Citrus Sinensis ID: 006179

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------66
MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKDSTTKENS
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccc
ccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccHHHHHHHHccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHccccccc
MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLdsaemwsfndtstSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTqhcddvirgqntgtyqretkldefecrdvhinndadtnlvsqrndpaycdieadrkGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVlagngekriviperdGRLRNLLKktnlrrwigtldfsgnegqadlniregistrrsnSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTAlgsslpvswiaesddgsinentdsesgdihgdssnekmDSVSAAGFEMVELLILAAQILKdsttkens
mdenskekeneseALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKtqhcddvirgqntgtyqreTKLDEFECRDVHinndadtnlvsqrndPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEekvlagngekriviperdgrlrnllkktnlrrwigtldfsgnegqadlniregistrrsnsidfARMRIENATLKESLENMDHLISSIRRLRLSLSKVkelatsedtigsmseTLDDIITEAKLVKTALgsslpvswiaesddgsinentdsesgdihgdssNEKMDSVSAAGFEMVELLILAAQilkdsttkens
MDenskekeneseALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMeaekakekeeLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGrlrnllkktnlrrWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHlissirrlrlslsKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKDSTTKENS
*********************************EQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACAREN**L**ELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFA***********************************************************SFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYI*********************************SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLV******AYCDI***************LQEKVAALLLLS******LLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNI*************FARMRI************DHLISSIRRLRLSL******************TLDDIITEAKLVKTALGSSLPVSWI*********************************AGFEMVELLILAAQIL*********
********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************SIRRLRLSLSKVK*************ETLDDIITEAKLVKTALGSSLPVSWIA*****************************VSAAGFEMVELLILAAQIL*********
**************LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALE***********NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSIN*******************DSVSAAGFEMVELLILAAQILK********
***********SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNT*****ETKLDEFECRDVHINNDA**********************EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICN********AGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTL***********************SIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAE**************************DSVSAAGFEMVELLILAAQILKDS******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDENxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAGPSYLAVATRMHFQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAxxxxxxxxxxxxxxxxxxxxxLMSQKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYxxxxxxxxxxxxxxxxxxxxxLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKDSTTKENS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query658
296083035673 unnamed protein product [Vitis vinifera] 0.989 0.967 0.674 0.0
359475478721 PREDICTED: uncharacterized protein LOC10 0.989 0.902 0.626 0.0
255583327658 conserved hypothetical protein [Ricinus 0.980 0.980 0.659 0.0
356495819653 PREDICTED: uncharacterized protein LOC10 0.971 0.978 0.628 0.0
449438615641 PREDICTED: uncharacterized protein LOC10 0.942 0.967 0.586 0.0
449479020641 PREDICTED: uncharacterized LOC101211967 0.943 0.968 0.584 0.0
15225987629 myosin heavy chain-related protein [Arab 0.948 0.992 0.557 0.0
297831932629 predicted protein [Arabidopsis lyrata su 0.948 0.992 0.557 1e-179
238479244652 myosin heavy chain-related protein [Arab 0.948 0.957 0.548 1e-178
147771163655 hypothetical protein VITISV_013873 [Viti 0.834 0.838 0.562 1e-165
>gi|296083035|emb|CBI22439.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/657 (67%), Positives = 521/657 (79%), Gaps = 6/657 (0%)

Query: 7   EKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEI 66
           EK N++E+L+ARIQQLEHERDELRKDIEQLC+QQAGPSYL VATRMHFQRTAGLEQEIE 
Sbjct: 3   EKSNDNESLIARIQQLEHERDELRKDIEQLCIQQAGPSYLVVATRMHFQRTAGLEQEIEN 62

Query: 67  LKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE 126
           LK+K+AA  REN NLQEELSEAYRIK QLADLH AEV KN++AEKQ+KFFQGC+AAAFAE
Sbjct: 63  LKKKVAASTRENLNLQEELSEAYRIKSQLADLHNAEVSKNLDAEKQIKFFQGCVAAAFAE 122

Query: 127 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186
           RD+S+MEAEKAKEKEEL  Q+FN FQ R++EL S+N++ K+ N  L+ DL  QE+ NE+F
Sbjct: 123 RDHSIMEAEKAKEKEELALQEFNNFQKRIKELESDNLKQKQLNVALQIDLANQEDQNETF 182

Query: 187 KEVINKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFN---DTSTSKYISALEDELE 242
           K+VINKF+EIRQ SLE  E  +W+DKC CLL D  EMWSFN   +TSTSKYI ALE+ELE
Sbjct: 183 KKVINKFFEIRQYSLEAFEDANWDDKCGCLLSDPVEMWSFNTNEETSTSKYIDALEEELE 242

Query: 243 KTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVV 302
             R+SV+NLQ+KLR+GLEIENHLKK V ELEK+ I S +   N I+ L   HSQ R+HVV
Sbjct: 243 MVRNSVDNLQNKLRVGLEIENHLKKKVSELEKQKIISHQMFKNRISGLLHYHSQHRLHVV 302

Query: 303 NSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNL 362
           N L+EG+SH+KSI DV+EEK +   D  R QN    QR+ KL E ECRDVH++   D N 
Sbjct: 303 NLLDEGKSHLKSIIDVVEEKIRQL-DADREQNLEPPQRDLKLYENECRDVHVSIVGDHNS 361

Query: 363 VSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIE 422
           V++ N P   +   D  G+ASE  AQA+QEKVAALLLLSQQEERHLLE NVN  LQKK+E
Sbjct: 362 VAESNIPGLKNNVIDGMGDASEAFAQAMQEKVAALLLLSQQEERHLLESNVNIVLQKKME 421

Query: 423 ELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGR 482
           ELQRNL QVT EKVKALMELAQLKQ+YQLLQEKI ++MK+   LA  GEKR    ERDG+
Sbjct: 422 ELQRNLLQVTNEKVKALMELAQLKQEYQLLQEKISHDMKQGNFLADIGEKRNATLERDGK 481

Query: 483 LRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSN-SIDFARMRIENATLKESLE 541
           L+NLLKKT LRRWIG LD+SGN+ +A LN     S R+SN S+DFARM+IENATLKES+E
Sbjct: 482 LKNLLKKTYLRRWIGALDYSGNQAEAHLNSEGNFSGRKSNYSMDFARMKIENATLKESME 541

Query: 542 NMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIA 601
           +++HL SSIRRLRL+L + KE  TS  T+ S+ E LDDII EAKLVKTALGSSLPVSW A
Sbjct: 542 SIEHLTSSIRRLRLTLLEAKESVTSGGTVSSVLEALDDIINEAKLVKTALGSSLPVSWSA 601

Query: 602 ESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKDSTTKENS 658
           E+D  S  E+ D+  G  HGDSS+EK+DSV AAGFEMVELLI A Q+LKDST K +S
Sbjct: 602 EADGESFGESMDNAPGCFHGDSSSEKIDSVCAAGFEMVELLIFAVQVLKDSTIKRSS 658

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359475478|ref|XP_002264967.2| PREDICTED: uncharacterized protein LOC100251573 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255583327|ref|XP_002532426.1| conserved hypothetical protein [Ricinus communis] gi|223527875|gb|EEF29967.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356495819|ref|XP_003516769.1| PREDICTED: uncharacterized protein LOC100775191 [Glycine max] Back     alignment and taxonomy information
>gi|449438615|ref|XP_004137083.1| PREDICTED: uncharacterized protein LOC101211967 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449479020|ref|XP_004155483.1| PREDICTED: uncharacterized LOC101211967 [Cucumis sativus] Back     alignment and taxonomy information
>gi|15225987|ref|NP_179075.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|334184229|ref|NP_001189526.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|3810592|gb|AAC69374.1| unknown protein [Arabidopsis thaliana] gi|330251225|gb|AEC06319.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|330251227|gb|AEC06321.1| myosin heavy chain-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297831932|ref|XP_002883848.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329688|gb|EFH60107.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|238479244|ref|NP_001154517.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|330251226|gb|AEC06320.1| myosin heavy chain-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147771163|emb|CAN60964.1| hypothetical protein VITISV_013873 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query658
TAIR|locus:2064247652 MEE13 "AT2G14680" [Arabidopsis 0.936 0.944 0.522 7.4e-153
UNIPROTKB|F1N1F8 3077 CENPF "Uncharacterized protein 0.632 0.135 0.204 2.8e-11
UNIPROTKB|F1PRS3 1869 CENPF "Uncharacterized protein 0.594 0.209 0.218 1.8e-09
UNIPROTKB|Q02224 2701 CENPE "Centromere-associated p 0.623 0.151 0.207 2.2e-09
UNIPROTKB|F1SQ11 1411 EEA1 "Uncharacterized protein" 0.656 0.306 0.213 4.6e-09
UNIPROTKB|F1MYN21194 CGN "Uncharacterized protein" 0.670 0.369 0.224 7.8e-09
UNIPROTKB|P49454 3210 CENPF "Centromere protein F" [ 0.632 0.129 0.219 9e-09
UNIPROTKB|F1NNI6 3103 LOC100858793 "Uncharacterized 0.664 0.140 0.218 3e-08
UNIPROTKB|F8W7S5 751 RRBP1 "Ribosome-binding protei 0.563 0.494 0.254 3.1e-08
DICTYBASE|DDB_G0290503 1492 DDB_G0290503 [Dictyostelium di 0.694 0.306 0.214 3.6e-08
TAIR|locus:2064247 MEE13 "AT2G14680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1491 (529.9 bits), Expect = 7.4e-153, P = 7.4e-153
 Identities = 345/660 (52%), Positives = 436/660 (66%)

Query:    15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAAC 74
             L ARI+QLEHER+EL+KDIEQLCMQQ GPS L VA RMHFQRTA LEQEIE LK K+AAC
Sbjct:    11 LKARIKQLEHERNELQKDIEQLCMQQGGPSILGVAARMHFQRTASLEQEIESLKLKLAAC 70

Query:    75 ARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMXX 134
              RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQG +AAAF+ERD SVM  
Sbjct:    71 TREKHNLQEELAEAYRVKAQLADLHAGEVAKNLEAEKQVRFFQGSVAAAFSERDKSVMEA 130

Query:   135 XXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFY 194
                     +MSQK +E + RLEELSS+ +  K+ N TL+ DL K EE   ++  VI KFY
Sbjct:   131 EKAEENAEMMSQKLSEIEMRLEELSSDCLVQKRLNDTLQADLAKLEEQTRTYAGVIEKFY 190

Query:   195 EIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253
             +IR+ SL E LE S  +KCA LL D  E W+FND STS Y++ALE EL K +++V+NLQS
Sbjct:   191 DIRKASLCESLEMSLHEKCASLLDDPIESWTFNDPSTSDYVAALEGELGKVKNTVDNLQS 250

Query:   254 KLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIK 313
             KLR+GLEIENHLKK VR LEKK I +D  I N I ++R  HSQLR +++  L E   +IK
Sbjct:   251 KLRVGLEIENHLKKRVRALEKKNIVADGLIVNGITDIRHHHSQLRAYIIALLNEEGLYIK 310

Query:   314 SISDVIEEKTQ-HCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYC 372
             SIS  +EEK + H  +V   QN    Q + K DE ECRDVH+    ++  V++  + +  
Sbjct:   311 SISKNVEEKLKLHSSEV---QNVVPPQHDLKPDESECRDVHMTTVVESCQVTKLAEASIA 367

Query:   373 DIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVT 432
              I A+ +G+ASE  AQALQEKV ALLLLSQQEERHL E NVN+ALQ+K++ELQRN+ QVT
Sbjct:   368 KIMAESRGDASEAFAQALQEKVGALLLLSQQEERHLHEENVNAALQQKVDELQRNILQVT 427

Query:   433 TEKVKALMELAQLKQDYQLLQE-----KIC--------------NEMK--EEKVLAGNGE 471
              EKV+ LMELAQL+Q+YQ L+E     K C              N+M    E+   GN  
Sbjct:   428 NEKVRTLMELAQLRQEYQSLREHGTFCKWCKPSFKTNFALSSVLNKMSGTREEESTGNSG 487

Query:   472 KRIVIPERDGXXXXXXXXXXXXXWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRI 531
             + ++  E+DG             WI   D S + G + LN     +   SN I+++RM++
Sbjct:   488 RIVISNEKDGRLKNMWKKSYINRWI---DPS-SRGGSHLNTEADYA---SN-IEYSRMKV 539

Query:   532 ENATLKESLENMDHXXXXXXXXXXXXXKVKELATSEDTIGSMSETLDDIITEAKLVKTAL 591
             E A +KE+LE+M H             KVKEL  +E T  S    + +I+ EA  +KTAL
Sbjct:   540 EYAAIKENLESMGHLTTSIRRLRLALLKVKELNDTETTARSCEVAIANILVEATHLKTAL 599

Query:   592 GSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKD 651
             G S+P+SW AESD  S+   TD       G+SS E+ DSVSAAGFEMVEL+ILAA+I+K+
Sbjct:   600 GISIPISWSAESDIESV---TD-------GESSCERTDSVSAAGFEMVELVILAAEIMKE 649
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
UNIPROTKB|F1N1F8 CENPF "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRS3 CENPF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q02224 CENPE "Centromere-associated protein E" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQ11 EEA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MYN2 CGN "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P49454 CENPF "Centromere protein F" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NNI6 LOC100858793 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F8W7S5 RRBP1 "Ribosome-binding protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00001484001
SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (658 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query658
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 65/281 (23%), Positives = 119/281 (42%), Gaps = 22/281 (7%)

Query: 2   DENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMH--FQRTAG 59
                  E E E L +R+++LE E +EL +++E+L  +        +   +    +  A 
Sbjct: 722 KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLE-----ELEEELESLEEALAK 776

Query: 60  LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGC 119
           L++EIE L++K  A   E   L+EEL EA R    L     +   +    E++++  +  
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE 836

Query: 120 MAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179
           +     + D    E E+ +++ E + ++  E +   EEL  E  EL+++   L  +L + 
Sbjct: 837 IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL 896

Query: 180 EELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239
           E      KE I K    R + LE        K   L ++  E+    +    +Y   LE 
Sbjct: 897 ESELAELKEEIEK-LRERLEELEA-------KLERLEVELPEL---EEELEEEYEDTLET 945

Query: 240 ELEKTRSSVENLQSKLRM----GLEIENHLKKSVRELEKKI 276
           ELE+    +E     L       +E    +++   EL+ + 
Sbjct: 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQR 986

Length = 1163
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 658
PRK09039343 hypothetical protein; Validated 97.23
PF00038312 Filament: Intermediate filament protein; InterPro: 97.13
PHA02562562 46 endonuclease subunit; Provisional 96.54
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 96.21
COG11961163 Smc Chromosome segregation ATPases [Cell division 96.08
PRK02224880 chromosome segregation protein; Provisional 95.76
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 95.75
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 95.59
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 94.79
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 94.61
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 94.44
PRK02224880 chromosome segregation protein; Provisional 93.8
PRK03918880 chromosome segregation protein; Provisional 93.63
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 93.34
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 93.04
PRK09039343 hypothetical protein; Validated 93.03
COG11961163 Smc Chromosome segregation ATPases [Cell division 91.95
PRK04863 1486 mukB cell division protein MukB; Provisional 91.89
PRK10884206 SH3 domain-containing protein; Provisional 91.8
PF00038312 Filament: Intermediate filament protein; InterPro: 91.68
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 91.61
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 91.3
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 91.07
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 90.53
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 90.41
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 90.1
PRK03918 880 chromosome segregation protein; Provisional 90.0
PF10174775 Cast: RIM-binding protein of the cytomatrix active 89.99
PRK11637428 AmiB activator; Provisional 89.92
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 89.87
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 89.28
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 89.27
PRK11637428 AmiB activator; Provisional 89.03
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 88.9
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 88.24
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 87.59
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 87.3
KOG2991330 consensus Splicing regulator [RNA processing and m 87.23
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 86.97
PHA02562562 46 endonuclease subunit; Provisional 86.8
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 85.56
PF04912388 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit 85.54
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 82.87
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 82.72
>PRK09039 hypothetical protein; Validated Back     alignment and domain information 
Probab=97.23  E-value=0.048  Score=56.93  Aligned_cols=114  Identities=21%  Similarity=0.230  Sum_probs=63.7

Q ss_pred             CchHhhhhhH-----------------HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 006179           43 PSYLAVATRM-----------------HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIK  105 (658)
Q Consensus        43 pgyl~vATrM-----------------~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~K  105 (658)
                      ||||++-|-+                 ++|-..++++++..|+.+++.                     |+++-+-+...
T Consensus        17 pg~vd~~~~ll~~~~f~l~~f~~~q~fLs~~i~~~~~eL~~L~~qIa~---------------------L~e~L~le~~~   75 (343)
T PRK09039         17 PGFVDALSTLLLVIMFLLTVFVVAQFFLSREISGKDSALDRLNSQIAE---------------------LADLLSLERQG   75 (343)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence            9999987754                 356677777777777776655                     55555555555


Q ss_pred             hHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179          106 NMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE  184 (658)
Q Consensus       106 n~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e  184 (658)
                      +..++..+.=.+.....|-++|+.  .|  ..-.   .......+.+.|+..++..+..+|..-...+.+...+..|.+
T Consensus        76 ~~~l~~~l~~l~~~l~~a~~~r~~--Le--~~~~---~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~  147 (343)
T PRK09039         76 NQDLQDSVANLRASLSAAEAERSR--LQ--ALLA---ELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIA  147 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHH--HH--HHHh---hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            555555555555555544444431  11  1000   001122355566666666666666665555666666665555

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>KOG2991 consensus Splicing regulator [RNA processing and modification] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) [] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query658
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 76.0 bits (186), Expect = 2e-14
 Identities = 82/570 (14%), Positives = 168/570 (29%), Gaps = 160/570 (28%)

Query: 129 NSVMEAEKA----KEKEELMSQKFNEFQT-RLEELSSENIELKKQNATLRFDLEKQEELN 183
             V +  K+    +E + ++  K     T RL       +  K++    +F +E+   +N
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT----LLSKQEEMVQKF-VEEVLRIN 90

Query: 184 ESFKEVINKF-YEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST-SKYISALEDEL 241
             F  +++    E RQ S+      + ++   L         +ND    +KY  +     
Sbjct: 91  YKF--LMSPIKTEQRQPSMM--TRMYIEQRDRL---------YNDNQVFAKYNVSRLQPY 137

Query: 242 EKTRSSVENLQSKLRMGLEIENH----LKKSVRELEKKIIHSDKFI---SNAI--AELRL 292
            K R ++  L+    + +           K+   +   +  S K        I    L+ 
Sbjct: 138 LKLRQALLELRPAKNVLI----DGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 293 CHS---------QLRVHVVNSLEEGRSHIKSISDVIEE------------KTQHC----D 327
           C+S         +L   +  +      H  +I   I                ++C     
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 328 DVIRGQNTGTYQRETKLDEFE--C------RDVHINNDADTNLVSQRNDPAYCDIEADRK 379
           +V   QN          + F   C      R   + +       +         ++    
Sbjct: 252 NV---QNAKA------WNAFNLSCKILLTTRFKQVTDFLSAATTTHI------SLDHHSM 296

Query: 380 G----EASETLAQALQEKVAAL---------LLLSQ-----QEE-------RHLLERNVN 414
                E    L + L  +   L           LS      ++        +H+    + 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 415 SALQKKIEEL----QRNLFQ---VTTEKVK---ALMELAQLKQDYQLLQEKICNEMKEEK 464
           + ++  +  L     R +F    V          L+ L             + N++ +  
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLHKYS 415

Query: 465 VLAGNG-EKRIVIPERDGRLR-NLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSN 522
           ++     E  I IP     L+  L  +  L R I  +D          NI      +  +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDH--------YNIP-----KTFD 460

Query: 523 SIDFARMRIENAT-------LKESLENMDHLISSIRRLRLSLS----KVKELATSEDTIG 571
           S D     ++          LK         ++  R + L       K++  +T+ +  G
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNI--EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 572 SMSETLDDI------ITEAKLVKTALGSSL 595
           S+  TL  +      I +       L +++
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAI 548
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query658
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 93.15
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 91.43
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 90.17
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 86.72
3s4r_A93 Vimentin; alpha-helix, cytoskeleton, intermediate 85.95
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 85.83
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 85.79
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 83.92
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 83.82
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 82.75
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 82.6
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 81.83
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 80.67
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=93.15  E-value=4.1  Score=35.67  Aligned_cols=23  Identities=13%  Similarity=0.317  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 006179           14 ALMARIQQLEHERDELRKDIEQL   36 (658)
Q Consensus        14 ~l~~rI~qLe~ERdEL~KDIEqL   36 (658)
                      .+..++..|+++.+.+...++.+
T Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~l   25 (284)
T 1c1g_A            3 AIKKKMQMLKLDKENALDRADEA   25 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHH
Confidence            45556666666666666655554
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00