Citrus Sinensis ID: 006191

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------
MLVSALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKGSSNRRRRFNLEMLIPSAGWVSRAWKHSEEDLLESSGLDAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIFVCYLLYSEYKYICVKRMDYFYSSKPQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILTIKFVSQVVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVLDPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDDFEVPAIHYHSELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHAIAVGIFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFLPNFIAYPAEVH
ccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccccccccHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccEEEcccccccccccHHHHHHHccccccEEEEEHHEEcccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHccccccccccccccc
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccHHHHccccccccccccccccccHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEcccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccHHHHHHHHHHHHccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHHHccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEc
MLVSALLTSVGINSGLCVLFFTLYSIlrkqpsnyevYVPRllakgssnrrrrfnlemlipsagwvsraWKHSEEDllessgldaVVFMRVITFSLKVFLFAGIIGIFVilpvnaggteiyeidfadlpnnsldvftisnvnrgshrLWVHFGAVYLVTIFVCYLLYSEYKYICVKRmdyfysskpqphqfTVLVRSipvsagstigdtvenffkefhpttylsHTVIHQTSNLCRLMDYAKKLYGRLIHLqsdsnqeknqQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMqqstnptdwlleqapepndvywpffsASFMRRWISKIVVVVACILLTILFLIPVLVVqgltnlnqLEIWFPFLKSILTIKFVSQVVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLnivldpknipsrlgvavpAQASFFIAYVVTsgwtgissELFQIFPLICsliskpftkskdddfevpaihyhselPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFInvyepkyetagkfwpiVHNSMIFSLVLMHAIAVGIFTIKKlstastlifplpvltLLFNEYCRkrflpnfiaypaevh
MLVSALLtsvginsgLCVLFFTLYSILRKQPSNYEVYVPRLlakgssnrrrrFNLEMLIPSAGWVSRAWKHSEEDLLESSGLDAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIFVCYLLYSEYKYICVKRMDYFYSSKPQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLqsdsnqeknqqrKVDLVDHygkrlenieensrlersEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILTIKFVSQVVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVLDPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDDFEVPAIHYHSELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHAIAVGIFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFLPNFiaypaevh
MLVSALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKGSSNRRRRFNLEMLIPSAGWVSRAWKHSEEDLLESSGLDAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIFVCYLLYSEYKYICVKRMDYFYSSKPQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILTIKFVSQVVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVLDPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDDFEVPAIHYHSELPRILLFGLLGITYFflaplilpflliylclayiiyRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHAIAVGIFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFLPNFIAYPAEVH
***SALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKGSSNRRRRFNLEMLIPSAGWVSRAWKHSEEDLLESSGLDAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIFVCYLLYSEYKYICVKRMDYFYSSKPQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHL********************************************LQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILTIKFVSQVVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVLDPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDDFEVPAIHYHSELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHAIAVGIFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFLPNFIAYP****
MLVSALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRL******************PSAGWVSRAWKHSEEDLLESSGLDAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIFVCYLLYSEYKYICVKRMDYFYSSKPQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILTIKFVSQVVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVLDPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDDFEVPAIHYHSELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHAIAVGIFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFLPNFIAYPAEV*
MLVSALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKGSSNRRRRFNLEMLIPSAGWVSRAWKHSEEDLLESSGLDAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIFVCYLLYSEYKYICVKRMDYFYSSKPQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSD**********VDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILTIKFVSQVVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVLDPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDDFEVPAIHYHSELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHAIAVGIFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFLPNFIAYPAEVH
*LVSALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKGS***RRRFNLEMLIPSAGWVSRAWKHSEEDLLESSGLDAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIFVCYLLYSEYKYICVKRMDYFYSSKPQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILTIKFVSQVVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVLDPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDDFEVPAIHYHSELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHAIAVGIFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFLPNFIAYPAEVH
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MLVSALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKGSSNRRRRFNLEMLIPSAGWVSRAWKHSEEDLLESSGLDAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIFVCYLLYSEYKYICVKRMDYFYSSKPQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILTIKFVSQVVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVLDPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDDFEVPAIHYHSELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHAIAVGIFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFLPNFIAYPAEVH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query657 2.2.26 [Sep-21-2011]
Q09809793 Uncharacterized membrane yes no 0.885 0.733 0.221 5e-28
Q06538782 Uncharacterized membrane yes no 0.939 0.789 0.221 2e-25
Q09766 871 Uncharacterized membrane no no 0.920 0.694 0.223 2e-22
O43022 865 Uncharacterized protein C no no 0.923 0.701 0.227 1e-20
Q12252 991 Phosphate metabolism prot no no 0.945 0.626 0.225 4e-20
Q3TWI9832 Transmembrane protein 63B yes no 0.726 0.573 0.2 1e-17
Q5T3F8832 Transmembrane protein 63B yes no 0.726 0.573 0.198 3e-17
Q03516 953 Uncharacterized protein R no no 0.802 0.552 0.217 7e-17
O94886807 Transmembrane protein 63A no no 0.834 0.679 0.212 2e-16
Q5R826807 Transmembrane protein 63A yes no 0.841 0.685 0.209 3e-16
>sp|Q09809|YAB9_SCHPO Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=3 SV=2 Back     alignment and function desciption
 Score =  126 bits (317), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 155/700 (22%), Positives = 280/700 (40%), Gaps = 118/700 (16%)

Query: 36  VYVPRLLAKGSSNRRRRFNLEMLIPSA-GWVSRAWKHSEEDLLESSGLDAVVFMRVITFS 94
           +Y PR   +G        NL  L  S   W+       ++ +   +GLD  VF+      
Sbjct: 49  LYAPRTTIEG-------LNLPTLSSSYYKWLMDLVNIPDDVVQNCAGLDGYVFLLFFKMG 101

Query: 95  LKVFLFAGIIGIFVILPVNAG--GTEIYEIDFADLPNNSLDVFT---------------- 136
           +K   FA ++G+ +I+PVN    G     I  + +P  S   F+                
Sbjct: 102 IKFLSFASLLGVLIIMPVNKHFRGDAFGNITLS-MPAKSEYFFSSPLVKKSIVQSPIIAN 160

Query: 137 ----------------ISNVNR-------GSHRLWVHFGAVYLVTIFVCYLLYSEYKYIC 173
                           I N++        G   L+++    Y ++IF+ Y+L+S  K I 
Sbjct: 161 GSELNVGVLGPSLFNPIGNLSDIPGLPQPGDGFLYLYVLFTYFISIFLLYVLFSSTKSIA 220

Query: 174 VKRMDYFYSSKPQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNL 233
             R  Y  + + +    TV +  +P    ST  + ++ +F +    +  S ++    S +
Sbjct: 221 DIRQSYL-ARQNRLTDRTVFISGLPNELCST--ENLKAYFDKLDVGSIDSLSICRNYSYM 277

Query: 234 CRLMDYAKKLYGRL-----------------------------IHLQSDSNQ------EK 258
             L+    K   +L                               L+S   Q      + 
Sbjct: 278 DILLSKKSKYVKKLEKYWSIYLSNCKKLGISTLPPSNYLSPNRAELESTPEQLLEVPWQH 337

Query: 259 NQ-------------QRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSR 305
           +Q              +K+D +D Y  +L  I +     RS           AF++F+S 
Sbjct: 338 HQCHPLIKTHFFGIFGQKIDAIDFYSAKLYKISQQIENARS---FDYPTTGQAFITFESM 394

Query: 306 YGAAIAFHMQ-QSTNPTDWLLEQAPEPNDVYWPFFSASFMRRW---ISKIVVVVACILLT 361
             A I       S +     +E AP  ND+ W     +++ RW        + +   ++ 
Sbjct: 395 ATAQIVAQTHIDSKSLMGLHIELAPAANDIQW---HNTYIGRWHKFFQGWFITLVTFMII 451

Query: 362 ILFLIPVLVVQGLTNLNQLE-IWFPFLKSILTIKFVSQVVTGYLPNLILLVFLKIVPPVM 420
           +L+ +PV  +    NL+ +  +W    + I  + F++ ++  +LP L+  +F+ I P + 
Sbjct: 452 LLWTVPVGAIAVFINLDTIRRLWPELGRMIEDLPFLNSLLRTFLPTLVYSLFISISPFLF 511

Query: 421 EFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSV-LYQLNIVLDPKNIPSRLG 479
            +LSS+QG  S ++ +  A  K   ++  N F   V +GS  +++L    D  +    L 
Sbjct: 512 RWLSSMQGLSSRAEEEIYAVGKNYAYLFVNFFLVYVIAGSTSIWEL--AKDTTSFAHFLA 569

Query: 480 VAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSK--DDDFEVP-AIHYH 536
             +P QA FFI  +V  G      +L Q+  L    + + F         FE P +    
Sbjct: 570 NRLPHQAQFFIDLIVLQGIGMFPLKLIQLGKLSSYFVRRSFVPYSIASKKFETPDSFSVG 629

Query: 537 SELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPIV 596
             LP+ +   L+ + Y  ++PLIL F LIY  + +++Y+ + I   E    + G+ W  +
Sbjct: 630 IFLPQPMFIMLICLCYSIISPLILVFGLIYFIIGFLVYKYELIYQMEHPQHSTGELWSTI 689

Query: 597 HNSMIFSLVLMHAIAVGIFTIKKLSTASTLIFPLPVLTLL 636
              MIF  V+M    +G+ +++K    ST+IFPL   T++
Sbjct: 690 FLRMIFGCVIMQLTMMGLMSLRKAYWLSTVIFPLLCFTVI 729

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q06538|YL241_YEAST Uncharacterized membrane protein YLR241W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR241W PE=1 SV=1 Back     alignment and function description
>sp|Q09766|YA7D_SCHPO Uncharacterized membrane protein C24H6.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.13 PE=1 SV=1 Back     alignment and function description
>sp|O43022|YGV8_SCHPO Uncharacterized protein C354.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC354.08c PE=4 SV=1 Back     alignment and function description
>sp|Q12252|PHM7_YEAST Phosphate metabolism protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHM7 PE=1 SV=1 Back     alignment and function description
>sp|Q3TWI9|TM63B_MOUSE Transmembrane protein 63B OS=Mus musculus GN=Tmem63b PE=1 SV=1 Back     alignment and function description
>sp|Q5T3F8|TM63B_HUMAN Transmembrane protein 63B OS=Homo sapiens GN=TMEM63B PE=1 SV=1 Back     alignment and function description
>sp|Q03516|RSN1_YEAST Uncharacterized protein RSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSN1 PE=1 SV=1 Back     alignment and function description
>sp|O94886|TM63A_HUMAN Transmembrane protein 63A OS=Homo sapiens GN=TMEM63A PE=2 SV=3 Back     alignment and function description
>sp|Q5R826|TM63A_PONAB Transmembrane protein 63A OS=Pongo abelii GN=TMEM63A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query657
255562966710 conserved hypothetical protein [Ricinus 0.995 0.921 0.779 0.0
224098930714 predicted protein [Populus trichocarpa] 0.996 0.917 0.741 0.0
225464071715 PREDICTED: uncharacterized membrane prot 0.996 0.916 0.731 0.0
224112181712 predicted protein [Populus trichocarpa] 0.996 0.919 0.730 0.0
356499845698 PREDICTED: uncharacterized membrane prot 0.995 0.936 0.706 0.0
359489011717 PREDICTED: uncharacterized membrane prot 0.995 0.912 0.655 0.0
449435324712 PREDICTED: uncharacterized membrane prot 0.996 0.919 0.681 0.0
449478649712 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.996 0.919 0.680 0.0
297841675711 hypothetical protein ARALYDRAFT_339179 [ 0.996 0.921 0.636 0.0
145337329711 Early-responsive to dehydration stress p 0.996 0.921 0.627 0.0
>gi|255562966|ref|XP_002522488.1| conserved hypothetical protein [Ricinus communis] gi|223538373|gb|EEF39980.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1061 bits (2743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/661 (77%), Positives = 588/661 (88%), Gaps = 7/661 (1%)

Query: 1   MLVSALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKGSSNRRRRFNLEMLIP 60
           MLVSALLTS+GINSGLCVLFF  YSILRKQPSNYEVY PRLLA+G+S RR RFNLE LIP
Sbjct: 1   MLVSALLTSLGINSGLCVLFFVFYSILRKQPSNYEVYAPRLLAEGNSKRRSRFNLERLIP 60

Query: 61  SAGWVSRAWKHSEEDLLESSGLDAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIY 120
           S GW+S+AWK SEED+L SSGLDAVVFMR+ITFSLKVF FAGIIGIFV+LPVN  GT++ 
Sbjct: 61  SPGWISKAWKLSEEDILLSSGLDAVVFMRLITFSLKVFSFAGIIGIFVLLPVNCLGTQLQ 120

Query: 121 EIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIFVCYLLYSEYKYICVKRMDYF 180
           +IDFADL +NSLDVFTISNVN GS  LW+HF AVY+++IF+CYLLY+EYKYI  KR+ YF
Sbjct: 121 KIDFADLSSNSLDVFTISNVNYGSKWLWMHFCAVYMISIFICYLLYNEYKYISSKRIAYF 180

Query: 181 YSSKPQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYA 240
           YSSKPQPHQFT+LVR IPVS GS+I +TVE FF E+HPTTYLSH V+ ++SNL  L+  A
Sbjct: 181 YSSKPQPHQFTILVRGIPVSVGSSISETVERFFTEYHPTTYLSHMVVRRSSNLRSLVTEA 240

Query: 241 KKLYGRLIHLQSDSNQEKNQQ-----RKVDLVDHYGKRLENIEENSRLERSEVSMARHEL 295
           KKLY RL+HLQS+ + +K ++       VDLVDHY K+LE++E+N +LE+S++S    E 
Sbjct: 241 KKLYTRLLHLQSEPSHQKYRRIGLFGENVDLVDHYEKKLEDVEQNVKLEQSDLSFG-EET 299

Query: 296 QAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVV 355
           +AAFVSFKSRYGAA+AFH+QQS NPT W+ EQAPEP+DVYWPFFS+SFMRRWISK+VVVV
Sbjct: 300 RAAFVSFKSRYGAAVAFHLQQSVNPTQWVTEQAPEPDDVYWPFFSSSFMRRWISKLVVVV 359

Query: 356 ACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILTIKFVSQVVTGYLPNLILLVFLKI 415
           ACILLTILFLIPV+VVQGLTNL+QLEIWFPFLKSILTI FVSQV+TGYLP+LIL +FLKI
Sbjct: 360 ACILLTILFLIPVVVVQGLTNLSQLEIWFPFLKSILTITFVSQVITGYLPSLILQLFLKI 419

Query: 416 VPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVLDPKNIP 475
           VPP+MEFLSSIQGYISHSDI+KSACNKVLWF IWNIFFATVFSGSVLYQ+NI LDPKNIP
Sbjct: 420 VPPIMEFLSSIQGYISHSDIEKSACNKVLWFTIWNIFFATVFSGSVLYQVNIFLDPKNIP 479

Query: 476 SRLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDDFEVPAIHY 535
           ++L V+VPAQASFF+AYVVTSGWT  SSELF+I PLICSL ++   K+ DD+ EVP+I Y
Sbjct: 480 AKLAVSVPAQASFFVAYVVTSGWTSTSSELFRIIPLICSLATR-CCKNPDDELEVPSIAY 538

Query: 536 HSELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPI 595
           H ++PRIL FGLLGITYFFLAPLILPFLL+YLCLAYII+RNQF+NVY PKYETAGKFWPI
Sbjct: 539 HKDIPRILFFGLLGITYFFLAPLILPFLLVYLCLAYIIFRNQFMNVYAPKYETAGKFWPI 598

Query: 596 VHNSMIFSLVLMHAIAVGIFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFLPNFIAYPAE 655
           VHNSMIFSLVLMHAIA+GIFT+KKLSTASTLIFPLPVLTLLFNEYCRKRFLP FIAY AE
Sbjct: 599 VHNSMIFSLVLMHAIAIGIFTLKKLSTASTLIFPLPVLTLLFNEYCRKRFLPIFIAYSAE 658

Query: 656 V 656
           V
Sbjct: 659 V 659

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224098930|ref|XP_002311322.1| predicted protein [Populus trichocarpa] gi|222851142|gb|EEE88689.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225464071|ref|XP_002269926.1| PREDICTED: uncharacterized membrane protein C2G11.09 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112181|ref|XP_002316110.1| predicted protein [Populus trichocarpa] gi|222865150|gb|EEF02281.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356499845|ref|XP_003518746.1| PREDICTED: uncharacterized membrane protein YLR241W-like [Glycine max] Back     alignment and taxonomy information
>gi|359489011|ref|XP_002278752.2| PREDICTED: uncharacterized membrane protein YLR241W-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449435324|ref|XP_004135445.1| PREDICTED: uncharacterized membrane protein YLR241W-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449478649|ref|XP_004155380.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized membrane protein YLR241W-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297841675|ref|XP_002888719.1| hypothetical protein ARALYDRAFT_339179 [Arabidopsis lyrata subsp. lyrata] gi|297334560|gb|EFH64978.1| hypothetical protein ARALYDRAFT_339179 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145337329|ref|NP_177104.2| Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana] gi|334183760|ref|NP_001185356.1| Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana] gi|332196805|gb|AEE34926.1| Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana] gi|332196806|gb|AEE34927.1| Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query657
TAIR|locus:2007126711 AT1G69450 [Arabidopsis thalian 0.996 0.921 0.601 2.8e-215
TAIR|locus:2102117703 HYP1 "hypothetical protein 1" 0.990 0.926 0.572 6.2e-204
TAIR|locus:2201876 762 AT1G10090 "AT1G10090" [Arabido 0.993 0.856 0.401 3.3e-134
TAIR|locus:2031735 806 AT1G32090 "AT1G32090" [Arabido 0.899 0.733 0.337 4.7e-103
TAIR|locus:2096991712 AT3G54510 [Arabidopsis thalian 0.980 0.904 0.353 1.3e-102
TAIR|locus:2089850756 AT3G21620 "AT3G21620" [Arabido 0.898 0.780 0.322 1.4e-101
TAIR|locus:2008860771 AT1G11960 "AT1G11960" [Arabido 0.911 0.776 0.322 8.2e-99
TAIR|locus:2140210785 AT4G02900 [Arabidopsis thalian 0.898 0.751 0.324 8.2e-99
TAIR|locus:5049560931041 RXW8 [Arabidopsis thaliana (ta 0.748 0.472 0.401 4.5e-98
TAIR|locus:2120673771 AT4G22120 [Arabidopsis thalian 0.933 0.795 0.329 6.6e-97
TAIR|locus:2007126 AT1G69450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2080 (737.3 bits), Expect = 2.8e-215, P = 2.8e-215
 Identities = 395/657 (60%), Positives = 500/657 (76%)

Query:     1 MLVSALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKGSSNRRRRFNLEMLIP 60
             ML+SALL SVGINS LCVL F LYS+LRKQP NYEV++PR LA G+  RRR   +   IP
Sbjct:     1 MLLSALLMSVGINSCLCVLLFILYSVLRKQPRNYEVFLPRRLANGTYKRRRN-KVARYIP 59

Query:    61 SAGWVSRAWKHSEEDLLESSGLDAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIY 120
             S  W+ ++W+ +E++L+ESSGLD VVFMR+ITFSLKVFLFAGIIG+FV+LPVN  G ++ 
Sbjct:    60 SLKWIWKSWRPTEKELMESSGLDGVVFMRMITFSLKVFLFAGIIGVFVLLPVNCFGDQLT 119

Query:   121 EIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIFVCYLLYSEYKYICVKRMDYF 180
              ID+AD   NSLD+F+++N+   S  LWVHFGA+YLVT+FVC LLY E++YI +KR+++F
Sbjct:   120 VIDYADWSANSLDLFSVANLKVRSQWLWVHFGAIYLVTVFVCCLLYFEFRYIALKRIEHF 179

Query:   181 YSSKPQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYA 240
             YSSKP+P QFT+LVR+IP S GS++ DTV+ FF E H +TY SH VIH+TS L  ++D A
Sbjct:   180 YSSKPKPEQFTILVRNIPSSDGSSVSDTVDRFFGENHSSTYFSHVVIHRTSKLRSVVDKA 239

Query:   241 KKLYGRLIHLQS-DSNQEKNQQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAF 299
             KKLY  + H +       +   RK +   HY   L+ +E+N RL ++EVS    E++AAF
Sbjct:   240 KKLYKEVKHKKPVKKTPMRFFSRKDNTEGHYESVLQEMEQNIRLGQAEVSAPGKEVRAAF 299

Query:   300 VSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVVACIL 359
             VSFKSRYGAA A HM QS NPT WL E APEP+DV+WPFFSASFM++W++KI+VV AC+L
Sbjct:   300 VSFKSRYGAATALHMPQSINPTYWLTEPAPEPHDVHWPFFSASFMQKWLAKILVVFACLL 359

Query:   360 LTILFLIPVLVVQGLTNLNQLEIWFPFLKSILTIKFVSQVVTGYLPNLILLVFLKIVPPV 419
             LTILFL+PV++VQGLTNL  LE  FPFL  IL++K VSQ++TGYLP+LIL   LK+VPP 
Sbjct:   360 LTILFLVPVVLVQGLTNLPALEFMFPFLSLILSMKVVSQIITGYLPSLILQTSLKVVPPT 419

Query:   420 MEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVLDPKNIPSRLG 479
             MEFLSSIQG+I HSDIQKSACNKV+WF IWN+FFATVFSGS  Y+L+++LDPK IP +L 
Sbjct:   420 MEFLSSIQGHICHSDIQKSACNKVIWFTIWNVFFATVFSGSAFYKLSVILDPKQIPLKLA 479

Query:   480 VAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDDFEVPAIHYHSEL 539
             VAVPAQASFFIAYVVT+GWT   +ELF++ P + S I + F  S +++F VP + YH + 
Sbjct:   480 VAVPAQASFFIAYVVTTGWTDTLTELFRVVPFMVSYIKRSFEPSDENEFVVPPMRYHRDT 539

Query:   540 PRILLFGLLGITYFXXXXXXXXXXXXXXXXXXXXXRNQFINVYEPKYETAGKFWPIVHNS 599
             PR+L FGLLGITYF                     RNQF+NVY PK++T G FWP++H +
Sbjct:   540 PRVLFFGLLGITYFFLAPLILPFILLYFILAYIIYRNQFMNVYAPKFDTGGMFWPMIHYT 599

Query:   600 MIFSLVLMHAIAVGIFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFLPNFIAYPAEV 656
             MIFSLVLM AIA+G+F +KK+  A+ L+ PLPV TLLFNE+CRKRF+P F  YPAEV
Sbjct:   600 MIFSLVLMQAIAIGLFALKKMELATYLLVPLPVFTLLFNEFCRKRFMPIFTDYPAEV 656
GO:0005886 "plasma membrane" evidence=ISM
GO:0016020 "membrane" evidence=IEA
TAIR|locus:2102117 HYP1 "hypothetical protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201876 AT1G10090 "AT1G10090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031735 AT1G32090 "AT1G32090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096991 AT3G54510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089850 AT3G21620 "AT3G21620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008860 AT1G11960 "AT1G11960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2140210 AT4G02900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956093 RXW8 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120673 AT4G22120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query657
pfam02714325 pfam02714, DUF221, Domain of unknown function DUF2 1e-102
COG5594827 COG5594, COG5594, Uncharacterized integral membran 5e-70
pfam13967151 pfam13967, RSN1_TM, Late exocytosis, associated wi 2e-42
>gnl|CDD|190398 pfam02714, DUF221, Domain of unknown function DUF221 Back     alignment and domain information 
 Score =  315 bits (809), Expect = e-102
 Identities = 116/325 (35%), Positives = 177/325 (54%), Gaps = 7/325 (2%)

Query: 298 AFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVVAC 357
           AFV+FKS+  A +A    Q  NP  W    APEP D+ W   S S   RW+ +++V +  
Sbjct: 1   AFVTFKSQAAAQMAAQALQHHNPLKWPTYLAPEPRDIIWENLSLSRWERWLRRLIVNLLL 60

Query: 358 ILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILTI-KFVSQVVTGYLPNLILLVFLKIV 416
            LL I + IPV  V  L+NL  L   +PFLK IL +   +  +VTG LP L+L + + ++
Sbjct: 61  FLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILDLPPVLLGLVTGLLPTLLLSLLMALL 120

Query: 417 PPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVLD-PKNIP 475
           P ++ FLS +QG+ S SD++ S  +K   F++ N+F     + +    +  ++D P +IP
Sbjct: 121 PIILRFLSKLQGHPSRSDVELSVQSKYFAFLVVNVFLVVTLASTASSLITEIIDNPTSIP 180

Query: 476 SRLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDDFE-----V 530
           + L   +P  ++FFI+Y++  G +G + EL Q+ PLI   I + F      D        
Sbjct: 181 TLLATNLPKASNFFISYILLQGLSGAAGELLQLGPLILYYIRRKFLDKTPRDKWERYTTP 240

Query: 531 PAIHYHSELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAG 590
           P+  Y +  P  LL   +G+ Y  +APLILPF L+Y  L Y +Y+ Q + VY  KYE+ G
Sbjct: 241 PSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFGLGYFVYKYQLLYVYVTKYESGG 300

Query: 591 KFWPIVHNSMIFSLVLMHAIAVGIF 615
            FWP   N ++  L L     +G+F
Sbjct: 301 LFWPRALNRLLVGLYLFQLCLIGLF 325

This family consists of hypothetical transmembrane proteins none of which have any function, the aligned region is at 538 residues at maximum length. Length = 325
>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein [Function unknown] Back     alignment and domain information
>gnl|CDD|222479 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 657
COG5594827 Uncharacterized integral membrane protein [Functio 100.0
KOG1134728 consensus Uncharacterized conserved protein [Gener 100.0
PF02714325 DUF221: Domain of unknown function DUF221; InterPr 100.0
PF13967157 RSN1_TM: Late exocytosis, associated with Golgi tr 100.0
PF04547452 Anoctamin: Calcium-activated chloride channel; Int 99.06
PF1470385 DUF4463: Domain of unknown function (DUF4463) 97.98
KOG2513647 consensus Protein required for meiotic chromosome 97.92
TIGR01659346 sex-lethal sex-lethal family splicing factor. This 96.52
PLN03134144 glycine-rich RNA-binding protein 4; Provisional 96.06
PLN03120260 nucleic acid binding protein; Provisional 95.85
PLN03121243 nucleic acid binding protein; Provisional 95.71
TIGR01661352 ELAV_HUD_SF ELAV/HuD family splicing factor. These 95.53
KOG0149247 consensus Predicted RNA-binding protein SEB4 (RRM 95.38
KOG0144510 consensus RNA-binding protein CUGBP1/BRUNO (RRM su 95.36
TIGR01628562 PABP-1234 polyadenylate binding protein, human typ 95.35
PF1425970 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or 95.22
PF0007670 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or 95.19
TIGR01648578 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein 94.91
KOG0122270 consensus Translation initiation factor 3, subunit 94.25
TIGR01661352 ELAV_HUD_SF ELAV/HuD family splicing factor. These 93.97
TIGR01659346 sex-lethal sex-lethal family splicing factor. This 93.82
KOG0145360 consensus RNA-binding protein ELAV/HU (RRM superfa 92.71
TIGR01628562 PABP-1234 polyadenylate binding protein, human typ 92.55
PF0405997 RRM_2: RNA recognition motif 2; InterPro: IPR00720 92.45
TIGR01648578 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein 92.4
KOG0125376 consensus Ataxin 2-binding protein (RRM superfamil 92.39
smart0036272 RRM_2 RNA recognition motif. 92.11
KOG4211510 consensus Splicing factor hnRNP-F and related RNA- 91.57
KOG4206221 consensus Spliceosomal protein snRNP-U1A/U2B [RNA 91.2
TIGR01645612 half-pint poly-U binding splicing factor, half-pin 89.94
cd0059074 RRM RRM (RNA recognition motif), also known as RBD 89.27
KOG2514 861 consensus Uncharacterized conserved protein [Funct 89.21
TIGR01622457 SF-CC1 splicing factor, CC1-like family. A homolog 88.64
KOG0127678 consensus Nucleolar protein fibrillarin NOP77 (RRM 88.36
TIGR01649481 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor 86.88
TIGR01649481 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor 86.02
TIGR01642509 U2AF_lg U2 snRNP auxilliary factor, large subunit, 85.91
TIGR01622457 SF-CC1 splicing factor, CC1-like family. A homolog 84.55
TIGR01645 612 half-pint poly-U binding splicing factor, half-pin 84.48
KOG0117506 consensus Heterogeneous nuclear ribonucleoprotein 83.42
PF1389356 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or 82.57
PF07810111 TMC: TMC domain; InterPro: IPR012496 These sequenc 80.4
>COG5594 Uncharacterized integral membrane protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=7.9e-116  Score=950.66  Aligned_cols=640  Identities=28%  Similarity=0.464  Sum_probs=585.1

Q ss_pred             cHhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCceeeccccccCCCC-CccccCccccccCcccchhHhhcCCHHHHHHhc
Q 006191            2 LVSALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKGSS-NRRRRFNLEMLIPSAGWVSRAWKHSEEDLLESS   80 (657)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~F~~lR~~~~~~~iY~pr~~~~~~~-~~~~~~~~~~~~~~~~Wi~~~~~~~d~~i~~~~   80 (657)
                      +.+++.|++.+++.++++++++|++||+|  .+++|+||+..++.+ ++|.    +.+.|+|||+.++++++|+.+++++
T Consensus        20 s~~~~~t~l~f~~~~~~~~l~~f~iLR~r--~k~lY~pr~~~~~~~~~~P~----~~~ss~~gWl~~L~~i~d~~~l~~a   93 (827)
T COG5594          20 STSAVITQLVFAGLIFLVFLILFLILRKR--WKRLYAPRTNFDGQNECLPE----PNPSSYWGWLEPLVKIPDEFLLQYA   93 (827)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhHhcCcceeecCCCcccCC----CCccchHHHHHHHHhCCHHHHHHHc
Confidence            47899999999999999999999999976  799999999988765 2222    2478999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCccccccCCCCCCCCccccccccCCCCchHHHHHHHHHHHHHH
Q 006191           81 GLDAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIF  160 (657)
Q Consensus        81 GlDa~~flrflk~~~~~f~~~~~~~~~iLlPvn~~~~~~~~~~~~~~~~~~l~~~Ti~Ni~~~s~~lw~h~i~~~~~~~~  160 (657)
                      |+|||+||||+|||++++++.|+++++||+|||++.++..+  +.....++++++|++|+++ ++++|+|++.+|++.++
T Consensus        94 GlD~y~fLrflkm~~~~~~i~sl~~ipIL~Pvn~~~~~~~~--gn~~s~s~l~~Ls~~Nv~~-~n~~~aHvf~~~~f~~~  170 (827)
T COG5594          94 GLDGYFFLRFLKMLIKLLFILSLILIPILLPVNYHFQKATN--GNSDSESGLDKLSISNVSP-SNRLYAHVFLSWFFFGY  170 (827)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHhHEeeeeeeccccccc--CCccchhhhhHhhhhcccC-CCceeeeeehhHHHHHH
Confidence            99999999999999999999999999999999987754432  1112468999999999986 78999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCC---------CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccc
Q 006191          161 VCYLLYSEYKYICVKRMDYFYSSKP---------QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTS  231 (657)
Q Consensus       161 ~~~~l~~e~~~~~~~R~~~l~~~~~---------~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~  231 (657)
                      ++|.+++|++.+..+||++++++.+         +.++|||+++++|.+..+  .+++.++|++...+++.+..+|+|.+
T Consensus       171 vlfii~~el~~y~~lr~a~~~~p~y~qs~~~~~~~~ssRTvlis~LP~~~~~--~e~L~~~~~kl~~~~i~~~~l~~~~~  248 (827)
T COG5594         171 VLFIIFRELRFYVVLRQAYLRSPLYQQSLLTLQNNLSSRTVLISGLPSELRS--DEELKELFDKLKVGEIDSDVLCRDLG  248 (827)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccHHHHHHHHhhccCCCCceEEeecCChhhcC--chhHHHHHhhcCeeeeccchhhhhhH
Confidence            9999999999999999999999852         348999999999985443  24589999999888888889999999


Q ss_pred             hHHHHHHHHHHHHHHHhhh---------c-------cC--------------------CCCCC--C--------CCccCC
Q 006191          232 NLCRLMDYAKKLYGRLIHL---------Q-------SD--------------------SNQEK--N--------QQRKVD  265 (657)
Q Consensus       232 ~l~~l~~~~~~~~~~le~~---------~-------~~--------------------~~~rP--k--------~g~kvd  265 (657)
                      .++++.++|++..+|+|..         +       ++                    ..+||  |        .|||||
T Consensus       249 ~l~~l~k~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~~~~i~gKkVd  328 (827)
T COG5594         249 TLQELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKKLNKGIFGKKVD  328 (827)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccchhhhhhhhhhhccceec
Confidence            9999999999998888721         0       00                    02377  1        589999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCCCCce-eccCCCCCCcccCCCCCchH
Q 006191          266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWL-LEQAPEPNDVYWPFFSASFM  344 (657)
Q Consensus       266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~~~~~~-v~~AP~P~DIiW~NL~~~~~  344 (657)
                      +|||+++|+.+++++|++.|+..++.. .+++|||||+|+..||+|+|.+..+++.... ++.||+|+||+|+|+..+++
T Consensus       329 aI~y~s~~l~~l~~~i~~~r~~~~~~t-~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi~W~Nl~ls~~  407 (827)
T COG5594         329 AIDYYSAKLTKLDAEIENARKSLYENT-PTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDIIWDNLRLSRK  407 (827)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccC-ccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccccccccchHHHH
Confidence            999999999999999999999876643 3779999999999999999999888886655 99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHhHhhhhhhhhh-hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006191          345 RRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILT-IKFVSQVVTGYLPNLILLVFLKIVPPVMEFL  423 (657)
Q Consensus       345 ~r~~R~~~~~~~~~~l~~~~~iPv~~i~~l~~~~~l~~~~~~l~~~~~-~~~~~~~i~~~lpslil~i~n~llp~i~~~l  423 (657)
                      +|..|++.++++.++++++|++|||+++.++|++++.+.+||++.+.+ .|+++++++|+||++++.+++.++|++++++
T Consensus       408 ~r~~k~~~~ni~~il~II~w~~pVa~v~~i~Nl~~l~~~~p~l~~il~~~~~l~~iltglLptv~~~~l~~ivP~fir~L  487 (827)
T COG5594         408 ERLFKRISANILFILLIILWAFPVAFVGTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSLLMSIVPYFIRWL  487 (827)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHhhhhHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHhHHHHHHH
Confidence            999999999999999999999999999999999999999999999955 5699999999999999999999999999999


Q ss_pred             HHhcCCcchhHHHHHhhhhhHHHHHHHHHHHHhchhhHHHHHHHhc-CCCChHHHHhhhCCcchHHHHHHHHHHhhhhhh
Q 006191          424 SSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVL-DPKNIPSRLGVAVPAQASFFIAYVVTSGWTGIS  502 (657)
Q Consensus       424 s~~eg~~t~S~~~~s~~~k~f~f~~~n~~lv~~l~~~~~~~~~~~~-~~~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~  502 (657)
                      +.+||..|+|+.|..++.|+|.|+++|.|+|.++++++.+.+.+.. +|.+++.++++++|++|+||++|+++||+++++
T Consensus       488 s~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~fss~v~~~~ke~~s~~~llA~~lpk~SnFfi~~iilqgl~~~~  567 (827)
T COG5594         488 SYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLKEPTSIMTLLANNLPKASNFFISYIILQGLSGFP  567 (827)
T ss_pred             HHhcCccchHHHHHHHHhhhhhheeeeehheeeehhHHHHHHHHHhcChHhHHHHHHhccHHHHHHHHHHHHHhcccccc
Confidence            9999999999999999999999999999999999988776666666 899999999999999999999999999999999


Q ss_pred             HHhHhhHHHHHHHhhcccCCCCCCC-----CCCCCcCcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006191          503 SELFQIFPLICSLISKPFTKSKDDD-----FEVPAIHYHSELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQ  577 (657)
Q Consensus       503 ~~ll~~~~l~~~~~~~~~~~~T~r~-----~~~~~f~~~~~y~~~l~~~~i~l~Ys~i~Pli~~~~~~~f~~~y~v~Ky~  577 (657)
                      ++|+|+++|+.+.+..++.++|||+     ..++.|+||..||+.+.+++|+++||+++|+|+.||+++|++.|+++||+
T Consensus       568 ~~LLqi~~Ll~~~vl~kf~~~TpR~k~nr~~~~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf~~v~F~~~ylaykY~  647 (827)
T COG5594         568 GTLLQIVPLLLSLVLGKFKDSTPRQKWNRLETPPSFQFGTVLPQPILLFTITICYSIISPLILLFGAVYFILNYLAYKYN  647 (827)
T ss_pred             hHHHHHHHHHHHHhhhhhcCCChHHHHhhccCCCccccccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988888999996     57899999999999999999999999999999999999999999999999


Q ss_pred             hceeecCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhccccccceehhhHHHHHHHHHHHHhcccccccccCC
Q 006191          578 FINVYEPKYETAGKFWPIVHNSMIFSLVLMHAIAVGIFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFLPNFIAYP  653 (657)
Q Consensus       578 llyvy~~~~es~G~~~~~~~~~~~~~l~~~q~~~~g~~~~~~~~~~~~~~~~l~~~t~~f~~~~~~~f~~~~~~~p  653 (657)
                      ++|+++.++||||++||+|++|+++|+++||+||+|+|++.++|+.+++++|++.+|++||++|+++|.|+..++-
T Consensus       648 l~Yv~~~~~es~G~~w~~al~qiivGl~l~qv~l~glf~~~k~~~ls~~~~p~~~~Tvi~~~~~~~~f~pl~~~ik  723 (827)
T COG5594         648 LIYVSNHSPESGGGYWPRALFQIIVGLYLFQVCLLGLFSLAKGWGLSVLLFPLIVFTVIFHYYFKKMFDPLSKYIK  723 (827)
T ss_pred             hhhccCCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCcceeEeehHHHHHHHHHHHHHHHHhhccccccee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998865554

>KOG1134 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length Back     alignment and domain information
>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport Back     alignment and domain information
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [] Back     alignment and domain information
>PF14703 DUF4463: Domain of unknown function (DUF4463) Back     alignment and domain information
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01659 sex-lethal sex-lethal family splicing factor Back     alignment and domain information
>PLN03134 glycine-rich RNA-binding protein 4; Provisional Back     alignment and domain information
>PLN03120 nucleic acid binding protein; Provisional Back     alignment and domain information
>PLN03121 nucleic acid binding protein; Provisional Back     alignment and domain information
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor Back     alignment and domain information
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only] Back     alignment and domain information
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>PF14259 RRM_6: RNA recognition motif (a Back     alignment and domain information
>PF00076 RRM_1: RNA recognition motif Back     alignment and domain information
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family Back     alignment and domain information
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor Back     alignment and domain information
>TIGR01659 sex-lethal sex-lethal family splicing factor Back     alignment and domain information
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2 Back     alignment and domain information
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family Back     alignment and domain information
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only] Back     alignment and domain information
>smart00362 RRM_2 RNA recognition motif Back     alignment and domain information
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification] Back     alignment and domain information
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification] Back     alignment and domain information
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family Back     alignment and domain information
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability Back     alignment and domain information
>KOG2514 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR01622 SF-CC1 splicing factor, CC1-like family Back     alignment and domain information
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family Back     alignment and domain information
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family Back     alignment and domain information
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>TIGR01622 SF-CC1 splicing factor, CC1-like family Back     alignment and domain information
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family Back     alignment and domain information
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>PF13893 RRM_5: RNA recognition motif Back     alignment and domain information
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query657
2dnz_A95 Probable RNA-binding protein 23; RNA recognition m 97.4
4fxv_A99 ELAV-like protein 1; RNA recognition motif, putati 97.33
2jrs_A108 RNA-binding protein 39; RNA binding motif of RBM39 97.26
2lxi_A91 RNA-binding protein 10; NMR {Homo sapiens} 97.21
3s8s_A110 Histone-lysine N-methyltransferase SETD1A; chromat 97.2
2lkz_A95 RNA-binding protein 5; RRM; NMR {Homo sapiens} 97.19
3p5t_L90 Cleavage and polyadenylation specificity factor S; 97.17
1x5s_A102 Cold-inducible RNA-binding protein; structure geno 97.15
2dgs_A99 DAZ-associated protein 1; RRM domain, structural g 97.1
4a8x_A88 RNA-binding protein with serine-rich domain 1; tra 97.08
3bs9_A87 Nucleolysin TIA-1 isoform P40; RNA recognition mot 97.06
1x5u_A105 Splicing factor 3B subunit 4 (spliceosome associat 97.05
2dgp_A106 Bruno-like 4, RNA binding protein; RRM domain, str 97.04
1whw_A99 Hypothetical protein riken cDNA 1200009A02; RNA re 97.04
2dgv_A92 HnRNP M, heterogeneous nuclear ribonucleoprotein M 97.03
1x5t_A96 Splicing factor 3B subunit 4; structure genomics, 97.02
3mdf_A85 Peptidyl-prolyl CIS-trans isomerase E; RRM domain, 97.02
2cpz_A115 CUG triplet repeat RNA-binding protein 1; RRM doma 96.99
2fy1_A116 RNA-binding motif protein, Y chromosome, family 1 96.99
2dnh_A105 Bruno-like 5, RNA binding protein; RRM domain, RBD 96.99
2do4_A100 Squamous cell carcinoma antigen recognized by T- c 96.99
2x1f_A96 MRNA 3'-END-processing protein RNA15; transcriptio 96.97
2diu_A96 KIAA0430 protein; structural genomics, RRM domain, 96.97
3md1_A83 Nuclear and cytoplasmic polyadenylated RNA-bindin 96.96
2cq3_A103 RNA-binding protein 9; RRM domain, structural geno 96.95
1fxl_A167 Paraneoplastic encephalomyelitis antigen HUD; prot 96.92
4f25_A115 Polyadenylate-binding protein 1; RRM fold, transla 96.91
2e5h_A94 Zinc finger CCHC-type and RNA-binding motif- conta 96.9
2ywk_A95 Putative RNA-binding protein 11; RRM-domain, struc 96.87
2dgo_A115 Cytotoxic granule-associated RNA binding protein 1 96.86
2cph_A107 RNA binding motif protein 19; RNA recognition moti 96.85
2cqc_A95 Arginine/serine-rich splicing factor 10; RNA recog 96.84
2dhg_A104 TRNA selenocysteine associated protein (SECP43); R 96.83
2cq0_A103 Eukaryotic translation initiation factor 3 subunit 96.83
1p27_B106 RNA-binding protein 8A; nuclear protein, mRNA spli 96.83
2dnm_A103 SRP46 splicing factor; RRM domain, RBD, structural 96.81
2div_A99 TRNA selenocysteine associated protein; structural 96.8
1wi8_A104 EIF-4B, eukaryotic translation initiation factor 4 96.8
2cqi_A103 Nucleolysin TIAR; RNA recognition motif, RRM, RNA 96.8
2cqd_A116 RNA-binding region containing protein 1; RNA recog 96.8
3ucg_A89 Polyadenylate-binding protein 2; ferredoxin-like, 96.76
2cqg_A103 TDP-43, TAR DNA-binding protein-43; RNA recognitio 96.75
2la6_A99 RNA-binding protein FUS; structural genomics, nort 96.74
2cqp_A98 RNA-binding protein 12; RNA recognition motif, RRM 96.73
2d9p_A103 Polyadenylate-binding protein 3; RRM domain, struc 96.72
1uaw_A77 Mouse-musashi-1; RNP-type structure, RNA binding p 96.71
3ulh_A107 THO complex subunit 4; nuclear protein, RNA bindin 96.69
1oo0_B110 CG8781-PA, drosophila Y14; RNA recognition motif, 96.69
2khc_A118 Testis-specific RNP-type RNA binding protein; RRM, 96.68
2cqb_A102 Peptidyl-prolyl CIS-trans isomerase E; RNA recogni 96.68
1x4h_A111 RNA-binding protein 28; structural genomics, RRM d 96.68
1p1t_A104 Cleavage stimulation factor, 64 kDa subunit; RNA r 96.68
2cpj_A99 Non-POU domain-containing octamer-binding protein; 96.67
1b7f_A168 Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP 96.65
3s7r_A87 Heterogeneous nuclear ribonucleoprotein A/B; ferre 96.63
1h2v_Z156 20 kDa nuclear CAP binding protein; CAP-binding-co 96.62
2a3j_A127 U1 small nuclear ribonucleoprotein A; computationa 96.62
1x4a_A109 Splicing factor, arginine/serine-rich 1 (splicing 96.61
2kt5_A124 RNA and export factor-binding protein 2; chaperone 96.61
2err_A109 Ataxin-2-binding protein 1; protein-RNA complex, R 96.6
2ki2_A90 SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA 96.6
2dgw_A91 Probable RNA-binding protein 19; RRM domain, struc 96.58
2kxn_B129 Transformer-2 protein homolog beta; SR protein, RR 96.58
2dng_A103 Eukaryotic translation initiation factor 4H; RRM d 96.58
3lqv_A115 PRE-mRNA branch site protein P14; cysless mutant, 96.58
3ex7_B126 RNA-binding protein 8A; protein-RNA complex, mRNA 96.57
2cpf_A98 RNA binding motif protein 19; RNA recognition moti 96.56
1wg5_A104 Heterogeneous nuclear ribonucleoprotein H; structu 96.55
1s79_A103 Lupus LA protein; RRM, alpha/beta, RNA binding pro 96.53
2cpe_A113 RNA-binding protein EWS; RNA recognition motif, RR 96.51
2cpd_A99 Apobec-1 stimulating protein; RNA recognition moti 96.5
2do0_A114 HnRNP M, heterogeneous nuclear ribonucleoprotein M 96.49
2ek1_A95 RNA-binding protein 12; RNA recognition motif, dim 96.48
2mss_A75 Protein (musashi1); RNA-binding domain, RNA bindin 96.48
2dnq_A90 RNA-binding protein 4B; RRM domain,RBD, structural 96.47
1x4e_A85 RNA binding motif, single-stranded interacting pro 96.46
2e44_A96 Insulin-like growth factor 2 mRNA binding protein 96.45
1sjq_A105 Polypyrimidine tract-binding protein 1; babbab mot 96.45
3r27_A100 HnRNP L, heterogeneous nuclear ribonucleoprotein L 96.44
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 96.43
2lmi_A107 GRSF-1, G-rich sequence factor 1; G-rich RNA seque 96.43
2j76_E100 EIF-4B, EIF4B, eukaryotic translation initiation f 96.43
2ytc_A85 PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s 96.41
1wex_A104 Hypothetical protein (riken cDNA 2810036L13); stru 96.41
2hgl_A136 HNRPF protein, heterogeneous nuclear ribonucleopro 96.41
1x5o_A114 RNA binding motif, single-stranded interacting pro 96.37
3nmr_A175 Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl 96.36
3md3_A166 Nuclear and cytoplasmic polyadenylated RNA-bindin 96.36
2cpi_A111 CCR4-NOT transcription complex subunit 4; RNA reco 96.34
3ns6_A100 Eukaryotic translation initiation factor 3 subuni; 96.34
1x4g_A109 Nucleolysin TIAR; structural genomics, RRM domain, 96.34
1iqt_A75 AUF1, heterogeneous nuclear ribonucleoprotein D0; 96.33
1x4f_A112 Matrin 3; structural genomics, RRM domain, NPPSFA, 96.32
2dnp_A90 RNA-binding protein 14; RRM domain, RBD, structura 96.31
2dgx_A96 KIAA0430 protein; RRM domain, structural genomics, 96.28
1why_A97 Hypothetical protein riken cDNA 1810017N16; RNA re 96.28
2dgt_A92 RNA-binding protein 30; RRM domain, structural gen 96.27
2f3j_A177 RNA and export factor binding protein 2; RRM domai 96.26
1wez_A102 HnRNP H', FTP-3, heterogeneous nuclear ribonucleop 96.25
3d2w_A89 TAR DNA-binding protein 43; DP-43 proteinopathy, T 96.24
2nlw_A105 Eukaryotic translation initiation factor 3 subunit 96.23
2cq1_A101 PTB-like protein L; RRM domain, structural genomic 96.21
1x4c_A108 Splicing factor, arginine/serine-rich 1; structura 96.21
2dh8_A105 DAZ-associated protein 1; RRM domain, structural g 96.21
1wf0_A88 TDP-43, TAR DNA-binding protein-43; structural gen 96.2
1u6f_A139 Tcubp1, RNA-binding protein UBP1; trypanosome, mRN 96.18
2dnl_A114 Cytoplasmic polyadenylation element binding protei 96.16
2dha_A123 FLJ20171 protein; RRM domain, structural genomics, 96.15
4f02_A213 Polyadenylate-binding protein 1; mRNA, eukaryotic 96.15
2dis_A109 Unnamed protein product; structural genomics, RRM 96.13
1whx_A111 Hypothetical protein riken cDNA 1200009A02; RNA re 96.13
2i2y_A150 Fusion protein consists of immunoglobin G- binding 96.11
2ad9_A119 Polypyrimidine tract-binding protein 1; RBD, RRM, 96.11
2krb_A81 Eukaryotic translation initiation factor 3 subunit 96.08
2kvi_A96 Nuclear polyadenylated RNA-binding protein 3; RNA- 96.08
2e5j_A97 Methenyltetrahydrofolate synthetase domain contain 96.07
2dgu_A103 Heterogeneous nuclear ribonucleoprotein Q; RRM dom 96.07
2jvr_A111 Nucleolar protein 3; RNA recognition motif, nucleu 96.07
1wg1_A88 KIAA1579 protein, homolog EXC-7; RBD, structural g 96.07
2lea_A135 Serine/arginine-rich splicing factor 2; SR protein 96.06
1wf1_A110 RNA-binding protein RALY; structural genomics, RRM 96.06
2pe8_A105 Splicing factor 45; RRM, protein binding; 2.00A {H 96.04
2qfj_A216 FBP-interacting repressor; protein-DNA complex; HE 96.04
1nu4_A97 U1A RNA binding domain; RNA recognition motif, U1 96.02
2jwn_A124 Embryonic polyadenylate-binding protein 2-B; epabp 96.02
3beg_B115 Splicing factor, arginine/serine-rich 1; kinase, S 96.01
2cpy_A114 RNA-binding protein 12; RRM domain, structural gen 96.0
2dnn_A109 RNA-binding protein 12; RRM domain, RBD, structura 95.97
1x4b_A116 Heterogeneous nuclear ribonucleoproteins A2/B1; st 95.97
2kn4_A158 Immunoglobulin G-binding protein G, splicing FACT 95.95
1x4d_A102 Matrin 3; structural genomics, RRM domain, NPPSFA, 95.94
1l3k_A196 Heterogeneous nuclear ribonucleoprotein A1; nuclea 95.91
3n9u_C156 Cleavage and polyadenylation specificity factor S; 95.91
2rs2_A109 Musashi-1, RNA-binding protein musashi homolog 1; 95.88
2fc8_A102 NCL protein; structure genomics, RRM_1 domain, str 95.87
2la4_A101 Nuclear and cytoplasmic polyadenylated RNA-bindin 95.86
3sde_A261 Paraspeckle component 1; RRM, anti parallel right 95.86
2hvz_A101 Splicing factor, arginine/serine-rich 7; RRM, RNA 95.85
2cpx_A115 Hypothetical protein FLJ11016; RRM domain, structu 95.83
2db1_A118 Heterogeneous nuclear ribonucleoprotein F; RRM dom 95.82
2xnq_A97 Nuclear polyadenylated RNA-binding protein 3; tran 95.81
1rk8_A165 CG8781-PA, CG8781-PA protein; mRNA processing, RRM 95.78
2m2b_A131 RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio 95.75
2cq4_A114 RNA binding motif protein 23; RRM domain, structur 95.69
2hgn_A139 Heterogeneous nuclear ribonucleoprotein F; RNA rec 95.65
2jvo_A108 Nucleolar protein 3; nucleus, phosphorylation, rib 95.59
2cjk_A167 Nuclear polyadenylated RNA-binding protein 4; HRP1 95.58
2wbr_A89 GW182, gawky, LD47780P; DNA-binding protein, RRM, 95.52
1wel_A124 RNA-binding protein 12; structural genomics, NPPSF 95.49
2fc9_A101 NCL protein; structure genomics, RRM_1 domain, str 95.47
2e5g_A94 U6 snRNA-specific terminal uridylyltransferase 1; 95.47
1fj7_A101 Nucleolin RBD1, protein C23; RNP, RRM, RNA binding 95.47
3md3_A166 Nuclear and cytoplasmic polyadenylated RNA-bindin 95.43
2hgm_A126 HNRPF protein, heterogeneous nuclear ribonucleopro 95.43
3smz_A284 Protein raver-1, ribonucleoprotein PTB-binding 1; 95.4
3nmr_A175 Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl 95.39
1b7f_A168 Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP 95.35
2qfj_A216 FBP-interacting repressor; protein-DNA complex; HE 95.31
2adc_A229 Polypyrimidine tract-binding protein 1; RBD, RRM, 95.31
2xs2_A102 Deleted in azoospermia-like; RNA binding protein-R 95.24
2cqh_A93 IGF-II mRNA-binding protein 2 isoform A; RNA recog 95.07
3q2s_C229 Cleavage and polyadenylation specificity factor S; 95.06
1qm9_A198 Polypyrimidine tract-binding protein; ribonucleopr 94.93
3tyt_A205 Heterogeneous nuclear ribonucleoprotein L; ferredo 94.91
1fxl_A167 Paraneoplastic encephalomyelitis antigen HUD; prot 94.91
2cjk_A167 Nuclear polyadenylated RNA-binding protein 4; HRP1 94.86
3ue2_A118 Poly(U)-binding-splicing factor PUF60; RNA recogni 94.8
2voo_A193 Lupus LA protein; RNA-binding protein, RNA recogni 94.77
2g4b_A172 Splicing factor U2AF 65 kDa subunit; protein-RNA c 94.64
1fjc_A96 Nucleolin RBD2, protein C23; RNP, RRM, RNA binding 94.32
2lcw_A116 RNA-binding protein FUS; RRM, nucleic acid binding 93.22
2ghp_A292 U4/U6 snRNA-associated splicing factor PRP24; RNA 94.16
1l3k_A196 Heterogeneous nuclear ribonucleoprotein A1; nuclea 94.14
1sjr_A164 Polypyrimidine tract-binding protein 1; extended b 94.04
4f02_A213 Polyadenylate-binding protein 1; mRNA, eukaryotic 94.01
2yh0_A198 Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli 93.86
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 93.83
2hzc_A87 Splicing factor U2AF 65 kDa subunit; RNA splicing, 93.55
2g4b_A172 Splicing factor U2AF 65 kDa subunit; protein-RNA c 93.42
3pgw_A282 U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c 93.23
3smz_A284 Protein raver-1, ribonucleoprotein PTB-binding 1; 92.99
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 92.91
3egn_A143 RNA-binding protein 40; RNA recognition motif (RRM 92.84
3sde_A261 Paraspeckle component 1; RRM, anti parallel right 92.8
2cq2_A114 Hypothetical protein LOC91801; RRM domain, structu 92.66
2dit_A112 HIV TAT specific factor 1 variant; structural geno 92.53
1jmt_A104 Splicing factor U2AF 35 kDa subunit; RRM, RNA spli 92.29
1qm9_A198 Polypyrimidine tract-binding protein; ribonucleopr 92.0
3tyt_A205 Heterogeneous nuclear ribonucleoprotein L; ferredo 91.81
1fje_B175 Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin 91.8
2yh0_A198 Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli 91.75
2e5i_A124 Heterogeneous nuclear ribonucleoprotein L-like; RR 91.68
3pgw_A282 U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c 91.6
2adc_A229 Polypyrimidine tract-binding protein 1; RBD, RRM, 91.16
3zzy_A130 Polypyrimidine tract-binding protein 1; protein bi 90.22
1fje_B175 Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin 90.16
2ghp_A292 U4/U6 snRNA-associated splicing factor PRP24; RNA 89.51
3s6e_A114 RNA-binding protein 39; ferredoxin-like, structura 88.62
2dhx_A104 Poly (ADP-ribose) polymerase family, member 10 var 87.06
3v4m_A105 Splicing factor U2AF 65 kDa subunit; canonical RNA 87.02
2d9o_A100 DNAJ (HSP40) homolog, subfamily C, member 17; RRM 86.82
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=97.40  E-value=0.00095  Score=55.43  Aligned_cols=83  Identities=13%  Similarity=0.133  Sum_probs=60.7

Q ss_pred             CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191          187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL  266 (657)
Q Consensus       187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~  266 (657)
                      +..+||.|.|||.+.+   .++|+++|+++  |.|.++.+.+|.                                    
T Consensus         3 ~~~~~l~v~nlp~~~t---~~~l~~~f~~~--G~v~~v~i~~~~------------------------------------   41 (95)
T 2dnz_A            3 SGSSGLYVGSLHFNIT---EDMLRGIFEPF--GKIDNIVLMKDS------------------------------------   41 (95)
T ss_dssp             SCCCEEEEESCCTTCC---HHHHHHHHTTT--SCEEEEEEECCS------------------------------------
T ss_pred             CCCcEEEEeCCCCCCC---HHHHHHHHHhc--CCEeEEEEeecC------------------------------------
Confidence            4568999999999766   47899999987  567777765531                                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCCC
Q 006191          267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPND  333 (657)
Q Consensus       267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~D  333 (657)
                                             ...+..+.|||+|++.++|..|.+.++..  +...++|+.|.++.+
T Consensus        42 -----------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   87 (95)
T 2dnz_A           42 -----------------------DTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD   87 (95)
T ss_dssp             -----------------------SSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred             -----------------------CCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence                                   00123689999999999999999876554  345677777665443
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens} Back     alignment and structure
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Back     alignment and structure
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens} Back     alignment and structure
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Back     alignment and structure
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Back     alignment and structure
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Back     alignment and structure
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Back     alignment and structure
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} Back     alignment and structure
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Back     alignment and structure
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Back     alignment and structure
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A* Back     alignment and structure
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Back     alignment and structure
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Back     alignment and structure
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Back     alignment and structure
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Back     alignment and structure
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0 Back     alignment and structure
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Back     alignment and structure
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Back     alignment and structure
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Back     alignment and structure
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Back     alignment and structure
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Back     alignment and structure
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Back     alignment and structure
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Back     alignment and structure
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Back     alignment and structure
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Back     alignment and structure
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Back     alignment and structure
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A Back     alignment and structure
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Back     alignment and structure
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Back     alignment and structure
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} Back     alignment and structure
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Back     alignment and structure
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B Back     alignment and structure
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Back     alignment and structure
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Back     alignment and structure
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Back     alignment and structure
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Back     alignment and structure
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Back     alignment and structure
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A Back     alignment and structure
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Back     alignment and structure
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A Back     alignment and structure
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Back     alignment and structure
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Back     alignment and structure
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Back     alignment and structure
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} Back     alignment and structure
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Back     alignment and structure
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Back     alignment and structure
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Back     alignment and structure
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} Back     alignment and structure
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Back     alignment and structure
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Back     alignment and structure
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Back     alignment and structure
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A Back     alignment and structure
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Back     alignment and structure
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A Back     alignment and structure
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Back     alignment and structure
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Back     alignment and structure
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Back     alignment and structure
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Back     alignment and structure
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Back     alignment and structure
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Back     alignment and structure
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Back     alignment and structure
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} Back     alignment and structure
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Back     alignment and structure
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Back     alignment and structure
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Back     alignment and structure
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens} Back     alignment and structure
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Back     alignment and structure
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Back     alignment and structure
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Back     alignment and structure
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} Back     alignment and structure
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Back     alignment and structure
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Back     alignment and structure
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E Back     alignment and structure
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Back     alignment and structure
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Back     alignment and structure
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Back     alignment and structure
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Back     alignment and structure
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Back     alignment and structure
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Back     alignment and structure
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Back     alignment and structure
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Back     alignment and structure
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Back     alignment and structure
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Back     alignment and structure
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A Back     alignment and structure
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A Back     alignment and structure
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Back     alignment and structure
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Back     alignment and structure
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Back     alignment and structure
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Back     alignment and structure
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Back     alignment and structure
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Back     alignment and structure
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Back     alignment and structure
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A Back     alignment and structure
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Back     alignment and structure
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Back     alignment and structure
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} Back     alignment and structure
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Back     alignment and structure
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 Back     alignment and structure
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Back     alignment and structure
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Back     alignment and structure
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Back     alignment and structure
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Back     alignment and structure
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Back     alignment and structure
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Back     alignment and structure
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A Back     alignment and structure
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Back     alignment and structure
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Back     alignment and structure
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A Back     alignment and structure
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A Back     alignment and structure
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query657
d1b7fa182 Sex-lethal protein {Drosophila melanogaster [TaxId 97.59
d1x5sa190 Cold-inducible RNA-binding protein {Human (Homo sa 97.55
d1b7fa285 Sex-lethal protein {Drosophila melanogaster [TaxId 97.5
d1rk8a_88 RNA-binding protein 8 {Fruit fly (Drosophila melan 97.49
d1h2vz_93 CBP20, 20KDa nuclear cap-binding protein {Human (H 97.47
d2u2fa_85 Splicing factor U2AF 65 KDa subunit {Human (Homo s 97.41
d1l3ka184 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 97.41
d2ghpa386 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 97.38
d1fxla182 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 97.35
d2cq0a190 Eukaryotic translation initiation factor 3 subunit 97.33
d2cqga190 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 97.31
d2cqba189 Peptidyl-prolyl cis-trans isomerase E, N-terminal 97.31
d1x5ua193 Splicing factor 3B subunit 4 {Human (Homo sapiens) 97.31
d1p1ta_104 Cleavage stimulation factor, 64 kda subunit {Human 97.29
d2cpza1102 CUG triplet repeat RNA-binding protein 1 {Human (H 97.28
d1no8a_78 Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 97.28
d2cqia190 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 97.26
d1hd0a_75 Heterogeneous nuclear ribonucleoprotein d0 {Human 97.21
d2cpja186 Non-POU domain-containing octamer-binding protein, 97.21
d1whwa_99 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 97.2
d2b0ga183 Splicesomal U1A protein {Drosophila melanogaster [ 97.16
d1fxla285 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 97.16
d1x4ha198 RNA-binding protein 28 {Mouse (Mus musculus) [TaxI 97.15
d1uawa_77 Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} 97.15
d1whxa_111 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 97.12
d2cqda1103 RNA-binding region containing protein 1 {Human (Ho 97.12
d2ghpa181 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 97.1
d2cq3a193 RNA-binding protein 9 {Human (Homo sapiens) [TaxId 97.1
d1cvja180 Poly(A)-binding protein {Human (Homo sapiens) [Tax 97.0
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 97.0
d2cpfa185 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 96.99
d2cqca183 Arginine/serine-rich splicing factor 10 {Human (Ho 96.96
d1zh5a285 Lupus LA protein {Human (Homo sapiens) [TaxId: 960 96.93
d1cvja289 Poly(A)-binding protein {Human (Homo sapiens) [Tax 96.9
d2cpha194 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 96.89
d1x0fa175 Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s 96.88
d2f9da1114 Pre-mRNA branch site protein p14 {Human (Homo sapi 96.87
d2msta_75 Neural RNA-binding protein Musashi-1 {Mouse (Mus m 96.85
d1x4fa199 Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} 96.84
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 96.83
d1x4ba1103 Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu 96.81
d2adca288 Polypyrimidine tract-binding protein {Human (Homo 96.78
d1wf0a_88 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 96.76
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 96.75
d1nu4a_91 Splicesomal U1A protein {Human (Homo sapiens) [Tax 96.74
d1u6fa1139 RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId 96.72
d2adca1109 Polypyrimidine tract-binding protein {Human (Homo 96.68
d1wf2a_98 Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu 96.65
d1x4ga196 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 96.64
d1fjeb191 Nucleolin {Golden hamster (Mesocricetus auratus) [ 96.62
d2cpia189 E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc 96.6
d1wi8a_104 Eukaryotic translation initiation factor 4B {Human 96.6
d1l3ka279 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 96.59
d3begb187 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 96.52
d2cq1a188 Polypyrimidine tract-binding protein 2, PTBP2 {Hum 96.52
d2cpda186 APOBEC1 stimulating protein {Human (Homo sapiens) 96.51
d2cpea1101 RNA-binding protein EWS {Human (Homo sapiens) [Tax 96.5
d1whya_97 Putative RNA-binding protein 15B, Rbm15b {Mouse (M 96.45
d1x5oa1101 RNA-binding motif, single-stranded-interacting pro 96.44
d2cq4a1101 RNA binding protein 23 {Human (Homo sapiens) [TaxI 96.43
d2cpxa1102 RNA-binding protein 41, RBM41 {Human (Homo sapiens 96.43
d1x4ea172 RNA-binding motif, single-stranded-interacting pro 96.41
d1weza_102 Heterogeneous nuclear ribonucleoprotein H' {Human 96.36
d1wg5a_104 Heterogeneous nuclear ribonucleoprotein H' {Human 96.29
d1x5ta183 Splicing factor 3B subunit 4 {Human (Homo sapiens) 96.2
d1wg1a_88 Probable RNA-binding protein KIAA1579 {Human (Homo 96.14
d1wexa_104 Heterogeneous nuclear ribonucleoprotein L-like {Mo 96.12
d1wg4a_98 Splicing factor, arginine/serine-rich 9 (SFRS9) {M 96.11
d2disa196 Hypothetical protein FLJ20273 {Human (Homo sapiens 96.09
d1weya_104 Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090 95.76
d2cpya1103 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 95.65
d2cqha180 IGF-II mRNA-binding protein 2 isoform A {Human (Ho 95.59
d1x4da189 Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} 95.58
d2adba1108 Polypyrimidine tract-binding protein {Human (Homo 95.32
d2bz2a179 Negative elongation factor E, NELF-E {Human (Homo 95.22
d1fjca_96 Nucleolin {Golden hamster (Mesocricetus auratus) [ 94.99
d1wela1112 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 94.78
d1u1qa_183 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 94.57
d1u1qa_183 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 94.27
d1wi6a175 Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M 92.4
d1u2fa_90 Splicing factor U2AF 65 KDa subunit {Human (Homo s 92.31
d2cq2a1101 Alkylation repair AlkB homolog 8, ALKBH8 {Human (H 91.41
d1wwha181 Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090 90.01
d2dita199 HIV Tat-specific factor 1 {Human (Homo sapiens) [T 89.55
d1owxa_113 Lupus LA protein {Human (Homo sapiens) [TaxId: 960 88.87
d1o0pa_104 Splicing factor U2AF 65 KDa subunit {Human (Homo s 85.02
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_104 U2 83.2
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.59  E-value=6.2e-05  Score=59.24  Aligned_cols=78  Identities=13%  Similarity=0.182  Sum_probs=57.4

Q ss_pred             cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191          188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV  267 (657)
Q Consensus       188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i  267 (657)
                      ++.||.|.|||.+.++   ++|+++|+++  |.|.++.+++|.                                     
T Consensus         1 s~t~l~V~nLp~~~t~---~~l~~~F~~~--G~v~~~~i~~~~-------------------------------------   38 (82)
T d1b7fa1           1 SNTNLIVNYLPQDMTD---RELYALFRAI--GPINTCRIMRDY-------------------------------------   38 (82)
T ss_dssp             CCSEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCEET-------------------------------------
T ss_pred             CCCEEEEeCCCCCCCH---HHHHHHHHHh--CCcceeeeeeec-------------------------------------
Confidence            4568999999997764   7899999988  567776664431                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCC
Q 006191          268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP  329 (657)
Q Consensus       268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP  329 (657)
                                            ...++.|.|||+|.+.++|+.|.+.++...  ...++|+.|.
T Consensus        39 ----------------------~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~   80 (82)
T d1b7fa1          39 ----------------------KTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR   80 (82)
T ss_dssp             ----------------------TTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             ----------------------ccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence                                  001236899999999999999999876543  3456677764
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure