Citrus Sinensis ID: 006199

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------

MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNPEFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNVNVNSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSGRSDQGAKEIRMLVADHPENGENKALPQNGDFGREDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPKATGAADAGMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL

cccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccccHHHHHHHHHHccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccEEEHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEcccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcc

cccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHEccHHHHcHHHHHHHHHHHHHHHHHHEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEHccccccEEEHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEcccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccEEEEEcccccccccccccccccHHHHccccccccccccccccccEEccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccEEEccccccccccccccccccccEEEEccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc

MITWKDLYLVLTAVVPLYVAMILAYGSVrwwkifspdqcsgiNRFVAIFAVPLlsfhfistndpyamnFRFIAADTLQKIIMLFVLGIWtnftkngsLEWMITIFSlstlpntlvMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFkvdsdvvsldgrdfletdaeigddgklHVTVRksnasrrslgpcslpaltprpsnltgaeiyslsssrnptprgsnfnhsdfysmmgvqgfpggrlsnfgpadmysvqssrgptprpsnfeensgqalssprfgfypaqtvptsypapnpefsstltknTSKTVQNNQQQQQQQQQQQQQQNVNvnskanhdakELHMFVwssstspvseggglhvfggtdfgasehsgrsdqGAKEIRMLVAdhpengenkalpqngdfgredfrfagrgegeddqmdhkeggpaelnklgsnstaelhpkatgaadagmgkhmppasVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAalpqgivpfvfakeynvhpaiLSTAVIFGMLIALPITLVYYIVLGL

MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLetdaeigddgklhvtvrksnasrrslgpcslpaltprpsNLTGAEIYslsssrnptprgsnFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNPEFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNVNVNSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSGRSDQGAKEIRMLVADHpengenkalpqngdfgrEDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPKATGAADAGMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL

MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNPEFSSTLTKNTSKTvqnnqqqqqqqqqqqqqqnvnvnSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSGRSDQGAKEIRMLVADHPENGENKALPQNGDFGREDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPKATGAADAGMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL

*ITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIG*******************************************************************************************************************************************************************************MFVW*************HVF******************************************************************************************************VMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVL**

*ITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKML********************VVSLDG**********GDDGKL****************************LTGAE*****************************************************************************************************************************************MFVWS*************************************************************************************************************************LILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL

MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMY**********************LSSPRFGFYPAQTVPTSYPAPNPEFSSTLTK*****************************KANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGA*********GAKEIRMLVADHPENGENKALPQNGDFGREDFRFAGRGE*********EGGPAELNKLGSNSTAELHPKATGAADAGMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL

MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKS****************PRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGF*G*R**************SRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNPEF*****************************************KELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSG*S**GAKEIR*LVADHP********************************************************************MPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		657	2.2.26 [Sep-21-2011]
Q9S7Z8		640	Auxin efflux carrier comp	yes	no	0.968	0.993	0.780	0.0
Q940Y5		619	Auxin efflux carrier comp	no	no	0.939	0.996	0.758	0.0
Q8RWZ6		616	Auxin efflux carrier comp	no	no	0.931	0.993	0.745	0.0
Q67UL3		592	Probable auxin efflux car	yes	no	0.888	0.986	0.627	0.0
Q5SMQ9		595	Auxin efflux carrier comp	no	no	0.885	0.978	0.620	0.0
Q5VP70		618	Probable auxin efflux car	no	no	0.890	0.946	0.620	0.0
Q9C6B8		622	Auxin efflux carrier comp	no	no	0.922	0.974	0.601	0.0
Q9LU77		647	Auxin efflux carrier comp	no	no	0.939	0.953	0.576	0.0
Q651V6		630	Probable auxin efflux car	no	no	0.919	0.958	0.557	0.0
P0C0X5		554	Probable auxin efflux car	no	no	0.821	0.974	0.563	0.0

>sp\|Q9S7Z8\|PIN3_ARATH Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1	Back alignment and function desciption

 Score =  988 bits (2554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/661 (78%), Positives = 556/661 (84%), Gaps = 25/661 (3%)

Query: 1   MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60
           MI+W DLY VLTAV+PLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS
Sbjct: 1   MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61  TNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPL 120
           TN+PYAMN RFIAADTLQKIIML +L +W NFT++GSLEW ITIFSLSTLPNTLVMGIPL
Sbjct: 61  TNNPYAMNLRFIAADTLQKIIMLSLLVLWANFTRSGSLEWSITIFSLSTLPNTLVMGIPL 120

Query: 121 LIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSD 180
           LIAMYGEYSGSLMVQ+VVLQCIIWYTLLLFLFE+RGAKMLIMEQFPETAASIVSFKV+SD
Sbjct: 121 LIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEFRGAKMLIMEQFPETAASIVSFKVESD 180

Query: 181 VVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLS 240
           VVSLDG DFLETDAEIGDDGKLHVTVRKSNASRRS   C  P +TPRPSNLTGAEIYSLS
Sbjct: 181 VVSLDGHDFLETDAEIGDDGKLHVTVRKSNASRRSF--CG-PNMTPRPSNLTGAEIYSLS 237

Query: 241 SSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSG 300
           +    TPRGSNFNHSDFY+MM   GFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEEN  
Sbjct: 238 T----TPRGSNFNHSDFYNMM---GFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENCA 290

Query: 301 QALSSPRFGFYPAQTVPTSYPAPNPEFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNVNV 360
            A SSPRFG+YP      SYPAPNPEFSST T   +K+V  N +     QQ         
Sbjct: 291 MA-SSPRFGYYPGGGA-GSYPAPNPEFSSTTTSTANKSVNKNPKDVNTNQQTTLPTGGKS 348

Query: 361 NSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSGRSDQGAKEIRMLVADH 420
           NS   HDAKELHMFVWSS+ SPVS+  GL+VFGG     ++  GRSDQGAKEIRMLV D 
Sbjct: 349 NS---HDAKELHMFVWSSNGSPVSDRAGLNVFGGAP--DNDQGGRSDQGAKEIRMLVPDQ 403

Query: 421 PENGENKAL--PQNGDFGRE-DFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPK 477
             NGE KA+  P +GDFG E  F FAG+ E  +   D + G    LNKL  NSTA L  K
Sbjct: 404 SHNGETKAVAHPASGDFGGEQQFSFAGKEEEAERPKDAENG----LNKLAPNSTAALQSK 459

Query: 478 -ATGAADAGMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPK 536
              G A+A   K+MPPASVMTRLILIMVWRKLIRNPNTYSSLIGL+W+L+AFRWHV+MPK
Sbjct: 460 TGLGGAEASQRKNMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAFRWHVAMPK 519

Query: 537 IIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIA 596
           II++SISILSDAGLGMAMFSLGLFMALQPK+IACGNSVATF+MAVRFLTGPAVMA A+IA
Sbjct: 520 IIQQSISILSDAGLGMAMFSLGLFMALQPKLIACGNSVATFAMAVRFLTGPAVMAVAAIA 579

Query: 597 VGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLG 656
           +GLRG LL VAIVQAALPQGIVPFVFAKEYNVHPAILST VIFGMLIALPITLVYYI+LG
Sbjct: 580 IGLRGDLLRVAIVQAALPQGIVPFVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILLG 639

Query: 657 L 657
           L
Sbjct: 640 L 640

Acts as a component of the auxin efflux carrier. Seems to be involved in the lateral auxin transport system and mediates tropic growth. Coordinated polar localization of PIN3 is directly regulated by the vesicle trafficking process.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q940Y5\|PIN7_ARATH Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2	Back alignment and function description

>sp\|Q8RWZ6\|PIN4_ARATH Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1	Back alignment and function description

>sp\|Q67UL3\|PIN1C_ORYSJ Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1	Back alignment and function description

>sp\|Q5SMQ9\|PIN1_ORYSJ Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1	Back alignment and function description

>sp\|Q5VP70\|PIN3A_ORYSJ Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1	Back alignment and function description

>sp\|Q9C6B8\|PINI_ARATH Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1	Back alignment and function description

>sp\|Q9LU77\|PIN2_ARATH Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2	Back alignment and function description

>sp\|Q651V6\|PIN2_ORYSJ Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1	Back alignment and function description

>sp\|P0C0X5\|PIN1B_ORYSJ Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		657
21435938		640	PIN1-like auxin transport protein [Popul	0.969	0.995	0.866	0.0
224101827		649	auxin efflux carrier component [Populus	0.984	0.996	0.871	0.0
224108335		645	auxin efflux carrier component [Populus	0.978	0.996	0.857	0.0
31872087		619	PIN1-like protein [Populus tomentosa]	0.937	0.995	0.862	0.0
255570112		646	Auxin efflux carrier component, putative	0.980	0.996	0.858	0.0
225424210		649	PREDICTED: auxin efflux carrier componen	0.978	0.990	0.849	0.0
147774879		627	hypothetical protein VITISV_013835 [Viti	0.945	0.990	0.837	0.0
225424212		629	PREDICTED: auxin efflux carrier componen	0.952	0.995	0.836	0.0
350535242		653	auxin efflux facilitator SlPIN4 [Solanum	0.981	0.987	0.830	0.0
298286392		653	auxin efflux carrier [Solanum lycopersic	0.981	0.987	0.828	0.0

>gi\|21435938\|gb\|AAM54033.1\|AF515434_1 PIN1-like auxin transport protein [Populus tremula x Populus tremuloides]	Back alignment and taxonomy information

 Score = 1148 bits (2970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/660 (86%), Positives = 594/660 (90%), Gaps = 23/660 (3%)

Query: 1   MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60
           MI+W DLY VL+AV+PLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS
Sbjct: 1   MISWNDLYNVLSAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61  TNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPL 120
           TNDPYAMNFRFIAADTLQKIIML  LGIWTNFTKNGSLEWMITIFS+STLPNTLVMGIPL
Sbjct: 61  TNDPYAMNFRFIAADTLQKIIMLIALGIWTNFTKNGSLEWMITIFSVSTLPNTLVMGIPL 120

Query: 121 LIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSD 180
           L AMYG YSGSLMVQ+VVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSD
Sbjct: 121 LTAMYGTYSGSLMVQIVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSD 180

Query: 181 VVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLS 240
           VVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGP S   +TPRPSNLTGAEIYSLS
Sbjct: 181 VVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPGSFSGMTPRPSNLTGAEIYSLS 240

Query: 241 SSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSG 300
           SSRNPTPRGSNFN SDFYSMMGVQGFP GR SN GPAD+YSVQSSRGPTPRPSNFEEN  
Sbjct: 241 SSRNPTPRGSNFNPSDFYSMMGVQGFP-GRHSNLGPADLYSVQSSRGPTPRPSNFEENCA 299

Query: 301 --QALSSPRFGFYPAQTVPTSYPAPNPEFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNV 358
               LSSPRFGFYPAQTVPTSYPAPNPEF+ST+T  T+K    NQQQQ            
Sbjct: 300 PTATLSSPRFGFYPAQTVPTSYPAPNPEFASTVTTKTAK----NQQQQ------------ 343

Query: 359 NVNSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSGRSDQGAKEIRMLVA 418
             NSKANHDAKELHMFVWSSS SPVSEGGGLHVFGGTDFGASE SGRSDQGAKEIRMLVA
Sbjct: 344 --NSKANHDAKELHMFVWSSSASPVSEGGGLHVFGGTDFGASEQSGRSDQGAKEIRMLVA 401

Query: 419 DHPENGENKALP-QNGDFGREDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPK 477
           DHP+NGE K +P Q+GDF  EDF FAGRGEG+D     KE GP  LNKLGS+STAEL PK
Sbjct: 402 DHPQNGETKTIPQQDGDFAGEDFSFAGRGEGDDVDQREKE-GPTGLNKLGSSSTAELQPK 460

Query: 478 ATGAADAGMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKI 537
           A  A D+G  + MPPASVMTRLILIMVWRKLIRNPNTYSSLIGL WSL+AFRWHV MPKI
Sbjct: 461 AAEAPDSGGSRKMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVAFRWHVEMPKI 520

Query: 538 IEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAV 597
           I++SISILSDAGLGMAMFSLGLFMALQPK+IACGNSVATF+MAVRFLTGPAVMAAASIAV
Sbjct: 521 IKQSISILSDAGLGMAMFSLGLFMALQPKLIACGNSVATFAMAVRFLTGPAVMAAASIAV 580

Query: 598 GLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL 657
           GLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYI LGL
Sbjct: 581 GLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIFLGL 640

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224101827\|ref\|XP_002312436.1\| auxin efflux carrier component [Populus trichocarpa] gi\|222852256\|gb\|EEE89803.1\| auxin efflux carrier component [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224108335\|ref\|XP_002314810.1\| auxin efflux carrier component [Populus trichocarpa] gi\|222863850\|gb\|EEF00981.1\| auxin efflux carrier component [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|31872087\|gb\|AAP59843.1\| PIN1-like protein [Populus tomentosa]	Back alignment and taxonomy information

>gi\|255570112\|ref\|XP_002526018.1\| Auxin efflux carrier component, putative [Ricinus communis] gi\|223534665\|gb\|EEF36358.1\| Auxin efflux carrier component, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225424210\|ref\|XP_002284302.1\| PREDICTED: auxin efflux carrier component 3 isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147774879\|emb\|CAN66787.1\| hypothetical protein VITISV_013835 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225424212\|ref\|XP_002284319.1\| PREDICTED: auxin efflux carrier component 3 isoform 4 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|350535242\|ref\|NP_001234184.1\| auxin efflux facilitator SlPIN4 [Solanum lycopersicum] gi\|312983228\|gb\|ADR30410.1\| auxin efflux facilitator SlPIN4 [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|298286392\|dbj\|BAJ09455.1\| auxin efflux carrier [Solanum lycopersicum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		657
TAIR\|locus:2038781		616	PIN4 "AT2G01420" [Arabidopsis	0.476	0.508	0.836	5.8e-233
TAIR\|locus:2035037		622	PIN1 "AT1G73590" [Arabidopsis	0.633	0.668	0.563	1e-193
UNIPROTKB\|Q5SMQ9		595	PIN1 "Auxin efflux carrier com	0.476	0.526	0.662	2.7e-193
TAIR\|locus:2175559		647	EIR1 "AT5G57090" [Arabidopsis	0.951	0.965	0.562	1.9e-179
TAIR\|locus:2013975		640	PIN3 "AT1G70940" [Arabidopsis	0.669	0.687	0.712	2.2e-162
TAIR\|locus:2201225		619	PIN7 "AT1G23080" [Arabidopsis	0.497	0.528	0.842	9.3e-146
TAIR\|locus:2025312		570	PIN6 "AT1G77110" [Arabidopsis	0.452	0.521	0.512	7.2e-139
TAIR\|locus:2147835		367	PIN8 "AT5G15100" [Arabidopsis	0.249	0.446	0.615	3e-95
TAIR\|locus:2171392		351	PIN5 "AT5G16530" [Arabidopsis	0.237	0.444	0.538	3.4e-90
UNIPROTKB\|Q721Y6		303	LMOf2365_0848 "Putative membra	0.219	0.475	0.222	2e-07

TAIR\|locus:2038781 PIN4 "AT2G01420" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1379 (490.5 bits), Expect = 5.8e-233, Sum P(2) = 5.8e-233
 Identities = 277/331 (83%), Positives = 291/331 (87%)

Query:     1 MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60
             MITW DLY VLTAVVPLYVAMILAYGSV+WWKIFSPDQCSGINRFVAIFAVPLLSFHFIS
Sbjct:     1 MITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query:    61 TNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPL 120
             TNDPYAMNFRF+AADTLQKIIML +L +W N TKNGSLEWMITIFSLSTLPNTLVMGIPL
Sbjct:    61 TNDPYAMNFRFVAADTLQKIIMLVLLALWANLTKNGSLEWMITIFSLSTLPNTLVMGIPL 120

Query:   121 LIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSD 180
             LIAMYG Y+GSLMVQVVVLQCIIWYTLLLFLFEYRGAK+LIMEQFPET ASIVSFKV+SD
Sbjct:   121 LIAMYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETGASIVSFKVESD 180

Query:   181 VVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLS 240
             VVSLDG DFLETDAEIG+DGKLHVTVRKSNASRRSL       +TPRPSNLTGAEIYSLS
Sbjct:   181 VVSLDGHDFLETDAEIGNDGKLHVTVRKSNASRRSL------MMTPRPSNLTGAEIYSLS 234

Query:   241 SSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSG 300
             S    TPRGSNFNHSDFYS+MG   FPGGRLSNFGPAD+YSVQSSRGPTPRPSNFEEN+ 
Sbjct:   235 S----TPRGSNFNHSDFYSVMG---FPGGRLSNFGPADLYSVQSSRGPTPRPSNFEENNA 287

Query:   301 QALSSPRFGFYPAQTVPT--SYPAPNPEFSS 329
                    F      +VP   SYPAPNPEFS+
Sbjct:   288 VKYG---FYNNTNSSVPAAGSYPAPNPEFST 315

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048364 "root development" evidence=IMP

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR\|locus:2035037 PIN1 "AT1G73590" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5SMQ9 PIN1 "Auxin efflux carrier component 1" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2175559 EIR1 "AT5G57090" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2013975 PIN3 "AT1G70940" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2201225 PIN7 "AT1G23080" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025312 PIN6 "AT1G77110" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147835 PIN8 "AT5G15100" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2171392 PIN5 "AT5G16530" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q721Y6 LMOf2365_0848 "Putative membrane protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S7Z8	PIN3_ARATH	No assigned EC number	0.7806	0.9680	0.9937	yes	no
Q8RWZ6	PIN4_ARATH	No assigned EC number	0.7458	0.9315	0.9935	no	no
Q67UL3	PIN1C_ORYSJ	No assigned EC number	0.6270	0.8888	0.9864	yes	no
Q940Y5	PIN7_ARATH	No assigned EC number	0.7587	0.9391	0.9967	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		657
TIGR00946		321	TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam	3e-62
pfam03547		321	pfam03547, Mem_trans, Membrane transport protein	9e-59
pfam03547		321	pfam03547, Mem_trans, Membrane transport protein	6e-55
TIGR00946		321	TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam	3e-50
COG0679		311	COG0679, COG0679, Predicted permeases [General fun	1e-16
COG0679		311	COG0679, COG0679, Predicted permeases [General fun	2e-10
pfam11593		381	pfam11593, Med3, Mediator complex subunit 3 fungal	0.002

>gnl\|CDD\|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

 Score =  209 bits (534), Expect = 3e-62
 Identities = 76/161 (47%), Positives = 101/161 (62%), Gaps = 6/161 (3%)

Query: 496 MTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMF 555
            TRL+LI VW+KLI+ P  ++ L+ ++ SL+ F+    MP +I KSISILS A   MA+F
Sbjct: 167 STRLMLIFVWKKLIKFPPLWAPLLSVILSLVGFK----MPGLILKSISILSGATTPMALF 222

Query: 556 SLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQ 615
           SLG  +AL P+ I  G   A  ++ VRFL  PAVMA  S  +GLRG  L VAI+QAALP 
Sbjct: 223 SLG--LALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPG 280

Query: 616 GIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLG 656
           G V  V A EY V   + STAV    +++L    ++ I+LG
Sbjct: 281 GAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILLG 321

[Transport and binding proteins, Other]. Length = 321

>gnl\|CDD\|217608 pfam03547, Mem_trans, Membrane transport protein	Back alignment and domain information

>gnl\|CDD\|217608 pfam03547, Mem_trans, Membrane transport protein	Back alignment and domain information

>gnl\|CDD\|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>gnl\|CDD\|223751 COG0679, COG0679, Predicted permeases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|223751 COG0679, COG0679, Predicted permeases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|221143 pfam11593, Med3, Mediator complex subunit 3 fungal	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		657
PF03547		385	Mem_trans: Membrane transport protein; InterPro: I	100.0
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	100.0
PRK09903		314	putative transporter YfdV; Provisional	100.0
COG0679		311	Predicted permeases [General function prediction o	100.0
KOG2722		408	consensus Predicted membrane protein [Function unk	99.54
TIGR00841		286	bass bile acid transporter. Functionally character	99.01
TIGR00832		328	acr3 arsenical-resistance protein. The first prote	98.59
COG0385		319	Predicted Na+-dependent transporter [General funct	98.58
PF01758		187	SBF: Sodium Bile acid symporter family; InterPro:	98.46
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	97.87
COG0798		342	ACR3 Arsenite efflux pump ACR3 and related permeas	96.88
PF04172		215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	95.21
PRK10711		231	hypothetical protein; Provisional	94.99
PRK04288		232	antiholin-like protein LrgB; Provisional	94.61
TIGR00841		286	bass bile acid transporter. Functionally character	94.53
TIGR00659		226	conserved hypothetical protein TIGR00659. Members	94.52
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	94.37
COG1346		230	LrgB Putative effector of murein hydrolase [Cell e	94.23
PRK03659		601	glutathione-regulated potassium-efflux system prot	92.05
PF03812		314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	91.52
COG2855		334	Predicted membrane protein [Function unknown]	91.16
PF05684		378	DUF819: Protein of unknown function (DUF819); Inte	90.87
PRK03562		621	glutathione-regulated potassium-efflux system prot	90.75
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	87.1
TIGR00698		335	conserved hypothetical integral membrane protein.	86.99
PRK10669		558	putative cation:proton antiport protein; Provision	86.68
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	86.47
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	85.81
KOG2718		371	consensus Na+-bile acid cotransporter [Inorganic i	84.24
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	80.5

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea	Back alignment and domain information

Probab=100.00  E-value=3e-45  Score=389.15  Aligned_cols=380  Identities=30%  Similarity=0.444  Sum_probs=298.8

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhccccChhhhhHHHHHHHHHHhHHHHHHHhhcCCcc-cc-hHHHHHHHH-HHHHHHHHHH
Q 006199           10 VLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPY-AM-NFRFIAADT-LQKIIMLFVL   86 (657)
Q Consensus        10 Il~~ilPIFlLI~LGYla~R~~glfs~e~~~gLnkFV~~~ALPaLLF~~iA~~dl~-~l-~~~filAy~-l~~livfll~   86 (657)
                      +++.++|+|+++++||+++|+ |++++++.++++++|+|+++|||+|..+++.+.. ++ ++.++..+. +..++.++++
T Consensus         2 v~~~i~~i~~ii~~G~~~~~~-~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (385)
T PF03547_consen    2 VFSAILPIFLIILLGYLLGRF-GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG   80 (385)
T ss_pred             cHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999998 9999999999999999999999999999997543 34 544443333 3333444444


Q ss_pred             HHHHHHhcCCCcchhhHhHhh-hccCCcceehHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhcc
Q 006199           87 GIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQF  165 (657)
Q Consensus        87 ~l~ar~~~~~~l~~~aav~~L-ssfsNtgfmGiPLl~alfG~~a~~~lalivvv~~ill~tl~l~L~E~~~a~~~~~~~~  165 (657)
                      +++.++.+.. .++ ...+.+ ++|+|++++|+|++.++||+++..++.++.+++++++|+++..++|.++++....++.
T Consensus        81 ~~~~~~~~~~-~~~-~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~  158 (385)
T PF03547_consen   81 FLLSRLFRLP-KEW-RGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE  158 (385)
T ss_pred             HHHHHhcCCC-ccc-ceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence            4454533322 222 334455 5899999999999999999999999999999999999999999999988887777777


Q ss_pred             cccccccceeeecCcccccCCccccccccccCCCCceEEEEeecCCCcCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 006199          166 PETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNP  245 (657)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (657)
                      +++..+..+.+.|++..+.++.++.++|.++++|++.+...++..++.++..                            
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  210 (385)
T PF03547_consen  159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSV----------------------------  210 (385)
T ss_pred             ccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhh----------------------------
Confidence            7778889999999999999999999999999998776654332221111000                            


Q ss_pred             CCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCccccccCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 006199          246 TPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNP  325 (657)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (657)
                                                               ..+|+                                  
T Consensus       211 -----------------------------------------~~~~~----------------------------------  215 (385)
T PF03547_consen  211 -----------------------------------------STSPS----------------------------------  215 (385)
T ss_pred             -----------------------------------------ccCCc----------------------------------
Confidence                                                     00000                                  


Q ss_pred             CCccccccccccccchhhhHHHHHHHHHhhhhhcccccCCccccchheeeecCCCCCCcCCCCcccccccCCCCCCCCCC
Q 006199          326 EFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNVNVNSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSGR  405 (657)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (657)
                                 .                                               .                    
T Consensus       216 -----------~-----------------------------------------------~--------------------  217 (385)
T PF03547_consen  216 -----------P-----------------------------------------------S--------------------  217 (385)
T ss_pred             -----------c-----------------------------------------------c--------------------
Confidence                       0                                               0                    


Q ss_pred             CccchhhHhHhhcCCCCCCcCCCCCCCCCCCCcccccCCCCCCCCccccccCCCcccccccCCCCccccCcccccccccC
Q 006199          406 SDQGAKEIRMLVADHPENGENKALPQNGDFGREDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPKATGAADAG  485 (657)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (657)
                      ...                        .   .+           .                          +        
T Consensus       218 ~~~------------------------~---~~-----------~--------------------------~--------  225 (385)
T PF03547_consen  218 NST------------------------G---AE-----------Q--------------------------K--------  225 (385)
T ss_pred             ccc------------------------h---hh-----------h--------------------------h--------
Confidence            000                        0   00           0                          0        


Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccch
Q 006199          486 MGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQP  565 (657)
Q Consensus       486 ~~~~~p~~~~~~~~il~~vlkkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~  565 (657)
                             ...+++..+++.+++.++||+++|+++|+++++++....+.+|.++.++++++|++++|++||++|+.|+..+
T Consensus       226 -------~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~  298 (385)
T PF03547_consen  226 -------SSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGP  298 (385)
T ss_pred             -------hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence                   0002355667888899999999999999999999333333344999999999999999999999999999864


Q ss_pred             hhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 006199          566 KIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIAL  645 (657)
Q Consensus       566 k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~~~~~V~VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSL  645 (657)
                      +....+++.....+++|++++|++++++++++++++....++++++++|+|++.+++|++||.+++.+++.++++|++++
T Consensus       299 ~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~  378 (385)
T PF03547_consen  299 RKSALGWKPSIIAVLVRLIILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSI  378 (385)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            33344566667789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 006199          646 PITLVYY  652 (657)
Q Consensus       646 ptiil~~  652 (657)
                      +++++|+
T Consensus       379 ~~~~~~~  385 (385)
T PF03547_consen  379 PTLPLWI  385 (385)
T ss_pred             HHHHHHC
Confidence            9999885

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>PRK09903 putative transporter YfdV; Provisional	Back alignment and domain information

>COG0679 Predicted permeases [General function prediction only]	Back alignment and domain information

>KOG2722 consensus Predicted membrane protein [Function unknown]	Back alignment and domain information

>TIGR00841 bass bile acid transporter	Back alignment and domain information

>TIGR00832 acr3 arsenical-resistance protein	Back alignment and domain information

>COG0385 Predicted Na+-dependent transporter [General function prediction only]	Back alignment and domain information

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []	Back alignment and domain information

>PRK10711 hypothetical protein; Provisional	Back alignment and domain information

>PRK04288 antiholin-like protein LrgB; Provisional	Back alignment and domain information

>TIGR00841 bass bile acid transporter	Back alignment and domain information

>TIGR00659 conserved hypothetical protein TIGR00659	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		657
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 49.1 bits (116), Expect = 4e-06
 Identities = 47/265 (17%), Positives = 83/265 (31%), Gaps = 66/265 (24%)

Query: 31  WKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWT 90
           W  F+   C             +L    ++T         F++A T   I +        
Sbjct: 259 WNAFNL-SC------------KIL----LTTRF--KQVTDFLSAATTTHISLDHHSM--- 296

Query: 91  NFTKNGSLEWMITIFSLST--LPNTLVMGIPLLIAMYGE--------YSGSLMVQVVVLQ 140
             T +     ++         LP  ++   P  +++  E        +     V    L 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 141 CIIWYTL-LLFLFEYRGA-KMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGD 198
            II  +L +L   EYR     L +  FP +A       + + ++SL   D +++D  +  
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSV--FPPSA------HIPTILLSLIWFDVIKSDVMVVV 408

Query: 199 DGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHS--- 255
           + KLH         + SL       +  +P   T   I S+              H    
Sbjct: 409 N-KLH---------KYSL-------VEKQPKEST-ISIPSIYLELKVKLENEYALHRSIV 450

Query: 256 DFYSMMGVQGFPGGRLSNFGPADMY 280
           D Y++   + F    L      D Y
Sbjct: 451 DHYNIP--KTFDSDDLIP-PYLDQY 472

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		657
3zux_A		332	Transporter, ASBTNM; transport protein, membrane p	99.12
3zux_A		332	Transporter, ASBTNM; transport protein, membrane p	94.73

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*	Back alignment and structure

Probab=99.12  E-value=1e-09  Score=115.69  Aligned_cols=146  Identities=16%  Similarity=0.151  Sum_probs=118.4

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccch-hhhhccchHHHHHH
Q 006199          501 LIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQP-KIIACGNSVATFSM  579 (657)
Q Consensus       501 l~~vlkkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~-k~~~~~~k~vl~i~  579 (657)
                      ++++. +.+.++..+.++++.++..+       .|+... .++..-..+.++.||.+|+.+...+ +....+++......
T Consensus         9 l~~~~-~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l   79 (332)
T 3zux_A            9 LSKIS-SFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGV   79 (332)
T ss_dssp             HHHHH-HHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHH
Confidence            44444 45678889999999888877       343221 1333345678899999999999864 11224667778889


Q ss_pred             HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006199          580 AVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVL  655 (657)
Q Consensus       580 ~iKLIl~PLLv~ll~~l~gL~~~~~~V~VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~~~LL  655 (657)
                      +.+++++|+++++++.++++++.....+++.+++|+++.+.+++..+|.|.+.+...+.++|++++.++++|..++
T Consensus        80 ~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~  155 (332)
T 3zux_A           80 IAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLML  155 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999987777776553

PyMOL of 3zux

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00