLYDPEKGWYGKALEYWRTVPATVSG 66
Query: 50 ----WPQLRDPLIS----LIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101
+ D I I + + L G G R++++L + ++ K
Sbjct: 67 VLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVK 126
Query: 102 VVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYL 161
++ + +R + ++ + M + T+D+I+ + L + + +
Sbjct: 127 HML-EEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVK-----FF 180
Query: 162 SEVKRLLKSGGKFVC 176
++ L G
Sbjct: 181 KHCQQALTPNGYIFF 195
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 1e-05
Identities = 22/168 (13%), Positives = 48/168 (28%), Gaps = 22/168 (13%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL 86
+ E W + F L+ L + + ++ P CG + +
Sbjct: 9 TLEEWQDKWVNGKTA--FHQEQGHQLLKKHLDTFLKGK---SGLRVFFPLCGKAVEMKWF 63
Query: 87 YDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146
D G + V+ S++ I + S+ + + F + ++ L +
Sbjct: 64 ADRGHS-VVGVEISELGIQEFFTEQNLSYSEEPITEIP-GTKVFKSSSGNISLYCCSIFD 121
Query: 147 LMEPELGH---------------KLGNQYLSEVKRLLKSGGKFVCLTL 179
L +G Y + LL +++ L
Sbjct: 122 LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 11/188 (5%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+ + + F +S E+ + L L+ + ++L CG S L D
Sbjct: 3 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYM-----KKRGKVLDLACGVGGFSFLLED 57
Query: 89 AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148
GF + D S+ +I S++ + V D + F D+TFD ++ +
Sbjct: 58 YGFEVVGV-DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 116
Query: 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSS 208
EL NQ EV+R+LK GKF+ +L L G K + +
Sbjct: 117 PLEL-----NQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQE 171
Query: 209 SEPSLQTF 216
+ F
Sbjct: 172 ERTVVIEF 179
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 43.2 bits (100), Expect = 3e-05
Identities = 19/134 (14%), Positives = 42/134 (31%), Gaps = 10/134 (7%)
Query: 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR 110
++ L + P ++LVP CG S+ L G+H + + S+ +
Sbjct: 3 SEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTE 61
Query: 111 N-----VRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGH----KLGNQYL 161
+ + D + + D D G A + + +Y+
Sbjct: 62 RGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYV 121
Query: 162 SEVKRLLKSGGKFV 175
++ L+ +
Sbjct: 122 QHLEALMPQACSGL 135
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 3e-05
Identities = 20/126 (15%), Positives = 35/126 (27%)
Query: 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR 113
P + + A SS ++L G G + + + +A ++ + V + R
Sbjct: 39 ETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR 98
Query: 114 DRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGK 173
+ + L E N + RLLK GG
Sbjct: 99 QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV 158
Query: 174 FVCLTL 179
L
Sbjct: 159 LTYCNL 164
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 42.2 bits (98), Expect = 8e-05
Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 9/112 (8%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126
++L G G + VD +K ++ +
Sbjct: 15 RAEHRVLDIGAGAGHTALAFSPYVQE-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTA 73
Query: 127 SMQFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177
++FD+I + + + + EV R+LK G+F+ +
Sbjct: 74 ESLPFPDDSFDIITCRYAAHHFSDVR-------KAVREVARVLKQDGRFLLV 118
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 29/252 (11%), Positives = 56/252 (22%), Gaps = 59/252 (23%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
F ++ +++ G ++ + L P ++ G G +
Sbjct: 10 HFLPRDYLATYYSFDGSPSPEAEMLKF--NLECLHKTF-GPGGLQGDTLIDIGSGPTIYQ 66
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-------------------- 123
F IT DF+ ++ + ++ W
Sbjct: 67 VLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126
Query: 124 ---------------DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL 168
+ D +L ++ ++ L + LL
Sbjct: 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYR---AALCNLASLL 183
Query: 169 KSGGKFVCLTLAESH---VLGLLFPKFRFGWK-------------MSVHAIPQKSSSEPS 212
K GG V V F + PQ S +
Sbjct: 184 KPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNA 243
Query: 213 LQT--FMVVADK 222
+VA K
Sbjct: 244 ANNGVCCIVARK 255
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 4e-04
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 8/109 (7%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMT 126
P +IL G G+ + T +D S + + RR S+ + +
Sbjct: 33 PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 92
Query: 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
+ +E DV G + + LK GG +
Sbjct: 93 AGYVANEKCDVAACVGATWIAGGFA-------GAEELLAQSLKPGGIML 134
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 40.1 bits (93), Expect = 4e-04
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 8/117 (6%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126
+IL G H+ D G + ++++ ++ ++L + +
Sbjct: 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANK 133
Query: 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183
++ + V D + E + K LK GG + A S
Sbjct: 134 PQEYANIVEKV-------DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI 183
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 7e-04
Identities = 17/144 (11%), Positives = 38/144 (26%), Gaps = 24/144 (16%)
Query: 66 SSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI-----------------SDML 108
+ +IL G G + + V + V+ S++
Sbjct: 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLE 97
Query: 109 RRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL 168
+ + + +D I L + + K LL
Sbjct: 98 NVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLK-------FFHSLL 150
Query: 169 KSGGKFVCLTLAESHVLGLLFPKF 192
+ K + + ++ S L+ K+
Sbjct: 151 GTNAKMLIIVVSGSSGWDKLWKKY 174
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 0.001
Identities = 15/122 (12%), Positives = 34/122 (27%), Gaps = 17/122 (13%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKVVISDMLRRNVRDRSDMRW----- 120
+ + G G ++ + A V+ + + + R M+W
Sbjct: 150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH 209
Query: 121 -----RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
D S ++ + + + + + L E +K GG+ V
Sbjct: 210 AEYTLERGDFLSEEWRERIANTSV------IFVNNFAFGPEVDHQLKERFANMKEGGRIV 263
Query: 176 CL 177
Sbjct: 264 SS 265
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 39.2 bits (90), Expect = 0.001
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 72 ILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR--NVRDRSDMRWRVMDMTSMQ 129
+L GCG AG VD ++V I+D R N++ R + +R D
Sbjct: 28 VLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH 87
Query: 130 F-MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 185
+ + FDVI + + R L+ GG F+ + +L
Sbjct: 88 MDLGKEFDVISSQFSFHYAFSTSESLD---IAQRNIARHLRPGGYFIMTVPSRDVIL 141
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 38.6 bits (88), Expect = 0.001
Identities = 21/147 (14%), Positives = 42/147 (28%), Gaps = 14/147 (9%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
E +D + E + + ++L CG + L +
Sbjct: 10 EYYDTIYR-----RRIERVKAEIDFVEEIFKEDAKR---EVRRVLDLACGTGIPTLELAE 61
Query: 89 AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148
G+ + +++ R ++R+ + FD +
Sbjct: 62 RGYEVVGLDLHEEMLRVAR--RKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYF 119
Query: 149 EPELGHKLGNQYLSEVKRLLKSGGKFV 175
+ E K S+V LK GG F+
Sbjct: 120 DEEDLRK----LFSKVAEALKPGGVFI 142
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 0.003
Identities = 21/197 (10%), Positives = 45/197 (22%), Gaps = 42/197 (21%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
F + + + ++ A ++ G G +
Sbjct: 12 RFEPRAYLRNNY--APPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQ 69
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWR-----VMDMTSM---------- 128
+ F IT DF +V ++ R + W +
Sbjct: 70 LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129
Query: 129 ----------------------QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR 166
D ++ L+A+ + + L +
Sbjct: 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQ---RALDHITT 186
Query: 167 LLKSGGKFVCLTLAESH 183
LL+ GG + + E
Sbjct: 187 LLRPGGHLLLIGALEES 203
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 659 | |||
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.79 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.77 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.76 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.75 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 99.73 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 99.73 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.72 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 99.72 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.71 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.71 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 99.7 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.7 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.7 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.69 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.69 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.67 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.66 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.66 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.65 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.65 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.65 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.62 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.62 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.61 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.6 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.6 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.56 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.55 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.53 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.51 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.48 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.46 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.46 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.45 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.43 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.43 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.42 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.4 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.38 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.38 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.38 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.36 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.36 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.32 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.31 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.31 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.29 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.28 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.26 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.26 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.26 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.24 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.23 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.22 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.18 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.12 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.09 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.06 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.02 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.95 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.94 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.94 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.94 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.9 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.89 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.88 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.82 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.82 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.74 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.69 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.65 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.58 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.57 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.57 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.54 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.53 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.5 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.36 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.34 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.33 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.28 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.26 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.24 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.21 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.2 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.18 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.11 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.11 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.09 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.08 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.07 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.07 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.99 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.97 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.97 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.9 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.78 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.78 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 97.7 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.7 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.66 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.59 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.56 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.51 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.38 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 97.24 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.23 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.1 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.05 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 97.02 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 96.94 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 96.9 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 96.82 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 96.8 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 96.77 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 96.77 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 96.77 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 96.76 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 96.72 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 96.71 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 96.7 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 96.69 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 96.6 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 96.55 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 96.55 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 96.54 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 96.53 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 96.51 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 96.5 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 96.44 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 96.41 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 96.38 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.28 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 96.18 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.13 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 96.07 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 95.87 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 95.8 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 95.79 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 95.75 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 95.73 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 95.7 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 95.7 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 95.62 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 95.62 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 95.6 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.45 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.4 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 95.39 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.23 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.19 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.18 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 95.17 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.17 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 95.04 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 94.99 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.89 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 94.7 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 94.62 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.61 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 94.43 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.36 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 94.2 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 94.15 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 94.08 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 93.95 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.8 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.7 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 93.69 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 93.57 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 93.23 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 93.09 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 92.88 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 92.87 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 92.53 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 92.49 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 92.46 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 92.44 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 92.4 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 92.33 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 92.26 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 92.21 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.1 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 92.1 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.04 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 91.88 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 91.88 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 91.67 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 91.44 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 91.38 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.04 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 90.89 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 90.81 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 90.63 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 90.56 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 90.44 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 90.29 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 90.19 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 90.14 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.12 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 90.09 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 89.93 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.55 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.42 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 89.1 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 88.86 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 88.72 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 88.43 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 88.43 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 88.06 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.8 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 87.75 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 87.49 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 87.43 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 87.13 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 87.02 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 86.96 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 86.79 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 86.3 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 86.26 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 85.89 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 85.77 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 85.36 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 85.26 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 85.23 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 85.03 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 84.8 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 84.48 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 84.45 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 84.22 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 84.17 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 84.12 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 83.95 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 83.9 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 83.55 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 83.47 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 83.41 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.3 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.18 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 83.03 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 82.87 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 82.59 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 82.34 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 82.02 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 81.96 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 81.61 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 81.51 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 81.38 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 81.2 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 81.03 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 80.9 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 80.64 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 80.33 |
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.2e-18 Score=172.89 Aligned_cols=143 Identities=17% Similarity=0.290 Sum_probs=120.3
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHH
Q 006149 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (659)
Q Consensus 27 ~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~ 106 (659)
+.++|+++|++. ..+|.+....+.+...+.+++.. .++.+|||+|||+|..+..|++.|+ +|||||+|+.+|++
T Consensus 9 ~~e~W~~~~~~~--~~~w~~~~~~~~l~~~~~~~l~~---~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~ 82 (229)
T d2bzga1 9 TLEEWQDKWVNG--KTAFHQEQGHQLLKKHLDTFLKG---KSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQE 82 (229)
T ss_dssp CHHHHHHHHHHT--CCTTCCTTCCHHHHHHHHHHHTT---CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred CHHHHHHHHccC--CCCCccCCCCHHHHHHHHHhcCC---CCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHH
Confidence 568999999876 34555555667777777787765 5788999999999999999999998 99999999999998
Q ss_pred HHHHhhc------------------CCCCcEEEEeecCCCC-CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhc
Q 006149 107 MLRRNVR------------------DRSDMRWRVMDMTSMQ-FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRL 167 (659)
Q Consensus 107 ~~~~~~~------------------~~~~i~~~~~D~~~l~-~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rv 167 (659)
+++++.. ...+++++++|+.+++ ...+.||+|++.++++++.... ++.+++++.++
T Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~-----r~~~~~~~~~~ 157 (229)
T d2bzga1 83 FFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGD-----RKCYADTMFSL 157 (229)
T ss_dssp HHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGG-----HHHHHHHHHHT
T ss_pred HHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchh-----hHHHHHHHHhh
Confidence 8877542 2257899999999884 5678999999999999987655 78999999999
Q ss_pred cccCeEEEEEEcC
Q 006149 168 LKSGGKFVCLTLA 180 (659)
Q Consensus 168 LkpGG~lvi~~~~ 180 (659)
|||||++++.++.
T Consensus 158 LkpgG~~~l~~~~ 170 (229)
T d2bzga1 158 LGKKFQYLLCVLS 170 (229)
T ss_dssp EEEEEEEEEEEEE
T ss_pred cCCcceEEEEEcc
Confidence 9999998888765
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.77 E-value=7.3e-19 Score=172.32 Aligned_cols=119 Identities=28% Similarity=0.374 Sum_probs=103.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (659)
..+.+.+.+++. ++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++.......+.++++|+.++++
T Consensus 25 ~~~~~~~~~~l~-----~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~ 98 (226)
T d1ve3a1 25 ETLEPLLMKYMK-----KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSF 98 (226)
T ss_dssp HHHHHHHHHSCC-----SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCS
T ss_pred HHHHHHHHHhcC-----CCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccccccccccccccccc
Confidence 334445556653 578999999999999999999886 89999999999999988887777889999999999999
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++||+|++.++++|+.+.+ ..++|+++.++|||||++++....
T Consensus 99 ~~~~fD~I~~~~~l~~~~~~d-----~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 99 EDKTFDYVIFIDSIVHFEPLE-----LNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CTTCEEEEEEESCGGGCCHHH-----HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCcCceEEEEecchhhCChhH-----HHHHHHHHHHHcCcCcEEEEEEcC
Confidence 999999999999999986433 678999999999999999887654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.76 E-value=1.3e-18 Score=172.98 Aligned_cols=117 Identities=18% Similarity=0.229 Sum_probs=103.2
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMD 132 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~ 132 (659)
...+.+.+.. +++.+|||+|||+|.++..|++.+. +|+|||+|+.|++.+++++...+ +++.++++|+.++|+++
T Consensus 5 ~~~l~~~~~~---~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (234)
T d1xxla_ 5 LGLMIKTAEC---RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 80 (234)
T ss_dssp HHHHHHHHTC---CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred HHHHHHHhCC---CCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccccccccccccccccccc
Confidence 3446667665 7899999999999999999999875 99999999999999988765544 67999999999999999
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++||+|++.++++++.++. .+++++.++|||||++++.+...
T Consensus 81 ~~fD~v~~~~~l~~~~d~~-------~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 81 DSFDIITCRYAAHHFSDVR-------KAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp TCEEEEEEESCGGGCSCHH-------HHHHHHHHHEEEEEEEEEEEECB
T ss_pred cccceeeeeceeecccCHH-------HHHHHHHHeeCCCcEEEEEEcCC
Confidence 9999999999999987654 99999999999999999987653
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.75 E-value=2e-18 Score=170.43 Aligned_cols=114 Identities=16% Similarity=0.263 Sum_probs=99.7
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcc
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETF 135 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sF 135 (659)
+++.+.. +++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++....+ ++++++++|+.++|+++++|
T Consensus 7 ll~~~~l---~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f 82 (231)
T d1vl5a_ 7 LMQIAAL---KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 82 (231)
T ss_dssp HHHHHTC---CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHhcCC---CCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence 4455554 6789999999999999999999886 99999999999999987765444 78999999999999999999
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
|+|++..+++|+.+++ ++++++.++|||||++++.++..
T Consensus 83 D~v~~~~~l~~~~d~~-------~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 83 HIVTCRIAAHHFPNPA-------SFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp EEEEEESCGGGCSCHH-------HHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccccccccccccCCHH-------HHHHHHHHhcCCCcEEEEEeCCC
Confidence 9999999999997755 89999999999999999987653
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.73 E-value=6.9e-18 Score=173.17 Aligned_cols=117 Identities=17% Similarity=0.209 Sum_probs=94.8
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC----CCC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl----~~d 590 (659)
.+.||++|++. +++. +++|+||||||+|+|++++.+.++.|..+|++|||||+|+++|++||+. .++
T Consensus 63 e~~Yhe~l~h~-~~~~--------~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~ 133 (290)
T d1xj5a_ 63 ECAYQEMITHL-PLCS--------IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYED 133 (290)
T ss_dssp HHHHHHHHHHH-HHTT--------SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGS
T ss_pred hhHHHHHHhhH-HHhh--------CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccC
Confidence 46799999874 4433 3789999999999999999999999888999999999999999999953 357
Q ss_pred CCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecCc-----hHH-HHHHH
Q 006149 591 KSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNSF-----PEA-AVQLG 634 (659)
Q Consensus 591 ~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~~-----~~~-~~~l~ 634 (659)
+|++++ .+|+|.+||+.|+++| +++|+++.|+- ... ...++
T Consensus 134 ~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L---~~~Gi~v~q~~s~~~~~~~~~~i~~ 210 (290)
T d1xj5a_ 134 PRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARAL---RPGGVVCTQAESLWLHMDIIEDIVS 210 (290)
T ss_dssp TTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHE---EEEEEEEEECCCTTTCHHHHHHHHH
T ss_pred CCcEEEEccHHHHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhc---CCCcEEEEecCCcHHHHHHHHHHHh
Confidence 787333 4699999999999999 99999999872 223 33556
Q ss_pred hhcc-CCccc
Q 006149 635 KLVK-FQHLE 643 (659)
Q Consensus 635 ~~~~-f~~~~ 643 (659)
++.+ |++..
T Consensus 211 ~l~~vF~~~~ 220 (290)
T d1xj5a_ 211 NCREIFKGSV 220 (290)
T ss_dssp HHHHHCSSCE
T ss_pred hhhhhcccce
Confidence 6666 88653
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=6.4e-18 Score=172.89 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC----CCCC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG----FTQD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg----l~~d 590 (659)
.+.||++|++ ++++. +++|++|||||+|+|++++.+.++.+..+|++|||||+|+++|++||. ..+|
T Consensus 61 e~~Yhe~l~h-~~l~~--------~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d 131 (285)
T d2o07a1 61 EFSYQEMIAN-LPLCS--------HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSS 131 (285)
T ss_dssp HHHHHHHHHH-HHHTT--------SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGC
T ss_pred HHHHHHHhcc-Hhhhh--------CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCC
Confidence 4689998887 44443 378999999999999999999999888899999999999999999993 3468
Q ss_pred CCeeEE-----------------------------ecccchhHHHHHHHhhccCCCCcEEEecCc-----hHHHH-HHHh
Q 006149 591 KSLKVF-----------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNSF-----PEAAV-QLGK 635 (659)
Q Consensus 591 ~rl~vf-----------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~~-----~~~~~-~l~~ 635 (659)
+|++++ .+|+|.+||+.|+++| +++|+++.|+. ..... .++.
T Consensus 132 ~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L---~~~Gi~v~q~~s~~~~~~~~~~~~~t 208 (285)
T d2o07a1 132 SKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTAL---KEDGVLCCQGECQWLHLDLIKEMRQF 208 (285)
T ss_dssp TTEEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHE---EEEEEEEEEEECTTTCHHHHHHHHHH
T ss_pred CCceEEEccHHHHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhc---CCCCeEEEeccchhhhHHHHHHHHHH
Confidence 888433 4799999999999999 99999999872 22223 4455
Q ss_pred hcc-CCccc
Q 006149 636 LVK-FQHLE 643 (659)
Q Consensus 636 ~~~-f~~~~ 643 (659)
+.+ |+++.
T Consensus 209 l~~~F~~v~ 217 (285)
T d2o07a1 209 CQSLFPVVA 217 (285)
T ss_dssp HHHHCSEEE
T ss_pred HHhcCCeee
Confidence 555 88764
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.72 E-value=1.1e-17 Score=167.27 Aligned_cols=137 Identities=17% Similarity=0.242 Sum_probs=105.2
Q ss_pred HhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHH
Q 006149 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (659)
Q Consensus 28 ~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~ 107 (659)
.++|+..|.... ..+......+..++......+..+|||+|||+|.++..|++.|. +|+|||+|+.|++.+
T Consensus 9 a~~Yd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a 79 (251)
T d1wzna1 9 AEYYDTIYRRRI--------ERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVA 79 (251)
T ss_dssp GGGHHHHTHHHH--------HTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred HHHHHHHHHhhh--------hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeecccccccc
Confidence 568888776551 11111222233333222224677999999999999999999987 999999999999999
Q ss_pred HHHhhcCCCCcEEEEeecCCCCCCCCcccEEEec-ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 108 LRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDK-GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 108 ~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~-g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+++....+.+++++++|+.+++++ ++||+|++. ++++++...+ ..++|++++++|||||++++...
T Consensus 80 ~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~-----~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 80 RRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEED-----LRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp HHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccchheehhhhhcccc-cccchHhhhhhhhhcCChHH-----HHHHHHHHHHHcCCCcEEEEEec
Confidence 988877777899999999999987 689999986 4666653222 67999999999999999998654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.72 E-value=2.2e-17 Score=170.12 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CCC
Q 006149 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QDK 591 (659)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d~ 591 (659)
+.||++|++ ++++. +++|++|||||+|+|++++.+.++.|..+|++|||||+|+++|++||... +|+
T Consensus 90 ~~YhE~l~h-~pl~~--------~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dp 160 (312)
T d2b2ca1 90 FSYQEMLAH-LPMFA--------HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 160 (312)
T ss_dssp SHHHHHHHH-HHHHH--------SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCT
T ss_pred HHHHHHhhh-HHHhc--------CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCC
Confidence 579999987 44443 37899999999999999999999988889999999999999999999653 578
Q ss_pred CeeEE-----------------------------ecccchhHHHHHHHhhccCCCCcEEEecC-----chHHHH-HHHhh
Q 006149 592 SLKVF-----------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS-----FPEAAV-QLGKL 636 (659)
Q Consensus 592 rl~vf-----------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~-----~~~~~~-~l~~~ 636 (659)
|++++ .+||+.+||+.|+++| +++|+++.|+ .+.... .++.+
T Consensus 161 rv~i~i~Da~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L---~~~Gi~v~q~~s~~~~~~~~~~i~~~l 237 (312)
T d2b2ca1 161 KLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDAL---KEDGILSSQGESVWLHLPLIAHLVAFN 237 (312)
T ss_dssp TEEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHE---EEEEEEEEECCCTTTCHHHHHHHHHHH
T ss_pred CeEEEEchHHHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhc---CCCcEEEEecCChHHhHHHHHHHHHHh
Confidence 88433 4699999999999999 9999999987 123333 34444
Q ss_pred cc-CCccc
Q 006149 637 VK-FQHLE 643 (659)
Q Consensus 637 ~~-f~~~~ 643 (659)
.+ |+++.
T Consensus 238 ~~vF~~v~ 245 (312)
T d2b2ca1 238 RKIFPAVT 245 (312)
T ss_dssp HHHCSEEE
T ss_pred hhccceEE
Confidence 44 88754
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.71 E-value=2.5e-17 Score=168.07 Aligned_cols=117 Identities=18% Similarity=0.234 Sum_probs=91.9
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC------
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------ 588 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~------ 588 (659)
.+.||++|++. ++.. +++|++|||||+|+|++++.+.++.+ .+|++|||||+|+++|++||++.
T Consensus 55 e~~Yhe~l~~~-~l~~--------~~~p~~vLiiG~G~G~~~~~~l~~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~ 124 (276)
T d1mjfa_ 55 ERSYHEPLVHP-AMLA--------HPKPKRVLVIGGGDGGTVREVLQHDV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEA 124 (276)
T ss_dssp THHHHHHHHHH-HHHH--------SSCCCEEEEEECTTSHHHHHHTTSCC-SEEEEEESCHHHHHHHHHHTCTTTTHHHH
T ss_pred hhHHHHHhhcc-hhhc--------CCCCceEEEecCCchHHHHHHHHhCC-ceEEEecCCHHHHHHHHHhhhhccchhhh
Confidence 46799999874 4433 37899999999999999999888754 59999999999999999999875
Q ss_pred ----CCCCeeEE----------------------------ecccchhHHHHHHHhhccCCCCcEEEecC-----chH-HH
Q 006149 589 ----QDKSLKVF----------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS-----FPE-AA 630 (659)
Q Consensus 589 ----~d~rl~vf----------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~-----~~~-~~ 630 (659)
.|+|++++ .+|+|.+||+.|+++| +++|+++.|+ .+. ..
T Consensus 125 ~~~~~d~rv~i~~~Da~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L---~~~Gv~v~q~~s~~~~~~~~~ 201 (276)
T d1mjfa_ 125 MLNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDAL---NNPGIYVTQAGSVYLFTDELI 201 (276)
T ss_dssp HHTTCCSSEEEEESCHHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHE---EEEEEEEEEEEETTTSHHHHH
T ss_pred hhccCCCCceEEEChHHHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhc---CCCceEEEecCCcchhHHHHH
Confidence 37888433 4599999999999999 9999999987 122 23
Q ss_pred HHHHhhcc-CCcccc
Q 006149 631 VQLGKLVK-FQHLEI 644 (659)
Q Consensus 631 ~~l~~~~~-f~~~~~ 644 (659)
..++++.+ |+++..
T Consensus 202 ~~~~tl~~~F~~v~~ 216 (276)
T d1mjfa_ 202 SAYKEMKKVFDRVYY 216 (276)
T ss_dssp HHHHHHHHHCSEEEE
T ss_pred HHHHHHHhhCCeeEE
Confidence 34555555 887653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=6.7e-18 Score=166.55 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=96.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.++.+|||+|||+|.++..++..++.+|+|||+|+.||+.+++++.... ++++|+++|+.++++++++||+|++.++++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 4668999999999999999887766799999999999999988875543 578999999999999899999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+.+++ ..+++++++++|||||.+++.+..
T Consensus 139 h~~~~~-----~~~~l~~i~~~Lk~~G~~~i~~~~ 168 (222)
T d2ex4a1 139 HLTDQH-----LAEFLRRCKGSLRPNGIIVIKDNM 168 (222)
T ss_dssp GSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cchhhh-----hhhHHHHHHHhcCCcceEEEEEcc
Confidence 987654 568999999999999999998753
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.70 E-value=5.2e-17 Score=165.31 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=95.6
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc----CCCCC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFTQD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F----gl~~d 590 (659)
...||++|++. +++. +++|++|||||+|+|++++.+.++.+..+|++|||||+|+++|++|| +.-+|
T Consensus 58 e~~Yhe~l~h~-~l~~--------~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d 128 (274)
T d1iy9a_ 58 EFVYHEMVAHV-PLFT--------HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDD 128 (274)
T ss_dssp HHHHHHHHHHH-HHHH--------SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTS
T ss_pred hhhchhhhccc-hhhc--------cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccC
Confidence 46799988874 4433 37889999999999999999999988889999999999999999999 34478
Q ss_pred CCeeEE-----------------------------ecccchhHHHHHHHhhccCCCCcEEEecCc-----hHH-HHHHHh
Q 006149 591 KSLKVF-----------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNSF-----PEA-AVQLGK 635 (659)
Q Consensus 591 ~rl~vf-----------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~~-----~~~-~~~l~~ 635 (659)
+|++++ .+||+.+||+.|+++| +++|+++.|+- +.. ...+++
T Consensus 129 ~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L---~~~Gv~v~q~~s~~~~~~~~~~i~~t 205 (274)
T d1iy9a_ 129 PRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKAL---KEDGIFVAQTDNPWFTPELITNVQRD 205 (274)
T ss_dssp TTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHE---EEEEEEEEECCCTTTCHHHHHHHHHH
T ss_pred CCeEEEechHHHHHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhc---CCCceEEEecCCccccHHHHHHHHHh
Confidence 898544 3589999999999999 99999999872 233 335566
Q ss_pred hcc-CCccc
Q 006149 636 LVK-FQHLE 643 (659)
Q Consensus 636 ~~~-f~~~~ 643 (659)
+.+ |+++.
T Consensus 206 l~~~F~~v~ 214 (274)
T d1iy9a_ 206 VKEIFPITK 214 (274)
T ss_dssp HHTTCSEEE
T ss_pred hhhhcCceE
Confidence 666 98754
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=2.3e-17 Score=163.66 Aligned_cols=100 Identities=22% Similarity=0.314 Sum_probs=87.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEec-ccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDK-GGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~-g~l~~ 146 (659)
++.+|||+|||+|.++..|++.|. +|+|+|+|+.|++.++++.. ..++++|+.++++++++||+|++. .+++|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~-----~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~ 115 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----KNVVEAKAEDLPFPSGAFEAVLALGDVLSY 115 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----SCEEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc-----cccccccccccccccccccceeeecchhhh
Confidence 567999999999999999999987 89999999999998876542 246789999999999999999986 57888
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.+++ ++|+++.++|||||++++....
T Consensus 116 ~~d~~-------~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 116 VENKD-------KAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp CSCHH-------HHHHHHHHHEEEEEEEEEEEEB
T ss_pred hhhHH-------HHHHHHHhhcCcCcEEEEEECC
Confidence 87654 8999999999999999998754
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.70 E-value=3e-17 Score=167.73 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=95.6
Q ss_pred CCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecc
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g 142 (659)
..++.+|||||||+|.++..|++. +. +|+|+|+|+.+++.++++....+ .+++++++|+.++|+++++||+|++..
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 143 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 143 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccc
Confidence 467899999999999999999987 55 89999999999998887765543 579999999999999999999999999
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++|+.+.. ++++++.++|||||++++.++.
T Consensus 144 ~l~h~~d~~-------~~l~~~~~~LkpgG~l~~~~~~ 174 (282)
T d2o57a1 144 AFLHSPDKL-------KVFQECARVLKPRGVMAITDPM 174 (282)
T ss_dssp CGGGCSCHH-------HHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhhccCHH-------HHHHHHHHhcCCCcEEEEEEee
Confidence 999997654 8999999999999999998754
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=2.7e-17 Score=168.72 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=93.2
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d 590 (659)
++-||++|++ ++++. +++|++|||||+|+|++++.+.++.|..+|++|||||+|+++|++||+.. +|
T Consensus 72 e~~YhE~l~h-~pl~~--------~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d 142 (295)
T d1inla_ 72 EFMYHEMLAH-VPMFL--------HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDD 142 (295)
T ss_dssp HHHHHHHHHH-HHHHH--------SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGC
T ss_pred hhhhhhhhcc-hhHhh--------CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccC
Confidence 4789998887 45544 37899999999999999999999999889999999999999999999654 57
Q ss_pred CCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecCc-----hH-HHHHHH
Q 006149 591 KSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNSF-----PE-AAVQLG 634 (659)
Q Consensus 591 ~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~~-----~~-~~~~l~ 634 (659)
+|++++ .+|++.+||+.|+++| +++|+++.|+. ++ ....++
T Consensus 143 ~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L---~~~Gi~v~q~~sp~~~~~~~~~i~~ 219 (295)
T d1inla_ 143 PRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDAL---KEDGVFSAETEDPFYDIGWFKLAYR 219 (295)
T ss_dssp TTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHE---EEEEEEEEECCCTTTTHHHHHHHHH
T ss_pred CCcEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhc---CCCcEEEEecCChhhhhHHHHHHHH
Confidence 888333 3599999999999999 99999999872 22 223445
Q ss_pred hhcc-CCcc
Q 006149 635 KLVK-FQHL 642 (659)
Q Consensus 635 ~~~~-f~~~ 642 (659)
++.+ |++.
T Consensus 220 tl~~vF~~v 228 (295)
T d1inla_ 220 RISKVFPIT 228 (295)
T ss_dssp HHHHHCSEE
T ss_pred HHHhhccee
Confidence 5555 8754
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=6.4e-17 Score=167.61 Aligned_cols=118 Identities=11% Similarity=0.137 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-----CCC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----FTQ 589 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-----l~~ 589 (659)
++.||++|++ ++++. +++|++|||||+|+|++++.+.++.|..+|++|||||+|+++|++||. .-+
T Consensus 60 e~~Yhe~l~h-~~l~~--------~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~ 130 (312)
T d1uira_ 60 EYIYHETLVH-PAMLT--------HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFD 130 (312)
T ss_dssp HHHHHHHHHH-HHHHH--------SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGG
T ss_pred HHHHHHHHhh-hhhhh--------CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccC
Confidence 4579999997 44443 378999999999999999999999888899999999999999999993 336
Q ss_pred CCCeeEE--------------------------------ecccchhHHHHHHHhhccCCCCcEEEecCc------hHHHH
Q 006149 590 DKSLKVF--------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNSF------PEAAV 631 (659)
Q Consensus 590 d~rl~vf--------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~~------~~~~~ 631 (659)
|+|++++ .+|+|.+|++.|+++| +++|+++.|+- .+...
T Consensus 131 d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L---~p~Gvlv~~~~s~~~~~~~~~~ 207 (312)
T d1uira_ 131 DPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHL---NPGGVMGMQTGMILLTHHRVHP 207 (312)
T ss_dssp CTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTE---EEEEEEEEEEEEECC---CHHH
T ss_pred CCceEEEEchHHHHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhc---CCCceEEEecCCcccchHHHHH
Confidence 7888333 2489999999999999 99999999761 22334
Q ss_pred HHH-hhcc-CCcccc
Q 006149 632 QLG-KLVK-FQHLEI 644 (659)
Q Consensus 632 ~l~-~~~~-f~~~~~ 644 (659)
.+. ++.+ |+++.-
T Consensus 208 ~i~~tl~~~F~~V~~ 222 (312)
T d1uira_ 208 VVHRTVREAFRYVRS 222 (312)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhCceEEE
Confidence 454 4444 887643
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.67 E-value=1.4e-16 Score=154.05 Aligned_cols=133 Identities=18% Similarity=0.322 Sum_probs=106.2
Q ss_pred CCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHH
Q 006149 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (659)
Q Consensus 25 f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i 104 (659)
+.++.||.+.|.... .+.+ +...+.. ..+.+|||||||+|..+..|++.|+ +|+|+|+|+.++
T Consensus 3 ~~d~~~~~~~~~~~~---------~~~~----~~~~~~~---~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l 65 (198)
T d2i6ga1 3 VRDENYFTEKYGLTR---------THSD----VLAAAKV---VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASM 65 (198)
T ss_dssp CCSHHHHHHHHCBCC---------CCHH----HHHHHTT---SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH
T ss_pred cchHHHHhcccCCCC---------CHHH----HHHHccc---CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHH
Confidence 457788888775441 1112 2222322 2346999999999999999999997 999999999999
Q ss_pred HHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 105 SDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 105 ~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.++++....+ +++.+.+.|+.++++ +++||+|++..+++++...+ ..++++++.++|+|||++++.+..
T Consensus 66 ~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~-----~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 66 ANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEAQT-----IPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp HHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSCTTH-----HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred HHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeecCCHHH-----HHHHHHHHHHHcCCCcEEEEEEec
Confidence 98877765544 678999999999876 58999999999999987655 679999999999999999998764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.66 E-value=8e-17 Score=153.87 Aligned_cols=108 Identities=17% Similarity=0.278 Sum_probs=93.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC-------------CCCcEEEEeecCCCC-CCC
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-------------RSDMRWRVMDMTSMQ-FMD 132 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~-------------~~~i~~~~~D~~~l~-~~~ 132 (659)
.++.+|||+|||+|..+..|+++|+ +|||+|+|+.||+.+++++... ...+.++++|+.+++ ...
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 97 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 97 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccc
Confidence 5889999999999999999999998 9999999999999998876432 345789999999985 345
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.+||+|++.++++++.... ...+++++.++|||||++++..+.
T Consensus 98 ~~~D~i~~~~~l~~l~~~~-----~~~~~~~i~~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 98 GHCAAFYDRAAMIALPADM-----RERYVQHLEALMPQACSGLLITLE 140 (201)
T ss_dssp HSEEEEEEESCGGGSCHHH-----HHHHHHHHHHHSCSEEEEEEEEES
T ss_pred cceeEEEEEeeeEecchhh-----hHHHHHHHHHhcCCCcEEEEEEcc
Confidence 7899999999999986543 679999999999999999887765
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.66 E-value=2.6e-16 Score=157.11 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=99.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (659)
......+.+.+... ..++.+|||+|||+|.++..|++.|. +|+|||+|+.|++.|+++....+.+++++++|+.++++
T Consensus 21 ~~~~~~~~~~~~~~-~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~ 98 (246)
T d1y8ca_ 21 KKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI 98 (246)
T ss_dssp HHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC
T ss_pred HHHHHHHHHHHHHh-CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhcc
Confidence 33344455555431 13457999999999999999999987 99999999999999988887777889999999999886
Q ss_pred CCCcccEEEec-ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 131 MDETFDVILDK-GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 131 ~~~sFDvVi~~-g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+ ++||+|++. ++++++.+.+ ...++|++++++|+|||.|++....
T Consensus 99 ~-~~fD~i~~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 99 N-RKFDLITCCLDSTNYIIDSD----DLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp S-CCEEEEEECTTGGGGCCSHH----HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred c-ccccccceeeeeeeccCCHH----HHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 4 789999986 5777776554 2778999999999999999976543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.65 E-value=1.7e-16 Score=160.09 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=95.7
Q ss_pred CCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
..+..+|||+|||+|..+..|+..++.+|++||+|+.|++.++++. ...+.++++++|+.++++++++||+|++.++++
T Consensus 91 ~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~-~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~ 169 (254)
T d1xtpa_ 91 GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKREL-AGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHT-TTSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccc-cccccceeEEccccccccCCCccceEEeecccc
Confidence 3567899999999999999988776668999999999999987765 344668999999999999999999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+.+++ ..++|++++++|+|||++++.+..
T Consensus 170 hl~d~d-----~~~~l~~~~~~LkpgG~iii~e~~ 199 (254)
T d1xtpa_ 170 YLTDAD-----FVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp GSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ccchhh-----hHHHHHHHHHhcCCCcEEEEEecC
Confidence 997654 678999999999999999997753
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.65 E-value=3.1e-16 Score=157.54 Aligned_cols=114 Identities=20% Similarity=0.250 Sum_probs=97.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC-CCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF-MDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~-~~~sFDvVi~~g~l 144 (659)
++.+|||+|||+|..+..+++.+..+|+|||+|+.||+.|++++.... .++.+.++|+...++ .+++||+|++.+++
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l 103 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 103 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence 678999999999999999999888899999999999999988875543 468999999988765 46789999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
+++..++. .+.++++++.++|||||+|++.....+.+
T Consensus 104 ~~~~~~~~---~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i 140 (252)
T d1ri5a_ 104 HYAFSTSE---SLDIAQRNIARHLRPGGYFIMTVPSRDVI 140 (252)
T ss_dssp GGGGSSHH---HHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred eecCCCHH---HHHHHHHHHhceeCCCCEEEEEecCHHHH
Confidence 99865432 37799999999999999999988764444
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=4.7e-16 Score=155.33 Aligned_cols=117 Identities=17% Similarity=0.074 Sum_probs=99.5
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (659)
....+.+.+.. .|+.+|||||||+|..+..|++....+|+|||+|+.+++.++++....+ ++++|+++|+.++ +
T Consensus 21 ~~~~l~~~~~l---~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~ 96 (245)
T d1nkva_ 21 KYATLGRVLRM---KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-V 96 (245)
T ss_dssp HHHHHHHHTCC---CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-C
T ss_pred HHHHHHHHcCC---CCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-c
Confidence 34446666655 6889999999999999999987632499999999999999888766554 4699999999997 4
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++||+|++.++++++.+.. +++++++++|||||++++.+..
T Consensus 97 ~~~~fD~v~~~~~~~~~~d~~-------~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 97 ANEKCDVAACVGATWIAGGFA-------GAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp CSSCEEEEEEESCGGGTSSSH-------HHHHHHTTSEEEEEEEEEEEEE
T ss_pred ccCceeEEEEEehhhccCCHH-------HHHHHHHHHcCcCcEEEEEecc
Confidence 679999999999999998765 9999999999999999998753
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=5.1e-16 Score=157.64 Aligned_cols=118 Identities=23% Similarity=0.347 Sum_probs=93.4
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC
Q 006149 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (659)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~ 127 (659)
.+..+...+...+....+.++.+|||+|||+|.++..|++.+ ..+++|+|+|+.+++.++++ .+++.|.++|+.+
T Consensus 65 ~~~~l~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~----~~~~~~~~~d~~~ 140 (268)
T d1p91a_ 65 HYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR----YPQVTFCVASSHR 140 (268)
T ss_dssp TTHHHHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH----CTTSEEEECCTTS
T ss_pred chHHHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc----cccccceeeehhh
Confidence 344444444433322112467899999999999999999884 35899999999999877554 4689999999999
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
+|+++++||+|++..++++ ++++.|+|||||++++.++...+.
T Consensus 141 l~~~~~sfD~v~~~~~~~~--------------~~e~~rvLkpgG~l~~~~p~~~~l 183 (268)
T d1p91a_ 141 LPFSDTSMDAIIRIYAPCK--------------AEELARVVKPGGWVITATPGPRHL 183 (268)
T ss_dssp CSBCTTCEEEEEEESCCCC--------------HHHHHHHEEEEEEEEEEEECTTTT
T ss_pred ccCCCCCEEEEeecCCHHH--------------HHHHHHHhCCCcEEEEEeeCCcch
Confidence 9999999999998766554 578999999999999999876554
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.7e-16 Score=155.65 Aligned_cols=152 Identities=13% Similarity=0.088 Sum_probs=105.6
Q ss_pred CCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHH
Q 006149 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (659)
Q Consensus 24 ~f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~ 103 (659)
+|...+||+.+|... ...+........+...+.+.+.. ...++.+|||+|||+|.++..++..++.+|+|+|+|+.+
T Consensus 10 ~f~~~~Y~~~~Y~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~ 86 (257)
T d2a14a1 10 HFLPRDYLATYYSFD--GSPSPEAEMLKFNLECLHKTFGP-GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRN 86 (257)
T ss_dssp HCCHHHHHHHHCCCC--CSCCHHHHHHHHHHHHHHHHHST-TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHH
T ss_pred hcChHHHHHHHhCcC--ccccHHHHHHHHHHHHHHHHhcc-cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHH
Confidence 467789999998765 22222111112223344444432 224577999999999999988887777689999999999
Q ss_pred HHHHHHHhhcCCCCcE-------------------------------EEEe----ecCCCCCCCCcccEEEecccccccC
Q 006149 104 ISDMLRRNVRDRSDMR-------------------------------WRVM----DMTSMQFMDETFDVILDKGGLDALM 148 (659)
Q Consensus 104 i~~~~~~~~~~~~~i~-------------------------------~~~~----D~~~l~~~~~sFDvVi~~g~l~~l~ 148 (659)
|+.++++.......+. .... +....+++.++||+|++.++++++.
T Consensus 87 i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 166 (257)
T d2a14a1 87 REELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC 166 (257)
T ss_dssp HHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC
T ss_pred HHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhc
Confidence 9999887654332211 1111 1222356788999999999999986
Q ss_pred CcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 149 ~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.... ....+++++.++|||||++++.++..
T Consensus 167 ~~~~---~~~~~l~~i~~~LkpGG~li~~~~~~ 196 (257)
T d2a14a1 167 CSLD---AYRAALCNLASLLKPGGHLVTTVTLR 196 (257)
T ss_dssp SSHH---HHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred ccHH---HHHHHHHHHHhccCCCcEEEEEEecc
Confidence 5332 26789999999999999999988653
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.61 E-value=2.3e-15 Score=148.32 Aligned_cols=108 Identities=11% Similarity=0.078 Sum_probs=89.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc---CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~---g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~ 141 (659)
+++.+|||+|||+|..+..|++. +..+|+|+|+|+.|++.++++..... .++.+.++|+.+++ .+.+|+|++.
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~~ 115 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVILN 115 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEEe
Confidence 36789999999999999999874 33599999999999999988776544 35666777776654 5689999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.+++++...+ ..++|++++++|||||.+++.+...
T Consensus 116 ~~l~~~~~~d-----~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 116 FTLQFLPPED-----RIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp SCGGGSCGGG-----HHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred eeccccChhh-----HHHHHHHHHHhCCCCceeecccccc
Confidence 9999986444 6699999999999999999987653
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=6.4e-16 Score=158.57 Aligned_cols=153 Identities=16% Similarity=0.245 Sum_probs=108.6
Q ss_pred hhhhhcccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEE
Q 006149 16 TDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGIT 95 (659)
Q Consensus 16 ~~lp~~~~~f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~Vt 95 (659)
+.+|..+.+-....+|+.++... .... ......+..++.. .+..+|||+|||+|..+..|++.|+ +|+
T Consensus 15 ~~~~d~Y~d~~~~~~~~~~~~~~--~~r~------~~~~~~l~~~l~~---~~~~~vLD~GcG~G~~~~~la~~g~-~v~ 82 (292)
T d1xvaa_ 15 EGIPDQYADGEAARVWQLYIGDT--RSRT------AEYKAWLLGLLRQ---HGCHRVLDVACGTGVDSIMLVEEGF-SVT 82 (292)
T ss_dssp TTSCCTTTTSHHHHHHHHHHHTT--CCBC------HHHHHHHHHHHHH---TTCCEEEESSCTTSHHHHHHHHTTC-EEE
T ss_pred cccchhhhcchHHHHHHHHhcch--hhhH------HHHHHHHHHHhhh---cCCCEEEEecCCCcHHHHHHHHcCC-eee
Confidence 44555444333466898876654 1111 2233445666654 4567999999999999999999997 899
Q ss_pred EEcCCHHHHHHHHHHhhcCCC-----CcEEEEeecCCCC---CCCCcccEEEecc-cccccCCcccchHHHHHHHHHHHh
Q 006149 96 NVDFSKVVISDMLRRNVRDRS-----DMRWRVMDMTSMQ---FMDETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKR 166 (659)
Q Consensus 96 gvD~S~~~i~~~~~~~~~~~~-----~i~~~~~D~~~l~---~~~~sFDvVi~~g-~l~~l~~~~~~~~~~~~~l~ei~r 166 (659)
|+|+|+.||+.|+++...... ...+..+|+..++ ...++||+|++.+ ++.|+.+..........+|+++.+
T Consensus 83 gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (292)
T d1xvaa_ 83 SVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS 162 (292)
T ss_dssp EEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHH
T ss_pred eccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHH
Confidence 999999999999877655443 2344555554321 1347899999764 788887655444457899999999
Q ss_pred ccccCeEEEEEEcC
Q 006149 167 LLKSGGKFVCLTLA 180 (659)
Q Consensus 167 vLkpGG~lvi~~~~ 180 (659)
+|||||+|++....
T Consensus 163 ~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 163 MVRPGGLLVIDHRN 176 (292)
T ss_dssp TEEEEEEEEEEEEC
T ss_pred HcCcCcEEEEeecC
Confidence 99999999987654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=8.9e-16 Score=149.00 Aligned_cols=98 Identities=22% Similarity=0.246 Sum_probs=86.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
+..+|||||||+|.++..+. .++|||+|+.+++.++++ ++.++++|+.++++++++||+|++..+|+|+
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~ 104 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR------GVFVLKGTAENLPLKDESFDFALMVTTICFV 104 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTTCEEEEEEESCGGGS
T ss_pred CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc------ccccccccccccccccccccccccccccccc
Confidence 45699999999999998773 579999999999877543 5899999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
.++. +++++++++|+|||++++.++...+
T Consensus 105 ~d~~-------~~l~~~~~~L~pgG~l~i~~~~~~~ 133 (208)
T d1vlma_ 105 DDPE-------RALKEAYRILKKGGYLIVGIVDRES 133 (208)
T ss_dssp SCHH-------HHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred cccc-------cchhhhhhcCCCCceEEEEecCCcc
Confidence 7654 8999999999999999999876544
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.56 E-value=9.4e-15 Score=149.12 Aligned_cols=105 Identities=21% Similarity=0.302 Sum_probs=93.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.++++......+++|.++|+.+++++ ++||+|++.+++
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~~l 104 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL 104 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCG
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CCceEEEEehhh
Confidence 45689999999999999999875 2 24899999999999999888766667899999999999876 579999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+|+.++. .++++++++|||||.+++.+.
T Consensus 105 ~~~~d~~-------~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 105 LHMTTPE-------TMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp GGCSSHH-------HHHHHHHHTEEEEEEEEEEEC
T ss_pred hcCCCHH-------HHHHHHHHHcCcCcEEEEEEC
Confidence 9998765 899999999999999999885
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.55 E-value=8.2e-15 Score=144.40 Aligned_cols=101 Identities=20% Similarity=0.267 Sum_probs=88.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
.+.+|||||||+|.++..|++.|. +|+|||+|+.+++.++++. ..++.++++|+.++++ +++||+|++.++++|+
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~---~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~ 94 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRL---KDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHI 94 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHS---CSCEEEEESCGGGCCC-SSCEEEEEEESCGGGC
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccc---cccccccccccccccc-ccccccccccceeEec
Confidence 457999999999999999998886 8999999999999886654 3479999999999876 5899999999999999
Q ss_pred CCcccchHHHHHHHHHHH-hccccCeEEEEEEcC
Q 006149 148 MEPELGHKLGNQYLSEVK-RLLKSGGKFVCLTLA 180 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~-rvLkpGG~lvi~~~~ 180 (659)
.++. .++.++. ++|+|||.+++..+.
T Consensus 95 ~d~~-------~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 95 DDPV-------ALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp SSHH-------HHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCHH-------HHHHHHHHHhcCCCceEEEEeCC
Confidence 7755 8899998 899999999998765
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.53 E-value=2.1e-14 Score=137.48 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=101.2
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecC
Q 006149 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (659)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~ 126 (659)
...+++..+...+.. .++.+|||+|||+|.++..++..+ .+|+++|+++.+++.++++....+ ++++++++|+.
T Consensus 17 t~~eir~~il~~l~~---~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~ 92 (186)
T d1l3ia_ 17 TAMEVRCLIMCLAEP---GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92 (186)
T ss_dssp CCHHHHHHHHHHHCC---CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred ChHHHHHHHHHhcCC---CCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh
Confidence 355777788888865 789999999999999999998875 499999999999999988776655 68999999999
Q ss_pred CCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 127 ~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+..++...||+|++.+...+ ...+++.+.+.|||||++++.....
T Consensus 93 ~~~~~~~~~D~v~~~~~~~~----------~~~~~~~~~~~LkpgG~lvi~~~~~ 137 (186)
T d1l3ia_ 93 EALCKIPDIDIAVVGGSGGE----------LQEILRIIKDKLKPGGRIIVTAILL 137 (186)
T ss_dssp HHHTTSCCEEEEEESCCTTC----------HHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred hcccccCCcCEEEEeCcccc----------chHHHHHHHHHhCcCCEEEEEeecc
Confidence 88777889999998876544 3488999999999999999887653
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.4e-14 Score=144.69 Aligned_cols=158 Identities=14% Similarity=0.101 Sum_probs=110.3
Q ss_pred hhhhcccCCCCHhhHHHHHhhcCCCCccccccch-hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEE
Q 006149 17 DLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEW-PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGIT 95 (659)
Q Consensus 17 ~lp~~~~~f~~~eyWd~~y~~~~~~~~fewy~~~-~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~Vt 95 (659)
.+...++.|...+||+.+|... ...+.....+ ......+.+.+.. ....+.+|||+|||+|..+...+...+.+|+
T Consensus 5 ~~~~~~~~f~~~~Y~~~~y~~~--~~~~~~~~~~~~~~~~~~~~~f~~-g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~ 81 (263)
T d2g72a1 5 AVASAYQRFEPRAYLRNNYAPP--RGDLCNPNGVGPWKLRCLAQTFAT-GEVSGRTLIDIGSGPTVYQLLSACSHFEDIT 81 (263)
T ss_dssp HHHHHGGGCCHHHHHHHHHSTT--TTCCSSTTSHHHHHHHHHHHHHHT-SCSCCSEEEEETCTTCCGGGTTGGGGCSEEE
T ss_pred hHHHHHhhcCHHHHHHHHhCcC--cccchhhhhhhhhHHHHHHHHcCC-CCCCCcEEEEeccCCCHHHHHHhcccCCeEE
Confidence 3556777899999999999765 2223222222 2223345555432 2245789999999999888766666566999
Q ss_pred EEcCCHHHHHHHHHHhhcCCCCc-------------------------------EEEEeecCCC------CCCCCcccEE
Q 006149 96 NVDFSKVVISDMLRRNVRDRSDM-------------------------------RWRVMDMTSM------QFMDETFDVI 138 (659)
Q Consensus 96 gvD~S~~~i~~~~~~~~~~~~~i-------------------------------~~~~~D~~~l------~~~~~sFDvV 138 (659)
|+|+|+.|++.++++........ .....|+... +.+.++||+|
T Consensus 82 ~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V 161 (263)
T d2g72a1 82 MTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADAL 161 (263)
T ss_dssp EECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEE
T ss_pred EEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCee
Confidence 99999999998877654322111 2344565542 2445789999
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++..+++++.... ....++++++.++|||||++++.+..
T Consensus 162 ~~~~~l~~i~~~~---~~~~~~l~~~~~~LkPGG~li~~~~~ 200 (263)
T d2g72a1 162 VSAFCLEAVSPDL---ASFQRALDHITTLLRPGGHLLLIGAL 200 (263)
T ss_dssp EEESCHHHHCSSH---HHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred eeHHHHHHHccCH---HHHHHHHHHHHHHcCCCCEEEEeccc
Confidence 9999999986432 12779999999999999999998764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=1.6e-13 Score=139.88 Aligned_cols=116 Identities=9% Similarity=0.118 Sum_probs=96.1
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMD 132 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~ 132 (659)
.+..++.....+++.+|||||||.|.++..+++. |. +|+|||+|+.+++.++++..+.+ ..+.+...|..++ +
T Consensus 40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~ 115 (280)
T d2fk8a1 40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---A 115 (280)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---C
T ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---c
Confidence 3455555555688999999999999999999877 65 99999999999999988876655 4567777777664 4
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++||.|++.+++.|+.... ...+|+++.++|||||++++.+..
T Consensus 116 ~~fD~i~si~~~eh~~~~~-----~~~~f~~i~~~LkpgG~~~i~~i~ 158 (280)
T d2fk8a1 116 EPVDRIVSIEAFEHFGHEN-----YDDFFKRCFNIMPADGRMTVQSSV 158 (280)
T ss_dssp CCCSEEEEESCGGGTCGGG-----HHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred cchhhhhHhhHHHHhhhhh-----HHHHHHHHHhccCCCceEEEEEee
Confidence 7899999999999987654 679999999999999999987643
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=3.1e-13 Score=137.90 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=97.3
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCC
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~ 133 (659)
+..++......++.+|||||||.|.++..+++. |. +|+||++|+..++.++++....+ .++++..+|..+++ +
T Consensus 51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~ 126 (285)
T d1kpga_ 51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---E 126 (285)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---C
T ss_pred HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---c
Confidence 344444455689999999999999999998877 65 99999999999999988766554 67899999988764 6
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+||.|++.+++.|+.... ...+++++.++|||||++++.+.+
T Consensus 127 ~fD~i~si~~~eh~~~~~-----~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 127 PVDRIVSIGAFEHFGHER-----YDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp CCSEEEEESCGGGTCTTT-----HHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred cccceeeehhhhhcCchh-----HHHHHHHHHhhcCCCCcEEEEEEe
Confidence 899999999999987654 569999999999999999987765
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.46 E-value=1.7e-13 Score=131.86 Aligned_cols=116 Identities=21% Similarity=0.222 Sum_probs=94.1
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQF 130 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~~~D~~~l~~ 130 (659)
...+.+.+.. .++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++..... .++++..+|+.+ ++
T Consensus 41 t~lLi~~l~~---~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~ 115 (194)
T d1dusa_ 41 TKILVENVVV---DKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NV 115 (194)
T ss_dssp HHHHHHHCCC---CTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TC
T ss_pred HHHHHHhCCc---CCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hh
Confidence 3456666654 6789999999999999999988765 99999999999999887654432 468999999987 56
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++||+|++...+++..+ ..+++++++.++|+|||+++++...
T Consensus 116 ~~~~fD~Ii~~~p~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 116 KDRKYNKIITNPPIRAGKE------VLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TTSCEEEEEECCCSTTCHH------HHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ccCCceEEEEcccEEecch------hhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 7889999999888765321 2568999999999999999876644
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=3.3e-13 Score=138.10 Aligned_cols=120 Identities=14% Similarity=0.175 Sum_probs=95.9
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCC
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~ 133 (659)
+..++......++.+|||||||.|.++..+++. |. +|+|+++|+..++.++++....+ .++.+...|.. +.++
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~~~~ 125 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFDE 125 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCCC
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---cccc
Confidence 333344445589999999999999999999876 65 99999999999998888876654 45677777753 4578
Q ss_pred cccEEEecccccccCCccc--chHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 134 TFDVILDKGGLDALMEPEL--GHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~--~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+||.|++.+++.|+.+... +....+.+++++.++|||||++++.+.+
T Consensus 126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 9999999999999976421 1234779999999999999999987765
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.43 E-value=3e-13 Score=133.87 Aligned_cols=127 Identities=14% Similarity=0.181 Sum_probs=102.4
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEee
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D 124 (659)
|......+...+..-+...+.+|+.+|||+|||+|..+..+++.+ .+.|+|+|+|+.|++.+++++ ...+++..+.+|
T Consensus 52 w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a-~~~~ni~~i~~d 130 (230)
T d1g8sa_ 52 WNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDAC-AERENIIPILGD 130 (230)
T ss_dssp CCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHT-TTCTTEEEEECC
T ss_pred ECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH-hhhcccceEEEe
Confidence 666666777777777776667899999999999999999999973 468999999999999887765 456788889988
Q ss_pred cCCC-CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 125 MTSM-QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 125 ~~~l-~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.... ++.+..+|+++....+++... ...++.+++++|||||++++....
T Consensus 131 ~~~~~~~~~~~~~v~~i~~~~~~~~~-------~~~~l~~~~r~LKpgG~~~i~~k~ 180 (230)
T d1g8sa_ 131 ANKPQEYANIVEKVDVIYEDVAQPNQ-------AEILIKNAKWFLKKGGYGMIAIKA 180 (230)
T ss_dssp TTCGGGGTTTCCCEEEEEECCCSTTH-------HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred eccCcccccccceeEEeeccccchHH-------HHHHHHHHHHhcccCceEEEEeec
Confidence 8876 356677888777666665432 458899999999999999987643
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=7.1e-14 Score=138.18 Aligned_cols=114 Identities=17% Similarity=0.088 Sum_probs=89.8
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFM 131 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~ 131 (659)
...+.+.+.. ++.+|||||||+|..+..+++.+..+|++||+|+.+++.++++......++.++..|+... +++
T Consensus 43 ~~~la~~~~~----~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (229)
T d1zx0a1 43 MHALAAAASS----KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP 118 (229)
T ss_dssp HHHHHHHHTT----TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC
T ss_pred HHHHHHhhcc----CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 3345555543 6789999999999999999988656899999999999999888877777788888877654 577
Q ss_pred CCcccEEEe-----cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 132 DETFDVILD-----KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 132 ~~sFDvVi~-----~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+++||.|+. ...+.++.+ ...++++++|+|||||+|++.+
T Consensus 119 ~~~fD~i~fD~~~~~~~~~~~~~-------~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 119 DGHFDGILYDTYPLSEETWHTHQ-------FNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp TTCEEEEEECCCCCBGGGTTTHH-------HHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccceeecccccccccccccC-------HHHHHHHHHHHcCCCcEEEEEe
Confidence 899999973 333333332 4589999999999999998754
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.42 E-value=1.7e-13 Score=137.63 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=87.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++...++.++.+.++|+.+ .++.++||+|+++...+.
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~~ 196 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL 196 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH
T ss_pred CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhcccccc
Confidence 4789999999999999999998886 89999999999999988777777788999999876 356789999998754443
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
...++.++.++|||||+++++.+.
T Consensus 197 ----------l~~l~~~~~~~LkpGG~lilSgil 220 (254)
T d2nxca1 197 ----------HAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp ----------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ----------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 457899999999999999997654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.40 E-value=7.3e-13 Score=128.61 Aligned_cols=140 Identities=12% Similarity=0.183 Sum_probs=103.1
Q ss_pred hhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHH
Q 006149 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDM 107 (659)
Q Consensus 29 eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~ 107 (659)
+||.+.+... ..+++.|-+.|.++ ... ++..|||||||+|..+..||+. +..+++|||+++.++..+
T Consensus 2 ~~~~~~~~~~-~~~p~~~~~~w~~~-------F~~----~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a 69 (204)
T d2fcaa1 2 DFLAENADIA-ISNPADYKGKWNTV-------FGN----DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTA 69 (204)
T ss_dssp HHHHHTTTTB-CSCGGGGTTCHHHH-------HTS----CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred cchhhCccch-hcCHHHHHhHHHHH-------cCC----CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHH
Confidence 3555544443 34566676676432 332 4568999999999999999987 446999999999999999
Q ss_pred HHHhhcCC-CCcEEEEeecCCCC--CCCCcccEEEecccccccCCcccchHH-HHHHHHHHHhccccCeEEEEEEcC
Q 006149 108 LRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDKGGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 108 ~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDvVi~~g~l~~l~~~~~~~~~-~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.++....+ .|+.++++|+..+. ++++++|.|+......+.......... ...+++++.++|||||.|++.|-.
T Consensus 70 ~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~ 146 (204)
T d2fcaa1 70 VQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 146 (204)
T ss_dssp HHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred HHHHHHHhccCchhcccchhhhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 88776554 68999999998874 789999999976665543221100000 247999999999999999998754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.38 E-value=7.9e-13 Score=129.28 Aligned_cols=112 Identities=19% Similarity=0.189 Sum_probs=92.6
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (659)
+.+...+.+.+.. +++.+|||+|||+|..+..|++. + ...|+++|+++.+++.++++..... .++.++++|..+
T Consensus 61 P~~~a~~l~~l~l---~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~ 137 (213)
T d1dl5a1 61 PSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY 137 (213)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred chhhHHHHHhhhc---cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHH
Confidence 4555667777765 78999999999999999999876 3 3589999999999999988776544 688999999988
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
..+.+++||+|++.+++++++ +++.+.|||||++++..
T Consensus 138 ~~~~~~~fD~I~~~~~~~~~p-------------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 138 GVPEFSPYDVIFVTVGVDEVP-------------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CCGGGCCEEEEEECSBBSCCC-------------HHHHHHEEEEEEEEEEB
T ss_pred ccccccchhhhhhhccHHHhH-------------HHHHHhcCCCcEEEEEE
Confidence 777778999999999888753 34678899999998854
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.38 E-value=6.2e-13 Score=129.65 Aligned_cols=126 Identities=14% Similarity=0.098 Sum_probs=91.2
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEee
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D 124 (659)
|......+...+..- .....+|+.+|||+|||+|..+..+++. +.+.|+|+|+|+.+++.+++++. ...++.++++|
T Consensus 35 w~p~rsklaa~i~~g-~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~-~~~ni~~i~~d 112 (209)
T d1nt2a_ 35 WVPWRSKLAAMILKG-HRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR-ERNNIIPLLFD 112 (209)
T ss_dssp CCGGGCHHHHHHHTS-CCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH-HCSSEEEECSC
T ss_pred eCCcchHHHHHHhcc-ccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhh-ccCCceEEEee
Confidence 544444454444433 2234578999999999999999999986 55689999999999999877764 45789999999
Q ss_pred cCCCCCCCCcccEEEe-cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 125 MTSMQFMDETFDVILD-KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 125 ~~~l~~~~~sFDvVi~-~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.+.+.....+|.+.. ...+.+.. ....++.+++++|||||++++....
T Consensus 113 ~~~~~~~~~~~~~vd~v~~~~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 113 ASKPWKYSGIVEKVDLIYQDIAQKN-------QIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp TTCGGGTTTTCCCEEEEEECCCSTT-------HHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccCccccccccceEEEEEecccChh-------hHHHHHHHHHHHhccCCeEEEEEEc
Confidence 9987654444444332 12232221 1458899999999999999988753
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.1e-12 Score=133.06 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=85.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc------CC-CeEEEEcCCHHHHHHHHHHhhcCC--CCcE--EEEeecCC------CC
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA------GF-HGITNVDFSKVVISDMLRRNVRDR--SDMR--WRVMDMTS------MQ 129 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~------g~-~~VtgvD~S~~~i~~~~~~~~~~~--~~i~--~~~~D~~~------l~ 129 (659)
++..+|||||||+|.++..++.. +. ..++|||+|+.|++.++++..... .++. +.+.++.. .+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 34558999999999998877653 21 368999999999999988764322 3343 33433322 24
Q ss_pred CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhc
Q 006149 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186 (659)
Q Consensus 130 ~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~ 186 (659)
.++++||+|++.++++++.++. .++++++++|+|||.++++.........
T Consensus 119 ~~~~~fD~I~~~~~l~~~~d~~-------~~l~~l~~~LkpgG~l~i~~~~~~~~~~ 168 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYVKDIP-------ATLKFFHSLLGTNAKMLIIVVSGSSGWD 168 (280)
T ss_dssp SSCCCEEEEEEESCGGGCSCHH-------HHHHHHHHTEEEEEEEEEEEECTTSHHH
T ss_pred CCCCceeEEEEccceecCCCHH-------HHHHHHHhhCCCCCEEEEEEecCcchHH
Confidence 5688999999999999997654 9999999999999999998876554433
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.36 E-value=1.3e-12 Score=131.41 Aligned_cols=117 Identities=20% Similarity=0.274 Sum_probs=98.3
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhc----CCCCcEEEEe
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVR----DRSDMRWRVM 123 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~----~~~~i~~~~~ 123 (659)
|+.-...+..++.. .|+.+|||+|||+|.++..|+.. | .++|+++|+++.+++.++++... ...++.+.++
T Consensus 81 ypkD~s~Ii~~l~i---~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~ 157 (264)
T d1i9ga_ 81 YPKDAAQIVHEGDI---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157 (264)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred chHHHHHHHHHhCC---CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec
Confidence 55556677777776 79999999999999999999987 4 46999999999999998776543 2368999999
Q ss_pred ecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 124 D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
|+.+.++++++||.|+. +++++. .++.++.++|||||++++...+-
T Consensus 158 d~~~~~~~~~~fDaV~l-----dlp~P~-------~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 158 DLADSELPDGSVDRAVL-----DMLAPW-------EVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CGGGCCCCTTCEEEEEE-----ESSCGG-------GGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccccccccCCCcceEEE-----ecCCHH-------HHHHHHHhccCCCCEEEEEeCcc
Confidence 99999999999999984 356665 78999999999999999988663
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.36 E-value=1.7e-12 Score=130.04 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=87.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.+..+|||||||+|.++..+++.. ...++++|+ +.+++.++++....+ .+++++.+|+.+. . ..+||+|++..+
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~D~v~~~~v 155 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-L-PRKADAIILSFV 155 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-SSCEEEEEEESC
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-c-ccchhheeeccc
Confidence 456799999999999999999873 458999998 557887877765544 6799999999763 2 357999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+++.+.+ ..++|++++++|||||++++.+..
T Consensus 156 lh~~~d~~-----~~~~L~~~~~~LkPGG~l~i~e~~ 187 (253)
T d1tw3a2 156 LLNWPDHD-----AVRILTRCAEALEPGGRILIHERD 187 (253)
T ss_dssp GGGSCHHH-----HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cccCCchh-----hHHHHHHHHHhcCCCcEEEEEecc
Confidence 99986554 568999999999999999998864
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=3e-12 Score=125.99 Aligned_cols=119 Identities=16% Similarity=0.174 Sum_probs=94.8
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcC------CCCc
Q 006149 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD------RSDM 118 (659)
Q Consensus 47 y~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~------~~~i 118 (659)
+...+.+...++++|.. ..+++.+|||+|||+|..+..|++. + ...|+++|+++.+++.+++..... ..++
T Consensus 56 ~is~P~~~a~~le~L~~-~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~ 134 (224)
T d1i1na_ 56 TISAPHMHAYALELLFD-QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV 134 (224)
T ss_dssp EECCHHHHHHHHHHTTT-TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE
T ss_pred hhhhhHHHHHHHHHHhh-ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccce
Confidence 34445566677777732 2267899999999999999999886 3 358999999999999987766542 2578
Q ss_pred EEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 119 RWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 119 ~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+.++|......++++||+|++.+++++++ ..+.+.|||||++++...
T Consensus 135 ~~~~gD~~~~~~~~~~fD~I~~~~~~~~ip-------------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 135 QLVVGDGRMGYAEEAPYDAIHVGAAAPVVP-------------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp EEEESCGGGCCGGGCCEEEEEECSBBSSCC-------------HHHHHTEEEEEEEEEEES
T ss_pred EEEEeecccccchhhhhhhhhhhcchhhcC-------------HHHHhhcCCCcEEEEEEc
Confidence 999999998887888999999999888753 357789999999998654
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=3.5e-12 Score=132.62 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=86.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||||||+|.++..+++.|..+|+++|.|+ ++..+++.....+ .+++++++|+.++++++++||+|++....+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 5789999999999999999999988999999997 4455555544433 679999999999999999999999988877
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
.+..... ...++..+.++|||||+++
T Consensus 117 ~~~~e~~----~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESM----MDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCC----HHHHHHHHHHHEEEEEEEE
T ss_pred eeccchh----HHHHHHHHHhccCCCeEEE
Confidence 7655331 5688999999999999885
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=6.2e-12 Score=129.66 Aligned_cols=105 Identities=20% Similarity=0.189 Sum_probs=86.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||||||+|.++..+++.|..+|+++|.|+.++..+ +..... ..++.++++|+.++++++++||+|++....
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~-~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAM-DIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 112 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHH-HHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence 36789999999999999999999988999999999887543 333332 367999999999999888999999998777
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEE
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi 176 (659)
+.+.... ....++....++|||||+++-
T Consensus 113 ~~~~~e~----~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 113 YFLLFES----MLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TTBTTTC----HHHHHHHHHHHHEEEEEEEES
T ss_pred eeccccc----ccHHHHHHHHhcCCCCcEEec
Confidence 6654432 266888888999999999873
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.29 E-value=5.2e-12 Score=126.08 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=86.7
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~ 131 (659)
.+..++.. .|+.+|||+|||+|.++..|++. + .++|+++|+++.+++.++++.... ..++++..+|+.+. ++
T Consensus 76 ~Ii~~l~i---~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~ 151 (250)
T d1yb2a1 76 YIIMRCGL---RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-IS 151 (250)
T ss_dssp -----CCC---CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CC
T ss_pred HHHHHcCC---CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cc
Confidence 34455544 78999999999999999999986 3 469999999999999998876553 36899999999886 56
Q ss_pred CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++||.|+.. +.++. .++.++.++|||||++++...+
T Consensus 152 ~~~fD~V~ld-----~p~p~-------~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 152 DQMYDAVIAD-----IPDPW-------NHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp SCCEEEEEEC-----CSCGG-------GSHHHHHHTEEEEEEEEEEESS
T ss_pred cceeeeeeec-----CCchH-------HHHHHHHHhcCCCceEEEEeCC
Confidence 7899999852 34444 7799999999999999987765
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.28 E-value=7.6e-12 Score=122.91 Aligned_cols=112 Identities=12% Similarity=0.070 Sum_probs=91.5
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 006149 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (659)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (659)
..+.+...+++.+.. +++.+|||||||+|.++..|+..+. +|+++|+++.+++.++++. ....++.++.+|....
T Consensus 54 ~~p~~~a~ml~~L~l---~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~-~~~~nv~~~~~d~~~g 128 (224)
T d1vbfa_ 54 TALNLGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLL-SYYNNIKLILGDGTLG 128 (224)
T ss_dssp CCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHH-TTCSSEEEEESCGGGC
T ss_pred ehhhhHHHHHHHhhh---cccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHH-hcccccccccCchhhc
Confidence 345566667777765 7899999999999999999998864 9999999999999887665 4557999999998875
Q ss_pred CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
..+.++||+|++.+++.+++ ..+.+.|||||++++..
T Consensus 129 ~~~~~pfD~Iiv~~a~~~ip-------------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 129 YEEEKPYDRVVVWATAPTLL-------------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp CGGGCCEEEEEESSBBSSCC-------------HHHHHTEEEEEEEEEEE
T ss_pred chhhhhHHHHHhhcchhhhh-------------HHHHHhcCCCCEEEEEE
Confidence 54568899999988877653 34668899999998854
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=8.8e-12 Score=129.60 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=88.6
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc----------CCCCcEEEE
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR----------DRSDMRWRV 122 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~----------~~~~i~~~~ 122 (659)
...+.+.+.. +++++|||+|||+|..+..++.. +..+++|||+|+.+++.+.+.... ...++++++
T Consensus 140 ~~~~~~~~~l---~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~ 216 (328)
T d1nw3a_ 140 VAQMIDEIKM---TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 216 (328)
T ss_dssp HHHHHHHSCC---CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred HHHHHHHcCC---CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence 3344455543 68899999999999999998875 667899999999999887654332 235799999
Q ss_pred eecCCCCCCCCcc--cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 123 MDMTSMQFMDETF--DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 123 ~D~~~l~~~~~sF--DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+|+.++++.+..| |+|++++.++ . ++ ....+.++.+.|||||++++...
T Consensus 217 gd~~~~~~~~~~~~advi~~~~~~f-~--~~-----~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 217 GDFLSEEWRERIANTSVIFVNNFAF-G--PE-----VDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp CCTTSHHHHHHHHHCSEEEECCTTT-C--HH-----HHHHHHHHHTTCCTTCEEEESSC
T ss_pred CcccccccccccCcceEEEEcceec-c--hH-----HHHHHHHHHHhCCCCcEEEEecc
Confidence 9999988776555 6777765443 2 22 56899999999999999988653
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.26 E-value=1.6e-11 Score=120.97 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=97.3
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~ 123 (659)
|......+...+..-+.....+|+.+|||+|||+|..+..|++. | .+.|+|+|+|+.+++.+++++ ....++..+..
T Consensus 51 w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a-~~~~~~~~i~~ 129 (227)
T d1g8aa_ 51 WNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV-EERRNIVPILG 129 (227)
T ss_dssp CCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-SSCTTEEEEEC
T ss_pred ECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH-HhcCCceEEEE
Confidence 65555667777777666667789999999999999999999987 4 369999999999999887665 45678888999
Q ss_pred ecCCC---CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 124 DMTSM---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 124 D~~~l---~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|.... +.....+|+|+.. +.+. + ....++.++.++|||||++++...+
T Consensus 130 d~~~~~~~~~~~~~vD~i~~d--~~~~---~----~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 130 DATKPEEYRALVPKVDVIFED--VAQP---T----QAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp CTTCGGGGTTTCCCEEEEEEC--CCST---T----HHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ECCCcccccccccceEEEEEE--cccc---c----hHHHHHHHHHHhcccCCeEEEEEEC
Confidence 88764 2344678888753 2221 1 1458999999999999999988654
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=8e-12 Score=129.17 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=85.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||||||+|.++..+++.|..+|+++|.|+.+.. +.+..... ..++.++++|+.+++++.++||+|++....+
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~-a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY-AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHH-HHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhh-hhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 57899999999999999999998779999999986644 44443333 3579999999999999999999999987777
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
.+.... ..+.++..+.++|||||+++
T Consensus 112 ~l~~e~----~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 112 CLFYES----MLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp TBTBTC----CHHHHHHHHHHHEEEEEEEE
T ss_pred eeccHH----HHHHHHHHHHhcCCCCeEEE
Confidence 655432 26789999999999999986
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.24 E-value=2.5e-11 Score=117.61 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=88.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCcccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDvVi~~g~ 143 (659)
....|||||||+|..+..+|.. +..+++|+|+++.++..+.++....+ .++.++++|+.++. ++++++|.|+....
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 3468999999999999999987 45789999999999999888776544 78999999998874 78899999986554
Q ss_pred ccccCCcccchHH-HHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 144 LDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 144 l~~l~~~~~~~~~-~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
-.+........+. -..+|+.+.++|||||.+++.|-..+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~ 150 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG 150 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCcc
Confidence 3322111100000 25899999999999999999885433
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.23 E-value=2.3e-11 Score=121.93 Aligned_cols=106 Identities=21% Similarity=0.125 Sum_probs=87.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.++++....+ .++.++.+|+.+ +.+ ..||+|++..+
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~v 156 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFV 156 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESC
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhcccc
Confidence 35679999999999999999987 3358999998 667887777665543 679999999886 444 46999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
||++.+.+ ..++|++++++|||||++++++..
T Consensus 157 Lh~~~d~~-----~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 157 LLNWSDED-----ALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp GGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCcHH-----HHHHHHHHHhhcCCcceeEEEEec
Confidence 99986544 678999999999999999998864
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.22 E-value=1.1e-11 Score=120.86 Aligned_cols=139 Identities=13% Similarity=0.074 Sum_probs=109.0
Q ss_pred CCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHH
Q 006149 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKV 102 (659)
Q Consensus 24 ~f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~ 102 (659)
.|....|+...|......-....+...+.+...+++.+.. .++.+|||||||+|..+..|+.. | .+|+++|.++.
T Consensus 37 ~Fvp~~~~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~l---~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~ 112 (215)
T d1jg1a_ 37 LSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIANL---KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPE 112 (215)
T ss_dssp GGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHTC---CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHH
T ss_pred hcCCHHHhhcccccCCcccchhhhhhhhhhHHHHHHhhcc---CccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHH
Confidence 4677777777776652111222344556777778888876 78999999999999999999876 5 47999999999
Q ss_pred HHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 103 VISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 103 ~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+++.++++....+ .++.++++|..+...+.++||.|+..+++..++ ..+...|+|||++++..-
T Consensus 113 l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip-------------~~l~~qL~~gGrLv~pv~ 177 (215)
T d1jg1a_ 113 LVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIP-------------EPLIEQLKIGGKLIIPVG 177 (215)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSCC-------------HHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecccccCC-------------HHHHHhcCCCCEEEEEEc
Confidence 9999988776654 789999999998766678999999999888753 235678999999988653
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=4.1e-11 Score=120.68 Aligned_cols=116 Identities=16% Similarity=0.252 Sum_probs=92.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeec
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~ 125 (659)
|+.-...+..++.. .|+.+|||+|||+|.++..|+.. + .++|+++|+++.+++.+++.....+ .++.+...|+
T Consensus 88 ypkd~~~Ii~~l~i---~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~ 164 (266)
T d1o54a_ 88 YPKDSSFIAMMLDV---KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI 164 (266)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG
T ss_pred chHHHHHHHHhhCC---CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc
Confidence 45555667777776 79999999999999999999986 3 3689999999999999988776544 4677777886
Q ss_pred CCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 126 ~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.. .++...||.|+. +++++. .+++++.++|||||++++...+-
T Consensus 165 ~~-~~~~~~~D~V~~-----d~p~p~-------~~l~~~~~~LKpGG~lv~~~P~~ 207 (266)
T d1o54a_ 165 SE-GFDEKDVDALFL-----DVPDPW-------NYIDKCWEALKGGGRFATVCPTT 207 (266)
T ss_dssp GG-CCSCCSEEEEEE-----CCSCGG-------GTHHHHHHHEEEEEEEEEEESSH
T ss_pred cc-cccccceeeeEe-----cCCCHH-------HHHHHHHhhcCCCCEEEEEeCcc
Confidence 54 456678999873 345554 78999999999999999987653
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.7e-10 Score=119.26 Aligned_cols=116 Identities=19% Similarity=0.275 Sum_probs=89.2
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhc------------CC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVR------------DR 115 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~------------~~ 115 (659)
|+.-...+..++.. .|+.+|||+|||+|.++..|++. | .+.|+++|+++.+++.+++.... ..
T Consensus 83 ypkD~~~Il~~l~i---~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~ 159 (324)
T d2b25a1 83 FPKDINMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP 159 (324)
T ss_dssp CHHHHHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred ccccHHHHHHHhCC---CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 44555667777776 78999999999999999999986 4 36899999999999988776542 12
Q ss_pred CCcEEEEeecCCCC--CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 116 SDMRWRVMDMTSMQ--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 116 ~~i~~~~~D~~~l~--~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.++.+.+.|+.+.. +++.+||.|+. | ++++. .++.++.++|||||++++...+
T Consensus 160 ~nv~~~~~di~~~~~~~~~~~fD~V~L----D-~p~P~-------~~l~~~~~~LKpGG~lv~~~P~ 214 (324)
T d2b25a1 160 DNVDFIHKDISGATEDIKSLTFDAVAL----D-MLNPH-------VTLPVFYPHLKHGGVCAVYVVN 214 (324)
T ss_dssp CCEEEEESCTTCCC-------EEEEEE----C-SSSTT-------TTHHHHGGGEEEEEEEEEEESS
T ss_pred cceeEEecchhhcccccCCCCcceEee----c-CcCHH-------HHHHHHHHhccCCCEEEEEeCC
Confidence 57999999998763 45678999974 3 34444 6799999999999999987754
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=2.3e-10 Score=115.47 Aligned_cols=110 Identities=18% Similarity=0.136 Sum_probs=86.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.+.+|||+|||+|..+..++.. +..+|+++|+|+.+++.+++.+...+ .++.++++|+.+ ++++.+||+|+++...-
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCB
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchhh
Confidence 5679999999999999999876 45699999999999998876655444 479999999987 45668999999975532
Q ss_pred cc------------------CCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 146 AL------------------MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 146 ~l------------------~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.. ...+++.....+++..+.++|+|||.+++..
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi 237 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 237 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence 11 1112233448899999999999999998853
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.06 E-value=2.3e-10 Score=118.51 Aligned_cols=135 Identities=17% Similarity=0.120 Sum_probs=102.1
Q ss_pred CccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcE
Q 006149 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMR 119 (659)
Q Consensus 42 ~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~ 119 (659)
....+|.+....+..+..+++ ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++....++ .+++
T Consensus 124 ~~tG~flDqr~~r~~~~~~~~-----~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~ 198 (324)
T d2as0a2 124 QKTGFFLDQRENRLALEKWVQ-----PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMK 198 (324)
T ss_dssp SSSCCCSTTHHHHHHHGGGCC-----TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEE
T ss_pred cccCcccchhhHHHHHHhhcC-----CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccce
Confidence 345577777677777776663 588999999999999999999887799999999999999987776665 4689
Q ss_pred EEEeecCCC----CCCCCcccEEEecccccccCCcc--cchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 120 WRVMDMTSM----QFMDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 120 ~~~~D~~~l----~~~~~sFDvVi~~g~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++++|+.+. +....+||+|++........... ........++..+.++|+|||++++++.+.
T Consensus 199 ~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 199 FIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp EEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred eeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 999998763 33467899999754332211111 011225678899999999999999998763
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.02 E-value=4.3e-10 Score=110.14 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=89.6
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc----C---CCeEEEEcCCHHHHHHHHHHhhc------CCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G---FHGITNVDFSKVVISDMLRRNVR------DRS 116 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~----g---~~~VtgvD~S~~~i~~~~~~~~~------~~~ 116 (659)
.+.....+++++.. ..+++.+|||||||+|.++..|+.. | ..+|+++|+++.+++.+++.... ...
T Consensus 63 ~P~~~a~~l~~L~~-~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~ 141 (223)
T d1r18a_ 63 APHMHAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG 141 (223)
T ss_dssp CHHHHHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHhh-ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCcc
Confidence 34556667777631 1267899999999999999888765 2 13799999999999988665422 225
Q ss_pred CcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 117 DMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 117 ~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
++.+.++|..+...+.++||.|++.+++..++ ..+.+.|||||++++...
T Consensus 142 nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p-------------~~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 142 QLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP-------------TELINQLASGGRLIVPVG 191 (223)
T ss_dssp SEEEEESCGGGCCGGGCSEEEEEECSCBSSCC-------------HHHHHTEEEEEEEEEEES
T ss_pred EEEEEecccccccccccceeeEEEEeechhch-------------HHHHHhcCCCcEEEEEEe
Confidence 89999999998766778999999999887653 346789999999988654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.95 E-value=1.3e-09 Score=100.26 Aligned_cols=114 Identities=13% Similarity=0.145 Sum_probs=84.7
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-CCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QFMD 132 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~~~~ 132 (659)
.+..++.. .-.+.+|||+|||+|.++...+.+|..+|+++|.++.+++.+++.....+ .+++++++|+... +...
T Consensus 4 ~~fn~l~~--~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~ 81 (152)
T d2esra1 4 AIFNMIGP--YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT 81 (152)
T ss_dssp HHHHHHCS--CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred HHHHHHHh--hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccc
Confidence 34455543 12578999999999999999999998899999999999998876655443 4689999998874 4557
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHH--hccccCeEEEEEEc
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTL 179 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~--rvLkpGG~lvi~~~ 179 (659)
++||+|+...... .......+..+. ++|+|||.+++...
T Consensus 82 ~~fDiIf~DPPy~--------~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 82 GRFDLVFLDPPYA--------KETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp SCEEEEEECCSSH--------HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cccceeEechhhc--------cchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 8999998643322 112445666554 57999999987653
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.94 E-value=5.3e-09 Score=100.61 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=74.7
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEee
Q 006149 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124 (659)
Q Consensus 45 ewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D 124 (659)
+.|...+.+...+...+.....-.+.+|||+|||+|.++..++..|...|+|+|+++.+++.+++.......+..++++|
T Consensus 23 ~qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d 102 (201)
T d1wy7a1 23 EQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGD 102 (201)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESC
T ss_pred ccCCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECc
Confidence 33444445544333322211123578999999999999999988887799999999999998877766666788999999
Q ss_pred cCCCCCCCCcccEEEeccccccc
Q 006149 125 MTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 125 ~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
+..+ +++||+|+++..+...
T Consensus 103 ~~~~---~~~fD~Vi~nPP~~~~ 122 (201)
T d1wy7a1 103 VSEF---NSRVDIVIMNPPFGSQ 122 (201)
T ss_dssp GGGC---CCCCSEEEECCCCSSS
T ss_pred hhhh---CCcCcEEEEcCccccc
Confidence 8875 4679999998776543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.94 E-value=1.6e-09 Score=103.57 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=99.5
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (659)
.+.+...+.+++.. .++..+||++||+|..+..+++. +..+|+|+|.++.|++.++++...-..++.++++++.++
T Consensus 8 ~pVll~evi~~l~~---~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~ 84 (192)
T d1m6ya2 8 IPVMVREVIEFLKP---EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREA 84 (192)
T ss_dssp CCTTHHHHHHHHCC---CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGH
T ss_pred CchHHHHHHHhhCC---CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhH
Confidence 44556667788765 78899999999999999998886 446999999999999999888766567899999998875
Q ss_pred C-----CCCCcccEEEeccccc--ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 129 Q-----FMDETFDVILDKGGLD--ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 129 ~-----~~~~sFDvVi~~g~l~--~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
. +..++||.|+....+. .+.....+.......|..+.++|+|||+++++++.
T Consensus 85 ~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 85 DFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred HHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 3 4567999987432221 12222223344789999999999999999999985
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.94 E-value=1.8e-09 Score=108.15 Aligned_cols=118 Identities=12% Similarity=0.064 Sum_probs=90.4
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEe
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVM 123 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~ 123 (659)
|+.....-+..+...+. ++.+|||+|||+|.++..++..|..+|+++|+++.+++.+++....++ .+++++++
T Consensus 90 f~~~~~~er~ri~~~~~-----~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~ 164 (260)
T d2frna1 90 FSPANVKERVRMAKVAK-----PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 164 (260)
T ss_dssp CCGGGHHHHHHHHHHCC-----TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred EecCCHHHHHHHHhhcC-----CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEc
Confidence 44444444455666653 689999999999999999998887799999999999998877665544 56999999
Q ss_pred ecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 124 D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+.++.. .+.||.|++...-. ...++..+.++|++||.+.+....
T Consensus 165 D~~~~~~-~~~~D~Ii~~~p~~-----------~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 165 DNRDFPG-ENIADRILMGYVVR-----------THEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp CTTTCCC-CSCEEEEEECCCSS-----------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred chHHhcc-CCCCCEEEECCCCc-----------hHHHHHHHHhhcCCCCEEEEEecc
Confidence 9998753 47899998642211 126788899999999998765543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.90 E-value=9.7e-10 Score=113.35 Aligned_cols=113 Identities=14% Similarity=0.050 Sum_probs=87.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC----CCCCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM----QFMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l----~~~~~sFDvVi~~g 142 (659)
++.+|||++||+|.++..++..+ .+|+++|+|+.+++.+++....++ .+++++++|+.+. +...++||+|++..
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~-~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGF-REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE-EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHhcC-CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 57899999999999999987644 599999999999999987776655 5799999998763 34567899999764
Q ss_pred cccccCCcc--cchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 143 GLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 143 ~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.-....... ........++..+.++|+|||.+++.+.+.
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 433222111 111225678999999999999999998763
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.89 E-value=1.8e-09 Score=103.40 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=69.0
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 006149 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (659)
Q Consensus 44 fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~ 123 (659)
.|.|....++...+...+.....-.+.+|||+|||+|.++..++..|..+|+++|+++.+++.+++. ..++.++++
T Consensus 24 leQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N----~~~~~~~~~ 99 (197)
T d1ne2a_ 24 LEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRN----CGGVNFMVA 99 (197)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHH----CTTSEEEEC
T ss_pred cccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHc----cccccEEEE
Confidence 3445555555554433332211236789999999999999999888888999999999999877543 357899999
Q ss_pred ecCCCCCCCCcccEEEeccccc
Q 006149 124 DMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 124 D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
|+.+++ ++||+|+++..+.
T Consensus 100 D~~~l~---~~fD~Vi~NPPfg 118 (197)
T d1ne2a_ 100 DVSEIS---GKYDTWIMNPPFG 118 (197)
T ss_dssp CGGGCC---CCEEEEEECCCC-
T ss_pred ehhhcC---CcceEEEeCcccc
Confidence 998864 7899999986654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.88 E-value=1.6e-09 Score=114.68 Aligned_cols=105 Identities=12% Similarity=0.036 Sum_probs=75.9
Q ss_pred CCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC----------CCCcEE-EEeecCCCCCC--
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD----------RSDMRW-RVMDMTSMQFM-- 131 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~----------~~~i~~-~~~D~~~l~~~-- 131 (659)
.+++++|||||||+|..+..++.. |.++++|||+|+.+++.++++.... ...+.+ ..+++...++.
T Consensus 214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~ 293 (406)
T d1u2za_ 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE 293 (406)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccc
Confidence 378999999999999999999876 6678999999999999887765431 122333 23444433211
Q ss_pred -CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 132 -DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 132 -~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
-..+|+|+.+..++ .++ +...|.++.+.|||||++++..
T Consensus 294 ~~~~adVV~inn~~f---~~~-----l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 294 LIPQCDVILVNNFLF---DED-----LNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HGGGCSEEEECCTTC---CHH-----HHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccceEEEEecccC---chH-----HHHHHHHHHHhcCCCcEEEEec
Confidence 13568888765332 222 6799999999999999998764
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.82 E-value=5.9e-09 Score=106.32 Aligned_cols=139 Identities=18% Similarity=0.068 Sum_probs=97.3
Q ss_pred CccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCc
Q 006149 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDM 118 (659)
Q Consensus 42 ~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i 118 (659)
....+|-+....+..+.+++.. ..++.+|||++||+|.++..++..|. +||+||.|+.+++.+++....++ .++
T Consensus 108 ~~tG~f~dqr~nr~~~~~~~~~--~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~ 184 (309)
T d2igta1 108 RHVGVFPEQIVHWEWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPI 184 (309)
T ss_dssp SCCSCCGGGHHHHHHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCE
T ss_pred CccccccchhHHHHHHHHHHhh--ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcE
Confidence 4445676767777777766642 13567999999999999999998887 89999999999998877654433 368
Q ss_pred EEEEeecCCC----CCCCCcccEEEecccccccCCcc---cchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 119 RWRVMDMTSM----QFMDETFDVILDKGGLDALMEPE---LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 119 ~~~~~D~~~l----~~~~~sFDvVi~~g~l~~l~~~~---~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
+|+++|+.+. ......||+|++...-....... ........++..+.++|+|||.+++++....+
T Consensus 185 ~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~ 256 (309)
T d2igta1 185 RWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIR 256 (309)
T ss_dssp EEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTT
T ss_pred EEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 9999999764 12357899999743322111110 00122556778889999999987766654333
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.82 E-value=8.2e-09 Score=106.12 Aligned_cols=132 Identities=19% Similarity=0.086 Sum_probs=95.1
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEE
Q 006149 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRW 120 (659)
Q Consensus 44 fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~ 120 (659)
..+|-+....+..+...+. ++.+|||++||+|.++..++..|...|++||+|+.+++.+++....++ .++++
T Consensus 125 tGlflDqR~~r~~l~~~~~-----~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~ 199 (317)
T d2b78a2 125 TGIFLDQRQVRNELINGSA-----AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQL 199 (317)
T ss_dssp CSSCGGGHHHHHHHHHTTT-----BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEE
T ss_pred cCCcHHHHHHHHHHHHHhh-----CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEE
Confidence 3466555555444544443 578999999999999999888888899999999999998877665444 46899
Q ss_pred EEeecCCC----CCCCCcccEEEecccccccC--CcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 121 RVMDMTSM----QFMDETFDVILDKGGLDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 121 ~~~D~~~l----~~~~~sFDvVi~~g~l~~l~--~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++|+.+. .-...+||+|+....-..-. ..........+++..+.++|+|||.+++.+.+
T Consensus 200 i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 200 VVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp EESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99999763 22456899999643211100 00011123668999999999999999998876
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.74 E-value=2.1e-08 Score=95.68 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=74.7
Q ss_pred CCCCeEEEECCCcchHHHHH----HHc----C-CCeEEEEcCCHHHHHHHHHHh------------------hcCC----
Q 006149 67 SPPPQILVPGCGNSRLSEHL----YDA----G-FHGITNVDFSKVVISDMLRRN------------------VRDR---- 115 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~L----a~~----g-~~~VtgvD~S~~~i~~~~~~~------------------~~~~---- 115 (659)
.+..+|+.+|||+|.-...| .+. + .-+|+|+|+++.+++.+++-. ....
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 35679999999999854333 332 1 126999999999999875321 0000
Q ss_pred ----------CCcEEEEeecCCCC-CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 116 ----------SDMRWRVMDMTSMQ-FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 116 ----------~~i~~~~~D~~~l~-~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
..+.+...+....+ .+.+.||+|+|.++|.++..+. ..++++.+++.|+|||+|++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~-----~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTT-----QEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHH-----HHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHH-----HHHHHHHHHHHhCCCcEEEEe
Confidence 12445555555432 3457899999999999986543 679999999999999987754
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.69 E-value=3e-08 Score=92.69 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=72.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC----CCCCCcccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM----QFMDETFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l----~~~~~sFDvVi~~g~ 143 (659)
.+.+|||+|||+|.++..++.+|. +++++|.++.+++.+++.....+...++...+...+ ....++||+|++...
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 578999999999999999988886 899999999999988776655444445555554432 245578999997654
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.. +.. .....+++ ..+|+|||++++...
T Consensus 120 Y~~--~~~---~~l~~l~~--~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 120 YAM--DLA---ALFGELLA--SGLVEAGGLYVLQHP 148 (171)
T ss_dssp TTS--CTT---HHHHHHHH--HTCEEEEEEEEEEEE
T ss_pred ccc--CHH---HHHHHHHH--cCCcCCCeEEEEEec
Confidence 332 111 11223332 358999999887654
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=4.2e-08 Score=92.74 Aligned_cols=104 Identities=11% Similarity=0.059 Sum_probs=80.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCC-CCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM-QFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~-~~~i~~~~~D~~~l-~~~~~sFDvVi~~g~l~ 145 (659)
.+.+|||++||+|.++.+.+.+|..+|+.||.++.+++.+++..... ..++.++++|+.+. .....+||+|+......
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 46799999999999999999999989999999999999887655443 35788999998764 33567899999765432
Q ss_pred ccCCcccchHHHHHHHHHHHh--ccccCeEEEEEEc
Q 006149 146 ALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTL 179 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~r--vLkpGG~lvi~~~ 179 (659)
. ......+..+.+ +|+++|.+++-..
T Consensus 123 ~--------~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 123 R--------GLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp T--------TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred c--------chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 1 114466666654 6999999888654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.58 E-value=8.8e-08 Score=94.64 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
....+|||||||+|.++..+++. +..+++..|..+ +++. .....+++++.+|+.+ +.+ ..|+++...+||
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~-----~~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh 150 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VIEN-----APPLSGIEHVGGDMFA-SVP--QGDAMILKAVCH 150 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTT-----CCCCTTEEEEECCTTT-CCC--CEEEEEEESSGG
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hhhc-----cCCCCCeEEecCCccc-ccc--cceEEEEehhhh
Confidence 34679999999999999999887 445899999854 3321 1234789999999986 444 359999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.+.+.+ ..++|+++++.|+|||++++.+..
T Consensus 151 ~~~de~-----~~~iL~~~~~aL~pgg~llI~e~v 180 (244)
T d1fp1d2 151 NWSDEK-----CIEFLSNCHKALSPNGKVIIVEFI 180 (244)
T ss_dssp GSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hCCHHH-----HHHHHHHHHHHcCCCcEEEEEEEE
Confidence 986654 679999999999999999999864
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.57 E-value=6.1e-08 Score=91.52 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=86.2
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM- 128 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l- 128 (659)
..++.+..++.. ...+.+|||++||+|.++.+.+.+|...|++||.++.+++.+++...... .+++++++|+.+.
T Consensus 27 ~vrealFn~l~~--~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l 104 (182)
T d2fhpa1 27 KVKESIFNMIGP--YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRAL 104 (182)
T ss_dssp HHHHHHHHHHCS--CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHHHH--hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhh
Confidence 455566666653 13578999999999999999999999899999999999998766554322 4789999998763
Q ss_pred ---CCCCCcccEEEecccccccCCcccchHHHHHHHHHHH--hccccCeEEEEEE
Q 006149 129 ---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLT 178 (659)
Q Consensus 129 ---~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~--rvLkpGG~lvi~~ 178 (659)
.-...+||+|+....... ......+..+. .+|+++|.+++-.
T Consensus 105 ~~~~~~~~~fDlIflDPPY~~--------~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 105 EQFYEEKLQFDLVLLDPPYAK--------QEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp HHHHHTTCCEEEEEECCCGGG--------CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhcccCCCcceEEechhhhh--------hHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 123568999996544321 11456777775 4799999887654
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.57 E-value=4.5e-08 Score=94.87 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=82.5
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC--
Q 006149 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-- 128 (659)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-- 128 (659)
..|..++.. ..+.+|||+|||+|..+..|+.. + .++|+++|+++.+++.+++.....+ .+++++.+|..+.
T Consensus 46 ~lL~~lv~~---~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~ 122 (214)
T d2cl5a1 46 QIMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIP 122 (214)
T ss_dssp HHHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred HHHHHHHHh---hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccccc
Confidence 344444443 34579999999999999999875 2 3599999999999998877665444 5699999998764
Q ss_pred ----CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 129 ----QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 129 ----~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+..++||+|+.-+.-+.. .....+.+..++|+|||++++-..
T Consensus 123 ~l~~~~~~~~~D~ifiD~~~~~~--------~~~~~l~~~~~lLkpGGvIv~Ddv 169 (214)
T d2cl5a1 123 QLKKKYDVDTLDMVFLDHWKDRY--------LPDTLLLEKCGLLRKGTVLLADNV 169 (214)
T ss_dssp GHHHHSCCCCEEEEEECSCGGGH--------HHHHHHHHHTTCEEEEEEEEESCC
T ss_pred chhhcccccccceeeeccccccc--------ccHHHHHHHhCccCCCcEEEEeCc
Confidence 2345789999965332221 123457788899999998877543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.54 E-value=1.8e-07 Score=93.54 Aligned_cols=121 Identities=14% Similarity=0.064 Sum_probs=82.1
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ 129 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~ 129 (659)
.+...+.+++.. .+..+|||+|||+|..+..++..+..+|+++|+|+.+++.+++.+...+ .++.+...|+.+..
T Consensus 97 ~lv~~~~~~~~~---~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~ 173 (271)
T d1nv8a_ 97 ELVELALELIRK---YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF 173 (271)
T ss_dssp HHHHHHHHHHHH---HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG
T ss_pred hhhhhhhhhhcc---ccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccc
Confidence 334444444443 3456999999999999999987776799999999999998876665544 35777888887742
Q ss_pred -CCCCcccEEEecccccc----------------cCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 130 -FMDETFDVILDKGGLDA----------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 130 -~~~~sFDvVi~~g~l~~----------------l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
...++||+|+++...-. +...+++.....++ +.++|+|||.+++-.
T Consensus 174 ~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 174 KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEI 236 (271)
T ss_dssp GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEEC
T ss_pred ccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEEEE
Confidence 23478999998754211 11112222234444 457899999877754
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.53 E-value=8.8e-07 Score=90.80 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=99.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc----C--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEe
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA----G--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILD 140 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~----g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~ 140 (659)
.++.+|||+|||+|.+...+++. + ..+++|+|+++.++..++...........+.+.|..... ...+||+|++
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~vi~ 194 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDVVIS 194 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc-cccccccccc
Confidence 56789999999999999887653 2 236999999999998776665555667788888866543 4578999999
Q ss_pred cccccccCCccc-----------chHHHHHHHHHHHhccccCeEEEEEEcCCchhhc----chhhhh-ccCceEEEeeeC
Q 006149 141 KGGLDALMEPEL-----------GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG----LLFPKF-RFGWKMSVHAIP 204 (659)
Q Consensus 141 ~g~l~~l~~~~~-----------~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~----~l~~~~-~~~w~~~~~~i~ 204 (659)
+..+......+. .......++..+.+.|+|||+++++.... .+.. .+...+ ..++...+..++
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~-~l~~~~~~~lR~~L~~~~~i~~ii~lp 273 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA-MFGTSDFAKVDKFIKKNGHIEGIIKLP 273 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG-GGGSTTHHHHHHHHHHHEEEEEEEECC
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc-cccCchhHHHHHHHHhCCcEEEEEECC
Confidence 877643222110 00113457899999999999998887542 2111 122222 223444455554
Q ss_pred CCCCCCCCCccEEEEEEecCC
Q 006149 205 QKSSSEPSLQTFMVVADKENS 225 (659)
Q Consensus 205 ~~~~~~~~l~~f~~v~~k~~~ 225 (659)
...=........+++.+|.+.
T Consensus 274 ~~~F~~~~~~t~ilvl~K~~~ 294 (328)
T d2f8la1 274 ETLFKSEQARKSILILEKADV 294 (328)
T ss_dssp GGGSCC-CCCEEEEEEEECCT
T ss_pred ccccCCCCCCeEEEEEECCCC
Confidence 321122345557777777554
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.9e-07 Score=90.68 Aligned_cols=102 Identities=15% Similarity=0.059 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-----CCCCcccE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-----FMDETFDV 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-----~~~~sFDv 137 (659)
...+|||+|||+|..+.+++.. + .++|+.+|.++...+.+++.....+ .+++++.+|+.+. + ...++||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 5689999999999999999876 2 3699999999999998887765544 6799999997663 1 23578999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|+..+.-. ....+++.+.++|+|||.+++-..
T Consensus 139 ifiD~dk~----------~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 139 AVVDADKE----------NCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp EEECSCST----------THHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEeCCHH----------HHHHHHHHHHHHhcCCcEEEEeCC
Confidence 99532211 156889999999999999998664
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.36 E-value=4e-07 Score=89.76 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=79.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
...+|||||||+|.++..+++. +..+++..|..+ +++.+ ....+++++.+|+.+. .+ .+|+++...+||.
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~-----~~~~rv~~~~gD~f~~-~p--~aD~~~l~~vLHd 150 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VVENL-----SGSNNLTYVGGDMFTS-IP--NADAVLLKYILHN 150 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTTC-----CCBTTEEEEECCTTTC-CC--CCSEEEEESCGGG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HHHhC-----cccCceEEEecCcccC-CC--CCcEEEEEeeccc
Confidence 3468999999999999999887 345899999854 44321 2347899999999873 33 5799999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccC---eEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSG---GKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpG---G~lvi~~~~ 180 (659)
+.+.+ ..++|+++++.|+|| |++++++..
T Consensus 151 w~d~~-----~~~iL~~~~~al~pgg~~~~lli~e~~ 182 (244)
T d1fp2a2 151 WTDKD-----CLRILKKCKEAVTNDGKRGKVTIIDMV 182 (244)
T ss_dssp SCHHH-----HHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred CChHH-----HHHHHHHHHHHcCcccCCcEEEEEEee
Confidence 87655 679999999999998 788887753
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.34 E-value=8.8e-07 Score=86.73 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=61.8
Q ss_pred CCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEec
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDK 141 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~ 141 (659)
..++++|||||||+|.+|..|++.+. +|++||+++.+++.++++. ...++++++.+|+.+++++......|+++
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~-~~~~n~~i~~~D~l~~~~~~~~~~~vv~N 92 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKL-VDHDNFQVLNKDILQFKFPKNQSYKIFGN 92 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHT-TTCCSEEEECCCGGGCCCCSSCCCEEEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHh-hcccchhhhhhhhhhccccccccceeeee
Confidence 36899999999999999999999875 9999999999999887665 34578999999999988765554455544
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=2.1e-06 Score=84.83 Aligned_cols=124 Identities=11% Similarity=0.063 Sum_probs=83.0
Q ss_pred HHHHHhhCCC--CCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-
Q 006149 55 DPLISLIGAP--TSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM- 128 (659)
Q Consensus 55 ~~l~~~l~~~--~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l- 128 (659)
..+..++... ...+..+|||+|||+|..+..|+.. ...+++|+|+++.+++.+++...... .++.+...+....
T Consensus 46 ~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~ 125 (250)
T d2h00a1 46 HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL 125 (250)
T ss_dssp HHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS
T ss_pred HHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhh
Confidence 3455555431 1234569999999999999999876 33599999999999998877665544 4677777655442
Q ss_pred -----CCCCCcccEEEecccccccCCccc---------------------------c-hHHHHHHHHHHHhccccCeEEE
Q 006149 129 -----QFMDETFDVILDKGGLDALMEPEL---------------------------G-HKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 129 -----~~~~~sFDvVi~~g~l~~l~~~~~---------------------------~-~~~~~~~l~ei~rvLkpGG~lv 175 (659)
...+++||+|+++..++....... + ..-+.+++++....++..|.+.
T Consensus 126 ~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t 205 (250)
T d2h00a1 126 MDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYS 205 (250)
T ss_dssp TTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEE
T ss_pred hhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEE
Confidence 123568999999987764321100 0 0126777888888899888886
Q ss_pred EEE
Q 006149 176 CLT 178 (659)
Q Consensus 176 i~~ 178 (659)
+..
T Consensus 206 ~~i 208 (250)
T d2h00a1 206 CML 208 (250)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.28 E-value=7.8e-07 Score=89.25 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=80.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc-----------CCCCcEEEEeecCCCCCCCCccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-----------DRSDMRWRVMDMTSMQFMDETFD 136 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~-----------~~~~i~~~~~D~~~l~~~~~sFD 136 (659)
.+.+||.+|+|.|..+..+.+.+..+|+.||+++.+++.+++-... ..++++++.+|+...--.+++||
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yD 151 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD 151 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCC
Confidence 5689999999999999998888777999999999999987654321 24789999999876522357899
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+|+.-.+- ....+. .-.-..+++.+++.|+|||++++..
T Consensus 152 vIi~D~~~-~~~~~~--~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 152 VIIADSTD-PVGPAK--VLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEECCC-CC-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCC-CCCCcc--cccCHHHHHhhHhhcCCCceEEEec
Confidence 99964321 111110 0002578999999999999998865
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.26 E-value=1.4e-06 Score=88.81 Aligned_cols=110 Identities=19% Similarity=0.232 Sum_probs=80.7
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc------CCCCcEEEEeecCCC-CCCCCcccEEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------DRSDMRWRVMDMTSM-QFMDETFDVIL 139 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~------~~~~i~~~~~D~~~l-~~~~~sFDvVi 139 (659)
.+.+||.||+|.|..+..+.+. +..+|++||+++.+++.+++.... ..++++++.+|+.+. .-.+++||+|+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 5679999999999999999887 456999999999999988765421 347899999999875 23357899999
Q ss_pred ecccccccCCcccchHH-HHHHHHHHHhccccCeEEEEEE
Q 006149 140 DKGGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~-~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.-.+ +........... -..+++.+++.|+|||++++..
T Consensus 157 ~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 157 IDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 5432 111110000001 2478999999999999998854
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.24 E-value=9.6e-07 Score=85.98 Aligned_cols=102 Identities=15% Similarity=0.014 Sum_probs=80.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C------CCCCccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q------FMDETFD 136 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~------~~~~sFD 136 (659)
...+|||+||++|..+..+++. + .++|+.+|.++...+.+++.....+ .+++++.+|+.+. + ...++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 4679999999999999999975 2 3699999999999998877766554 5699999998764 1 1356899
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+|+.-+.=. ....+++.+.++|+|||.+++-..
T Consensus 139 ~iFiDa~k~----------~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 139 FIFVDADKD----------NYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp EEEECSCST----------THHHHHHHHHHHBCTTCCEEEETT
T ss_pred EEEeccchh----------hhHHHHHHHHhhcCCCcEEEEccC
Confidence 999532111 156899999999999999998754
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.21 E-value=8.8e-06 Score=76.15 Aligned_cols=140 Identities=17% Similarity=0.187 Sum_probs=96.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (659)
+++.+|||+||++|.++..+.+. ....|+++|+.+ + ...+++.++++|+.+.. .....||
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-----~-----~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-----M-----DPIVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-----C-----CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc-----c-----cccCCceEeecccccchhhhhhhhhccCccee
Confidence 47889999999999999988875 346899999876 2 24578899999998742 3457899
Q ss_pred EEEecccccccCCcccch----HHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeCCCCCCCCC
Q 006149 137 VILDKGGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPS 212 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~----~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~ 212 (659)
+|++-++.+.......+. .+....+.-+.++|++||.|++=.+.... ...+.......|.. +..+-..+.+...
T Consensus 91 lVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~-~~~l~~~l~~~F~~-V~~~KP~aSR~~S 168 (180)
T d1ej0a_ 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG-FDEYLREIRSLFTK-VKVRKPDSSRARS 168 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT-HHHHHHHHHHHEEE-EEEECCTTSCTTC
T ss_pred EEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc-HHHHHHHHHhhcCE-EEEECCCCcccCC
Confidence 999988877654433222 23778888899999999999998886443 33444444443322 2222223333444
Q ss_pred CccEEE
Q 006149 213 LQTFMV 218 (659)
Q Consensus 213 l~~f~~ 218 (659)
-+.|++
T Consensus 169 sE~Ylv 174 (180)
T d1ej0a_ 169 REVYIV 174 (180)
T ss_dssp CEEEEE
T ss_pred ceEEEE
Confidence 555654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.20 E-value=2.9e-06 Score=79.68 Aligned_cols=105 Identities=14% Similarity=0.080 Sum_probs=76.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCC---CCCCCcccEEEec
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSM---QFMDETFDVILDK 141 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~~~D~~~l---~~~~~sFDvVi~~ 141 (659)
.+.+|||+.||+|.++.+.+.+|...|+.||.+..++..+++....-+ ....+.+.|..+. .....+||+|+.-
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 467999999999999999999999999999999999987765543322 2356666665432 3345679999965
Q ss_pred ccccccCCcccchHHHHHHHHHHHh--ccccCeEEEEEEcC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTLA 180 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~r--vLkpGG~lvi~~~~ 180 (659)
..... ......+..+.. +|+++|.+++-...
T Consensus 123 PPY~~--------~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 123 PPFHF--------NLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp CCSSS--------CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred hhHhh--------hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 44332 125577777754 79999988886543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.18 E-value=1.4e-06 Score=85.67 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=78.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
...+|||||||+|.++..+++. +..++++.|..+. ++ .....+++.+..+|+.+ +.|. .|+++....++.
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~-----~~~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~ 151 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE-----DAPSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHD 151 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT-----TCCCCTTEEEEECCTTT-CCCC--CSCEECSSSSTT
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh-----hcccCCceEEecccccc-cCCC--cceEEEEEEeec
Confidence 3578999999999999999987 3358999999763 22 12344789999999976 4443 577888888888
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
..+.+ ...+|+++++.|+|||++++.+..
T Consensus 152 ~~d~~-----~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 152 WSDEH-----CLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp SCHHH-----HHHHHHHHHHHCCSSSCEEEEECE
T ss_pred CCHHH-----HHHHHHHHHHhcCCCceEEEEEEE
Confidence 76544 678999999999999999998753
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.11 E-value=3.2e-07 Score=90.50 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=70.3
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (659)
.+...+.+.+.. .++++|||||||+|.+|..|++.+. +|++||+++.+++.++++. ...++++++++|+.+++++
T Consensus 16 ~ii~kIv~~~~~---~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~-~~~~n~~ii~~D~l~~~~~ 90 (245)
T d1yuba_ 16 KVLNQIIKQLNL---KETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKL-KLNTRVTLIHQDILQFQFP 90 (245)
T ss_dssp TTHHHHHHHCCC---CSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTT-TTCSEEEECCSCCTTTTCC
T ss_pred HHHHHHHHhcCC---CCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhh-hhccchhhhhhhhhccccc
Confidence 344456666654 5788999999999999999999876 9999999998777554443 2346899999999999988
Q ss_pred CCcccEEEecccccccC
Q 006149 132 DETFDVILDKGGLDALM 148 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~ 148 (659)
...++.|+++-. +++.
T Consensus 91 ~~~~~~vv~NLP-Y~Is 106 (245)
T d1yuba_ 91 NKQRYKIVGNIP-YHLS 106 (245)
T ss_dssp CSSEEEEEEECC-SSSC
T ss_pred cceeeeEeeeee-hhhh
Confidence 777777776655 3443
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.11 E-value=6.7e-06 Score=77.07 Aligned_cols=121 Identities=15% Similarity=0.241 Sum_probs=90.4
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC---
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--- 129 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--- 129 (659)
+...+.+++.. .++..++|..||.|..+..+.+.+ ++|+|+|..+.++..+.++ ...++.+++.+..++.
T Consensus 6 ll~Evl~~l~~---~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~---~~~~~~~~~~~f~~~~~~l 78 (182)
T d1wg8a2 6 LYQEALDLLAV---RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGL---HLPGLTVVQGNFRHLKRHL 78 (182)
T ss_dssp THHHHHHHHTC---CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHT---CCTTEEEEESCGGGHHHHH
T ss_pred HHHHHHHhcCC---CCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhc---cccceeEeehHHHHHHHHH
Confidence 34445666654 689999999999999999998875 4999999999999877543 3468999999888763
Q ss_pred --CCCCcccEEEecccccc--cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 130 --FMDETFDVILDKGGLDA--LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 130 --~~~~sFDvVi~~g~l~~--l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+..+.+|.|+.--.+.. +.++..+.......|.....+|++||+++++++.
T Consensus 79 ~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 79 AALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred HHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 34568998885332221 2222223333667899999999999999999985
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.09 E-value=4.4e-06 Score=84.19 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=80.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDvVi~ 140 (659)
.+.+||.||.|.|..+..+.+. +..+|++||+++.+++.+++.... ..++++++.+|+... .-.+++||+|+.
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 4679999999999999999887 457899999999999987664322 347899999998875 234578999996
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
-.+-....... .-.-..+++.+++.|+|||++++...+
T Consensus 169 D~~dp~~~~~~--~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 169 DSTDPTAGQGG--HLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EC------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCCCcCchh--hhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 43221100000 000258999999999999999987644
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.08 E-value=4.3e-06 Score=79.87 Aligned_cols=118 Identities=23% Similarity=0.290 Sum_probs=82.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (659)
..+...+.+++.. .++.+|||+|||+|.++..+.+. ....++|+|+++.++. .......+++|....
T Consensus 5 ~~i~~~m~~l~~~---~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~--------~~~~~~~~~~~~~~~ 73 (223)
T d2ih2a1 5 PEVVDFMVSLAEA---PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD--------LPPWAEGILADFLLW 73 (223)
T ss_dssp HHHHHHHHHHCCC---CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC--------CCTTEEEEESCGGGC
T ss_pred HHHHHHHHHhcCC---CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh--------hcccceeeeeehhcc
Confidence 4566677777765 57889999999999998877664 2357999999984432 123457788888776
Q ss_pred CCCCCcccEEEecccccccCCcccc----------------------hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 129 QFMDETFDVILDKGGLDALMEPELG----------------------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~~----------------------~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
. ....||+|+++..+......... ......++....+.|++||+++++...
T Consensus 74 ~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 74 E-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp C-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred c-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 5 34789999988765432211100 001346678899999999999888754
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.07 E-value=7.3e-06 Score=81.81 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=81.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhh-----cCCCCcEEEEeecCCC-CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSM-QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~-----~~~~~i~~~~~D~~~l-~~~~~sFDvVi~ 140 (659)
.+.+||.+|-|.|..+..+.+. +..+|+.||+++.+++.+++-.. ...++++++.+|.... .-.+++||+|+.
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~ 154 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence 5679999999999999999987 55799999999999998866542 2347899999998774 234578999996
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
-.+-.. ..+.. ---..+++.+++.|+|||+++....
T Consensus 155 D~~~p~-~~~~~--L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 155 DSTEPV-GPAVN--LFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp SCSSCC-SCCCC--CSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCC-Ccchh--hccHHHHHHHHhhcCCCceEEEecC
Confidence 532211 11000 0024889999999999999998753
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.07 E-value=7.9e-06 Score=82.23 Aligned_cols=110 Identities=15% Similarity=0.264 Sum_probs=82.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhh-----cCCCCcEEEEeecCCC--CCCCCcccEEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSM--QFMDETFDVIL 139 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~-----~~~~~i~~~~~D~~~l--~~~~~sFDvVi 139 (659)
.+.+||-+|-|.|..+..+.+. +..+|+.||+++.+++.+++-.. ...++++++.+|.... ...+++||+|+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 4679999999999999999887 55689999999999998866432 2358899999998765 23456899999
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.-.+ +....+. .---..+++.+++.|+|||++++...+
T Consensus 160 ~D~~-dp~~~~~--~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 160 VDSS-DPIGPAK--ELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp ECCC-CTTSGGG--GGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCC-CCCCcch--hhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 5322 1111000 001357899999999999999997644
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.99 E-value=8.2e-06 Score=82.64 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=79.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDvVi~ 140 (659)
.+.+||.+|-|.|..+..+.+. +..+|+.||+++.+++.+++-... ..++++++.+|.... .-..++||+|+.
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~ 185 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 185 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence 5679999999999999999987 446999999999999988665432 237899999998875 224578999996
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
-.+-. ...+. .-.-..+++.+++.|+|||+++.-.-
T Consensus 186 D~~dp-~~~~~--~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 186 DSSDP-VGPAE--SLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp CCC----------------HHHHHHHHEEEEEEEEEECC
T ss_pred cCCCC-CCcch--hhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 43211 11110 01145889999999999999998753
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=1.1e-05 Score=81.02 Aligned_cols=111 Identities=19% Similarity=0.296 Sum_probs=81.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhh-----cCCCCcEEEEeecCCC-CCCCCcccEEE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSM-QFMDETFDVIL 139 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~-----~~~~~i~~~~~D~~~l-~~~~~sFDvVi 139 (659)
..+.+||.+|-|.|..+..+.+. +..+|+.||+++.+++.+++... ...++++++.+|+... .-..++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 35679999999999999999987 56799999999999998876542 2348999999998775 22457899999
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.-.+ +....+. .-.-..+++.+++.|+|||.+++...+
T Consensus 157 ~D~~-~p~~~~~--~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 157 TDSS-DPMGPAE--SLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EECC--------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EcCC-CCCCccc--ccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 6432 1111100 001347899999999999999987644
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=3.4e-05 Score=79.52 Aligned_cols=132 Identities=10% Similarity=0.176 Sum_probs=87.0
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC---
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM--- 128 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l--- 128 (659)
+...+.+++.. .++.+|||+-||.|.++..|++.+ .+|+|+|.++.+++.+++.+..++ .++.|+++|..+.
T Consensus 200 l~~~v~~~~~~---~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~ 275 (358)
T d1uwva2 200 MVARALEWLDV---QPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 275 (358)
T ss_dssp HHHHHHHHHTC---CTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS
T ss_pred HHHHHHHhhcc---CCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhh
Confidence 33345556654 567899999999999999998875 499999999999998877655544 6899999998764
Q ss_pred -CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEE
Q 006149 129 -QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 200 (659)
Q Consensus 129 -~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~ 200 (659)
......||+|+.. +|..| ..+.+..+.+. +|.- ++.++.....+.+.+-.....+|.+.-
T Consensus 276 ~~~~~~~~d~vilD-------PPR~G---~~~~~~~l~~~-~~~~-ivYVSCnp~TlaRDl~~l~~~gy~l~~ 336 (358)
T d1uwva2 276 QPWAKNGFDKVLLD-------PARAG---AAGVMQQIIKL-EPIR-IVYVSCNPATLARDSEALLKAGYTIAR 336 (358)
T ss_dssp SGGGTTCCSEEEEC-------CCTTC---CHHHHHHHHHH-CCSE-EEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhhhhccCceEEeC-------CCCcc---HHHHHHHHHHc-CCCE-EEEEeCCHHHHHHHHHHHHHCCCeEeE
Confidence 2234679999842 22222 23455655553 5554 444444433444444333345676653
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=2.7e-05 Score=74.26 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=87.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|+|+|||.|.=+..++-. +..+++.+|.+..-+..+++....-+ .++++++..+.++. ...+||+|++..+..
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~~~ 143 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFAS 143 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSSS
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhhcC
Confidence 3569999999999999888865 44699999999988777765554444 68999999999875 346899999765433
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMS 199 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~ 199 (659)
...++.-+.+.+++||++++.--. ...+++ .....+|.+.
T Consensus 144 -----------~~~ll~~~~~~l~~~g~~~~~KG~--~~~eEl-~~~~~~~~~~ 183 (207)
T d1jsxa_ 144 -----------LNDMVSWCHHLPGEQGRFYALKGQ--MPEDEI-ALLPEEYQVE 183 (207)
T ss_dssp -----------HHHHHHHHTTSEEEEEEEEEEESS--CCHHHH-HTSCTTEEEE
T ss_pred -----------HHHHHHHHHHhcCCCcEEEEECCC--CHHHHH-HhhhcCCEEE
Confidence 348899999999999999988742 222222 2334577654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.78 E-value=5.4e-05 Score=73.64 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=77.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc-CCCCcEEEEeecCCCCC---CCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQF---MDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~-~~~~i~~~~~D~~~l~~---~~~sFDvVi~~g 142 (659)
...+|+|+|+|.|.=+..|+-. +..+++.+|-+..=+..++.-... .-.++.+++..++++.. ..++||+|++..
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 4679999999999999888764 556999999999776665443333 23688888888776532 136899999874
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.. ...++.-+..++++||++++.--.
T Consensus 150 va~-----------l~~ll~~~~~~l~~~g~~i~~KG~ 176 (239)
T d1xdza_ 150 VAR-----------LSVLSELCLPLVKKNGLFVALKAA 176 (239)
T ss_dssp CSC-----------HHHHHHHHGGGEEEEEEEEEEECC
T ss_pred hhC-----------HHHHHHHHhhhcccCCEEEEECCC
Confidence 433 348999999999999999888743
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.78 E-value=0.00023 Score=75.02 Aligned_cols=180 Identities=13% Similarity=0.105 Sum_probs=113.2
Q ss_pred CccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc----C----------CCeEEEEcCCHHHHHHH
Q 006149 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G----------FHGITNVDFSKVVISDM 107 (659)
Q Consensus 42 ~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~----g----------~~~VtgvD~S~~~i~~~ 107 (659)
+...-|.....+...+.+++.. .++.+|+|.+||+|.+...+++. + ...+.|+|+++.+...+
T Consensus 139 k~~G~f~TP~~Iv~~mv~ll~~---~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la 215 (425)
T d2okca1 139 SGAGQYFTPRPLIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA 215 (425)
T ss_dssp TCCGGGCCCHHHHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred ccchhhccchhhhHhhheeccC---cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHH
Confidence 3344455667888888888875 57889999999999999777663 1 12599999999888755
Q ss_pred HHHhhcCC---CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccc----------hHHHHHHHHHHHhccccCeEE
Q 006149 108 LRRNVRDR---SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELG----------HKLGNQYLSEVKRLLKSGGKF 174 (659)
Q Consensus 108 ~~~~~~~~---~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~----------~~~~~~~l~ei~rvLkpGG~l 174 (659)
+-...-.+ ......+.|....+ +...||+|+++..+......... ...--.++..+.+.|++||++
T Consensus 216 ~~n~~l~g~~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~ 294 (425)
T d2okca1 216 SMNLYLHGIGTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA 294 (425)
T ss_dssp HHHHHHTTCCSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred HhhhhhcCCccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeE
Confidence 44332222 34567788877643 45789999998777432211100 011346899999999999999
Q ss_pred EEEEcCCchhh----cchhhhh-ccCceEEEeeeCCCCCCCCCCccEEEEEEecCC
Q 006149 175 VCLTLAESHVL----GLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (659)
Q Consensus 175 vi~~~~~~~~~----~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (659)
+++.....-+. ..+-+.+ ..++-..+..++..-=.....+..+++.+|.+.
T Consensus 295 ~iI~p~~~L~~~~~~~~iR~~Ll~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~k~ 350 (425)
T d2okca1 295 AVVLPDNVLFEAGAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP 350 (425)
T ss_dssp EEEEEHHHHHCSTHHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEESSC
T ss_pred EEEechHHhhhhhhHHHHHHHHHHhcchhHhhcCCcccccCCCCCeEEEEEECCCC
Confidence 88875311111 1122222 223444566665321123456668888888654
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=2e-05 Score=76.14 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=60.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC------------------CCCeeE--E----
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ------------------DKSLKV--F---- 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~------------------d~rl~v--f---- 596 (659)
...+||-||.|.|.++.++.++.|. ++++||+||.++++|++++.-.. +...|. |
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCeEEEeeccchHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence 4579999999999999999987664 89999999999999999984321 111121 1
Q ss_pred -----ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 -----NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 -----~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.|+ ....|++.++++| +|+|+++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~L---kpGG~~~~ 161 (229)
T d1zx0a1 132 LSEETWHTHQFNFIKNHAFRLL---KPGGVLTY 161 (229)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHE---EEEEEEEE
T ss_pred cccccccccCHHHHHHHHHHHc---CCCcEEEE
Confidence 111 2345788899999 99999976
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.70 E-value=9.5e-05 Score=74.94 Aligned_cols=114 Identities=17% Similarity=0.070 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEe---
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILD--- 140 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~--- 140 (659)
.++.+|||++||.|.=+..++.. +.+.++++|.++.-+..+.++..+.+ .++.....|...++..+..||.|+.
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 194 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEccc
Confidence 68899999999999999888875 33579999999999988776654433 6677777888777666788999994
Q ss_pred ---cccccccCCc------ccc---hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 141 ---KGGLDALMEP------ELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 141 ---~g~l~~l~~~------~~~---~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.|++..-++. ++- ...-.++|.+..+.|||||+++-+|.+
T Consensus 195 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 2333221110 000 022678899999999999999999876
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00021 Score=71.05 Aligned_cols=86 Identities=14% Similarity=0.237 Sum_probs=66.9
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (659)
+...+.+.+.. .+++.|||||||+|.+|..|++.+. +|++|++++.+++.+.++..... .+++++.+|+...++
T Consensus 9 i~~kIv~~~~~---~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 9 IINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp HHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHhCC---CCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence 34445555543 5788999999999999999999975 99999999999998877765432 579999999998875
Q ss_pred CCCcccEEEecccc
Q 006149 131 MDETFDVILDKGGL 144 (659)
Q Consensus 131 ~~~sFDvVi~~g~l 144 (659)
+ .++.|+++-..
T Consensus 85 ~--~~~~vV~NLPY 96 (278)
T d1zq9a1 85 P--FFDTCVANLPY 96 (278)
T ss_dssp C--CCSEEEEECCG
T ss_pred h--hhhhhhcchHH
Confidence 4 35667765443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=3.5e-05 Score=75.78 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=59.1
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (659)
.+...+.+.+.. .+++.|||||||+|.+|..|++.+. +|++||+++.+++.++++. ...++++++.+|+.++++
T Consensus 8 ~~~~~Iv~~~~~---~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~-~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 8 FVIDSIVSAINP---QKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHP-FLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHHCC---CTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCT-TTGGGEEEECSCGGGCCH
T ss_pred HHHHHHHHhcCC---CCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHh-hhccchhHHhhhhhhhcc
Confidence 344456666654 5789999999999999999998875 8999999999988775533 234689999999998754
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.56 E-value=5.6e-05 Score=73.35 Aligned_cols=122 Identities=15% Similarity=0.183 Sum_probs=76.4
Q ss_pred Cccccccch----hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc----C-CCeEEEEcCCHHHHHHHHHHhh
Q 006149 42 DSFEWYAEW----PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVISDMLRRNV 112 (659)
Q Consensus 42 ~~fewy~~~----~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~----g-~~~VtgvD~S~~~i~~~~~~~~ 112 (659)
..|.|.+.. +.-...+.+++.. .++.+|||+|++.|..+..++.. + .++|+++|+.+.... ...
T Consensus 53 ~~~~w~G~p~~k~p~d~~~~~eli~~---~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~----~~~ 125 (232)
T d2bm8a1 53 SPYQWRGLRMLKDPDTQAVYHDMLWE---LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ----IPA 125 (232)
T ss_dssp SCCEETTEECCSCHHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC----CCG
T ss_pred cCccccceecccCHHHHHHHHHHHHH---hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh----hhh
Confidence 346676652 3333445556554 34679999999999887766542 2 368999999863322 112
Q ss_pred cCCCCcEEEEeecCCCC----CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 113 RDRSDMRWRVMDMTSMQ----FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 113 ~~~~~i~~~~~D~~~l~----~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
....+++++.+|..+.. +....+|+|+.-+. |. ... ...-+ ++..+|++||++++-+.
T Consensus 126 ~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H~-~~~------v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 126 SDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA-HA-NTF------NIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-CS-SHH------HHHHH-HHHHTCCTTCEEEECSC
T ss_pred ccccceeeeecccccHHHHHHHHhcCCCEEEEcCC-cc-hHH------HHHHH-HHhcccCcCCEEEEEcC
Confidence 23478999999987653 33456787775443 22 111 11223 35689999999999775
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.00023 Score=70.98 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=80.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCcccEEEe---
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILD--- 140 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDvVi~--- 140 (659)
.++.+|||+++|.|.=+..+++.+. +.|+++|.++.-+..+.+.....+.+......+.... ....+.||.|+.
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEecc
Confidence 6889999999999999999988743 6899999999999888887766665444444333322 133568999993
Q ss_pred ---cccccccCCc------ccc---hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 141 ---KGGLDALMEP------ELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 141 ---~g~l~~l~~~------~~~---~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.|++..-++. .+- ...-.++|.++.+.|||||+++-+|.+
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 2333221110 000 012678899999999999999999876
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.0006 Score=68.17 Aligned_cols=113 Identities=17% Similarity=0.119 Sum_probs=77.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCC---CCcccEEEe
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFM---DETFDVILD 140 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~---~~sFDvVi~ 140 (659)
.++.+|||++||.|.-+..+++. +...|+++|+++.-++.+++.....+ .++.+...|...+... .+.||.|+.
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence 67899999999999999888875 34589999999999988877765554 6788999998876422 257999994
Q ss_pred c------ccccccCC------cccc--h---HHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 141 K------GGLDALME------PELG--H---KLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 141 ~------g~l~~l~~------~~~~--~---~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
- |++..-++ .... . ..-.+++..+. .|+|||+++-+|.+
T Consensus 173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCS 228 (293)
T d2b9ea1 173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCS 228 (293)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESC
T ss_pred cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeecc
Confidence 2 33222111 0100 0 11344666666 47999999988876
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=0.00045 Score=68.04 Aligned_cols=83 Identities=13% Similarity=0.252 Sum_probs=67.4
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC-----------C-CCCCeeEEecccchhHHHH
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-----------T-QDKSLKVFNHLFCLQLEED 607 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl-----------~-~d~rl~vf~~l~~~~f~~~ 607 (659)
..+.+||=||-|.|.+...|.+.+|+.++++||+++.+++.|++...- + ++..+|+.-.++.....++
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~e 162 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCKAEE 162 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCCHHH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHHHHH
Confidence 566899999999999999999999999999999999999999986521 1 1333455555666777889
Q ss_pred HHHhhccCCCCcEEEecC
Q 006149 608 VNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 608 ~~~~Lf~~~~~g~~~~n~ 625 (659)
+.++| +|+|.++...
T Consensus 163 ~~rvL---kpgG~l~~~~ 177 (268)
T d1p91a_ 163 LARVV---KPGGWVITAT 177 (268)
T ss_dssp HHHHE---EEEEEEEEEE
T ss_pred HHHHh---CCCcEEEEEe
Confidence 99999 9999887754
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.00083 Score=72.57 Aligned_cols=176 Identities=9% Similarity=0.038 Sum_probs=105.5
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc----C---------------CCeEEEEcCCHHHHHHH
Q 006149 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G---------------FHGITNVDFSKVVISDM 107 (659)
Q Consensus 47 y~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~----g---------------~~~VtgvD~S~~~i~~~ 107 (659)
|.....+...+.+++.. .++.+|+|.+||+|.+....++. . ...++|+|+++.+...+
T Consensus 146 fyTP~~Iv~~mv~ll~~---~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la 222 (524)
T d2ar0a1 146 YFTPRPLIKTIIHLLKP---QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 222 (524)
T ss_dssp CCCCHHHHHHHHHHHCC---CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred hccccchhHhhhhcccC---ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence 44556778888888875 67789999999999998766553 1 12589999999888755
Q ss_pred HHHhhcCCC------CcEEEEeecCCCC-CCCCcccEEEecccccccCCcccc-------hHHHHHHHHHHHhccccCeE
Q 006149 108 LRRNVRDRS------DMRWRVMDMTSMQ-FMDETFDVILDKGGLDALMEPELG-------HKLGNQYLSEVKRLLKSGGK 173 (659)
Q Consensus 108 ~~~~~~~~~------~i~~~~~D~~~l~-~~~~sFDvVi~~g~l~~l~~~~~~-------~~~~~~~l~ei~rvLkpGG~ 173 (659)
+-...-.+. .-.+...+....+ ....+||+|+++..+..-...... ...--.++..+.+.|++||+
T Consensus 223 ~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr 302 (524)
T d2ar0a1 223 LMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGR 302 (524)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred HHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCc
Confidence 433322221 1233344433321 234689999998766422111100 01123589999999999999
Q ss_pred EEEEEcCC----chhhcchhhhh-ccCceEEEeeeCCCCCCCCCCccEEEEEEecCC
Q 006149 174 FVCLTLAE----SHVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (659)
Q Consensus 174 lvi~~~~~----~~~~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (659)
+.++.... ......+-+.+ ..++...+..++..-=.....+..+++.+|.+.
T Consensus 303 ~aiIlP~~~Lf~~~~~~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~k~ 359 (524)
T d2ar0a1 303 AAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 359 (524)
T ss_dssp EEEEEEHHHHHCCTHHHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBCS
T ss_pred EEEEEehHHhhhhhhhHHHHHHHHHcCCceEEEECCCCcCCCCCCCeEEEEEECCCC
Confidence 98887531 11111122222 234555566665321122456678888888665
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.10 E-value=0.0013 Score=63.48 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=66.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhc-CCCC-cEEEEe-ecCCCCCCCCcccEEEecc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-DRSD-MRWRVM-DMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~-~~~~-i~~~~~-D~~~l~~~~~sFDvVi~~g 142 (659)
.+..+|+|+|||.|.++..++... ...|.|+|+--.. .+.-.... ...+ +++... |+.. .+++..|+|+|-.
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~--~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm 140 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG--HEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDI 140 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT--SCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCSEEEECC
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc--ccCCccccccccccccchhhhhHHh--cCCCcCCEEEeeC
Confidence 577899999999999999998773 2467777773210 00000000 0112 233322 2222 3467899999865
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+-. .++..-+....-++++-+.++|+|||-|+|=.++
T Consensus 141 ~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 141 GES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 432 2332222223446788888999999999988776
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.05 E-value=0.00084 Score=69.37 Aligned_cols=100 Identities=15% Similarity=0.050 Sum_probs=73.1
Q ss_pred CCCeEEEECCCcchHHHHHHH-cCCCeEEEEcCCHHHHHHHHHHhhcCC----------------CCcEEEEeecCCCCC
Q 006149 68 PPPQILVPGCGNSRLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDR----------------SDMRWRVMDMTSMQF 130 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~-~g~~~VtgvD~S~~~i~~~~~~~~~~~----------------~~i~~~~~D~~~l~~ 130 (659)
.+.+|||..||+|..+...+. .|...|+++|+|+.+++.+++....++ ..+.+.++|+...-.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 357999999999999986655 466789999999999998876543332 135566667654322
Q ss_pred -CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 131 -MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 131 -~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
....||+|.. |-+..+. .++..+.+.++.||.+.+..
T Consensus 125 ~~~~~fDvIDi----DPfGs~~-------pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDL----DPFGSPM-------EFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEE----CCSSCCH-------HHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccC----CCCCCcH-------HHHHHHHHHhccCCEEEEEe
Confidence 3457998873 4445444 78999999999998887764
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=97.02 E-value=0.001 Score=63.29 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=60.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhC--CCccEEEEecChhHHHHHHhhcCC-CCCCCe---------------eEE------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYFGF-TQDKSL---------------KVF------ 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~--p~~~i~~VEiDp~V~~vA~~~Fgl-~~d~rl---------------~vf------ 596 (659)
...+||=||-|.|.+...|.++. |+.++++||+++.+++.|++...- ....+. ++.
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l 118 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 118 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence 34689999999999999988764 789999999999999999986421 111111 221
Q ss_pred ecc---cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHL---FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l---~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++ ....+++.++++| +|+|.+..
T Consensus 119 ~~~~~~d~~~~l~~i~~~L---kpgG~li~ 145 (225)
T d1im8a_ 119 QFLPPEDRIALLTKIYEGL---NPNGVLVL 145 (225)
T ss_dssp GGSCGGGHHHHHHHHHHHE---EEEEEEEE
T ss_pred cccChhhHHHHHHHHHHhC---CCCceeec
Confidence 233 2347899999999 99997765
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=96.94 E-value=0.00065 Score=64.46 Aligned_cols=78 Identities=14% Similarity=0.236 Sum_probs=59.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC--------------CCCCeeEE------e
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT--------------QDKSLKVF------N 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~d~rl~vf------~ 597 (659)
...+||=||.|.|.+...+.+.. .++++||+++.+++.|++.+ +++ ++...|+. .
T Consensus 15 ~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~ 92 (231)
T d1vl5a_ 15 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH 92 (231)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred CcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccccc
Confidence 44799999999999999999886 47999999999999998764 222 12223332 3
Q ss_pred cc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
|+ .-..++..++++| +|+|.++.
T Consensus 93 ~~~d~~~~l~~~~r~L---kpgG~l~i 116 (231)
T d1vl5a_ 93 HFPNPASFVSEAYRVL---KKGGQLLL 116 (231)
T ss_dssp GCSCHHHHHHHHHHHE---EEEEEEEE
T ss_pred ccCCHHHHHHHHHHhc---CCCcEEEE
Confidence 45 3557899999999 99997765
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=96.90 E-value=0.00089 Score=66.01 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=61.8
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC---------------CCCCeeEE-----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT---------------QDKSLKVF----- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~---------------~d~rl~vf----- 596 (659)
+...+||=||.|.|.++.+|.+.+ +.+|++||++|.+++.|++.. |+. ++...|+.
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 144 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 144 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccch
Confidence 455799999999999999998775 468999999999999999864 332 12223433
Q ss_pred -eccc-chhHHHHHHHhhccCCCCcEEEec
Q 006149 597 -NHLF-CLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 597 -~~l~-~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
.|+- -..++..++++| +|+|.++..
T Consensus 145 l~h~~d~~~~l~~~~~~L---kpgG~l~~~ 171 (282)
T d2o57a1 145 FLHSPDKLKVFQECARVL---KPRGVMAIT 171 (282)
T ss_dssp GGGCSCHHHHHHHHHHHE---EEEEEEEEE
T ss_pred hhhccCHHHHHHHHHHhc---CCCcEEEEE
Confidence 4443 457888999999 999977663
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=96.82 E-value=0.00069 Score=66.24 Aligned_cols=80 Identities=15% Similarity=0.078 Sum_probs=60.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-CCCCe---------------eEE--e----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSL---------------KVF--N---- 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-~d~rl---------------~vf--~---- 597 (659)
....+||=||+|.|.+...|.+.+|+++++++|+ |.+++.|++.+.-. ..+|+ |++ .
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh 158 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLL 158 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGG
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcccccc
Confidence 4557899999999999999999999999999999 88999998876211 12233 433 1
Q ss_pred ccc---chhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HLF---CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l~---~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
++- ...+.+.++++| +|+|.+.+
T Consensus 159 ~~~d~~~~~lL~~i~~~L---kpgG~llI 184 (256)
T d1qzza2 159 NWSDEDALTILRGCVRAL---EPGGRLLV 184 (256)
T ss_dssp GSCHHHHHHHHHHHHHHE---EEEEEEEE
T ss_pred ccCcHHHHHHHHHHHhhc---CCcceeEE
Confidence 221 246788899999 99995544
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.0021 Score=61.71 Aligned_cols=79 Identities=11% Similarity=0.047 Sum_probs=61.9
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC--------------CCCeeEE------ec
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ--------------DKSLKVF------NH 598 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~--------------d~rl~vf------~~ 598 (659)
..+||=||.|-|.+..++.+.++ ++|++||++|.+++.|++.. |+.+ +...|+. .|
T Consensus 34 g~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~ 112 (245)
T d1nkva_ 34 GTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWI 112 (245)
T ss_dssp TCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESCGGG
T ss_pred CCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEEEEEehhhc
Confidence 47999999999999999988876 69999999999999999864 4321 2223332 34
Q ss_pred c-cchhHHHHHHHhhccCCCCcEEEec
Q 006149 599 L-FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 599 l-~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
+ .-..+++.++++| +|+|.++..
T Consensus 113 ~~d~~~~l~~~~r~L---kPGG~l~i~ 136 (245)
T d1nkva_ 113 AGGFAGAEELLAQSL---KPGGIMLIG 136 (245)
T ss_dssp TSSSHHHHHHHTTSE---EEEEEEEEE
T ss_pred cCCHHHHHHHHHHHc---CcCcEEEEE
Confidence 4 3578999999999 999988774
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=96.77 E-value=0.0014 Score=62.35 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=62.6
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC----------C-CCCCeeE-E------ecc-c
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----------T-QDKSLKV-F------NHL-F 600 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl----------~-~d~rl~v-f------~~l-~ 600 (659)
+.+.+||=||.|.|.++..|... +.+|++||+++.+++.|++.+.- + +++..|+ + +|+ .
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhh
Confidence 45679999999999999999876 46899999999999999997521 1 2334453 3 233 3
Q ss_pred chhHHHHHHHhhccCCCCcEEEecC
Q 006149 601 CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 601 ~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
...+.+.++++| +|+|+++...
T Consensus 119 ~~~~l~~i~r~L---k~gG~~ii~~ 140 (246)
T d2avna1 119 KDKAFSEIRRVL---VPDGLLIATV 140 (246)
T ss_dssp HHHHHHHHHHHE---EEEEEEEEEE
T ss_pred HHHHHHHHHhhc---CcCcEEEEEE
Confidence 456788999999 9999987754
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.0011 Score=63.02 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=59.9
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-----------------CCCCeeEE------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----------------QDKSLKVF------ 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-----------------~d~rl~vf------ 596 (659)
....+||-||.|.|.+...+....+. +|++||+++.+++.|++.+... ++...|+.
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 44578999999999999988766664 8999999999999999876321 12223332
Q ss_pred ecccc---hhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHLFC---LQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l~~---~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.|+-. .++...++++| +|+|.+..
T Consensus 138 ~h~~~~~~~~~l~~i~~~L---k~~G~~~i 164 (222)
T d2ex4a1 138 GHLTDQHLAEFLRRCKGSL---RPNGIIVI 164 (222)
T ss_dssp GGSCHHHHHHHHHHHHHHE---EEEEEEEE
T ss_pred ccchhhhhhhHHHHHHHhc---CCcceEEE
Confidence 44433 36888999999 99997764
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.0016 Score=62.07 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=63.8
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCee---------------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLK--------------------- 594 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~--------------------- 594 (659)
-+|++||-||-|.|--+.++....| +.+|+.||+||...++|+++| |+. ++++
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~--~~i~~~~Gda~e~l~~~~~~~~~~~ 135 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE--HKIDLRLKPALETLDELLAAGEAGT 135 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc--ceEEEEEeehhhcchhhhhhcccCC
Confidence 4679999999999999999988876 689999999999999999998 443 3342
Q ss_pred ---EE---ecccchhHHHHHHHhhccCCCCcEEEe-cC
Q 006149 595 ---VF---NHLFCLQLEEDVNLVLFGLSSESCIKD-NS 625 (659)
Q Consensus 595 ---vf---~~l~~~~f~~~~~~~Lf~~~~~g~~~~-n~ 625 (659)
+| ++=....+++.+.+.| +++|++++ |.
T Consensus 136 fD~ifiD~dk~~y~~~~~~~~~lL---~~GGvii~Dn~ 170 (219)
T d2avda1 136 FDVAVVDADKENCSAYYERCLQLL---RPGGILAVLRV 170 (219)
T ss_dssp EEEEEECSCSTTHHHHHHHHHHHE---EEEEEEEEECC
T ss_pred ccEEEEeCCHHHHHHHHHHHHHHh---cCCcEEEEeCC
Confidence 22 1122456678888999 99998876 55
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=96.76 E-value=0.0014 Score=62.44 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=59.9
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC--------------CCCCeeEE------e
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT--------------QDKSLKVF------N 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~d~rl~vf------~ 597 (659)
...|||=||.|.|.+...|.+.. .++++||+.+.+++.|++.. +++ +|...|+. .
T Consensus 16 ~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 93 (234)
T d1xxla_ 16 AEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAH 93 (234)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred CCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeeceee
Confidence 44689999999999999999886 47999999999999999885 222 12223433 3
Q ss_pred cc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
|+ .-..++..++++| +|+|.+..
T Consensus 94 ~~~d~~~~l~~~~r~L---kpgG~~~~ 117 (234)
T d1xxla_ 94 HFSDVRKAVREVARVL---KQDGRFLL 117 (234)
T ss_dssp GCSCHHHHHHHHHHHE---EEEEEEEE
T ss_pred cccCHHHHHHHHHHee---CCCcEEEE
Confidence 33 2467889999999 99997655
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.72 E-value=0.0025 Score=61.01 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=59.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC---CC------------CCCCeeEE-------e
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---FT------------QDKSLKVF-------N 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg---l~------------~d~rl~vf-------~ 597 (659)
.++++||=||.|.|.+...|.+.. .++++||+++.+++.|++-+. +. .+...|+. .
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~ 117 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM 117 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred CCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhhh
Confidence 456789999999999999988865 589999999999999998752 11 11222332 2
Q ss_pred ccc---chhHHHHHHHhhccCCCCcEEEec
Q 006149 598 HLF---CLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 598 ~l~---~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
|+. ...+.+.++++| +|+|+++..
T Consensus 118 ~~~~~~~~~~L~~~~~~L---kpgG~lii~ 144 (251)
T d1wzna1 118 YFDEEDLRKLFSKVAEAL---KPGGVFITD 144 (251)
T ss_dssp GSCHHHHHHHHHHHHHHE---EEEEEEEEE
T ss_pred cCChHHHHHHHHHHHHHc---CCCcEEEEE
Confidence 221 236788899999 999988764
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=96.71 E-value=0.001 Score=64.58 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=60.0
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-CCCCe---------------eEE------e
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSL---------------KVF------N 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-~d~rl---------------~vf------~ 597 (659)
...++||=||.|.|.+...+.+.+|+++++++|+ |.+++.|++.+.-. -.+|+ |++ .
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh 157 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLL 157 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGG
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccc
Confidence 4568999999999999999999999999999998 78899998876211 11222 433 2
Q ss_pred ccc---chhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HLF---CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l~---~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
++- ...+.+.++++| +|+|.+++
T Consensus 158 ~~~d~~~~~~L~~~~~~L---kPGG~l~i 183 (253)
T d1tw3a2 158 NWPDHDAVRILTRCAEAL---EPGGRILI 183 (253)
T ss_dssp GSCHHHHHHHHHHHHHTE---EEEEEEEE
T ss_pred cCCchhhHHHHHHHHHhc---CCCcEEEE
Confidence 221 236688899999 99996554
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=96.70 E-value=0.0015 Score=64.15 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=68.9
Q ss_pred CCCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhc---CCCCCCC--------------e-eEEeccc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKS--------------L-KVFNHLF 600 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~F---gl~~d~r--------------l-~vf~~l~ 600 (659)
....+||=+|.|.|+++.+|.+.. |..+|++||++|..++.|++.+ |+..... . .+|.++-
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d~p 181 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVP 181 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEecCC
Confidence 345799999999999999998875 7889999999999999999876 4431111 1 2344443
Q ss_pred -chhHHHHHHHhhccCCCCcEEEecC--chHHHHHHHhh
Q 006149 601 -CLQLEEDVNLVLFGLSSESCIKDNS--FPEAAVQLGKL 636 (659)
Q Consensus 601 -~~~f~~~~~~~Lf~~~~~g~~~~n~--~~~~~~~l~~~ 636 (659)
-.++.+.+.++| +|+|.+++.+ ..+....++.+
T Consensus 182 ~p~~~l~~~~~~L---KpGG~lv~~~P~~~Qv~~~~~~l 217 (266)
T d1o54a_ 182 DPWNYIDKCWEAL---KGGGRFATVCPTTNQVQETLKKL 217 (266)
T ss_dssp CGGGTHHHHHHHE---EEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhc---CCCCEEEEEeCcccHHHHHHHHH
Confidence 467889999999 9999988755 33333334444
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.69 E-value=0.00088 Score=62.93 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=58.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC-------------CCCCeeEE------ec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT-------------QDKSLKVF------NH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~-------------~d~rl~vf------~~ 598 (659)
...+||-||.|.|.+...+.+. +.+|++||+++.+++.|++.+ +.. ++.-.|+. .|
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~ 114 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 114 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh
Confidence 3468999999999999999986 468999999999999999764 211 11223432 45
Q ss_pred ccc---hhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 LFC---LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l~~---~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+.+ ..+.+.+.++| +|+|.++...
T Consensus 115 ~~~~d~~~~l~~i~~~L---kpgG~lii~~ 141 (226)
T d1ve3a1 115 FEPLELNQVFKEVRRVL---KPSGKFIMYF 141 (226)
T ss_dssp CCHHHHHHHHHHHHHHE---EEEEEEEEEE
T ss_pred CChhHHHHHHHHHHHHc---CcCcEEEEEE
Confidence 532 34688899999 9999766543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=96.60 E-value=0.00086 Score=65.44 Aligned_cols=80 Identities=15% Similarity=0.070 Sum_probs=60.6
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC---------------CCCCeeEE------ec
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---------------QDKSLKVF------NH 598 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~---------------~d~rl~vf------~~ 598 (659)
....+||=||.|.|.++..|...++. +|++||+++.+++.||+.+.-. ++...|+. .|
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~h 170 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccc
Confidence 45679999999999998876655444 8999999999999999887421 12233433 55
Q ss_pred ccc---hhHHHHHHHhhccCCCCcEEEe
Q 006149 599 LFC---LQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 599 l~~---~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+.. ..|.+.|+++| +++|.++.
T Consensus 171 l~d~d~~~~l~~~~~~L---kpgG~iii 195 (254)
T d1xtpa_ 171 LTDADFVKFFKHCQQAL---TPNGYIFF 195 (254)
T ss_dssp SCHHHHHHHHHHHHHHE---EEEEEEEE
T ss_pred cchhhhHHHHHHHHHhc---CCCcEEEE
Confidence 643 37889999999 99997766
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=96.55 E-value=0.0013 Score=61.17 Aligned_cols=80 Identities=11% Similarity=0.028 Sum_probs=59.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----------------CCCCeeEE------ec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----------------QDKSLKVF------NH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----------------~d~rl~vf------~~ 598 (659)
.|.+||=||.|.|.++.++.+.. .++++||+++.+++.|++...-. .+...|+. .|
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMF 107 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeec
Confidence 45799999999999999999875 57999999999999998765211 12222332 34
Q ss_pred cc---chhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 LF---CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l~---~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+- -..+.+.+.++| +++|+++...
T Consensus 108 ~~~~~~~~~l~~~~~~L---~pgG~~~~~~ 134 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCT---KPGGYNLIVA 134 (198)
T ss_dssp SCTTHHHHHHHHHHHTE---EEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHc---CCCcEEEEEE
Confidence 42 235788888899 9999877654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=96.55 E-value=0.0037 Score=58.85 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=64.2
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC----------------CCCee-EE------
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ----------------DKSLK-VF------ 596 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~----------------d~rl~-vf------ 596 (659)
+-||-||-|.|.....+.+.+|+..+.+||+.+..+..|.+.. |+.. +..++ ++
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P 110 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP 110 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence 4699999999999999999999999999999999999887765 4320 01111 11
Q ss_pred --------ecccchhHHHHHHHhhccCCCCcEEEe--cCchHHH
Q 006149 597 --------NHLFCLQLEEDVNLVLFGLSSESCIKD--NSFPEAA 630 (659)
Q Consensus 597 --------~~l~~~~f~~~~~~~Lf~~~~~g~~~~--n~~~~~~ 630 (659)
..|++.+|.+.++++| +|+|++.. +....+.
T Consensus 111 ~~k~~h~k~Rl~~~~~l~~~~r~L---kpgG~l~i~TD~~~y~~ 151 (204)
T d2fcaa1 111 WPKKRHEKRRLTYSHFLKKYEEVM---GKGGSIHFKTDNRGLFE 151 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHH---TTSCEEEEEESCHHHHH
T ss_pred cchhhhcchhhhHHHHHHHHHHhC---CCCcEEEEEECChHHHH
Confidence 1266789999999999 99997754 4444333
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.54 E-value=0.0023 Score=63.36 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=63.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC-------CC-----Cee------EEec
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ-------DK-----SLK------VFNH 598 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~-------d~-----rl~------vf~~ 598 (659)
....+||=||-|.|+++.++.+.++ ++|++|+|++..++.|++.. |+.. |. +.| +|+|
T Consensus 51 ~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh 129 (280)
T d2fk8a1 51 KPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEH 129 (280)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred CCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHH
Confidence 3457999999999999999988875 59999999999999999875 4421 11 112 2356
Q ss_pred ccc---hhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 LFC---LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l~~---~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+-. ..|++.++++| +|+|.++.+.
T Consensus 130 ~~~~~~~~~f~~i~~~L---kpgG~~~i~~ 156 (280)
T d2fk8a1 130 FGHENYDDFFKRCFNIM---PADGRMTVQS 156 (280)
T ss_dssp TCGGGHHHHHHHHHHHS---CTTCEEEEEE
T ss_pred hhhhhHHHHHHHHHhcc---CCCceEEEEE
Confidence 632 57899999999 9999998764
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.53 E-value=0.0019 Score=61.93 Aligned_cols=81 Identities=14% Similarity=0.148 Sum_probs=64.7
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeE--------------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKV-------------------- 595 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~v-------------------- 595 (659)
-+|++||-||-+.|--+.++....| +.+++.+|+||...++|+++| |+. +++++
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~--~~i~~~~g~a~~~L~~l~~~~~~~~ 135 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD--HKIDFREGPALPVLDEMIKDEKNHG 135 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG--GGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc--cceeeeehHHHHHHHHHHhccccCC
Confidence 4678999999999999999998887 689999999999999999999 442 34422
Q ss_pred -E-------ecccchhHHHHHHHhhccCCCCcEEEe-cC
Q 006149 596 -F-------NHLFCLQLEEDVNLVLFGLSSESCIKD-NS 625 (659)
Q Consensus 596 -f-------~~l~~~~f~~~~~~~Lf~~~~~g~~~~-n~ 625 (659)
| ++-....+++.+...| +++|++++ |.
T Consensus 136 ~fD~iFiDa~k~~y~~~~e~~~~ll---~~gGiii~DNv 171 (227)
T d1susa1 136 SYDFIFVDADKDNYLNYHKRLIDLV---KVGGVIGYDNT 171 (227)
T ss_dssp CBSEEEECSCSTTHHHHHHHHHHHB---CTTCCEEEETT
T ss_pred ceeEEEeccchhhhHHHHHHHHhhc---CCCcEEEEccC
Confidence 2 2233567888899999 99997755 66
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=96.51 E-value=0.0024 Score=60.62 Aligned_cols=78 Identities=15% Similarity=0.081 Sum_probs=59.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC------------CCCCeeEE------eccc-c
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVF------NHLF-C 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~------------~d~rl~vf------~~l~-~ 601 (659)
.+.+||=||.|.|.+++.+.+.. .+|++||++|++++.|++-+.-. .+.+.|+. +|+. .
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d~ 97 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP 97 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred CCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCCH
Confidence 46789999999999999998875 47999999999999999876421 12233332 5664 4
Q ss_pred hhHHHHHH-HhhccCCCCcEEEe
Q 006149 602 LQLEEDVN-LVLFGLSSESCIKD 623 (659)
Q Consensus 602 ~~f~~~~~-~~Lf~~~~~g~~~~ 623 (659)
..+...++ ++| +|+|.+..
T Consensus 98 ~~~l~~i~~~~L---k~gG~l~i 117 (225)
T d2p7ia1 98 VALLKRINDDWL---AEGGRLFL 117 (225)
T ss_dssp HHHHHHHHHTTE---EEEEEEEE
T ss_pred HHHHHHHHHHhc---CCCceEEE
Confidence 66677777 689 99998765
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.50 E-value=0.0033 Score=62.10 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=61.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC------------------------CCCCCCeeEE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG------------------------FTQDKSLKVF 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg------------------------l~~d~rl~vf 596 (659)
..++||-||.|.|.+...|.+.. .+|++||+++.+++.|++... ++..+..|+.
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g--~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v 133 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 133 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHcC--CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence 45799999999999999998873 689999999999999987531 1223334322
Q ss_pred -------ecccc--------hhHHHHHHHhhccCCCCcEEEecCch
Q 006149 597 -------NHLFC--------LQLEEDVNLVLFGLSSESCIKDNSFP 627 (659)
Q Consensus 597 -------~~l~~--------~~f~~~~~~~Lf~~~~~g~~~~n~~~ 627 (659)
.|+.. ..+.+.++++| +|+|+++...+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---kpgG~li~~~~~ 176 (292)
T d1xvaa_ 134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMV---RPGGLLVIDHRN 176 (292)
T ss_dssp EECSSCGGGSCCTTSSSHHHHHHHHHHHHTE---EEEEEEEEEEEC
T ss_pred EEecCchhhcCCcccChHHHHHHHHHHHHHc---CcCcEEEEeecC
Confidence 34432 24889999999 999999886643
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=96.44 E-value=0.0033 Score=61.06 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=68.0
Q ss_pred CCCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhcC-CCCCCCe----------------e-EEecc-c
Q 006149 541 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFG-FTQDKSL----------------K-VFNHL-F 600 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~Fg-l~~d~rl----------------~-vf~~l-~ 600 (659)
...+||-+|.|.|+++.+|.+. .|..+++++|+++..++.|++.+. +....++ | ||-++ .
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~p~ 164 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPD 164 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCSC
T ss_pred CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecCCc
Confidence 3479999999999999999876 577899999999999999998651 1111122 2 22233 3
Q ss_pred chhHHHHHHHhhccCCCCcEEEecC--chHHHHHHHhhcc
Q 006149 601 CLQLEEDVNLVLFGLSSESCIKDNS--FPEAAVQLGKLVK 638 (659)
Q Consensus 601 ~~~f~~~~~~~Lf~~~~~g~~~~n~--~~~~~~~l~~~~~ 638 (659)
..++.+.+.++| +|+|+++..+ ..+....++.+.+
T Consensus 165 p~~~l~~~~~~L---KpGG~lv~~~P~i~Qv~~~~~~l~~ 201 (250)
T d1yb2a1 165 PWNHVQKIASMM---KPGSVATFYLPNFDQSEKTVLSLSA 201 (250)
T ss_dssp GGGSHHHHHHTE---EEEEEEEEEESSHHHHHHHHHHSGG
T ss_pred hHHHHHHHHHhc---CCCceEEEEeCCcChHHHHHHHHHH
Confidence 567889999999 9999998743 3444444555543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=96.41 E-value=0.0045 Score=60.92 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=62.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhcCCC---------------CCCCeeEE------e
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT---------------QDKSLKVF------N 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~Fgl~---------------~d~rl~vf------~ 597 (659)
.+|.+||=||.|.|.+...|...+| +.++++||+++.+++.|++.+.-. .++..|+. .
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l~ 105 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLL 105 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCGG
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhhh
Confidence 5678999999999999999999887 478999999999999999876321 01123333 3
Q ss_pred ccc-chhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HLF-CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l~-~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
|+- -..+.+.+.++| +|+|.++.
T Consensus 106 ~~~d~~~~l~~~~~~L---kpgG~lii 129 (281)
T d2gh1a1 106 HMTTPETMLQKMIHSV---KKGGKIIC 129 (281)
T ss_dssp GCSSHHHHHHHHHHTE---EEEEEEEE
T ss_pred cCCCHHHHHHHHHHHc---CcCcEEEE
Confidence 442 456888999999 99996653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=96.38 E-value=0.0034 Score=60.16 Aligned_cols=82 Identities=20% Similarity=0.137 Sum_probs=61.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC------------CCCCeeEE-------e
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT------------QDKSLKVF-------N 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~------------~d~rl~vf-------~ 597 (659)
+.+++||=||-|.|.+...|.+.. .+|++||+++.+++.|++-+ ++. .+...|+. .
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence 456899999999999999999876 47999999999999998754 211 12233532 2
Q ss_pred cccc----hhHHHHHHHhhccCCCCcEEEecCc
Q 006149 598 HLFC----LQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 598 ~l~~----~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
|+.+ ..+++.+++.| +|+|.++.+.+
T Consensus 114 ~~~~~~~~~~~l~~~~~~L---kpgG~~i~~~~ 143 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHL---KEGGVFIFDIN 143 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTE---EEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhC---CCCeEEEEEeC
Confidence 3332 24788999999 99998886553
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.28 E-value=0.008 Score=54.78 Aligned_cols=94 Identities=15% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCccc
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (659)
+++++||-+|||. |..+..+++. |..+|+++|.++.-++.+++.-. ..++ |..+.+ .....||
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa-----~~~i--~~~~~~~~~~v~~~t~g~G~D 98 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA-----TDIL--NYKNGHIEDQVMKLTNGKGVD 98 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC-----SEEE--CGGGSCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc-----cccc--cccchhHHHHHHHHhhccCcc
Confidence 6889999999997 7778888876 66689999999977776643221 1122 222211 1234599
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+|++.-.- + ..++...+.++|+|+++++...
T Consensus 99 ~vid~~g~-----~--------~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 99 RVIMAGGG-----S--------ETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp EEEECSSC-----T--------THHHHHHHHEEEEEEEEECCCC
T ss_pred eEEEccCC-----H--------HHHHHHHHHHhcCCEEEEEeec
Confidence 99864221 1 4578888999999999998754
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.18 E-value=0.006 Score=56.45 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=57.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC---------------CCCeeEE-e---
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ---------------DKSLKVF-N--- 597 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~---------------d~rl~vf-~--- 597 (659)
....+||=||.|.|.++..+....+ ++++||+||.++++|++-+ ++.. +...|+. .
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~p 128 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPP 128 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCC
T ss_pred CCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEEEccc
Confidence 4457999999999999999998875 6999999999999998743 4321 1122322 1
Q ss_pred -cc---cchhHHHHHHHhhccCCCCcEEE
Q 006149 598 -HL---FCLQLEEDVNLVLFGLSSESCIK 622 (659)
Q Consensus 598 -~l---~~~~f~~~~~~~Lf~~~~~g~~~ 622 (659)
|. ....+.+.+.+.| +|+|.+.
T Consensus 129 ~~~~~~~~~~~l~~~~~~L---kpgG~l~ 154 (194)
T d1dusa_ 129 IRAGKEVLHRIIEEGKELL---KDNGEIW 154 (194)
T ss_dssp STTCHHHHHHHHHHHHHHE---EEEEEEE
T ss_pred EEecchhhhhHHHHHHHhc---CcCcEEE
Confidence 11 1356778889999 9999653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.13 E-value=0.0088 Score=54.61 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=63.6
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----------CCCC
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------FMDE 133 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----------~~~~ 133 (659)
+++.+||.+|||. |.++..+++. |..+|+++|.++.-++.+++ . +.. ...|..+.. ....
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~-l---Ga~---~vi~~~~~~~~~~~~~i~~~~~~~ 99 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE-I---GAD---LTLNRRETSVEERRKAIMDITHGR 99 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH-T---TCS---EEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CCCCEEEEECCCccchhheeccccccccccccccccccccccccc-c---cce---EEEeccccchHHHHHHHHHhhCCC
Confidence 6789999999985 6667777766 76689999999988876533 2 111 112222221 1234
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.+|+|++.- ..+ ..++...+.|++||+++++...
T Consensus 100 g~Dvvid~v-----G~~--------~~~~~a~~~l~~~G~iv~~G~~ 133 (182)
T d1vj0a2 100 GADFILEAT-----GDS--------RALLEGSELLRRGGFYSVAGVA 133 (182)
T ss_dssp CEEEEEECS-----SCT--------THHHHHHHHEEEEEEEEECCCC
T ss_pred CceEEeecC-----Cch--------hHHHHHHHHhcCCCEEEEEeec
Confidence 599998532 211 4578889999999999888654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=96.07 E-value=0.0043 Score=58.67 Aligned_cols=81 Identities=14% Similarity=0.063 Sum_probs=56.6
Q ss_pred CCCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhcCCCC-----------------CCCeeEE-eccc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQ-----------------DKSLKVF-NHLF 600 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~Fgl~~-----------------d~rl~vf-~~l~ 600 (659)
....+||-||.|.|.++..+.+.. +..+|+++|+||.+++.|++-+.-.. +...|+. ..-.
T Consensus 74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (213)
T d1dl5a1 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG 153 (213)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhcc
Confidence 344699999999999999887754 67799999999999999998763211 1112322 1111
Q ss_pred chhHHHHHHHhhccCCCCcEEEe
Q 006149 601 CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 601 ~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
-.++-+.+.+.| +|+|.++.
T Consensus 154 ~~~~p~~l~~~L---kpGG~lv~ 173 (213)
T d1dl5a1 154 VDEVPETWFTQL---KEGGRVIV 173 (213)
T ss_dssp BSCCCHHHHHHE---EEEEEEEE
T ss_pred HHHhHHHHHHhc---CCCcEEEE
Confidence 123335677789 99998765
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.87 E-value=0.019 Score=55.89 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=68.6
Q ss_pred CCCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhc-----CCCC---------------CCCee-EEec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF-----GFTQ---------------DKSLK-VFNH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~F-----gl~~---------------d~rl~-vf~~ 598 (659)
...+||=+|.|.|+++.+|.+. .|+-++..+|++++.++.|++-| +..+ +..+| ||-+
T Consensus 96 PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~ld 175 (264)
T d1i9ga_ 96 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLD 175 (264)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEE
T ss_pred CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEEe
Confidence 4579999999999999999876 68889999999999999998743 1111 11223 3434
Q ss_pred c-cchhHHHHHHHhhccCCCCcEEEe--cCchHHHHHHHhhc
Q 006149 599 L-FCLQLEEDVNLVLFGLSSESCIKD--NSFPEAAVQLGKLV 637 (659)
Q Consensus 599 l-~~~~f~~~~~~~Lf~~~~~g~~~~--n~~~~~~~~l~~~~ 637 (659)
+ .-.++.+.++++| +|+|.++. -+..+....++.+.
T Consensus 176 lp~P~~~l~~~~~~L---kpGG~lv~~~P~i~Qv~~~~~~l~ 214 (264)
T d1i9ga_ 176 MLAPWEVLDAVSRLL---VAGGVLMVYVATVTQLSRIVEALR 214 (264)
T ss_dssp SSCGGGGHHHHHHHE---EEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcc---CCCCEEEEEeCccChHHHHHHHHH
Confidence 4 2467888999999 99998877 33555555555553
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.80 E-value=0.0088 Score=59.10 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=63.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-CCCCCCe--------------e------EEec
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSL--------------K------VFNH 598 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-l~~d~rl--------------~------vf~~ 598 (659)
....+||=||.|.|+++.++.+.++ ++|++|.|+++-++.|++... ....+++ | .|+|
T Consensus 61 ~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~~~eh 139 (285)
T d1kpga_ 61 QPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEH 139 (285)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred CCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceeeehhhhh
Confidence 3447999999999999999998885 799999999999999987651 1112233 2 2256
Q ss_pred cc---chhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 LF---CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l~---~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+. -..|++.|+++| +|+|.++.+.
T Consensus 140 ~~~~~~~~~~~~~~r~L---kpgG~~~l~~ 166 (285)
T d1kpga_ 140 FGHERYDAFFSLAHRLL---PADGVMLLHT 166 (285)
T ss_dssp TCTTTHHHHHHHHHHHS---CTTCEEEEEE
T ss_pred cCchhHHHHHHHHHhhc---CCCCcEEEEE
Confidence 63 257999999999 9999888655
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.79 E-value=0.0093 Score=59.10 Aligned_cols=82 Identities=12% Similarity=0.108 Sum_probs=63.6
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------------CCCee------EEec
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------------DKSLK------VFNH 598 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------------d~rl~------vf~~ 598 (659)
....+||=||-|-|+++.++...++ +++++|.|++.-++.|++.. |+.. +.+.| .|+|
T Consensus 60 ~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie~~eH 138 (291)
T d1kpia_ 60 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEH 138 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGG
T ss_pred CCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceEeechhHHh
Confidence 4457999999999999999988776 59999999999999988765 4431 11222 2356
Q ss_pred ccc----------hhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 LFC----------LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l~~----------~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+.. ..|++.|+++| +|+|.++.+.
T Consensus 139 ~~~~~~~~~~~~~~~~f~~i~~~L---kpgG~~~l~~ 172 (291)
T d1kpia_ 139 FADGAGDAGFERYDTFFKKFYNLT---PDDGRMLLHT 172 (291)
T ss_dssp TTCCSSCCSTTHHHHHHHHHHHTS---CTTCEEEEEE
T ss_pred cchhhhhhHHHHHHHHHHHHHHhC---CCCCceEEEE
Confidence 643 47999999999 9999888765
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.75 E-value=0.0065 Score=57.49 Aligned_cols=46 Identities=7% Similarity=0.099 Sum_probs=41.5
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+|++||-||.|.|..+.++...++ +.++++||+||..++.|++++
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~ 101 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQML 101 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHH
Confidence 4678999999999999999988765 589999999999999999887
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=95.73 E-value=0.0078 Score=54.60 Aligned_cols=45 Identities=13% Similarity=-0.045 Sum_probs=39.9
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
+...|||.||-|.|-.+.+|.++. .+|++|||++.+++.|++..+
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G--~~V~gvD~S~~~i~~a~~~~~ 63 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQG--YHVVGAELSEAAVERYFTERG 63 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHC
T ss_pred CCCCEEEEecCcCCHHHHHHHHcC--CceEeecccHHHHHHHHHHhc
Confidence 455799999999999999999874 699999999999999998653
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.70 E-value=0.0046 Score=58.31 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=59.7
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----------CCC--------CeeE-Eecc---
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----------QDK--------SLKV-FNHL--- 599 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----------~d~--------rl~v-f~~l--- 599 (659)
..+||=||.|.|.+..+|....|+.+|.+||+.|.+++.|++-..-. .++ ..++ |..+
T Consensus 57 g~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~ 136 (209)
T d1nt2a_ 57 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQK 136 (209)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCST
T ss_pred CCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecccCh
Confidence 46899999999999999999999889999999999999987764110 111 1132 2222
Q ss_pred -cchhHHHHHHHhhccCCCCcEEEe
Q 006149 600 -FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 600 -~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
....|...++++| +++|.++.
T Consensus 137 ~~~~~~l~~~~~~L---kpgG~l~i 158 (209)
T d1nt2a_ 137 NQIEILKANAEFFL---KEKGEVVI 158 (209)
T ss_dssp THHHHHHHHHHHHE---EEEEEEEE
T ss_pred hhHHHHHHHHHHHh---ccCCeEEE
Confidence 2456788899999 99997755
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.033 Score=54.05 Aligned_cols=82 Identities=13% Similarity=0.075 Sum_probs=58.3
Q ss_pred CCCeEEEEccCcchHHHHHHh----hCCC--ccEEEEecChhHHHHHHhhcCCC--------------------------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHE----CMPF--VGIEAVELDLTMLNLAEDYFGFT-------------------------- 588 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~----~~p~--~~i~~VEiDp~V~~vA~~~Fgl~-------------------------- 588 (659)
...+||=||.|.|.+...|.+ .+|+ .++++||+++.+++.|++.+.-.
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK 119 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence 345899999999987666543 4554 46799999999999999875321
Q ss_pred CCCCeeEE------eccc-chhHHHHHHHhhccCCCCcEEEecC
Q 006149 589 QDKSLKVF------NHLF-CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 589 ~d~rl~vf------~~l~-~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
++...|+. .|+- -..+.+.++++| +|+|.++...
T Consensus 120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~L---kpgG~l~i~~ 160 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLL---GTNAKMLIIV 160 (280)
T ss_dssp SCCCEEEEEEESCGGGCSCHHHHHHHHHHTE---EEEEEEEEEE
T ss_pred CCCceeEEEEccceecCCCHHHHHHHHHhhC---CCCCEEEEEE
Confidence 12334433 3442 457889999999 9999776644
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.62 E-value=0.014 Score=53.39 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=59.9
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhh---cCCCCCCCeeEE--------------ec-----
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY---FGFTQDKSLKVF--------------NH----- 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~---Fgl~~d~rl~vf--------------~~----- 598 (659)
...+||=||.|.|.++..+.... .+|++||+||..++.|++- +|+.+ +++++ +.
T Consensus 33 ~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~--~v~~~~gda~~~~~~~~~~D~v~~~~ 108 (186)
T d1l3ia_ 33 KNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGD--NVTLMEGDAPEALCKIPDIDIAVVGG 108 (186)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCT--TEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCc--ceEEEECchhhcccccCCcCEEEEeC
Confidence 34689999999999999998765 4899999999999999975 46632 44322 11
Q ss_pred --ccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 --LFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 --l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
-...++.+.+.+.| +|+|.++.+.
T Consensus 109 ~~~~~~~~~~~~~~~L---kpgG~lvi~~ 134 (186)
T d1l3ia_ 109 SGGELQEILRIIKDKL---KPGGRIIVTA 134 (186)
T ss_dssp CTTCHHHHHHHHHHTE---EEEEEEEEEE
T ss_pred ccccchHHHHHHHHHh---CcCCEEEEEe
Confidence 12457788888999 9999887765
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=0.012 Score=55.82 Aligned_cols=79 Identities=9% Similarity=0.035 Sum_probs=55.6
Q ss_pred CCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhcC---C-------------------CCCCCeeEE-e
Q 006149 542 SVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFG---F-------------------TQDKSLKVF-N 597 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~Fg---l-------------------~~d~rl~vf-~ 597 (659)
..+||.||-|.|-++..|.+. .|..+|++||+++++++.|++.+. + +++...|+. -
T Consensus 77 g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~ 156 (224)
T d1i1na_ 77 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHV 156 (224)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhhh
Confidence 369999999999888888764 567799999999999999987752 1 112223332 1
Q ss_pred cccchhHHHHHHHhhccCCCCcEEEe
Q 006149 598 HLFCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 ~l~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.-...+..+.+.+.| +|+|.++.
T Consensus 157 ~~~~~~ip~~l~~~L---kpGG~LV~ 179 (224)
T d1i1na_ 157 GAAAPVVPQALIDQL---KPGGRLIL 179 (224)
T ss_dssp CSBBSSCCHHHHHTE---EEEEEEEE
T ss_pred hcchhhcCHHHHhhc---CCCcEEEE
Confidence 111223445677789 99998876
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.60 E-value=0.017 Score=54.07 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=60.6
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC----------------CCCee-EE------
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ----------------DKSLK-VF------ 596 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~----------------d~rl~-vf------ 596 (659)
+-||=||-|.|.....+...+|+..+.+||+.+.++..|.+.. +++. +..++ ++
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdP 112 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDP 112 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccccc
Confidence 4699999999999999999999999999999999988876543 3320 11111 21
Q ss_pred --------ecccchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 --------NHLFCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 --------~~l~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
..+.+.+|.+.+.++| +++|.+..
T Consensus 113 w~K~~h~krRl~~~~~l~~~~~~L---kpgG~l~i 144 (204)
T d1yzha1 113 WPKKRHEKRRLTYKTFLDTFKRIL---PENGEIHF 144 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHS---CTTCEEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHhC---CCCcEEEE
Confidence 1267889999999999 99997754
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.45 E-value=0.023 Score=52.62 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=67.1
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCccc
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (659)
+++++||.+|||. |..+..+++. |...|+++|.++.-++.+++. + .... .+-.+.+ .....+|
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----G--a~~~-~~~~~~~~~~~i~~~t~g~g~D 96 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G--FEIA-DLSLDTPLHEQIAALLGEPEVD 96 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T--CEEE-ETTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----c--ccEE-EeCCCcCHHHHHHHHhCCCCcE
Confidence 6899999999998 5566777754 777999999999888765432 1 1211 1212111 1235689
Q ss_pred EEEecccccccCCccc--chHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 137 VILDKGGLDALMEPEL--GHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~--~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
++++.-.......... ........++.+.+.++|||+++++-.
T Consensus 97 ~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 97 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred EEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 9997543221110000 000023789999999999999998865
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.40 E-value=0.057 Score=48.15 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=62.7
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCc
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDET 134 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~s 134 (659)
+++++||.+|||. |.++..+++. |. +|+++|.++.-++.+++. +....+ ..+-.... .....
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----ga~~~~-~~~~~~~~~~~~~~~~~~~~g~g 98 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GADVTL-VVDPAKEEESSIIERIRSAIGDL 98 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TCSEEE-ECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----CCcEEE-eccccccccchhhhhhhcccccC
Confidence 6789999999994 5566666665 65 999999999877765432 222222 22211111 11356
Q ss_pred ccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 135 FDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+|+|++.- .. ...++...+.|+++|++++....
T Consensus 99 ~D~vid~~-----g~--------~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 99 PNVTIDCS-----GN--------EKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp CSEEEECS-----CC--------HHHHHHHHHHSCTTCEEEECSCC
T ss_pred CceeeecC-----CC--------hHHHHHHHHHHhcCCceEEEecC
Confidence 89998632 11 25688888999999999988754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.39 E-value=0.012 Score=56.20 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=58.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-------CCCC-----------ee-EEecc--
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-------QDKS-----------LK-VFNHL-- 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-------~d~r-----------l~-vf~~l-- 599 (659)
...+||=||.|.|+.+..|....|+..|.+||++|.+++.|++--.-. .|.+ ++ +|..+
T Consensus 74 pG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~ 153 (230)
T d1g8sa_ 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQ 153 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCS
T ss_pred CCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccccc
Confidence 346899999999999999999999889999999999999887642110 0100 11 11212
Q ss_pred --cchhHHHHHHHhhccCCCCcEEEe
Q 006149 600 --FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 600 --~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
-...+...+++.| +|+|.++.
T Consensus 154 ~~~~~~~l~~~~r~L---KpgG~~~i 176 (230)
T d1g8sa_ 154 PNQAEILIKNAKWFL---KKGGYGMI 176 (230)
T ss_dssp TTHHHHHHHHHHHHE---EEEEEEEE
T ss_pred hHHHHHHHHHHHHhc---ccCceEEE
Confidence 2456678899999 99997665
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.03 Score=56.06 Aligned_cols=76 Identities=9% Similarity=-0.005 Sum_probs=56.9
Q ss_pred hHHHHHHHHhhCC---CCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecC
Q 006149 51 PQLRDPLISLIGA---PTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (659)
Q Consensus 51 ~~l~~~l~~~l~~---~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~ 126 (659)
+.+...+.+.+.. .....+..|||||+|.|.+|..|.+. +..+|+++|+++..++.+.++.. ..+++++.+|+.
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~~~~~ii~~D~l 100 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--GSPLQILKRDPY 100 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--TSSCEEECSCTT
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--CCCcEEEeCchh
Confidence 3455555555432 11124678999999999999999887 44689999999999998876652 467999999987
Q ss_pred CC
Q 006149 127 SM 128 (659)
Q Consensus 127 ~l 128 (659)
..
T Consensus 101 ~~ 102 (322)
T d1i4wa_ 101 DW 102 (322)
T ss_dssp CH
T ss_pred hc
Confidence 54
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.19 E-value=0.0091 Score=53.70 Aligned_cols=80 Identities=14% Similarity=0.168 Sum_probs=55.5
Q ss_pred CeEEEEccC--cchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CCC-----CeeEEe-c--c-cchhHHHH
Q 006149 543 VKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QDK-----SLKVFN-H--L-FCLQLEED 607 (659)
Q Consensus 543 ~~vLiiGlG--gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d~-----rl~vf~-~--l-~~~~f~~~ 607 (659)
++|+|||+| ||++++.|++..+..+|.++|.|++..+.|++.-... ... ..|+.- . . ...+..+.
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~~ 81 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKK 81 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhhhh
Confidence 579999999 9999999999888889999999999999998753221 101 113221 1 1 23445556
Q ss_pred HHHhhccCCCCcEEEecC
Q 006149 608 VNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 608 ~~~~Lf~~~~~g~~~~n~ 625 (659)
+...+ +++-++...+
T Consensus 82 l~~~~---~~~~ii~d~~ 96 (171)
T d2g5ca2 82 LSYIL---SEDATVTDQG 96 (171)
T ss_dssp HHHHS---CTTCEEEECC
T ss_pred hhccc---cccccccccc
Confidence 66667 7777766544
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.18 E-value=0.062 Score=48.36 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=63.1
Q ss_pred CCCCCeEEEECCCcch-HHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-----CCCCCcccEE
Q 006149 66 SSPPPQILVPGCGNSR-LSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-----QFMDETFDVI 138 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~-~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l-----~~~~~sFDvV 138 (659)
.+++.+||-+|||.-. .+..+++. |...|+.+|.++.-++.+++.- -..++..+-.+. .+.++.||+|
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G-----a~~~i~~~~~~~~~~i~~~t~gg~D~v 100 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG-----ATHVINSKTQDPVAAIKEITDGGVNFA 100 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT-----CSEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC-----CeEEEeCCCcCHHHHHHHHcCCCCcEE
Confidence 4789999999998644 34555554 7778899999998777664321 112222221111 1234679999
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
++.- .. ...++...++++|+|+++++..
T Consensus 101 id~~-----G~--------~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 101 LEST-----GS--------PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EECS-----CC--------HHHHHHHHHTEEEEEEEEECCC
T ss_pred EEcC-----Cc--------HHHHHHHHhcccCceEEEEEee
Confidence 8532 11 2668889999999999998764
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=95.17 E-value=0.028 Score=53.74 Aligned_cols=83 Identities=12% Similarity=-0.003 Sum_probs=56.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC----------------CCCCeeEE----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT----------------QDKSLKVF---- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~----------------~d~rl~vf---- 596 (659)
+...+||=||.|.|.....+.+... .++++||+++.+++.|++.+ +.. .+...|+.
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 3447899999996665555555433 37999999999999998653 110 11223444
Q ss_pred --ecccc-----hhHHHHHHHhhccCCCCcEEEecCc
Q 006149 597 --NHLFC-----LQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 597 --~~l~~-----~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
.|++. ..+.+.++++| +|+|.+....+
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~L---k~gG~~i~~~~ 135 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHL---RPGGYFIMTVP 135 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTE---EEEEEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhcee---CCCCEEEEEec
Confidence 33332 25778899999 99998877553
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.17 E-value=0.016 Score=52.20 Aligned_cols=97 Identities=16% Similarity=0.265 Sum_probs=61.7
Q ss_pred CCCCeEEEECCC-cchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE-eecCCC-CCCCCcccEEEecc
Q 006149 67 SPPPQILVPGCG-NSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV-MDMTSM-QFMDETFDVILDKG 142 (659)
Q Consensus 67 ~~~~~ILDiGCG-~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~-~D~~~l-~~~~~sFDvVi~~g 142 (659)
+++++||.+||| .|.++..+++. |. +|+++|.++.-++.+++.- .. .++. .+-.+. .-..+.||+|++.-
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lG----a~-~~i~~~~~~~~~~~~~~~~d~vi~~~ 99 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMG----AD-HYIATLEEGDWGEKYFDTFDLIVVCA 99 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHT----CS-EEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred CCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccC----Cc-EEeeccchHHHHHhhhcccceEEEEe
Confidence 688999999998 46666777765 76 8999999998777664431 11 1221 111111 11235799988642
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.-.. + ..+....+.|+|+|+++++...
T Consensus 100 ~~~~--~---------~~~~~~~~~l~~~G~iv~~G~~ 126 (168)
T d1piwa2 100 SSLT--D---------IDFNIMPKAMKVGGRIVSISIP 126 (168)
T ss_dssp SCST--T---------CCTTTGGGGEEEEEEEEECCCC
T ss_pred cCCc--c---------chHHHHHHHhhccceEEEeccc
Confidence 2111 1 1255678899999999988654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=95.04 E-value=0.026 Score=54.35 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=60.7
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHH---HHHhhcCC-------CCcEEEEeecC
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM---LRRNVRDR-------SDMRWRVMDMT 126 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~---~~~~~~~~-------~~i~~~~~D~~ 126 (659)
+.+.+.. ......+|||.-||.|..+..++..|. +|++++-++.+..-+ .+++.... .+++++++|..
T Consensus 78 l~kA~gl-~~~~~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~ 155 (250)
T d2oyra1 78 VAKAVGI-KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_dssp HHHHTTC-BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred HHHHhcC-CCCCCCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHH
Confidence 4555542 112345899999999999999999986 899999999765433 33333221 36899999976
Q ss_pred CC-CCCCCcccEEEeccccc
Q 006149 127 SM-QFMDETFDVILDKGGLD 145 (659)
Q Consensus 127 ~l-~~~~~sFDvVi~~g~l~ 145 (659)
++ .-...+||+|+.-.++.
T Consensus 156 ~~L~~~~~~~DvIYlDPMFp 175 (250)
T d2oyra1 156 TALTDITPRPQVVYLDPMFP 175 (250)
T ss_dssp HHSTTCSSCCSEEEECCCCC
T ss_pred HHHhccCCCCCEEEECCCCc
Confidence 64 32356799999655554
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.028 Score=55.65 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=54.0
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhh--cCCC---------------CCCCeeEE------ec
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY--FGFT---------------QDKSLKVF------NH 598 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~--Fgl~---------------~d~rl~vf------~~ 598 (659)
.++||-||.|.|.|+.++.+..+. +|.+||+.+.+..+++.- .++. ++++.|+. .+
T Consensus 36 ~~~VLDiGcG~G~lsl~aa~~Ga~-~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~ 114 (311)
T d2fyta1 36 DKVVLDVGCGTGILSMFAAKAGAK-KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF 114 (311)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS-EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred cCEEEEECCCCCHHHHHHHHcCCC-EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeee
Confidence 468999999999999999998765 899999999987654422 1221 12233444 12
Q ss_pred ccc----hhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 LFC----LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l~~----~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+.. ..+...+++.| +|+|.+..+.
T Consensus 115 ~~~e~~~~~~~~a~~~~L---kp~G~iip~~ 142 (311)
T d2fyta1 115 LLFESMLDSVLYAKNKYL---AKGGSVYPDI 142 (311)
T ss_dssp BTTTCHHHHHHHHHHHHE---EEEEEEESCE
T ss_pred cccccccHHHHHHHHhcC---CCCcEEeccc
Confidence 222 24444566788 9999887654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.89 E-value=0.042 Score=49.76 Aligned_cols=97 Identities=14% Similarity=0.020 Sum_probs=64.7
Q ss_pred CCCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-------CCCCccc
Q 006149 66 SSPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------FMDETFD 136 (659)
Q Consensus 66 ~~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------~~~~sFD 136 (659)
.+++++||-+|||. |.++..+++. |...|+.+|.++.-++.+++ . +. ..++...-.+.. ...+.+|
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~-~---Ga-~~~i~~~~~~~~~~~~~~~~~~~G~d 100 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA-L---GA-TDCLNPRELDKPVQDVITELTAGGVD 100 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-T---TC-SEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH-h---CC-CcccCCccchhhhhhhHhhhhcCCCc
Confidence 46889999999998 7777877776 77789999999977665433 2 11 112211111100 1235689
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccC-eEEEEEEcC
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSG-GKFVCLTLA 180 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpG-G~lvi~~~~ 180 (659)
+|++.- . ....+....+.|++| |+++++-..
T Consensus 101 ~vie~~-----G--------~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 101 YSLDCA-----G--------TAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp EEEESS-----C--------CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred EEEEec-----c--------cchHHHHHHHHhhcCCeEEEecCCC
Confidence 998532 1 126799999999996 999988654
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.70 E-value=0.034 Score=55.32 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=54.1
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhh--cCCCC---------------CCCeeEE------ec
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY--FGFTQ---------------DKSLKVF------NH 598 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~--Fgl~~---------------d~rl~vf------~~ 598 (659)
.++||-||.|.|.|+.++.+.... +|++||+++.+..+.+.. -++.+ .++.|+. ..
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~-~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~ 112 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGAR-KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 112 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS-EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred cCEEEEEecCCcHHHHHHHHhCCC-EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence 368999999999999999987655 899999999765444321 13221 1233443 22
Q ss_pred ccc----hhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 LFC----LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l~~----~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+.. .++...+++.| +|+|.+..+.
T Consensus 113 l~~e~~~~~~l~~~~r~L---kp~G~iiP~~ 140 (316)
T d1oria_ 113 LFYESMLNTVLHARDKWL---APDGLIFPDR 140 (316)
T ss_dssp BTBTCCHHHHHHHHHHHE---EEEEEEESCE
T ss_pred eccHHHHHHHHHHHHhcC---CCCeEEEeee
Confidence 332 34556778899 9999887654
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=94.62 E-value=0.033 Score=52.78 Aligned_cols=44 Identities=27% Similarity=0.423 Sum_probs=38.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
...+||-||.|.|-++-.|.+.. .+|++||+|+..++.|++-+.
T Consensus 70 ~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~ 113 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLS 113 (224)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHT
T ss_pred ccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHh
Confidence 34689999999999998888875 489999999999999998764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.61 E-value=0.074 Score=47.39 Aligned_cols=94 Identities=21% Similarity=0.285 Sum_probs=62.1
Q ss_pred CCCCeEEEECC-C-cchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCcc
Q 006149 67 SPPPQILVPGC-G-NSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETF 135 (659)
Q Consensus 67 ~~~~~ILDiGC-G-~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sF 135 (659)
.++++||-+|| | .|.++..+++. |...|+++|.++.-++.+++. +.. .++ |..+.+ ...+.|
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~-~~i--~~~~~~~~~~~~~~~~~~~~ 98 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD-YVI--NASMQDPLAEIRRITESKGV 98 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS-EEE--ETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc-eee--ccCCcCHHHHHHHHhhcccc
Confidence 68899999997 3 44555655554 777999999999877755432 111 122 222211 123569
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+|++... . ...++...+.++|||+++++.+.
T Consensus 99 d~vid~~g-----~--------~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 99 DAVIDLNN-----S--------EKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEEEESCC-----C--------HHHHTTGGGGEEEEEEEEECCSS
T ss_pred hhhhcccc-----c--------chHHHhhhhhcccCCEEEEeccc
Confidence 99986321 1 26678889999999999988654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=94.43 E-value=0.035 Score=52.98 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=44.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
...+||-||-|-|+|...|.... .++++||+|+..++..++-|. +.+++.++
T Consensus 21 ~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~--~~~n~~i~ 72 (235)
T d1qama_ 21 EHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLV--DHDNFQVL 72 (235)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTT--TCCSEEEE
T ss_pred CCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhh--cccchhhh
Confidence 45689999999999999999874 489999999999999998774 34567666
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.11 Score=46.39 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=62.8
Q ss_pred CCCCeEEEECCCcchH-HHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCccc
Q 006149 67 SPPPQILVPGCGNSRL-SEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~-s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (659)
+++++||-+|||...+ +..++.. |..+|+++|.++.-++.+++ . +.. .++..+-.+.. -....+|
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~-~---Ga~-~~~~~~~~~~~~~~~~~~~~~g~g~D 99 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE-I---GAD-LVLQISKESPQEIARKVEGQLGCKPE 99 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-T---TCS-EEEECSSCCHHHHHHHHHHHHTSCCS
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH-h---CCc-ccccccccccccccccccccCCCCce
Confidence 6789999999987544 4555554 77789999999988775533 2 111 12221111110 0124689
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+|++.-. . ...++...+.+++||++++.....
T Consensus 100 vvid~~G-----~--------~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 100 VTIECTG-----A--------EASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp EEEECSC-----C--------HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred EEEeccC-----C--------chhHHHHHHHhcCCCEEEEEecCC
Confidence 9986321 1 267889999999999999987643
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.037 Score=52.11 Aligned_cols=45 Identities=7% Similarity=-0.058 Sum_probs=39.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
+...|||.+|-|.|..+.+|.... .+|++||+.|..++.|++-.+
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G--~~V~gvD~S~~ai~~a~~~~~ 88 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRG--HSVVGVEISELGIQEFFTEQN 88 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhh
Confidence 445799999999999999999864 689999999999999987654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=94.15 E-value=0.041 Score=52.79 Aligned_cols=104 Identities=12% Similarity=0.147 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhccc-cCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhh-----cC---
Q 006149 516 SSYHMGIISGFTLISSYLESVAS-VGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY-----FG--- 586 (659)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~-~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~-----Fg--- 586 (659)
-.|+++|...-......+..... -+...+||=||+|.|.+..-|.+.+|+++.+++|+ |.|++.+... .+
T Consensus 55 ~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~ri~~~~gd~ 133 (244)
T d1fp1d2 55 QIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDM 133 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCCCCCeEEecCCc
Confidence 34778886533332222222112 24557899999999999999999999999999998 6666543221 00
Q ss_pred CCCCCCeeEE--ecc-------cchhHHHHHHHhhccCCCCcEEEe
Q 006149 587 FTQDKSLKVF--NHL-------FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 587 l~~d~rl~vf--~~l-------~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+.+.|.-|++ .++ .+....+.++++| +|+|.+.+
T Consensus 134 ~~~~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL---~pgg~llI 176 (244)
T d1fp1d2 134 FASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKVII 176 (244)
T ss_dssp TTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHE---EEEEEEEE
T ss_pred ccccccceEEEEehhhhhCCHHHHHHHHHHHHHHc---CCCcEEEE
Confidence 0111112433 222 2556778889999 99995443
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.08 E-value=0.095 Score=52.30 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=65.0
Q ss_pred CCCCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhcC----------CCC-CCCeeE------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFG----------FTQ-DKSLKV------------ 595 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~Fg----------l~~-d~rl~v------------ 595 (659)
....+||=+|.|.|+++.+|.+. .|+-+|..+|++++.+++|++-|. +.. .+++++
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~ 176 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 176 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc
Confidence 34579999999999999999876 578899999999999999997541 000 112211
Q ss_pred ----Eeccc-----chhHHHHHHHhhccCCCCcEEEe--cCchHHHHHHHhh
Q 006149 596 ----FNHLF-----CLQLEEDVNLVLFGLSSESCIKD--NSFPEAAVQLGKL 636 (659)
Q Consensus 596 ----f~~l~-----~~~f~~~~~~~Lf~~~~~g~~~~--n~~~~~~~~l~~~ 636 (659)
|+.++ -.+....+.++| +|+|.+++ -+..+....++.|
T Consensus 177 ~~~~fD~V~LD~p~P~~~l~~~~~~L---KpGG~lv~~~P~i~Qv~~~~~~l 225 (324)
T d2b25a1 177 KSLTFDAVALDMLNPHVTLPVFYPHL---KHGGVCAVYVVNITQVIELLDGI 225 (324)
T ss_dssp ----EEEEEECSSSTTTTHHHHGGGE---EEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCcceEeecCcCHHHHHHHHHHhc---cCCCEEEEEeCCHHHHHHHHHHH
Confidence 12221 235778899999 99998886 3344444444444
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.95 E-value=0.03 Score=53.18 Aligned_cols=80 Identities=11% Similarity=0.095 Sum_probs=59.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhcCCC-------CCC-----------Cee-EEecc-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT-------QDK-----------SLK-VFNHL- 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~Fgl~-------~d~-----------rl~-vf~~l- 599 (659)
...+||=||.|.|+++..|.+.. |.-+|.+||++|.+++.|++-..-. .|. .+| +|..+
T Consensus 73 pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~ 152 (227)
T d1g8aa_ 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA 152 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEcc
Confidence 34699999999999999999875 7779999999999999998765211 111 113 23222
Q ss_pred ---cchhHHHHHHHhhccCCCCcEEEe
Q 006149 600 ---FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 600 ---~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
....+...+++.| +++|.++.
T Consensus 153 ~~~~~~~~l~~~~~~L---kpgG~lvi 176 (227)
T d1g8aa_ 153 QPTQAKILIDNAEVYL---KRGGYGMI 176 (227)
T ss_dssp STTHHHHHHHHHHHHE---EEEEEEEE
T ss_pred ccchHHHHHHHHHHhc---ccCCeEEE
Confidence 2455788889999 99997765
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.11 Score=46.52 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=61.3
Q ss_pred CCCCCeEEEECC--CcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCc
Q 006149 66 SSPPPQILVPGC--GNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDET 134 (659)
Q Consensus 66 ~~~~~~ILDiGC--G~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~s 134 (659)
.+++.+||..|+ |.|..+..+++. |. +|++++-++.-.+.+++ . +.. .+ .|..+.. .....
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~-~---Ga~-~v--i~~~~~~~~~~i~~~t~~~g 97 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ-N---GAH-EV--FNHREVNYIDKIKKYVGEKG 97 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-T---TCS-EE--EETTSTTHHHHHHHHHCTTC
T ss_pred CCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc-c---Ccc-cc--cccccccHHHHhhhhhccCC
Confidence 368899999997 456677777776 76 89999988876665532 2 211 11 2333322 23467
Q ss_pred ccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 135 FDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
||+|++... ...++...+.|+|+|+++.+.
T Consensus 98 ~d~v~d~~g--------------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 98 IDIIIEMLA--------------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEEEEESCH--------------HHHHHHHHHHEEEEEEEEECC
T ss_pred ceEEeeccc--------------HHHHHHHHhccCCCCEEEEEe
Confidence 999996421 256788889999999999874
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.70 E-value=0.13 Score=45.92 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=61.8
Q ss_pred CCCCeEEEECCCcchHH-HHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-------CCCCcccE
Q 006149 67 SPPPQILVPGCGNSRLS-EHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------FMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s-~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------~~~~sFDv 137 (659)
+++++||-+|||...+. ..+++. |...|+++|.++.-++.+++. +. ..++ |-.+.+ .....+|+
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga-~~~i--~~~~~~~~~~~~~~~~~g~d~ 103 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA-DHVV--DARRDPVKQVMELTRGRGVNV 103 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC-SEEE--ETTSCHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc-ceee--cCcccHHHHHHHhhCCCCceE
Confidence 57899999999875544 555554 777999999999766655332 11 1222 222211 12346899
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|++.-. . ...++...+.|++||+++++.+.
T Consensus 104 vid~~g-----~--------~~~~~~a~~~l~~~G~iv~~G~~ 133 (172)
T d1h2ba2 104 AMDFVG-----S--------QATVDYTPYLLGRMGRLIIVGYG 133 (172)
T ss_dssp EEESSC-----C--------HHHHHHGGGGEEEEEEEEECCCS
T ss_pred EEEecC-----c--------chHHHHHHHHHhCCCEEEEEeCc
Confidence 885321 1 25689999999999999987653
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=93.69 E-value=0.059 Score=52.58 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=53.3
Q ss_pred ceecCCccc-hHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhh
Q 006149 507 LKVYHGYLA-SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 507 ~~~d~~~L~-~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~ 584 (659)
+.|+++.|. =+.++.++.. ++.. ....+.+||=||-|.|+++-.+.+.+|+++|++|||++.-+++|++=
T Consensus 81 ~~v~~~VlIPRpeTE~lv~~-~l~~-------~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~N 151 (274)
T d2b3ta1 81 LFVSPATLIPRPDTECLVEQ-ALAR-------LPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRN 151 (274)
T ss_dssp EECCTTSCCCCTTHHHHHHH-HHHH-------SCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHH
T ss_pred EEEeccccccccchhhhhhh-Hhhh-------hcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHH
Confidence 456776664 3455555542 2211 12456789999999999999999999999999999999999999865
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.57 E-value=0.099 Score=52.00 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=54.5
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC---------------CCCCeeEE------e
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT---------------QDKSLKVF------N 597 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~---------------~d~rl~vf------~ 597 (659)
.++||-||.|.|.|+.++.+.... +|.+||.++ +++.|++.. ++. ++++.|++ .
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~-~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAK-HVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCS-EEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCC-EEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 368999999999999999887654 899999998 456666543 221 12344544 1
Q ss_pred ccc----chhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 HLF----CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l~----~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
++. -..+....++.| +|+|++..+.
T Consensus 117 ~~~~e~~~~~~~~a~~r~L---kpgG~iiP~~ 145 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYL---VEGGLIFPDK 145 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHE---EEEEEEESCE
T ss_pred eeccchhHHHHHHHHHhcc---CCCeEEEeee
Confidence 222 233555667889 9999987654
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.037 Score=53.33 Aligned_cols=46 Identities=22% Similarity=0.163 Sum_probs=42.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
....++|=||-|.|+++-.|.+.+|+.++++||||+..+++|++=.
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~ 105 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNV 105 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHH
Confidence 4557999999999999999999999999999999999999999764
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.34 Score=48.07 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=47.4
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh
Q 006149 512 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 512 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~ 583 (659)
+.+.......|+.-+.+ .....||=||-|.|.+...+...++..++.+||++|..+++|++
T Consensus 133 ~e~~~~~~~~~~~~~~l-----------~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~ 193 (328)
T d1nw3a_ 133 GETSFDLVAQMIDEIKM-----------TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAET 193 (328)
T ss_dssp CCCCHHHHHHHHHHSCC-----------CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC-----------CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence 34555566666643222 33458999999999999999998888789999999999999975
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.88 E-value=0.29 Score=50.09 Aligned_cols=61 Identities=15% Similarity=0.004 Sum_probs=50.4
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh
Q 006149 512 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 512 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~ 583 (659)
+.|..+....|+.-+-+ ....++|=||-|.|.+...+...++..++.+||+.|.++++|++
T Consensus 198 GEl~~~~i~~Il~~l~L-----------kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~ 258 (406)
T d1u2za_ 198 GELLPNFLSDVYQQCQL-----------KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTIL 258 (406)
T ss_dssp CCBCHHHHHHHHHHTTC-----------CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCC-----------CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 66777777777764444 23358999999999999999999887799999999999999985
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=92.87 E-value=0.12 Score=52.18 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=67.5
Q ss_pred CCeEEEECCCcchHHHHHHHc------------C-----CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEE---EEeecC
Q 006149 69 PPQILVPGCGNSRLSEHLYDA------------G-----FHGITNVDFSKVVISDMLRRNVRDR--SDMRW---RVMDMT 126 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~------------g-----~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~---~~~D~~ 126 (659)
.-+|.|+||.+|..+..+... + .-+|.--|.-..-...+.+...... ..--| +-+++.
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 368999999999988544321 0 0134444443322222222111111 11122 233444
Q ss_pred CCCCCCCcccEEEecccccccCCccc---------------c-----------hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 127 SMQFMDETFDVILDKGGLDALMEPEL---------------G-----------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 127 ~l~~~~~sFDvVi~~g~l~~l~~~~~---------------~-----------~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.=-||+++.+++++..++||+..-.. . ..++..+|+.=.+-|+|||+++++.++
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 33488999999999999999753110 0 123677888888889999999998876
Q ss_pred Cc
Q 006149 181 ES 182 (659)
Q Consensus 181 ~~ 182 (659)
.+
T Consensus 212 r~ 213 (359)
T d1m6ex_ 212 RR 213 (359)
T ss_dssp CS
T ss_pred cC
Confidence 43
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=92.53 E-value=0.092 Score=51.09 Aligned_cols=59 Identities=8% Similarity=0.009 Sum_probs=48.4
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR 113 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~ 113 (659)
...+...+.+... .+++.|||.-||+|..+......|- +.+|+|+++..++.+.+|...
T Consensus 236 P~~L~~rlI~~~s----~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 236 PAKLPEFFIRMLT----EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CTHHHHHHHHHHC----CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred chHHHHHhhhhcc----cCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence 3456666666665 4889999999999999998888885 999999999999988777643
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=92.49 E-value=0.069 Score=50.94 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=53.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC--------CCCCCeeEE--ec---c----cchh
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF--------TQDKSLKVF--NH---L----FCLQ 603 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl--------~~d~rl~vf--~~---l----~~~~ 603 (659)
...+||=||+|.|.+..-|.+.+|+++++++|+-+ |++.++..-.. .+-|.-+++ .+ . ....
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~ 159 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLK 159 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHH
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHH
Confidence 35789999999999999999999999999999954 55554433110 011111222 11 1 2556
Q ss_pred HHHHHHHhhccCCCCcEEE
Q 006149 604 LEEDVNLVLFGLSSESCIK 622 (659)
Q Consensus 604 f~~~~~~~Lf~~~~~g~~~ 622 (659)
..+.++++| +|+|-+.
T Consensus 160 iL~~~~~al---~pgg~~l 175 (243)
T d1kyza2 160 FLKNCYEAL---PDNGKVI 175 (243)
T ss_dssp HHHHHHHHC---CSSSCEE
T ss_pred HHHHHHHhc---CCCceEE
Confidence 788899999 9999443
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=92.46 E-value=0.14 Score=48.13 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=46.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhh
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV 112 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~ 112 (659)
..+...+.+... .+++.|||.-||+|..+....+.|- +.+|+|+++..++.+++|..
T Consensus 199 ~~L~~~lI~~~s----~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRASS----NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHHC----CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhC----CCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 345555666665 3789999999999999988888875 99999999999999888763
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.44 E-value=0.028 Score=53.49 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=37.0
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
....+||=||.|.|.++.++..... .+|++||+++.+++.|+++.
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~ 94 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWL 94 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHH
Confidence 3456899999999988877765543 38999999999999999874
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=92.40 E-value=0.14 Score=46.73 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=54.3
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhh---c------CCC-CCCCeeEE------eccc-chhHH
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY---F------GFT-QDKSLKVF------NHLF-CLQLE 605 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~---F------gl~-~d~rl~vf------~~l~-~~~f~ 605 (659)
.+||=||.|.|.+...+. ++++||++|.+++.|++- | .++ ++...|+. +|+- -..+.
T Consensus 38 ~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~~l 111 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERAL 111 (208)
T ss_dssp SCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHH
T ss_pred CeEEEECCCCcccccccc------eEEEEeCChhhcccccccccccccccccccccccccccccccccccccccccccch
Confidence 489999999999888774 468999999999999973 1 111 12233433 4553 45678
Q ss_pred HHHHHhhccCCCCcEEEecC
Q 006149 606 EDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 606 ~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..++++| +|+|.+....
T Consensus 112 ~~~~~~L---~pgG~l~i~~ 128 (208)
T d1vlma_ 112 KEAYRIL---KKGGYLIVGI 128 (208)
T ss_dssp HHHHHHE---EEEEEEEEEE
T ss_pred hhhhhcC---CCCceEEEEe
Confidence 8999999 9999776644
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=92.33 E-value=0.12 Score=49.74 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=68.1
Q ss_pred ceecCCc----cchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHH
Q 006149 507 LKVYHGY----LASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAE 582 (659)
Q Consensus 507 ~~~d~~~----L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~ 582 (659)
+.+||+. =.++-++.|+..+.-. .....+||=+|-|.|.++..+.+.. .++++||+||..++.|+
T Consensus 91 i~i~pg~aFGTG~H~TT~l~l~~l~~~---------~~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~ 159 (254)
T d2nxca1 91 LVIEPGMAFGTGHHETTRLALKALARH---------LRPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAE 159 (254)
T ss_dssp EECCCC-----CCSHHHHHHHHHHHHH---------CCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHH
T ss_pred EEEccccccCccccchhhHHHHHHHhh---------cCccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHH
Confidence 5566632 2345556665543221 1234799999999999999888754 58999999999999999
Q ss_pred hhc---CCCC------------CCCeeEE-eccc---chhHHHHHHHhhccCCCCcEEEecC
Q 006149 583 DYF---GFTQ------------DKSLKVF-NHLF---CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 583 ~~F---gl~~------------d~rl~vf-~~l~---~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+-. |+.. +...|+. ..+. -.++.+.+.++| +|+|.++...
T Consensus 160 ~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~~l~~l~~~~~~~L---kpGG~lilSg 218 (254)
T d2nxca1 160 ANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREAL---VPGGRALLTG 218 (254)
T ss_dssp HHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHHHHHHHHHHHHHHE---EEEEEEEEEE
T ss_pred HHHHHcCCceeEEeccccccccccccchhhhccccccHHHHHHHHHHhc---CCCcEEEEEe
Confidence 654 3321 1111222 2221 245667888999 9999887643
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=92.26 E-value=0.067 Score=52.06 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=37.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~ 583 (659)
.+.+++-+|.|+|++...+.+ +|+.+|++|||+|.-+++|++
T Consensus 110 ~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~ 151 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARK 151 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHH
T ss_pred cccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHH
Confidence 356899999999999999875 689999999999999999996
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.21 E-value=0.12 Score=48.51 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=46.2
Q ss_pred CccchHHHHHHH-HHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 512 GYLASSYHMGII-SGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 512 ~~L~~~Y~~~m~-~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.++..+|..+++ ..+.+ ....+||.||.|.|-++-.|.+... .++++||+|+.+++.|++-+
T Consensus 59 ~~is~P~~~a~ml~~L~l-----------~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l 121 (215)
T d1jg1a_ 59 QTVSAPHMVAIMLEIANL-----------KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNL 121 (215)
T ss_dssp CEECCHHHHHHHHHHHTC-----------CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHhhcc-----------CccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHH
Confidence 456677765544 22222 3346999999999999988887653 57999999999999999754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.10 E-value=0.26 Score=43.43 Aligned_cols=92 Identities=12% Similarity=0.206 Sum_probs=57.6
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-------CCCCcccE
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------FMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------~~~~sFDv 137 (659)
+++++||-+|||. |.++..+++. | .+|+++|.++.-++.+++. +.. .++ |..+.+ ...+.+|+
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~----Ga~-~~i--~~~~~~~~~~~~~~~~g~~~~ 97 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKL----GAS-LTV--NARQEDPVEAIQRDIGGAHGV 97 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT----TCS-EEE--ETTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhcc----Ccc-ccc--cccchhHHHHHHHhhcCCccc
Confidence 6789999999986 4445666665 6 4999999999877755332 211 222 222211 11233344
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|.+.+. ...++...+.|++||+++++...
T Consensus 98 i~~~~~--------------~~~~~~~~~~l~~~G~iv~~G~~ 126 (166)
T d1llua2 98 LVTAVS--------------NSAFGQAIGMARRGGTIALVGLP 126 (166)
T ss_dssp EECCSC--------------HHHHHHHHTTEEEEEEEEECCCC
T ss_pred cccccc--------------chHHHHHHHHhcCCcEEEEEEec
Confidence 443221 25678889999999999987654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.10 E-value=0.39 Score=45.71 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=58.4
Q ss_pred CCCeEEEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC----------CCC
Q 006149 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ----------FMD 132 (659)
Q Consensus 68 ~~~~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~----------~~~ 132 (659)
++..+|..|++.|. .+..|++.|. +|+.+|.++..++++.+.....+ .++.++.+|+.+.. -.-
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 46799999999874 4577777898 99999999999988877665554 36788899998842 012
Q ss_pred CcccEEEecccccc
Q 006149 133 ETFDVILDKGGLDA 146 (659)
Q Consensus 133 ~sFDvVi~~g~l~~ 146 (659)
+..|+++.+.....
T Consensus 88 g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 88 SGVDICINNAGLAR 101 (257)
T ss_dssp CCCSEEEECCCCCC
T ss_pred CCCCEEEecccccC
Confidence 57899987655443
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.04 E-value=0.11 Score=46.21 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=59.9
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC---CCCCCcccEEEec
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM---QFMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l---~~~~~sFDvVi~~ 141 (659)
+++++||-+|||. |.++..+++. |. +++++|.++.-++.+++ . +.. .++ |..+. ......+|++++.
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~-l---Gad-~~i--~~~~~~~~~~~~~~~D~vid~ 100 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA-L---GAD-EVV--NSRNADEMAAHLKSFDFILNT 100 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH-H---TCS-EEE--ETTCHHHHHTTTTCEEEEEEC
T ss_pred CCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhc-c---CCc-EEE--ECchhhHHHHhcCCCceeeee
Confidence 6899999999986 5566677765 65 77889988876665433 2 111 122 22221 1223579998864
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
-. .+ ..++...+.|+++|+++++...
T Consensus 101 ~g-----~~--------~~~~~~~~~l~~~G~iv~~G~~ 126 (168)
T d1uufa2 101 VA-----AP--------HNLDDFTTLLKRDGTMTLVGAP 126 (168)
T ss_dssp CS-----SC--------CCHHHHHTTEEEEEEEEECCCC
T ss_pred ee-----cc--------hhHHHHHHHHhcCCEEEEeccC
Confidence 21 11 2377788999999999988653
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=91.88 E-value=0.18 Score=48.08 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=52.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCe--------------eEE--ecc----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSL--------------KVF--NHL---- 599 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl--------------~vf--~~l---- 599 (659)
....+||=||+|.|.+..-+.+.+|++++++.|+ |.|++.|. ..+|+ |++ .++
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw 151 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS------GSNNLTYVGGDMFTSIPNADAVLLKYILHNW 151 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------CBTTEEEEECCTTTCCCCCSEEEEESCGGGS
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc------ccCceEEEecCcccCCCCCcEEEEEeecccC
Confidence 3456899999999999999999999999999999 66665442 23444 333 221
Q ss_pred ---cchhHHHHHHHhhccCCCCc
Q 006149 600 ---FCLQLEEDVNLVLFGLSSES 619 (659)
Q Consensus 600 ---~~~~f~~~~~~~Lf~~~~~g 619 (659)
.+....+.|+.+| +++|
T Consensus 152 ~d~~~~~iL~~~~~al---~pgg 171 (244)
T d1fp2a2 152 TDKDCLRILKKCKEAV---TNDG 171 (244)
T ss_dssp CHHHHHHHHHHHHHHH---SGGG
T ss_pred ChHHHHHHHHHHHHHc---Cccc
Confidence 2456788899999 9873
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.48 Score=44.78 Aligned_cols=81 Identities=10% Similarity=0.100 Sum_probs=63.8
Q ss_pred CCCeEEEECCCcc---hHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCc
Q 006149 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G---~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~s 134 (659)
.+..+|--|++.| .++..|++.|. +|+.+|.++.-++...+.....+.++.++.+|+.+.. -..+.
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~ 84 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD 84 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 5678899999987 45677888898 9999999999988887777677788999999999863 12357
Q ss_pred ccEEEecccccccCC
Q 006149 135 FDVILDKGGLDALME 149 (659)
Q Consensus 135 FDvVi~~g~l~~l~~ 149 (659)
.|+++.+........
T Consensus 85 idilinnag~~~~~~ 99 (244)
T d1yb1a_ 85 VSILVNNAGVVYTSD 99 (244)
T ss_dssp CSEEEECCCCCCCCC
T ss_pred CceeEeecccccccc
Confidence 899987766655443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=91.67 E-value=0.13 Score=49.48 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=43.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
....||-||-|-|+|...|.... .++++||||+..++..++-|.. .+++.++
T Consensus 21 ~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~--~~~~~ii 72 (252)
T d1qyra_ 21 KGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFL--GPKLTIY 72 (252)
T ss_dssp TTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTT--GGGEEEE
T ss_pred CCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhh--ccchhHH
Confidence 34689999999999999999864 4899999999999988875542 4577777
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.44 E-value=0.23 Score=46.61 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=36.3
Q ss_pred CCeEEEEccCcchHHHHHHhhC------CCccEEEEecChhHHHHHHhh
Q 006149 542 SVKAVVIGLGAGLLPMFLHECM------PFVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~------p~~~i~~VEiDp~V~~vA~~~ 584 (659)
..+||.||-|.|-++..|.+.. +..+|+.||+|+.+++.|++.
T Consensus 81 g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~ 129 (223)
T d1r18a_ 81 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKAN 129 (223)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHH
T ss_pred CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHh
Confidence 4699999999998887777653 446899999999999999875
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=91.38 E-value=0.11 Score=48.00 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=38.0
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
.++||=+|-|.|.|...+....+. +|++||+|+..+++|++-..
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~-~V~~vDid~~a~~~ar~N~~ 92 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAE-SVTAFDIDPDAIETAKRNCG 92 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBS-EEEEEESCHHHHHHHHHHCT
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCC-cccccccCHHHHHHHHHccc
Confidence 479999999999998777766554 89999999999999999763
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.04 E-value=0.81 Score=40.06 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=70.1
Q ss_pred eEEEECCCc-c-hHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 71 QILVPGCGN-S-RLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 71 ~ILDiGCG~-G-~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
+|+-||||. | .++..|.+.|+ .+|+++|.++..++.+++.. .+.....+... ..+...|+|+..-..+
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~dlIila~p~~-- 73 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-----IIDEGTTSIAK--VEDFSPDFVMLSSPVR-- 73 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-----SCSEEESCGGG--GGGTCCSEEEECSCHH--
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh-----cchhhhhhhhh--hhccccccccccCCch--
Confidence 689999986 3 34556666665 58999999998888765432 11122222222 1234579888533222
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeCCC
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQK 206 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~ 206 (659)
....++.++.+.++++..++-+.-......+.+....... .+..|+|.+.
T Consensus 74 --------~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~-~i~~hPm~G~ 123 (171)
T d2g5ca2 74 --------TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKR-FVGGHPIAGT 123 (171)
T ss_dssp --------HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG-EECEEEECCC
T ss_pred --------hhhhhhhhhhccccccccccccccccHHHHHHHHHhhccc-cccccccccc
Confidence 2568899999999998766655554444444333333333 3445566544
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.89 E-value=0.14 Score=43.70 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=35.7
Q ss_pred CeEEEEccC--cchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC
Q 006149 543 VKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 587 (659)
Q Consensus 543 ~~vLiiGlG--gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl 587 (659)
.+|+|+|+| |-.+++.|.+.. ..+.+||.||+.++-+++.|+.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g--~~v~vid~d~~~~~~~~~~~~~ 45 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDKDICKKASAEIDA 45 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCcceecCChhhhhhhhhhhhh
Confidence 379999999 899999998764 5899999999998877666653
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.81 E-value=0.63 Score=44.00 Aligned_cols=78 Identities=10% Similarity=0.144 Sum_probs=58.9
Q ss_pred CCCeEEEECCCcc---hHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCc
Q 006149 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G---~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~s 134 (659)
.+..+|--|++.| ..+..|++.|. +|+.+|.++..++.+.+.....+.++.++.+|+++.. -.-+.
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 87 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN 87 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 4678888898776 34566666787 9999999999998887777666678999999998852 11267
Q ss_pred ccEEEecccccc
Q 006149 135 FDVILDKGGLDA 146 (659)
Q Consensus 135 FDvVi~~g~l~~ 146 (659)
.|+++.+.....
T Consensus 88 iDilvnnag~~~ 99 (251)
T d2c07a1 88 VDILVNNAGITR 99 (251)
T ss_dssp CCEEEECCCCCC
T ss_pred ceeeeecccccc
Confidence 999987665543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=90.63 E-value=0.12 Score=46.52 Aligned_cols=98 Identities=11% Similarity=0.092 Sum_probs=63.7
Q ss_pred CCCeEEEECCCcch-HHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSR-LSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~-~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|+-+|+|.-. .+...+.. |. +|+.+|.++..+++...... .++.+...+-..+.-.-...|+|+..-.+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~---~~~~~~~~~~~~l~~~~~~aDivI~aalip 106 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFG---SRVELLYSNSAEIETAVAEADLLIGAVLVP 106 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhc---ccceeehhhhhhHHHhhccCcEEEEeeecC
Confidence 57899999999854 45555554 64 99999999999987765542 345555544433321224689999654433
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi 176 (659)
.-..+. -+-+++.+.+|||.+++=
T Consensus 107 G~~aP~-------lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 107 GRRAPI-------LVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp TSSCCC-------CBCHHHHTTSCTTCEEEE
T ss_pred CcccCe-------eecHHHHhhcCCCcEEEE
Confidence 222222 234678889999987763
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.56 E-value=0.23 Score=45.44 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=40.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
...++=+++|+|+..+.+...+|+.++.++|+||.+++.|++-+
T Consensus 24 ~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l 67 (192)
T d1m6ya2 24 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKL 67 (192)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT
T ss_pred CCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhh
Confidence 35788899999999999999999999999999999999999866
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.44 E-value=0.36 Score=42.29 Aligned_cols=92 Identities=12% Similarity=0.152 Sum_probs=57.7
Q ss_pred CCCCeEEEECCCcchH-HHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-------CCCCcccE
Q 006149 67 SPPPQILVPGCGNSRL-SEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------FMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~-s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------~~~~sFDv 137 (659)
+++++||-.|||+-.+ +..+++. |. +|+++|.++.-++.+++ . +. ... .|-.+.. ...+.+|+
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~-~---Ga--~~~-~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE-L---GA--DLV-VNPLKEDAAKFMKEKVGGVHAA 97 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH-T---TC--SEE-ECTTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh-c---Cc--cee-cccccchhhhhcccccCCCceE
Confidence 5789999999988544 4555555 55 89999999987775533 2 11 111 2222111 11234455
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|++.+ . ...+....+.|+|||++++....
T Consensus 98 v~~~~------~--------~~~~~~a~~~l~~~G~i~~~g~~ 126 (168)
T d1rjwa2 98 VVTAV------S--------KPAFQSAYNSIRRGGACVLVGLP 126 (168)
T ss_dssp EESSC------C--------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred EeecC------C--------HHHHHHHHHHhccCCceEecccc
Confidence 44321 1 26688999999999999988654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.29 E-value=0.5 Score=45.19 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=75.3
Q ss_pred CCeE-EEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------C--CCCc
Q 006149 69 PPQI-LVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------F--MDET 134 (659)
Q Consensus 69 ~~~I-LDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~--~~~s 134 (659)
+.+| |.=|++.|. .+..|++.+..+|+.++.++.-++.+.+.....+.++.++.+|+.+.. . .-+.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~ 81 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 81 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 3455 666766663 345666653349999999999988888877777788999999998863 1 1257
Q ss_pred ccEEEecccccccCCcccc-hHH-----------HHHHHHHHHhccccCeEEEEEEc
Q 006149 135 FDVILDKGGLDALMEPELG-HKL-----------GNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 135 FDvVi~~g~l~~l~~~~~~-~~~-----------~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.|+++.+..+.......+. ... .-.+.+.+...|+++|+++.++.
T Consensus 82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS 138 (275)
T d1wmaa1 82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 138 (275)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 9999987665433222111 111 33566777888899999877764
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.19 E-value=0.19 Score=46.33 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=36.8
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.++||=+|.|.|++...+....+ .+|++|||||..+++|++-.
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~ 89 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENL 89 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHT
T ss_pred CCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHH
Confidence 46899999999999988776544 49999999999999999754
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=90.14 E-value=0.71 Score=40.81 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=62.4
Q ss_pred CCCCeEEEECCCc--chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC--------CCCcc
Q 006149 67 SPPPQILVPGCGN--SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF--------MDETF 135 (659)
Q Consensus 67 ~~~~~ILDiGCG~--G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~--------~~~sF 135 (659)
+++++||-.|+|. |..+..+++. |. +|+++|.|+.-.+.+++.- .. ...|..+.++ ....+
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lG---a~----~vi~~~~~d~~~~v~~~t~g~g~ 98 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAG---AW----QVINYREEDLVERLKEITGGKKV 98 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHT---CS----EEEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcC---Ce----EEEECCCCCHHHHHHHHhCCCCe
Confidence 6789999997764 5677777776 65 9999999998887664332 11 1223333221 24578
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+|++...- ..+......|+++|++++....
T Consensus 99 d~v~d~~g~--------------~~~~~~~~~l~~~G~~v~~g~~ 129 (179)
T d1qora2 99 RVVYDSVGR--------------DTWERSLDCLQRRGLMVSFGNS 129 (179)
T ss_dssp EEEEECSCG--------------GGHHHHHHTEEEEEEEEECCCT
T ss_pred EEEEeCccH--------------HHHHHHHHHHhcCCeeeecccc
Confidence 998864321 3377888999999998876543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=90.12 E-value=1.1 Score=42.43 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=61.0
Q ss_pred CCCeEEEECCCcc---hHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----------CCCC
Q 006149 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------FMDE 133 (659)
Q Consensus 68 ~~~~ILDiGCG~G---~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----------~~~~ 133 (659)
.+.++|-.|+..| ..+..|++.|. +|+.+|.++.-++.+.+.....+..+.++.+|+.+.. .-++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g 83 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG 83 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 5789999999887 45677788898 9999999998888887777777788899999998753 1135
Q ss_pred cccEEEecccccc
Q 006149 134 TFDVILDKGGLDA 146 (659)
Q Consensus 134 sFDvVi~~g~l~~ 146 (659)
..|+++.+.....
T Consensus 84 ~idilinnag~~~ 96 (258)
T d1ae1a_ 84 KLNILVNNAGVVI 96 (258)
T ss_dssp CCCEEEECCCCCC
T ss_pred CcEEEeccccccc
Confidence 6888886554443
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.09 E-value=0.26 Score=46.85 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=47.2
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR 113 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~ 113 (659)
..+...+.+... .+++.|||.-||+|..+......|- +.+|+|+++..++.+.+|...
T Consensus 194 ~~L~~~~I~~~s----~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 194 AAVIERLVRALS----HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp HHHHHHHHHHHS----CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhc----CCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 344555555554 4789999999999999988888875 999999999999999888754
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.93 E-value=0.26 Score=47.91 Aligned_cols=53 Identities=23% Similarity=0.217 Sum_probs=43.6
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-CCCCeeEE
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVF 596 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-~d~rl~vf 596 (659)
...||-||-|-|+|.+.|.+.. .++++||+|+..++.-++.|.-. ...+++++
T Consensus 22 ~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i 75 (278)
T d1zq9a1 22 TDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVL 75 (278)
T ss_dssp TCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEE
T ss_pred CCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhccccchhhh
Confidence 3589999999999999999885 48999999999999999887532 23466655
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=89.55 E-value=1.3 Score=41.97 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=60.2
Q ss_pred CCCeEEEECCCcc---hHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------C---CCC
Q 006149 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------F---MDE 133 (659)
Q Consensus 68 ~~~~ILDiGCG~G---~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~---~~~ 133 (659)
.+.++|.-|++.| ..+..|++.|. +|+.+|.++.-++.+.+.....+.++.++.+|+.+.. . -.+
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~ 85 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG 85 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 4779999999877 35677788887 8999999999998887777666778889999998742 0 124
Q ss_pred cccEEEecccccc
Q 006149 134 TFDVILDKGGLDA 146 (659)
Q Consensus 134 sFDvVi~~g~l~~ 146 (659)
..|+++.+.....
T Consensus 86 ~idilvnnAG~~~ 98 (259)
T d2ae2a_ 86 KLNILVNNAGIVI 98 (259)
T ss_dssp CCCEEEECCCCCC
T ss_pred CceEEEECCceec
Confidence 6899997755443
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.42 E-value=0.83 Score=43.34 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=59.0
Q ss_pred CCCeEEEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----C-----CCCc
Q 006149 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----F-----MDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----~-----~~~s 134 (659)
.+.++|.-|.+.|. .+..|++.|. +|+.+|.++..++.+.+.....+.++.++.+|+.+.. + .-+.
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK 82 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 56799999988773 5677888897 8999999999998887777666778999999998752 0 1257
Q ss_pred ccEEEeccc
Q 006149 135 FDVILDKGG 143 (659)
Q Consensus 135 FDvVi~~g~ 143 (659)
.|+++.+..
T Consensus 83 iDilVnnaG 91 (260)
T d1zema1 83 IDFLFNNAG 91 (260)
T ss_dssp CCEEEECCC
T ss_pred CCeehhhhc
Confidence 899987644
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.10 E-value=0.98 Score=42.95 Aligned_cols=110 Identities=13% Similarity=0.133 Sum_probs=75.1
Q ss_pred CCCeEEEECCCcc---hHHHHHHHcCCCeEEEEcCC-HHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCC
Q 006149 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFS-KVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDE 133 (659)
Q Consensus 68 ~~~~ILDiGCG~G---~~s~~La~~g~~~VtgvD~S-~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~ 133 (659)
.+.++|--|++.| ..+..|++.|. +|+.+|.+ +..++...+.....+.++.++++|+.+.. -..+
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 95 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG 95 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence 4689999999888 46778888897 89999876 56666666666666778999999998842 0125
Q ss_pred cccEEEecccccccCCcccc-hHH-----------HHHHHHHHHhccccCeEEEEEE
Q 006149 134 TFDVILDKGGLDALMEPELG-HKL-----------GNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~-~~~-----------~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
..|+++.+..........+. ... .-.+.+.+.+.|+.+|..+++.
T Consensus 96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 78998876655433322211 111 4445677778888888777665
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=88.86 E-value=0.78 Score=43.42 Aligned_cols=111 Identities=10% Similarity=0.062 Sum_probs=75.0
Q ss_pred CCCCeEEEECCCcc---hHHHHHHHcCCCeEEE-EcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCC
Q 006149 67 SPPPQILVPGCGNS---RLSEHLYDAGFHGITN-VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMD 132 (659)
Q Consensus 67 ~~~~~ILDiGCG~G---~~s~~La~~g~~~Vtg-vD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~ 132 (659)
-.+.++|-.|.+.| ..+..|++.|+ +|+. .+-++..++.+.+.....+.++.++.+|+.+.. ..-
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 82 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence 35789999998777 66778888898 6765 567777777777777667778999999998742 122
Q ss_pred CcccEEEecccccccCCcccch-H-----------HHHHHHHHHHhccccCeEEEEEE
Q 006149 133 ETFDVILDKGGLDALMEPELGH-K-----------LGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~-~-----------~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+..|+++.+....+..+..+.. . ..-.+.+.+.+.|+.+|..+++.
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence 5789999776665443322111 1 13445566667777777666554
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.72 E-value=0.94 Score=40.06 Aligned_cols=99 Identities=19% Similarity=0.151 Sum_probs=60.7
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccC-cc-hHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-
Q 006149 512 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLG-AG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT- 588 (659)
Q Consensus 512 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlG-gG-~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~- 588 (659)
..|.|.++.+.-+.+-.. ....-.+|||+|.| .| ....+++... ..+|.+++.++.=.+.|+++ |..
T Consensus 7 apl~ca~~Ta~~a~~~~~--------~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~~-Ga~~ 76 (174)
T d1f8fa2 7 GPLGCGIQTGAGACINAL--------KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQL-GATH 76 (174)
T ss_dssp GGGGTHHHHHHHHHHTTT--------CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHH-TCSE
T ss_pred HHHhhHHHHHHHHHHHhh--------CCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHHc-CCeE
Confidence 346677765554322111 11334689999998 33 3444444444 44889999999999999874 543
Q ss_pred ----CCCC------------ee-EEecccchhHHHHHHHhhccCCCCcEEEe
Q 006149 589 ----QDKS------------LK-VFNHLFCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 589 ----~d~r------------l~-vf~~l~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++. .| +|+..-..+..+.+-+++ +++|.++.
T Consensus 77 ~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~---~~~G~i~~ 125 (174)
T d1f8fa2 77 VINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDAL---GILGKIAV 125 (174)
T ss_dssp EEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTE---EEEEEEEE
T ss_pred EEeCCCcCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcc---cCceEEEE
Confidence 1111 22 334455667778888888 89886654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=88.43 E-value=1.7 Score=38.44 Aligned_cols=97 Identities=18% Similarity=0.095 Sum_probs=59.2
Q ss_pred CCCCCeEEEECCCcchHH-HHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-------CCCCCccc
Q 006149 66 SSPPPQILVPGCGNSRLS-EHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-------QFMDETFD 136 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s-~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l-------~~~~~sFD 136 (659)
.+++++||.+|||...+. ..+++. |..+|+++|.++.-++.+++. +. -.++...-.+. ...++.+|
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga-~~~i~~~~~d~~~~~~~~~~~~~G~d 99 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GA-TECLNPKDYDKPIYEVICEKTNGGVD 99 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TC-SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CC-cEEEcCCCchhHHHHHHHHhcCCCCc
Confidence 478999999999975544 444544 777999999999877766432 11 12221111110 02235689
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccc-cCeEEEEEEcC
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLK-SGGKFVCLTLA 180 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLk-pGG~lvi~~~~ 180 (659)
+|++.-. . ...+......++ ++|+++++-+.
T Consensus 100 ~vid~~g-----~--------~~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 100 YAVECAG-----R--------IETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp EEEECSC-----C--------HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred EEEEcCC-----C--------chHHHHHHHHHHHhcCceEEEEEe
Confidence 9885321 1 145666666665 46999988764
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=88.43 E-value=0.81 Score=45.84 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=53.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc--------CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA--------GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVIL 139 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~--------g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi 139 (659)
+...|+|+|+|+|.++..+... -..+++-++.|+...+..+++. ....++.|+ .|+..++ ...-+|+
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l-~~~~~i~w~-~~~~~~~---~~~g~ii 153 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL-AGIRNIHWH-DSFEDVP---EGPAVIL 153 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS-TTCSSEEEE-SSGGGSC---CSSEEEE
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh-cccccceec-cChhhcc---cCCeEEE
Confidence 4568999999999998777553 1235899999998776554443 333456553 3444443 2236899
Q ss_pred ecccccccCCc
Q 006149 140 DKGGLDALMEP 150 (659)
Q Consensus 140 ~~g~l~~l~~~ 150 (659)
++..+|+++..
T Consensus 154 aNE~fDAlPv~ 164 (365)
T d1zkda1 154 ANEYFDVLPIH 164 (365)
T ss_dssp EESSGGGSCCE
T ss_pred ecccCccccce
Confidence 99999998753
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.06 E-value=1.2 Score=42.29 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=59.8
Q ss_pred CCCeEEEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------C-C--CC
Q 006149 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------F-M--DE 133 (659)
Q Consensus 68 ~~~~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~-~--~~ 133 (659)
.+.++|.-|++.|. .+..|++.|. +|+.+|.++.-++++.+.......++.++.+|+.+.. . . .+
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g 85 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG 85 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence 57899999998874 5677788897 9999999999888887777666778999999998752 0 0 25
Q ss_pred cccEEEeccccc
Q 006149 134 TFDVILDKGGLD 145 (659)
Q Consensus 134 sFDvVi~~g~l~ 145 (659)
..|+++.+....
T Consensus 86 ~idilvnnAG~~ 97 (259)
T d1xq1a_ 86 KLDILINNLGAI 97 (259)
T ss_dssp CCSEEEEECCC-
T ss_pred Cccccccccccc
Confidence 789999765543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.80 E-value=0.91 Score=40.42 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=57.7
Q ss_pred CCCCCeEEEECCCcchHH-HHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE-eecCCC------CCCCCccc
Q 006149 66 SSPPPQILVPGCGNSRLS-EHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV-MDMTSM------QFMDETFD 136 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s-~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~-~D~~~l------~~~~~sFD 136 (659)
.+++++||-+|||...+. ..+++. |..+|+++|.++.-++.+++.-+ . .++. -|-... ......+|
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA----~-~~in~~~~~~~~~~~~~~~~g~G~d 101 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA----T-ECISPKDSTKPISEVLSEMTGNNVG 101 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC----S-EEECGGGCSSCHHHHHHHHHTSCCC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC----c-EEECccccchHHHHHHHHhccccce
Confidence 368999999999975554 444444 76799999999988886654432 1 1111 111110 01235689
Q ss_pred EEEecccccccCCcccchHHHHHHHHH-HHhccccCeEEEEEEcC
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSE-VKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~e-i~rvLkpGG~lvi~~~~ 180 (659)
+|+..-.-. ..+.. +..+++++|+++++...
T Consensus 102 ~vi~~~g~~-------------~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 102 YTFEVIGHL-------------ETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp EEEECSCCH-------------HHHHHHHTTSCTTTCEEEECSCC
T ss_pred EEEEeCCch-------------HHHHHHHHHhhcCCeEEEEEEcc
Confidence 888532111 33444 44455666999988754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.75 E-value=1.5 Score=38.39 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=52.7
Q ss_pred CCeEEEEccC-cchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-----CCCC---------------ee-EEecc
Q 006149 542 SVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----QDKS---------------LK-VFNHL 599 (659)
Q Consensus 542 ~~~vLiiGlG-gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-----~d~r---------------l~-vf~~l 599 (659)
..+|||+|.| .|.+.-.+.+...-.+|.++|.++.=.++|+++ |.. .++. .| +|+-.
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~-Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI-GADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 105 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh-CCcccccccccccccccccccccCCCCceEEEecc
Confidence 3589999999 444454555555444899999999999999885 432 1111 12 34555
Q ss_pred cchhHHHHHHHhhccCCCCcEEEe
Q 006149 600 FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
-.....+..-..+ +++|.++.
T Consensus 106 G~~~~~~~a~~~~---~~gG~iv~ 126 (171)
T d1pl8a2 106 GAEASIQAGIYAT---RSGGTLVL 126 (171)
T ss_dssp CCHHHHHHHHHHS---CTTCEEEE
T ss_pred CCchhHHHHHHHh---cCCCEEEE
Confidence 5666677777777 99997765
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=87.49 E-value=1.6 Score=42.28 Aligned_cols=105 Identities=16% Similarity=0.087 Sum_probs=70.2
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC----CCCcEEEEeecCCC--------CCCCCccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSM--------QFMDETFD 136 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~----~~~i~~~~~D~~~l--------~~~~~sFD 136 (659)
...|+.+|||-=.-...|...+...++-||. +.+++.=++...+. ..+...+..|+.+. .|..+.--
T Consensus 90 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt 168 (297)
T d2uyoa1 90 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 168 (297)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence 4567779999877666653223346788885 55665333333322 13457777887652 13334556
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
++++.|++.++...+ ..++|+.+.....||+.+++...
T Consensus 169 l~i~EGvl~YL~~~~-----~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 169 AWLAEGLLMYLPATA-----QDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp EEEECSCGGGSCHHH-----HHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEEEccccccCCHHH-----HHHHHHHHHHhCCCCCEEEEEec
Confidence 888999999986554 78999999999999999887644
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=87.43 E-value=1.2 Score=38.70 Aligned_cols=90 Identities=17% Similarity=0.094 Sum_probs=57.9
Q ss_pred eEEEECCCc--chHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccC
Q 006149 71 QILVPGCGN--SRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148 (659)
Q Consensus 71 ~ILDiGCG~--G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~ 148 (659)
+|.-||||. +.++..|.+.|+ +|++.|.++..++.+++... +.....+... -...|+|+..-.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~-----~~~~~~~~~~----~~~~DiIilavp----- 66 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL-----VDEAGQDLSL----LQTAKIIFLCTP----- 66 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS-----CSEEESCGGG----GTTCSEEEECSC-----
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhc-----cceeeeeccc----ccccccccccCc-----
Confidence 688899983 456677777788 99999999988776644221 1111122222 245798884221
Q ss_pred CcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 149 ~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
. ...+.+++++...|+++-.++-..-.
T Consensus 67 ~-----~~~~~vl~~l~~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 67 I-----QLILPTLEKLIPHLSPTAIVTDVASV 93 (165)
T ss_dssp H-----HHHHHHHHHHGGGSCTTCEEEECCSC
T ss_pred H-----hhhhhhhhhhhhhcccccceeecccc
Confidence 1 12678999999999998876555433
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.13 E-value=0.36 Score=46.29 Aligned_cols=79 Identities=10% Similarity=0.094 Sum_probs=59.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-CCCeeEE-------------ec------cc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVF-------------NH------LF 600 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-d~rl~vf-------------~~------l~ 600 (659)
...+||-+|.|.|.++..+..+. ..+|.+||++|.-++.|++-.-+.. ++++.++ ++ -.
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~~ 185 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVR 185 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCSS
T ss_pred CccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCCc
Confidence 34689999999999999888774 4699999999999999987663221 2334222 22 15
Q ss_pred chhHHHHHHHhhccCCCCcEEEe
Q 006149 601 CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 601 ~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+.+|.+..-++| +++|++..
T Consensus 186 ~~~~l~~a~~~l---~~gG~lh~ 205 (260)
T d2frna1 186 THEFIPKALSIA---KDGAIIHY 205 (260)
T ss_dssp GGGGHHHHHHHE---EEEEEEEE
T ss_pred hHHHHHHHHhhc---CCCCEEEE
Confidence 778888888888 99998744
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=87.02 E-value=0.042 Score=52.81 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=39.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 587 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl 587 (659)
...+||-||-|-|+|+..|.+.. .++++||+|+..++.+++-|+.
T Consensus 29 ~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~ 73 (245)
T d1yuba_ 29 ETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL 73 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTT
T ss_pred CCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhh
Confidence 34689999999999999999874 4899999999999999888753
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=86.96 E-value=0.2 Score=43.75 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=29.9
Q ss_pred CeEEEEccC--cchHHHHHHhhCCCccEEEEecChh
Q 006149 543 VKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLT 576 (659)
Q Consensus 543 ~~vLiiGlG--gG~l~~~l~~~~p~~~i~~VEiDp~ 576 (659)
+||+|||+| |=.++..|++..++.+|+++|-+|.
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~ 38 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence 799999999 6677889999999999999998773
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.79 E-value=0.72 Score=40.86 Aligned_cols=91 Identities=20% Similarity=0.195 Sum_probs=58.6
Q ss_pred CCCCCeEEEECC--CcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCc
Q 006149 66 SSPPPQILVPGC--GNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDET 134 (659)
Q Consensus 66 ~~~~~~ILDiGC--G~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~s 134 (659)
.+++++||-.|. |.|..+..+++. |. ++++++-++.-.+.++ +.+.. .. .|..+.+ .....
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~----~~Ga~-~v--i~~~~~~~~~~v~~~t~~~g 94 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS----RLGVE-YV--GDSRSVDFADEILELTDGYG 94 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH----TTCCS-EE--EETTCSTHHHHHHHHTTTCC
T ss_pred CCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccc----ccccc-cc--ccCCccCHHHHHHHHhCCCC
Confidence 367899999873 345667777776 66 8888887876555443 22222 11 2323322 23467
Q ss_pred ccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 135 FDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
||+|++.-. . ..++.+.+.|+++|+++.+.
T Consensus 95 ~d~v~d~~g-----~---------~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 95 VDVVLNSLA-----G---------EAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp EEEEEECCC-----T---------HHHHHHHHTEEEEEEEEECS
T ss_pred EEEEEeccc-----c---------hHHHHHHHHhcCCCEEEEEc
Confidence 999997432 1 45778889999999999874
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=86.30 E-value=0.33 Score=42.65 Aligned_cols=40 Identities=23% Similarity=0.117 Sum_probs=34.3
Q ss_pred CeEEEEccC--cchHHHHHHhhCCCccEEEEecChhHHHHHHhh
Q 006149 543 VKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 543 ~~vLiiGlG--gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~ 584 (659)
.||.|||+| |+++++.|.+.. .+|.++|.|++.++.|++.
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g--~~V~~~d~~~~~~~~a~~~ 42 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQQSTCEKAVER 42 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHT
T ss_pred CEEEEEeecHHHHHHHHHHHHCC--CEEEEEECCchHHHHHHHh
Confidence 379999999 999999998754 5899999999999988663
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=86.26 E-value=0.23 Score=44.28 Aligned_cols=90 Identities=18% Similarity=0.247 Sum_probs=56.7
Q ss_pred CCCCeEEEECC-Cc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC---CCCCcccEEEe
Q 006149 67 SPPPQILVPGC-GN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---FMDETFDVILD 140 (659)
Q Consensus 67 ~~~~~ILDiGC-G~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~---~~~~sFDvVi~ 140 (659)
+++++||-.|. |. |..+..+++. |. +|++++-++.-++.+++. +... ..|..+.. -....+|+|++
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~l----Ga~~---~i~~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLAL----GAEE---AATYAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHT----TCSE---EEEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCCEEEEEeccccchhhhhhhhccccc-cccccccccccccccccc----ccce---eeehhhhhhhhhcccccccccc
Confidence 68899999984 44 5667777776 65 899999988666654331 2111 11222211 12356999997
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
... . .+....+.|+|+|+++++-.
T Consensus 98 ~~G------~---------~~~~~~~~l~~~G~~v~~G~ 121 (171)
T d1iz0a2 98 VRG------K---------EVEESLGLLAHGGRLVYIGA 121 (171)
T ss_dssp CSC------T---------THHHHHTTEEEEEEEEEC--
T ss_pred ccc------h---------hHHHHHHHHhcCCcEEEEeC
Confidence 321 1 15667889999999987643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=85.89 E-value=0.28 Score=41.53 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=35.1
Q ss_pred CeEEEEccC--cchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 543 VKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 543 ~~vLiiGlG--gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
++++|+|+| |-.+++.|.... ..+.+||.||+.++-+++.+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g--~~vvvid~d~~~~~~~~~~~ 43 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMG--HEVLAVDINEEKVNAYASYA 43 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCCEEEESCHHHHHHTTTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEecCcHHHHHHHHHhC
Confidence 478999999 888999998764 57999999999999887654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.77 E-value=3.5 Score=38.30 Aligned_cols=74 Identities=14% Similarity=0.245 Sum_probs=55.9
Q ss_pred CCCeEEEECCCcc---hHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC------CCCCcccEE
Q 006149 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------FMDETFDVI 138 (659)
Q Consensus 68 ~~~~ILDiGCG~G---~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~------~~~~sFDvV 138 (659)
.+.++|.-|++.| ..+..|++.|. +|+.+|.++.-++.+.+.. .++.++++|+.+.. -.-+..|++
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~g~iDil 80 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC----PGIEPVCVDLGDWEATERALGSVGPVDLL 80 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc----CCCeEEEEeCCCHHHHHHHHHHhCCceEE
Confidence 5789999999887 56677888897 9999999998877664433 46888999998752 122579999
Q ss_pred Eecccccc
Q 006149 139 LDKGGLDA 146 (659)
Q Consensus 139 i~~g~l~~ 146 (659)
+.+.....
T Consensus 81 VnnAg~~~ 88 (244)
T d1pr9a_ 81 VNNAAVAL 88 (244)
T ss_dssp EECCCCCC
T ss_pred Eecccccc
Confidence 97665544
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=85.36 E-value=2.1 Score=40.15 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=71.1
Q ss_pred CCCeEEEECCCcc---hHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc-CCCCcEEEEeecCCCC-----C-----CCC
Q 006149 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ-----F-----MDE 133 (659)
Q Consensus 68 ~~~~ILDiGCG~G---~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~-~~~~i~~~~~D~~~l~-----~-----~~~ 133 (659)
.+.++|.-|++.| ..+..|++.|. +|+.+|.++..+++..+.... .+.++.++.+|+.+.. + .-+
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 82 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG 82 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4679999999887 35677788897 999999998887766554433 3467888999998752 0 125
Q ss_pred cccEEEecccccccCCccc----chH--------HHHHHHHHHHhccc--cCeEEEEEE
Q 006149 134 TFDVILDKGGLDALMEPEL----GHK--------LGNQYLSEVKRLLK--SGGKFVCLT 178 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~----~~~--------~~~~~l~ei~rvLk--pGG~lvi~~ 178 (659)
..|+++.+.......+..+ +.. ..-.+.+.+.+.|+ .+|.++.+.
T Consensus 83 ~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~ 141 (251)
T d1vl8a_ 83 KLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIG 141 (251)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccc
Confidence 7999997665543322211 110 13344555566664 356766654
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=85.26 E-value=0.46 Score=39.57 Aligned_cols=44 Identities=20% Similarity=0.171 Sum_probs=36.0
Q ss_pred CCCCeEEEEccC--cchHHHHHHhhCCCccEEEEec--------ChhHHHHHHhhc
Q 006149 540 GKSVKAVVIGLG--AGLLPMFLHECMPFVGIEAVEL--------DLTMLNLAEDYF 585 (659)
Q Consensus 540 ~~~~~vLiiGlG--gG~l~~~l~~~~p~~~i~~VEi--------Dp~V~~vA~~~F 585 (659)
.+|++|+|||+| |--++..|++. +.+|++||- ||.+.+..+++|
T Consensus 20 ~~p~~v~IiGgG~iG~E~A~~l~~~--g~~Vtlv~~~~~il~~~d~~~~~~~~~~l 73 (117)
T d1onfa2 20 KESKKIGIVGSGYIAVELINVIKRL--GIDSYIFARGNRILRKFDESVINVLENDM 73 (117)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSSSSCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCchHHHHHHHHHHhc--cccceeeehhccccccccHHHHHHHHHHH
Confidence 458999999999 77778888765 468999996 788888888877
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=85.23 E-value=0.56 Score=40.81 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=42.5
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-CCCCeeEE
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVF 596 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-~d~rl~vf 596 (659)
..+||=+|.|.|++.......... +|+.||+|+..++++++.+-.- ..++.+++
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii 69 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLL 69 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEE
T ss_pred CCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhh
Confidence 479999999999999876666554 9999999999999999988433 23455444
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.03 E-value=1.2 Score=41.97 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=58.4
Q ss_pred CCCeEEEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCc
Q 006149 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~s 134 (659)
.+.++|.-|.+.|. .+..|++.|+ +|+.+|.++..++++.+.....+.++.++.+|+.+.. -.-+.
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~ 88 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK 88 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46789988887763 4566777787 8999999999888887777666778899999998852 01157
Q ss_pred ccEEEeccccc
Q 006149 135 FDVILDKGGLD 145 (659)
Q Consensus 135 FDvVi~~g~l~ 145 (659)
.|+++.+....
T Consensus 89 iDilvnnAG~~ 99 (255)
T d1fmca_ 89 VDILVNNAGGG 99 (255)
T ss_dssp CCEEEECCCCC
T ss_pred CCEeeeCCcCC
Confidence 89998765543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=84.80 E-value=2.9 Score=36.85 Aligned_cols=80 Identities=18% Similarity=0.099 Sum_probs=55.4
Q ss_pred CCeEEEEccCc-chHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-------CCCCe-------------eEEeccc
Q 006149 542 SVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-------QDKSL-------------KVFNHLF 600 (659)
Q Consensus 542 ~~~vLiiGlGg-G~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-------~d~rl-------------~vf~~l~ 600 (659)
..+|||+|.|+ |.+.-.+.+...-.+|.++|+++.=.++|+++ |.. .++.. -+|+-.-
T Consensus 29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~-Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G 107 (174)
T d1e3ia2 29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL-GATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG 107 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh-CCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc
Confidence 36899999994 77777777777656899999999999999884 433 12222 2334444
Q ss_pred chhHHHHHHHhhccCCCC-cEEEecC
Q 006149 601 CLQLEEDVNLVLFGLSSE-SCIKDNS 625 (659)
Q Consensus 601 ~~~f~~~~~~~Lf~~~~~-g~~~~n~ 625 (659)
.....+..-+.+ +++ |.++.-.
T Consensus 108 ~~~~~~~a~~~~---~~g~G~~v~vG 130 (174)
T d1e3ia2 108 TAQTLKAAVDCT---VLGWGSCTVVG 130 (174)
T ss_dssp CHHHHHHHHHTB---CTTTCEEEECC
T ss_pred cchHHHHHHHHh---hcCCeEEEecC
Confidence 556666666666 785 8776643
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.48 E-value=1.3 Score=43.61 Aligned_cols=64 Identities=11% Similarity=0.205 Sum_probs=48.9
Q ss_pred CCCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhcCCCCCCCeeEEe-cccchhHHHHH
Q 006149 541 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVFN-HLFCLQLEEDV 608 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf~-~l~~~~f~~~~ 608 (659)
....||-||=|-|+|.+.|... .|. ++++||+|+...+.-++-|. +.++.++. ..+....+.++
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~-~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~~~~~~~l 108 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPR-QYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDWSTYSNL 108 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCS-EEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCHHHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCC-EEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhhcchhhhh
Confidence 4567999999999999999876 454 89999999999999988874 56787763 23344444443
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=84.45 E-value=1.4 Score=41.79 Aligned_cols=112 Identities=13% Similarity=0.005 Sum_probs=73.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-----------------------------------------CCeEEEEcCCHHHHH
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-----------------------------------------FHGITNVDFSKVVIS 105 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-----------------------------------------~~~VtgvD~S~~~i~ 105 (659)
..+..++|.-||+|.+..+.+-.. ...+.|.|+++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 345679999999999987665410 013568888888887
Q ss_pred HHH---HHhhcC--CCCcEEEEeecCCCC-----CCCCcccEEEecccccccCCcccc--hHHHHHHHHHHHhccccCeE
Q 006149 106 DML---RRNVRD--RSDMRWRVMDMTSMQ-----FMDETFDVILDKGGLDALMEPELG--HKLGNQYLSEVKRLLKSGGK 173 (659)
Q Consensus 106 ~~~---~~~~~~--~~~i~~~~~D~~~l~-----~~~~sFDvVi~~g~l~~l~~~~~~--~~~~~~~l~ei~rvLkpGG~ 173 (659)
.+. +..... ...+.+.+.|+++.. .+....++|+++--.-.-...+.+ ...+..+...+.+++.....
T Consensus 129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~ 208 (249)
T d1o9ga_ 129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 208 (249)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcE
Confidence 663 222222 256889999987642 123567999998776654432222 24577888889999966666
Q ss_pred EEEEE
Q 006149 174 FVCLT 178 (659)
Q Consensus 174 lvi~~ 178 (659)
++++.
T Consensus 209 ~~it~ 213 (249)
T d1o9ga_ 209 IAVTD 213 (249)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 66654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.22 E-value=0.4 Score=43.13 Aligned_cols=96 Identities=11% Similarity=0.128 Sum_probs=59.7
Q ss_pred CCCCeEEEECCCc--chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCC-cEEEEeecCC-CCCCCCcccEEEec
Q 006149 67 SPPPQILVPGCGN--SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTS-MQFMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~--G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~-i~~~~~D~~~-l~~~~~sFDvVi~~ 141 (659)
.++.+||--|++. |..+..|++. |. +|+++.-++.-.+.+++.- ... +.....+... .....+.||+|++.
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lG---a~~vi~~~~~~~~~~~~~~~~gvD~vid~ 105 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLG---AKEVLAREDVMAERIRPLDKQRWAAAVDP 105 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTT---CSEEEECC---------CCSCCEEEEEEC
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcc---cceeeecchhHHHHHHHhhccCcCEEEEc
Confidence 4678999999654 4567778776 65 8999888876666553321 111 1111100011 12245689999864
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
- .. ..+....+.|++||+++++...
T Consensus 106 v-----gg---------~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 106 V-----GG---------RTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp S-----TT---------TTHHHHHHTEEEEEEEEECSCC
T ss_pred C-----Cc---------hhHHHHHHHhCCCceEEEeecc
Confidence 2 21 3488999999999999998765
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.17 E-value=2.5 Score=37.59 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=58.5
Q ss_pred CCeEEEEC--CCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-------CCCCcccEE
Q 006149 69 PPQILVPG--CGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------FMDETFDVI 138 (659)
Q Consensus 69 ~~~ILDiG--CG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------~~~~sFDvV 138 (659)
+.+||-.| -|-|..+..+++. |...|++++-++.-...+.+.. +.. ...|..+.+ ..+..+|+|
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~---gad---~vi~~~~~~~~~~~~~~~~~GvDvv 104 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL---GFD---AAVNYKTGNVAEQLREACPGGVDVY 104 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS---CCS---EEEETTSSCHHHHHHHHCTTCEEEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc---cce---EEeeccchhHHHHHHHHhccCceEE
Confidence 37899988 4668899999986 7667888888875554443222 211 222333221 123569999
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
++.-. ...++...+.|+++|+++++-.
T Consensus 105 ~D~vG--------------g~~~~~~~~~l~~~G~iv~~G~ 131 (187)
T d1vj1a2 105 FDNVG--------------GDISNTVISQMNENSHIILCGQ 131 (187)
T ss_dssp EESSC--------------HHHHHHHHTTEEEEEEEEEC--
T ss_pred EecCC--------------chhHHHHhhhccccccEEEecc
Confidence 86431 1568899999999999987653
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.12 E-value=0.16 Score=44.33 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=32.1
Q ss_pred CCCeEEEEccCcch--HHHHHHhhCCCccEEEE--ecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGL--LPMFLHECMPFVGIEAV--ELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~--l~~~l~~~~p~~~i~~V--EiDp~V~~vA~~~F 585 (659)
..++|||||+|.-+ -.+.|.+. +++|++| |++|++..++.++.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~--GA~VtVvap~~~~~l~~~~~~~~ 58 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPT--GCKLTLVSPDLHKSIIPKFGKFI 58 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGG--TCEEEEEEEEECTTHHHHHCGGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHhcc
Confidence 45899999999433 44455555 4677777 89999999998765
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.95 E-value=2 Score=40.37 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=57.5
Q ss_pred CCCeEEEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC----------CCC
Q 006149 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ----------FMD 132 (659)
Q Consensus 68 ~~~~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~----------~~~ 132 (659)
.+..+|--|++.|. .+..|++.|. +|+.+|.++..+++..+...... .++.++.+|+.+.. -.-
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 35788999988763 4566777787 99999999988887766654433 46888999998853 012
Q ss_pred CcccEEEeccccccc
Q 006149 133 ETFDVILDKGGLDAL 147 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l 147 (659)
+..|+++.+......
T Consensus 81 G~iDilVnnAg~~~~ 95 (254)
T d2gdza1 81 GRLDILVNNAGVNNE 95 (254)
T ss_dssp SCCCEEEECCCCCCS
T ss_pred CCcCeeccccccccc
Confidence 578999977665543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.90 E-value=3.5 Score=34.20 Aligned_cols=85 Identities=19% Similarity=0.111 Sum_probs=54.5
Q ss_pred eEEEECCCcchHHHHHHH----cCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----CCCCcccEEEecc
Q 006149 71 QILVPGCGNSRLSEHLYD----AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----FMDETFDVILDKG 142 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~----~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----~~~~sFDvVi~~g 142 (659)
+|+-+|+ |..+..+++ .|. +|+.+|.++..++.+.+.. ...++.+|..+.. ..-...|.+++.
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~- 72 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAV- 72 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEEC-
T ss_pred EEEEECC--CHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcChhhhhhhccc-
Confidence 6788887 456555544 476 8999999998887664432 4678999998753 223567888752
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeE
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGK 173 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~ 173 (659)
..+++ ...+.....+.+.+.-.
T Consensus 73 ----t~~d~-----~N~~~~~~~k~~~~~~i 94 (132)
T d1lssa_ 73 ----TGKEE-----VNLMSSLLAKSYGINKT 94 (132)
T ss_dssp ----CSCHH-----HHHHHHHHHHHTTCCCE
T ss_pred ----CCcHH-----HHHHHHHHHHHcCCceE
Confidence 12222 23445556666777733
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=83.55 E-value=4 Score=38.09 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=55.7
Q ss_pred eEEEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCcccE
Q 006149 71 QILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDETFDV 137 (659)
Q Consensus 71 ~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~sFDv 137 (659)
.+|.-|++.|. .+..|++.|. +|+.+|.++..++++.+.....+.++.++.+|+.+.. -.-+..|+
T Consensus 3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 81 (255)
T d1gega_ 3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV 81 (255)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence 45778887763 4567777887 9999999999988887777666778999999998853 01257999
Q ss_pred EEeccccc
Q 006149 138 ILDKGGLD 145 (659)
Q Consensus 138 Vi~~g~l~ 145 (659)
++.+....
T Consensus 82 lVnnAG~~ 89 (255)
T d1gega_ 82 IVNNAGVA 89 (255)
T ss_dssp EEECCCCC
T ss_pred EEeccccc
Confidence 99765443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=83.47 E-value=2.5 Score=39.41 Aligned_cols=108 Identities=13% Similarity=0.089 Sum_probs=69.6
Q ss_pred CCCeEEEECCCcc---hHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCc
Q 006149 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G---~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~s 134 (659)
.+.++|--|.+.| ..+..|++.|+ +|+.+|.++..+++..+.. ..+..++.+|+.+.. -.-+.
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYL---GANGKGLMLNVTDPASIESVLEKIRAEFGE 78 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHh---CCCCcEEEEEecCHHHhhhhhhhhhcccCC
Confidence 4678888898877 45677777888 9999999998888776554 245778889998742 11257
Q ss_pred ccEEEecccccccCCcccc-hHH-----------HHHHHHHHHhcc--ccCeEEEEEEc
Q 006149 135 FDVILDKGGLDALMEPELG-HKL-----------GNQYLSEVKRLL--KSGGKFVCLTL 179 (659)
Q Consensus 135 FDvVi~~g~l~~l~~~~~~-~~~-----------~~~~l~ei~rvL--kpGG~lvi~~~ 179 (659)
.|+++.+..........+. ... .-.+.+.+.+.| +.+|.++.++.
T Consensus 79 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS 137 (243)
T d1q7ba_ 79 VDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGS 137 (243)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred cceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecc
Confidence 8999976554433322211 111 333445555555 34688877753
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=83.41 E-value=3.8 Score=38.94 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=51.3
Q ss_pred CeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC-CCcccEEEeccc
Q 006149 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM-DETFDVILDKGG 143 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~-~~sFDvVi~~g~ 143 (659)
.+|||+-||-|.++.-|...|+..+.++|+.+.+.+.. +.+ .+ -..++.|+.++... -...|+++....
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~-~~N---~~-~~~~~~Di~~~~~~~~~~~dll~~g~P 70 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTY-ESN---HS-AKLIKGDISKISSDEFPKCDGIIGGPP 70 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHH-HHH---CC-SEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHH-HHH---CC-CCCccCChhhCCHhHcccccEEeeccc
Confidence 37999999999999888888996777999999877643 332 23 45678999988432 236899986443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.30 E-value=2.9 Score=36.36 Aligned_cols=96 Identities=15% Similarity=0.006 Sum_probs=59.5
Q ss_pred CCCCCeEEEECCCcc-hHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-------CCCCccc
Q 006149 66 SSPPPQILVPGCGNS-RLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------FMDETFD 136 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G-~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------~~~~sFD 136 (659)
.+++++||-.|||.. .++..+++. |...|+++|.++.-++.+++.-+ -.++..+-.... ...+.+|
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa-----~~~i~~~~~~~~~~~~~~~~~~~g~D 100 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA-----TECINPQDFSKPIQEVLIEMTDGGVD 100 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC-----SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC-----cEEEeCCchhhHHHHHHHHHcCCCCc
Confidence 368999999999843 234445554 77799999999977765543221 112211111111 1235699
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+|++.-.- ...++.+..++++||.++++..
T Consensus 101 ~vid~~G~-------------~~~~~~~~~~~~~g~~~~~v~~ 130 (176)
T d2fzwa2 101 YSFECIGN-------------VKVMRAALEACHKGWGVSVVVG 130 (176)
T ss_dssp EEEECSCC-------------HHHHHHHHHTBCTTTCEEEECS
T ss_pred EeeecCCC-------------HHHHHHHHHhhcCCceeEEEEe
Confidence 99864211 2668889999999988776643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.18 E-value=1.1 Score=39.74 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=35.2
Q ss_pred CCCeEEEEccC-cchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 541 KSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 541 ~~~~vLiiGlG-gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
.-..|+|+|.| .|.+.-.+.+.+...+|.+||++++=+++|+++-.
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA 75 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA 75 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence 34579999999 44444455556655699999999999999998853
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=83.03 E-value=2.5 Score=39.70 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=69.5
Q ss_pred CCCeEEEECCCcc---hHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCc
Q 006149 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G---~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~s 134 (659)
.+.++|.-|++.| ..+..|++.|. +|+.+|.++..++++.+.. +.+..++.+|+.+.. -.-+.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 80 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 4678999998877 45677777887 8999999998887765554 356778888988752 01257
Q ss_pred ccEEEecccccccCCccc----chHH--------HHHHHHHHHhccc-cCeEEEEEEc
Q 006149 135 FDVILDKGGLDALMEPEL----GHKL--------GNQYLSEVKRLLK-SGGKFVCLTL 179 (659)
Q Consensus 135 FDvVi~~g~l~~l~~~~~----~~~~--------~~~~l~ei~rvLk-pGG~lvi~~~ 179 (659)
.|+++.+..........+ .... .-.+.+.+.+.|+ .+|.++.++.
T Consensus 81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS 138 (253)
T d1hxha_ 81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMAS 138 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccc
Confidence 899987665443222111 1110 2234455555554 5788877653
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=82.87 E-value=1.6 Score=38.26 Aligned_cols=96 Identities=17% Similarity=0.093 Sum_probs=56.7
Q ss_pred CCCCCeEEEECCCcchHH-HHHHH-cCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE-eecCCC------CCCCCccc
Q 006149 66 SSPPPQILVPGCGNSRLS-EHLYD-AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV-MDMTSM------QFMDETFD 136 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s-~~La~-~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~-~D~~~l------~~~~~sFD 136 (659)
.+++++||-+|||.+..+ ..++. .|...|+++|.++.-.+.+++.- . ..++. .+..+. ....+.+|
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G----a-~~~i~~~~~~~~~~~~~~~~~~~G~D 100 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG----A-TECVNPQDYKKPIQEVLTEMSNGGVD 100 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT----C-SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC----C-eeEEecCCchhHHHHHHHHHhcCCCC
Confidence 478999999999865443 33333 37679999999997776553321 1 11111 111111 02235799
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccC-eEEEEEEc
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSG-GKFVCLTL 179 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpG-G~lvi~~~ 179 (659)
+|++..... ..+......+++| |.+++...
T Consensus 101 ~vid~~G~~-------------~~~~~a~~~~~~~~g~~~~~~~ 131 (176)
T d2jhfa2 101 FSFEVIGRL-------------DTMVTALSCCQEAYGVSVIVGV 131 (176)
T ss_dssp EEEECSCCH-------------HHHHHHHHHBCTTTCEEEECSC
T ss_pred EEEecCCch-------------hHHHHHHHHHhcCCcceEEecC
Confidence 998643222 4566677778776 55555544
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=82.59 E-value=2.5 Score=39.31 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=70.6
Q ss_pred eEEEECCCcch---HHHHHHHcCCC------eEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CC
Q 006149 71 QILVPGCGNSR---LSEHLYDAGFH------GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FM 131 (659)
Q Consensus 71 ~ILDiGCG~G~---~s~~La~~g~~------~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~ 131 (659)
.||--|++.|- .+..|++.|.. .|+.++.++.-++...+.....+.++.++.+|+.+.. -.
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER 82 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 47788988873 45677777863 3899999999988887777666778889999998853 11
Q ss_pred CCcccEEEecccccccCCcccc-hHH-----------HHHHHHHHHhccc--cCeEEEEEEc
Q 006149 132 DETFDVILDKGGLDALMEPELG-HKL-----------GNQYLSEVKRLLK--SGGKFVCLTL 179 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~~~~~~-~~~-----------~~~~l~ei~rvLk--pGG~lvi~~~ 179 (659)
-+..|+++.+..........+- ... .-.+.+.+.+.|+ .+|.++.++.
T Consensus 83 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS 144 (240)
T d2bd0a1 83 YGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITS 144 (240)
T ss_dssp TSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred cCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEec
Confidence 2578999977655443322211 111 2334444555553 4677776653
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=82.34 E-value=1.4 Score=42.75 Aligned_cols=69 Identities=10% Similarity=-0.022 Sum_probs=51.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC-CCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM-DETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~-~~sFDvVi~~g 142 (659)
.+.+|||+-||-|.++.-|...|+.-+.++|+.+.+++..+... +.. .++|+.++... -..+|+++...
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~----~~~--~~~Di~~~~~~~~~~~Dll~ggp 79 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF----GEK--PEGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH----SCC--CBSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHC----CCC--CcCchhcCchhhcceeeeeeccc
Confidence 56899999999999999998889966788999998888654433 221 25788876422 23689888544
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=82.02 E-value=3.6 Score=38.41 Aligned_cols=76 Identities=8% Similarity=0.115 Sum_probs=56.5
Q ss_pred CCCeEEEECCCcc---hHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----C-----CCCc
Q 006149 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----F-----MDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G---~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----~-----~~~s 134 (659)
.+.++|.-|.+.| ..+..|++.|. +|+.+|.++..++.+.+... ...++.++.+|+.+.. + .-+.
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 82 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVG-TPDQIQFFQHDSSDEDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC-CTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC-CCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4678888898776 34577777897 89999999988887766653 3467899999998853 0 1257
Q ss_pred ccEEEeccccc
Q 006149 135 FDVILDKGGLD 145 (659)
Q Consensus 135 FDvVi~~g~l~ 145 (659)
.|+++.+....
T Consensus 83 iDiLVnnAg~~ 93 (251)
T d1zk4a1 83 VSTLVNNAGIA 93 (251)
T ss_dssp CCEEEECCCCC
T ss_pred ceEEEeccccc
Confidence 89988765544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=81.96 E-value=3 Score=36.08 Aligned_cols=78 Identities=12% Similarity=0.027 Sum_probs=52.9
Q ss_pred CCeEEEEccC-cchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC---CC---CC---------------ee-EEec
Q 006149 542 SVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---QD---KS---------------LK-VFNH 598 (659)
Q Consensus 542 ~~~vLiiGlG-gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~---~d---~r---------------l~-vf~~ 598 (659)
..+|||+|.| -|.+.-.+.+... ++|.+||.++.=.++|+++..-. .+ +. .| +|+-
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~ 105 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 105 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec
Confidence 4589999988 5555555555554 69999999999999999865311 11 11 12 3344
Q ss_pred ccchhHHHHHHHhhccCCCCcEEEe
Q 006149 599 LFCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 599 l~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.-.....+..-+.+ +++|.++.
T Consensus 106 ~g~~~~~~~a~~~~---~~~G~iv~ 127 (170)
T d1e3ja2 106 SGNEKCITIGINIT---RTGGTLML 127 (170)
T ss_dssp SCCHHHHHHHHHHS---CTTCEEEE
T ss_pred CCChHHHHHHHHHH---hcCCceEE
Confidence 55556666666777 99997765
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.61 E-value=0.66 Score=38.78 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=35.5
Q ss_pred CCCCeEEEEccC--cchHHHHHHhhCCCccEEEEec--------ChhHHHHHHhhc
Q 006149 540 GKSVKAVVIGLG--AGLLPMFLHECMPFVGIEAVEL--------DLTMLNLAEDYF 585 (659)
Q Consensus 540 ~~~~~vLiiGlG--gG~l~~~l~~~~p~~~i~~VEi--------Dp~V~~vA~~~F 585 (659)
..|++++|||+| |.-++.+|.+. +.+|++||. ||++.+..+++|
T Consensus 21 ~~p~~~vIiG~G~ig~E~A~~l~~l--G~~Vtii~~~~~~l~~~d~ei~~~l~~~l 74 (122)
T d1v59a2 21 EIPKRLTIIGGGIIGLEMGSVYSRL--GSKVTVVEFQPQIGASMDGEVAKATQKFL 74 (122)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSSSSSCHHHHHHHHHHH
T ss_pred cCCCeEEEECCCchHHHHHHHHHhh--CcceeEEEeccccchhhhhhhHHHHHHHH
Confidence 457899999999 88888888876 468999986 557777777777
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=81.51 E-value=0.85 Score=37.86 Aligned_cols=44 Identities=20% Similarity=0.126 Sum_probs=36.9
Q ss_pred CCCCeEEEEccC--cchHHHHHHhhCCCccEEEEe--------cChhHHHHHHhhc
Q 006149 540 GKSVKAVVIGLG--AGLLPMFLHECMPFVGIEAVE--------LDLTMLNLAEDYF 585 (659)
Q Consensus 540 ~~~~~vLiiGlG--gG~l~~~l~~~~p~~~i~~VE--------iDp~V~~vA~~~F 585 (659)
.-|++++|||+| |.-++.++.+. +.+|++|| .|+++.+..+++|
T Consensus 20 ~~p~~i~IiG~G~ig~E~A~~l~~~--G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l 73 (119)
T d3lada2 20 NVPGKLGVIGAGVIGLELGSVWARL--GAEVTVLEAMDKFLPAVDEQVAKEAQKIL 73 (119)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSSSTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEECCChHHHHHHHHHHHc--CCceEEEEeecccCCcccchhHHHHHHHH
Confidence 567999999999 88889888876 46899998 3788888888887
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.38 E-value=0.62 Score=45.43 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=51.1
Q ss_pred CCeEEEECCCcchHHHHHHHcCCC--eEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC---CCCCcccEEEecc
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFH--GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---FMDETFDVILDKG 142 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~--~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~---~~~~sFDvVi~~g 142 (659)
+.+|+|+-||-|.++.-|...|+. -+.++|+.+.+++..+. +.+...+++.|+.++. ++...+|+++...
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~----n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKY----NFPHTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHH----HCTTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHH----HCCCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence 468999999999999888777862 36799999987764432 3456777888988764 2234689888543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.20 E-value=2.4 Score=39.76 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=54.1
Q ss_pred CCCeEEEECCCcc---hHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----C-----CCCc
Q 006149 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----F-----MDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G---~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----~-----~~~s 134 (659)
.+.++|--|++.| ..+..|++.|. +|+.+|.++..++.+.+. .++..++.+|+.+.. + .-+.
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQE----LPGAVFILCDVTQEDDVKTLVSETIRRFGR 79 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----CTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh----cCCCeEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999887 35677777887 999999999887765443 356888999998853 0 1157
Q ss_pred ccEEEeccccc
Q 006149 135 FDVILDKGGLD 145 (659)
Q Consensus 135 FDvVi~~g~l~ 145 (659)
.|+++.+....
T Consensus 80 iDilVnnAG~~ 90 (250)
T d1ydea1 80 LDCVVNNAGHH 90 (250)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEeccccc
Confidence 89999766543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=81.03 E-value=1.2 Score=39.34 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=42.2
Q ss_pred CCccchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCc-chHHHHHHhhCCCccEEEEecChhHHHHHHhh
Q 006149 511 HGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 511 ~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGg-G~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~ 584 (659)
..-|.|.|..+.-+.+-.. ......+|||+|.|| |.+...+.+.....+|.++|+++.=+++|+++
T Consensus 5 aa~lgCa~~Ta~~a~~~~a--------~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l 71 (174)
T d1p0fa2 5 SCLIGCGFATGYGAAVNTA--------KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL 71 (174)
T ss_dssp GGGGGTHHHHHHHHHHTTT--------CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred HHhhhhHHHHHHHHHHHhh--------CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence 3447787776664422111 112335799999993 33333344444445899999999999999885
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=80.90 E-value=2.9 Score=36.81 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=60.9
Q ss_pred CCCCeEEEECCCc--chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC------CCCCCcccE
Q 006149 67 SPPPQILVPGCGN--SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM------QFMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~--G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l------~~~~~sFDv 137 (659)
+++++||-.|++. |..+..+++. |. +|++++-++.-++.+++. +.. ..+.-+-.+. ......+|+
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~----Ga~-~vi~~~~~~~~~~~~~~~~~~Gvd~ 101 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQI----GFD-AAFNYKTVNSLEEALKKASPDGYDC 101 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----TCS-EEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhh----hhh-hhcccccccHHHHHHHHhhcCCCce
Confidence 6889999999865 4566777776 55 999999998776654332 211 1121111111 013456999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|++.- . .+.++...+.|+++|+++++-.
T Consensus 102 v~D~v-----G---------~~~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 102 YFDNV-----G---------GEFLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp EEESS-----C---------HHHHHHHGGGEEEEEEEEECCC
T ss_pred eEEec-----C---------chhhhhhhhhccCCCeEEeecc
Confidence 98632 1 1568899999999999998753
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=80.64 E-value=0.86 Score=37.59 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=32.7
Q ss_pred CCCCeEEEEccC--cchHHHHHHhhCCCccEEEEec--------ChhHHHHHHhhc
Q 006149 540 GKSVKAVVIGLG--AGLLPMFLHECMPFVGIEAVEL--------DLTMLNLAEDYF 585 (659)
Q Consensus 540 ~~~~~vLiiGlG--gG~l~~~l~~~~p~~~i~~VEi--------Dp~V~~vA~~~F 585 (659)
.-|++|+|||+| |--++.++++.. .+|++||- ||.+.+...+.|
T Consensus 19 ~~p~~vvIiGgG~ig~E~A~~l~~~G--~~Vtlve~~~~~l~~~d~~~~~~~~~~l 72 (116)
T d1gesa2 19 ALPERVAVVGAGYIGVELGGVINGLG--AKTHLFEMFDAPLPSFDPMISETLVEVM 72 (116)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSSTTSCHHHHHHHHHHH
T ss_pred hCCCEEEEECCChhhHHHHHHhhccc--cEEEEEeecchhhhhcchhhHHHHHHHH
Confidence 457899999999 777888887764 68999997 455555555544
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=80.33 E-value=1.1 Score=36.75 Aligned_cols=46 Identities=9% Similarity=0.044 Sum_probs=34.6
Q ss_pred CCCCeEEEEccC--cchHHHHHHhhCC-CccEEEEec--------ChhHHHHHHhhc
Q 006149 540 GKSVKAVVIGLG--AGLLPMFLHECMP-FVGIEAVEL--------DLTMLNLAEDYF 585 (659)
Q Consensus 540 ~~~~~vLiiGlG--gG~l~~~l~~~~p-~~~i~~VEi--------Dp~V~~vA~~~F 585 (659)
..|++++|||+| |--++.++.++.. ..+|+++|- ||.+.+..+++|
T Consensus 16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l 72 (117)
T d1feca2 16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQL 72 (117)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHH
T ss_pred ccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHH
Confidence 457899999999 6667777777654 578999986 555666666665
|