Citrus Sinensis ID: 006208

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------
MEKKPKIAQYRERLDKTLASPELTNEETLKMLVKNQLMHSSLDGNEGCSENVVERKTAEISSFLGMLRSASVKDNEVSKTSEASHGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSVSTYNEDYRRPLEGPLYFRIREALYSTEESEEPMKAEELKNGARILPEEHFTKAVECGPNKMEQMLYNVTHDGDSSENNAQVTDINVVSEIEEEESGETTLVEKDNNSIHQSLTDDVPKYCNSESLQNDTQVAGISIVGEIEEEEIEGSICSDENDKDMSRHLNDEIPDKSHVNMRKKISISPGVEQALETLETAISMVREYGFNSQSKSFFDLTIEKTRKVEMSVVKESTSSENRVHPDVEVCKKEITDVELSEKEITENNLQESRKSIGIQDSRRSGSNSYLREGNHNKIAPASLEDDLSNPDETNQVAVHSSRNGMAEIPILDQRVHDSKQKNAKANEFHDNTSIDGRRKLSRQKKQWLCCFFINSA
cccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccEEEEEEEcccccccEEEEEEEEEEccHHHHHHHHHccccccccccccccccccEEEEEEEEccccccEEEEEEEEcccccccccEEEEEEEEEEccccEEEEEEEEccccccccccccccccccccccccEEEEEEEccEEEEEEcccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccccccHHHHHHcccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccc
ccccccHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccEEEEEEccccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccEEEEEccEEEEEccccEEEEEEEEccccccccEEEEEEEEEEcccccEEEEEEEcccccccccccccccccccccccccEEEEEEEEEEEEEEccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHcccccEEEEEccccccccHHcccccccccccccccccccccccccccccccccEEcccEEEEcccccEccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEcccccEEcccccEEEcccccccccccccccccccccccccccccccccccccccEcccccHHcccccccccEEEEEEcccccEEccccccEEcccccccccccccccccccccccccccccccccEEEEEEcc
MEKKPKIAQYRERLDktlaspeltneETLKMLVKNQLMhssldgnegcsenvVERKTAEISSFLGMLrsasvkdnevsktseashgewklkqDTEEFRVMyregphgtpfHSLLVEGYVEAPLDVCLCVswesalytkwwpqyifpqfkiitsnclkkirvgeqislvrvkvpwplscreglvhyfsfdyfqDGLVVVLINSISdlksidksthgftsdgipeakdvVRVDLVGGFALQKVTEERSYFRTIANMdikldfvppsliNFISRQLIGNGFKLYQKAVVSVSTynedyrrplegplYFRIREALysteeseepmkaeelkngarilpeehftkavecgpnkMEQMLYNVthdgdssennaqvtdinvvseieeeesgettlvekdnnsihqsltddvpkycnseslqndtqvAGISIVgeieeeeiegsicsdendkdmsrhlndeipdkshvnmrkkisispGVEQALETLETAISMVReygfnsqsksffdLTIEKTRKVEMSVVKEstssenrvhpdvevCKKEITDVELSEKEITENNLQEsrksigiqdsrrsgsnsylregnhnkiapasleddlsnpdetnqvavhssrngmaeipildqrvhdskqknakanefhdntsidgrRKLSRQKKQWLCCFFINSA
mekkpkiaqyrerldktlaspeltneETLKMLVKNQLMHSSLDGNEGCSENVVERKTAEISSFLgmlrsasvkdnevsktseashgewklkqDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSthgftsdgipeakDVVRVDLVGGFalqkvteerSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSVstynedyrrplegplyFRIREALYsteeseepmkAEELKNGARILPEEHFTKAVECGPNKMEQMLYNVTHdgdssennaqVTDINVVSEIEEEESgettlvekdnnsIHQSLTDDVPKYCNSESLQNDTQVAGISIVGEieeeeiegsicsdendkDMSRHLNdeipdkshvnmrKKISISPGVEQALETLETAISMVREygfnsqsksffdlTIEKTRKVEMSVVkestssenrvhpdvevCKKEitdvelsekeitennlqesrksigiqdsrrsgsnsyLREGNHNKIapasleddlsnpDETNQVAVHSSRNGMAEIPILDQRVHDSKQknakanefhdntsidgrrklsrqkKQWLccffinsa
MEKKPKIAQYRERLDKTLASPELTNEETLKMLVKNQLMHSSLDGNEGCSENVVERKTAEISSFLGMLRSASVKDNEVSKTSEASHGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSVSTYNEDYRRPLEGPLYFRIREALYSTEESEEPMKAEELKNGARILPEEHFTKAVECGPNKMEQMLYNVTHDGDSSENNAQVTDINvvseieeeesgettlveKDNNSIHQSLTDDVPKYCNSESLQNDTQVAgisivgeieeeeiegsicsdeNDKDMSRHLNDEIPDKSHVNMRKKISISPGVEQALETLETAISMVREYGFNSQSKSFFDLTIEKTRKVEMSVVKESTSSENRVHPDVEVCKKEITDVELSEKEITENNLQESRKSIGIQDSRRSGSNSYLREGNHNKIAPASLEDDLSNPDETNQVAVHSSRNGMAEIPILDQRVHDSKQKNAKANEFHDNTSIDGRRKLSRQKKQWLCCFFINSA
************************************************************************************************FRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSVSTYNEDYRRPLEGPLYFRIREALY**********************************************************************************************************VAGISIVGE************************************************LETLETAISMVREYGFNSQSKSFFDLTIE*********************************************************************************************************************************************KQWLCCFFI***
**********RERLDKTLASPELTNEETLKMLVK****************NVVERKTAEISSFLGMLR**********************KQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSID****GF*SDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQ**************RPLEGPLYFRIREALYSTE************************************************************************************************************************************************************VEQALETLETAISM*******************************************************************************************************************************************************************LCCFFINSA
MEKKPKIAQYRERLDKTLASPELTNEETLKMLVKNQLMHSSLDGNEGCSENVVERKTAEISSFLGMLRSA*****************WKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSVSTYNEDYRRPLEGPLYFRIREALYS**********EELKNGARILPEEHFTKAVECGPNKMEQMLYNVTHDGDSSENNAQVTDINVVSEI***********EKDNNSIHQSLTDDVPKYCNSESLQNDTQVAGISIVGEIEEEEIEGSICSDENDKDMSRHLNDEIPDKSHVNMRKKISISPGVEQALETLETAISMVREYGFNSQSKSFFDLTIEKTRKV***************HPDVEVCKKEITDVELSEKEITENNLQESRKSIGIQDSRRSGSNSYLREGNHNKIAPASLEDDLSNPDETNQVAVHSSRNGMAEIPILDQRVHDSKQKNAKANEFHDNTSIDGRRKLSRQKKQWLCCFFINSA
*****KIAQYRERLDKTLASPELTNEETLKMLVKNQLMHSSLDGNEGCSENVVERKTAEISSFLGMLRSA**************HGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSVSTYNEDYRRPLEGPLYFRIREALYSTEESEEPMKAEELKNGARILPEEHFTKAVECGPNKMEQMLYNVTHDGDSSENNAQVTDINVVSEIEEE*********************DVPKYC******NDTQVAGISIVGEIEEEEIEGSICS***********************RKKISISPGVEQALETLETAISMVREYGFNS***********************************EVC****TDVELSE*************************NSYLR*G*HNKIAPASLEDDLSNPDETNQVAVHSSRNGMAEIPILDQRVHD**************************KKQWLCCFFINSA
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MEKKPKIAQYRERLDKTLASPELTNEETLKMLVKNQLMHSSLDGNEGCSENVVERKTAEISSFLGMLRSASVKDNEVSKTSEASHGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSVSTYNEDYRRPLEGPLYFRIREALYSTEESEEPMKAEELKNGARILPEEHFTKAVECGPNKMEQMLYNVTHDGDSSENNAQVTDINVVSEIEEEESGETTLVEKDNNSIHQSLTDDVPKYCNSESLQNDTQVAGISIVGEIEEEEIEGSICSDENDKDMSRHLNDEIPDKSHVNMRKKISISPGVEQALETLETAISMVREYGFNSQSKSFFDLTIEKTRKVEMSVVKESTSSENRVHPDVEVCKKEITDVELSEKEITENNLQESRKSIGIQDSRRSGSNSYLREGNHNKIAPASLEDDLSNPDETNQVAVHSSRNGMAEIPILDQRVHDSKQKNAKANEFHDNTSIDGRRKLSRQKKQWLCCFFINSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query657
255566199707 conserved hypothetical protein [Ricinus 0.958 0.891 0.499 1e-156
225439338613 PREDICTED: uncharacterized protein LOC10 0.917 0.983 0.480 1e-155
356534574665 PREDICTED: uncharacterized protein LOC10 0.934 0.923 0.471 1e-141
356500571662 PREDICTED: uncharacterized protein LOC10 0.928 0.921 0.461 1e-138
356503864615 PREDICTED: uncharacterized protein LOC10 0.917 0.980 0.445 1e-137
224139976 803 predicted protein [Populus trichocarpa] 0.550 0.450 0.631 1e-132
449501130612 PREDICTED: uncharacterized LOC101210898 0.535 0.575 0.597 1e-126
296089339593 unnamed protein product [Vitis vinifera] 0.537 0.595 0.612 1e-126
449437494389 PREDICTED: uncharacterized protein LOC10 0.482 0.814 0.641 1e-125
356570906474 PREDICTED: uncharacterized protein LOC10 0.503 0.698 0.597 1e-114
>gi|255566199|ref|XP_002524087.1| conserved hypothetical protein [Ricinus communis] gi|223536655|gb|EEF38297.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 330/661 (49%), Positives = 426/661 (64%), Gaps = 31/661 (4%)

Query: 1   MEKKPKIAQYRERLDKTLASPELTNEETLKMLVKNQLMHSSLDGNEGCSENVVERKTAEI 60
           MEK   I +   R  + L    +T+ ++L  +  N   H  +     CSENV++RKT E+
Sbjct: 64  MEKSQNIEKGWTRRWRPLNLQMMTHLKSLSRI--NSFGHHLMKMKARCSENVIDRKTREV 121

Query: 61  SSFLGMLRSASVKDNEVSKTSEASHGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVE 120
           S FL MLRSASV ++E SKT + SH EWKLK D EE+RVMYR GPHGTP H+LLVEGYV+
Sbjct: 122 SYFLDMLRSASVSEHETSKTGQTSHSEWKLKDDNEEYRVMYRPGPHGTPLHTLLVEGYVD 181

Query: 121 APLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCRE 180
            PLD+CLC+SWE  LY KWWPQ  FP FKI +  CL+K++VGE +S +RVKV WPLS RE
Sbjct: 182 GPLDICLCISWELTLYRKWWPQISFPPFKITSCKCLQKVQVGEHVSFLRVKVTWPLSARE 241

Query: 181 GLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQK 240
            +VHYF F+Y +DGLVVVL+NSISD +SIDKSTHGFT DGIPEAKDVVR+DLVGGFA+QK
Sbjct: 242 AIVHYFLFEYLKDGLVVVLVNSISDSESIDKSTHGFTRDGIPEAKDVVRIDLVGGFAIQK 301

Query: 241 VTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSVSTYNEDYRRPLE 300
           VT ERSYFRTIA +D+KLDFVPP+L+NFISRQLIG+GF+LYQKAV SVS Y+EDY + LE
Sbjct: 302 VTPERSYFRTIATVDLKLDFVPPTLLNFISRQLIGSGFRLYQKAVASVSNYDEDYSKILE 361

Query: 301 GPLYFRIREALYSTEESEEPMKAEELKNGARILPEEHFTKAVECGPNKMEQMLYNVTHDG 360
            P+Y RI EAL S  E  E M+ +EL++ + +  +E  T+ ++     MEQ +  +    
Sbjct: 362 DPMYARIHEALVSVVEPNETMERQELQSDSCL--QEDSTRDMQNSLADMEQNISRIEDAS 419

Query: 361 DSSENNAQVTDINVVSEIEEEESGETTLVEKDNNSIHQSLTDDVPKYCNSESLQNDTQVA 420
           +S   N +VTD    +EIEE E+ E+        SI   L D++   C    + +D  VA
Sbjct: 420 ESVVRNEEVTDKKTFAEIEEGETHES------EGSI--PLKDEI--RCTKPEVHSDNHVA 469

Query: 421 GI-----SIVGEIEEEEIEGSICSDENDKDMSRHLNDEIPDKSHVNMRKKISISPGVEQA 475
            I       + EIEEEE   SI  +++D+ +   + D++ ++S VN R  I +SP VE+A
Sbjct: 470 EILQNTRKEISEIEEEESGFSIDLEDDDRSIDEPITDKVANRSPVNWRTNIMLSPEVERA 529

Query: 476 LETLETAISMVREYGFNSQSKSFFDLTIEKTRKVEMSVVKEST-SSENRVHPDVEVCKKE 534
           L+TLETAIS+VRE G NS ++    +  E    ++ S  + ST   E+ V  D EV    
Sbjct: 530 LDTLETAISLVRERGSNSLARFSPVMGSEGFPNLQKSAERNSTFVEEDVVSSDTEVS--- 586

Query: 535 ITDVELSEKEIT-ENNLQESRKSIGIQD-SRRSGSNSYLREGNHNKIAP-ASLEDDLSNP 591
              VE  +K  T E    +S+ S G  D S R+GSNS+ RE NHNKIAP AS E  LS  
Sbjct: 587 ---VEAPKKGRTVERTSHDSKNSSGNHDVSWRTGSNSFTREMNHNKIAPAASPEQFLSPA 643

Query: 592 DETNQVAVHSSRNGMAEIPILDQRVHDSKQKNAKANEFHDNTSIDGRRKLSRQKKQWLCC 651
            E+NQV + SSR G+ +  I D  + D KQ     N FH+N  +    KLSRQK    CC
Sbjct: 644 SESNQV-LGSSRVGITDRSIKDPTLGDDKQMRGGVNGFHEN-GMHEENKLSRQKNHRFCC 701

Query: 652 F 652
           F
Sbjct: 702 F 702

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225439338|ref|XP_002268304.1| PREDICTED: uncharacterized protein LOC100261548 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356534574|ref|XP_003535828.1| PREDICTED: uncharacterized protein LOC100798284 [Glycine max] Back     alignment and taxonomy information
>gi|356500571|ref|XP_003519105.1| PREDICTED: uncharacterized protein LOC100805715 [Glycine max] Back     alignment and taxonomy information
>gi|356503864|ref|XP_003520721.1| PREDICTED: uncharacterized protein LOC100813944 [Glycine max] Back     alignment and taxonomy information
>gi|224139976|ref|XP_002323366.1| predicted protein [Populus trichocarpa] gi|222867996|gb|EEF05127.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449501130|ref|XP_004161285.1| PREDICTED: uncharacterized LOC101210898 [Cucumis sativus] Back     alignment and taxonomy information
>gi|296089339|emb|CBI39111.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449437494|ref|XP_004136527.1| PREDICTED: uncharacterized protein LOC101210898, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356570906|ref|XP_003553624.1| PREDICTED: uncharacterized protein LOC100792855 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query657
TAIR|locus:2081456596 AT3G11720 "AT3G11720" [Arabido 0.465 0.513 0.513 7.9e-93
TAIR|locus:2081456 AT3G11720 "AT3G11720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 863 (308.9 bits), Expect = 7.9e-93, Sum P(2) = 7.9e-93
 Identities = 168/327 (51%), Positives = 236/327 (72%)

Query:     1 MEKKPKIAQYRERLDKTLASPELTNEETLKMLVKNQLMHSSLDGNEGCSENVVERKTAEI 60
             MEKK  +++YRERL++TL+SPEL NE+TLK LV+ QL       NE CS ++++++ A +
Sbjct:    55 MEKKRDVSEYRERLNETLSSPELINEQTLKTLVRKQL-------NEECSVDILDQRVAAL 107

Query:    61 SSFLGMLRSASVKDNEVSKTS-EASHGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYV 119
             SS +  LRS S KD ++SK+S EAS+G+WK+K D ++ RVMYREG  G+PFH+LLVEG  
Sbjct:   108 SSTIEKLRSVSTKDQDLSKSSTEASYGDWKVKHDDKDCRVMYREGLKGSPFHTLLVEGCT 167

Query:   120 EAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCR 179
             +  ++ CLCV WES+ Y KWWP+  FP F+++ + CL+K R+ EQI L+RVK PWPL+ R
Sbjct:   168 DGTIEDCLCVCWESSFYEKWWPKLTFPSFRVLEAKCLQKFRIDEQICLLRVKAPWPLTDR 227

Query:   180 EGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQ 239
             E ++ +F F+YF+D LV++L+NSI              S  + E  + VR+D VGG A+Q
Sbjct:   228 EAVLQFFVFEYFKDDLVIILLNSIE-----------VESGSVAEV-NAVRIDFVGGVAIQ 275

Query:   240 KVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSVSTYNEDYRRPL 299
             KVT E+SY R IA +DIKLD VPPSLINF+SRQL+GNGFKL++K + SV+  ++DY+  L
Sbjct:   276 KVTPEKSYIRFIAEVDIKLDLVPPSLINFMSRQLLGNGFKLFKKTIGSVAE-SDDYKTVL 334

Query:   300 EGPLYFRIREALYSTEESEEPMKAEEL 326
               PLY  IREALYS+++++E  +  EL
Sbjct:   335 ADPLYTHIREALYSSDKTDEICQVNEL 361
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query657
cd08877215 cd08877, START_2, Uncharacterized subgroup of the 2e-65
cd00177193 cd00177, START, Lipid-binding START domain of mamm 4e-11
cd08876195 cd08876, START_1, Uncharacterized subgroup of the 2e-07
>gnl|CDD|176886 cd08877, START_2, Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information 
 Score =  213 bits (545), Expect = 2e-65
 Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 16/226 (7%)

Query: 66  MLRSASVKDNEVSKTSEASHGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDV 125
            +R  +    E  K  +     W L++++E  RV Y+  P G    SL +EG ++ PL  
Sbjct: 3   KIRQEATIMQENLKDLD-ESDGWTLQKESEGIRVYYKFEPDG-SLLSLRMEGEIDGPLFN 60

Query: 126 CLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHY 185
            L +  E  LY  W P      F I +    +  R  +++  +RV +PWPLS RE +   
Sbjct: 61  LLALLNEVELYKTWVP------FCIRSKKVKQLGRA-DKVCYLRVDLPWPLSNREAVFRG 113

Query: 186 FSFDYF-QDGLVVVLINSISDLKSIDKSTHGFTSDGIPE--AKDVVRVDLVGGFALQKVT 242
           F  D   ++G +V+L+ SI D    D      T   IP   AK V R+    GF +  ++
Sbjct: 114 FGVDRLEENGQIVILLKSIDD----DPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPIS 169

Query: 243 EERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSV 288
             + Y R +AN+D K+  VP SL+NF++R+  G  F+  QKA  +V
Sbjct: 170 PTKCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFEKIQKAAKNV 215

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, and autoimmune disease. Length = 215
>gnl|CDD|176851 cd00177, START, Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>gnl|CDD|176885 cd08876, START_1, Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 657
cd08877215 START_2 Uncharacterized subgroup of the steroidoge 100.0
cd08911207 START_STARD7-like Lipid-binding START domain of ma 100.0
cd08910207 START_STARD2-like Lipid-binding START domain of ma 100.0
cd08870209 START_STARD2_7-like Lipid-binding START domain of 100.0
cd08871222 START_STARD10-like Lipid-binding START domain of m 100.0
cd08906209 START_STARD3-like Cholesterol-binding START domain 99.97
cd08872235 START_STARD11-like Ceramide-binding START domain o 99.97
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 99.97
cd08905209 START_STARD1-like Cholesterol-binding START domain 99.97
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 99.97
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 99.97
cd08874205 START_STARD9-like C-terminal START domain of mamma 99.97
smart00234206 START in StAR and phosphatidylcholine transfer pro 99.97
cd08914236 START_STARD15-like Lipid-binding START domain of m 99.96
cd00177193 START Lipid-binding START domain of mammalian STAR 99.96
cd08903208 START_STARD5-like Lipid-binding START domain of ma 99.95
cd08913240 START_STARD14-like Lipid-binding START domain of m 99.95
cd08867206 START_STARD4_5_6-like Lipid-binding START domain o 99.95
cd08873235 START_STARD14_15-like Lipid-binding START domain o 99.95
PF01852206 START: START domain; InterPro: IPR002913 START (St 99.94
cd08908204 START_STARD12-like C-terminal lipid-binding START 99.94
cd08909205 START_STARD13-like C-terminal lipid-binding START 99.92
cd08904204 START_STARD6-like Lipid-binding START domain of ma 99.9
cd08907205 START_STARD8-like C-terminal lipid-binding START d 99.88
KOG2761219 consensus START domain-containing proteins involve 99.88
cd08902202 START_STARD4-like Lipid-binding START domain of ma 99.77
PLN00188719 enhanced disease resistance protein (EDR2); Provis 99.56
cd07813138 COQ10p_like Coenzyme Q-binding protein COQ10p and 99.42
cd08864208 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand- 99.4
cd08866144 SRPBCC_11 Ligand-binding SRPBCC domain of an uncha 99.31
cd07819140 SRPBCC_2 Ligand-binding SRPBCC domain of an unchar 99.0
cd05018144 CoxG Carbon monoxide dehydrogenase subunit G (CoxG 98.99
PF03364130 Polyketide_cyc: Polyketide cyclase / dehydrase and 98.62
cd08875229 START_ArGLABRA2_like C-terminal lipid-binding STAR 98.6
KOG1739611 consensus Serine/threonine protein kinase GPBP [Si 98.56
cd07817139 SRPBCC_8 Ligand-binding SRPBCC domain of an unchar 98.54
cd07821140 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), 98.45
PRK10724158 hypothetical protein; Provisional 98.45
cd08861142 OtcD1_ARO-CYC_like N-terminal and C-terminal aroma 98.27
PF11274184 DUF3074: Protein of unknown function (DUF3074) 97.98
cd08860146 TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom 97.82
PF10604139 Polyketide_cyc2: Polyketide cyclase / dehydrase an 97.73
cd07812141 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR 97.69
cd07824146 SRPBCC_6 Ligand-binding SRPBCC domain of an unchar 97.51
cd07823146 SRPBCC_5 Ligand-binding SRPBCC domain of an unchar 97.51
cd08862138 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of 97.37
cd07818150 SRPBCC_1 Ligand-binding SRPBCC domain of an unchar 97.37
cd07822141 SRPBCC_4 Ligand-binding SRPBCC domain of an unchar 97.18
cd08865140 SRPBCC_10 Ligand-binding SRPBCC domain of an uncha 97.15
COG2867146 Oligoketide cyclase/lipid transport protein [Lipid 96.52
cd07814139 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand- 96.07
cd07825144 SRPBCC_7 Ligand-binding SRPBCC domain of an unchar 95.43
cd07820137 SRPBCC_3 Ligand-binding SRPBCC domain of an unchar 94.58
cd08893136 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi 94.08
KOG3177227 consensus Oligoketide cyclase/lipid transport prot 90.66
cd08899157 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan 88.19
COG3427146 Carbon monoxide dehydrogenase subunit G, CoxG [Ene 86.98
cd08896146 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan 84.85
cd07816148 Bet_v1-like Ligand-binding bet_v_1 domain of major 82.75
COG5637217 Predicted integral membrane protein [Function unkn 80.88
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information 
Probab=100.00  E-value=1.2e-41  Score=335.59  Aligned_cols=211  Identities=32%  Similarity=0.553  Sum_probs=191.3

Q ss_pred             HHHhhhhHHHHHHHHHhhhccccccccccccccCCCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHH
Q 006208           51 NVVERKTAEISSFLGMLRSASVKDNEVSKTSEASHGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVS  130 (657)
Q Consensus        51 ~v~~~rs~ev~~fL~mL~s~~~~d~~~~~~~e~s~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL  130 (657)
                      .+++.+++.+..++..|..               +++|++..+++||+||||..+ +++++++|++|+|++|+..+++||
T Consensus         2 ~~~~~~~~~~~~~~~~l~~---------------~~~W~~~~~~~~i~v~~r~~~-~~~~~~~k~e~~i~~~~~~~~~vl   65 (215)
T cd08877           2 DKIRQEATIMQENLKDLDE---------------SDGWTLQKESEGIRVYYKFEP-DGSLLSLRMEGEIDGPLFNLLALL   65 (215)
T ss_pred             hhHHHHHHHHHHHHhcccC---------------CCCcEEeccCCCeEEEEEeCC-CCCEEEEEEEEEecCChhHeEEEE
Confidence            3578888888888888876               558999999999999999997 677999999999999999999999


Q ss_pred             hhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeee-CCCeEEEEEecccccccc
Q 006208          131 WESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYF-QDGLVVVLINSISDLKSI  209 (657)
Q Consensus       131 ~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~l-edGsvVIl~kSI~D~~~~  209 (657)
                      +|+++|++|+|+|.       +++.|++++.++.++|+++++|||+++||+|+++++++++ ++|.++|.++|+++....
T Consensus        66 ~d~~~~~~W~p~~~-------~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~  138 (215)
T cd08877          66 NEVELYKTWVPFCI-------RSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEF  138 (215)
T ss_pred             ehhhhHhhhcccce-------eeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCccc
Confidence            99999999999999       8999999999999999999999999999999999988888 689999999999865322


Q ss_pred             cccCCCCCCCCCCCCC-CeEEEEe-eeeEEEEEecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006208          210 DKSTHGFTSDGIPEAK-DVVRVDL-VGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVS  287 (657)
Q Consensus       210 ~~~~~G~~~d~IPe~K-GvVRIdi-~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~k  287 (657)
                      +    +++...+|+.+ |+||+.. .++|.|+|+++++|.++|++++||||+|||.||+||++|++++.+|.+|+++|++
T Consensus       139 ~----~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~~l~k~~~~  214 (215)
T cd08877         139 L----KLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFEKIQKAAKN  214 (215)
T ss_pred             c----cccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1    22334689988 9999999 8999999999999999999999999977999999999999999999999999987


Q ss_pred             h
Q 006208          288 V  288 (657)
Q Consensus       288 v  288 (657)
                      +
T Consensus       215 ~  215 (215)
T cd08877         215 V  215 (215)
T ss_pred             C
Confidence            5

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding Back     alignment and domain information
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins Back     alignment and domain information
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins Back     alignment and domain information
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins Back     alignment and domain information
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins Back     alignment and domain information
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] Back     alignment and domain information
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism] Back     alignment and domain information
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins Back     alignment and domain information
>PLN00188 enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins Back     alignment and domain information
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily Back     alignment and domain information
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) Back     alignment and domain information
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp Back     alignment and domain information
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms] Back     alignment and domain information
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins Back     alignment and domain information
>PRK10724 hypothetical protein; Provisional Back     alignment and domain information
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains Back     alignment and domain information
>PF11274 DUF3074: Protein of unknown function (DUF3074) Back     alignment and domain information
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains Back     alignment and domain information
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis Back     alignment and domain information
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily Back     alignment and domain information
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu Back     alignment and domain information
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism] Back     alignment and domain information
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins Back     alignment and domain information
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain Back     alignment and domain information
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism] Back     alignment and domain information
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion] Back     alignment and domain information
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins Back     alignment and domain information
>COG5637 Predicted integral membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query657
3qsz_A189 Crystal Structure Of The Star-Related Lipid Transfe 1e-04
>pdb|3QSZ|A Chain A, Crystal Structure Of The Star-Related Lipid Transfer Protein (Fragment 25-204) From Xanthomonas Axonopodis At The Resolution 2.4a, Northeast Structural Genomics Consortium Target Xar342 Length = 189 Back     alignment and structure 
Iteration: 1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 88  WKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQ 147
           W L +D E  +V Y     G+P      E  ++A  D  + V  ++  + +W P      
Sbjct: 5   WSLAKDAEGIKV-YVRNVEGSPLREFRGEVRLKAAADDVVKVLRDANAFRQWXPD----- 58
Query: 148 FKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLK 207
              + ++ L K    EQ   +    PWP+S R+G V++F+++   DG + V + ++ D  
Sbjct: 59  ---VAASELLKATDTEQYHYLDNSAPWPVSNRDG-VYHFTYEKAGDGAITVRVEAVPDYL 114
Query: 208 SIDK 211
            + K
Sbjct: 115 PLRK 118

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query657
3qsz_A189 STAR-related lipid transfer protein; structural ge 3e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
2pso_A237 STAR-related lipid transfer protein 13; alpha and 5e-07
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 1e-06
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 6e-06
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Length = 189 Back     alignment and structure
 Score = 88.1 bits (218), Expect = 3e-20
 Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 27/202 (13%)

Query: 85  HGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYI 144
              W L +D E  +V  R    G+P      E  ++A  D  + V  ++  + +W P   
Sbjct: 2   QDGWSLAKDAEGIKVYVRNVE-GSPLREFRGEVRLKAAADDVVKVLRDANAFRQWMPDVA 60

Query: 145 FPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSIS 204
               +++      K    EQ   +    PWP+S R+  V++F+++   DG + V + ++ 
Sbjct: 61  --ASELL------KATDTEQYHYLDNSAPWPVSNRD-GVYHFTYEKAGDGAITVRVEAV- 110

Query: 205 DLKSIDKSTHGFTSDGIPEAKDVVRVD-LVGGFALQKVTEERSYFRTIANMDIKLDFVPP 263
                         D +P  K  VR+    G + L     +        +       +P 
Sbjct: 111 -------------PDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGGS-IPS 155

Query: 264 SLINFISRQLIGNGFKLYQKAV 285
            L N    +      K  +  +
Sbjct: 156 WLANQTVVETPFGTLKALRSHL 177
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Length = 237 Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Length = 255 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Length = 258 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query657
3qsz_A189 STAR-related lipid transfer protein; structural ge 100.0
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 99.97
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 99.96
2pso_A237 STAR-related lipid transfer protein 13; alpha and 99.96
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 99.96
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 99.95
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 99.95
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 99.94
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 99.92
2d4r_A147 Hypothetical protein TTHA0849; start domain, struc 98.77
1t17_A148 Conserved hypothetical protein; beta-alpha-beta-BE 98.68
2pcs_A162 Conserved protein; structural genomics, unknown fu 98.13
3tvq_A169 Multifunctional cyclase-dehydratase-3-O-methyl TR 98.0
3tfz_A172 Cyclase; helix-GRIP, BET V1-like superfamily, bios 97.96
2ns9_A157 Hypothetical protein APE2225; uncharacterized cons 97.73
3ggn_A155 Uncharacterized protein DR_A0006; structural genom 97.66
3tl1_A159 WHIE ORF VI, polyketide cyclase; helix-GRIP fold, 97.42
3f08_A146 Uncharacterized protein Q6HG14; NESG Q6HG14_bachk 97.31
3ijt_A155 SMU.440, putative uncharacterized protein; hypothe 97.08
2le1_A151 Uncharacterized protein; structural genomics, nort 97.08
3p9v_A161 Uncharacterized protein; structural genomics, PSI- 96.89
2qpv_A156 Uncharacterized protein ATU1531; structural genomi 96.87
3p51_A160 Uncharacterized protein; structural genomics, PSI- 96.85
1tw0_A157 Pathogenesis-related class 10 protein SPE-16; seve 96.12
1e09_A159 PRU AV 1; allergen, major cherry allergen, pathoge 95.99
2qim_A158 PR10.2B; trans-zeatin, cytokinin, plant hormones, 95.77
1icx_A155 Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, 95.51
2leq_A146 Uncharacterized protein; start domains, structural 95.04
3rt2_A183 Abscisic acid receptor PYL10; ABA-independent PP2C 93.8
3kl1_A190 PYL2, putative uncharacterized protein AT2G26040; 92.41
3rws_A168 MTN13 protein; zeatin, cytokinin, hormone, lucerne 92.31
2flh_A155 Cytokinin-specific binding protein; zeatin, pathog 91.95
4a8u_A159 Major pollen allergen BET V 1-J; PR-10 protein; 1. 91.86
2i9y_A166 Major latex protein-like protein 28 or MLP-like pr 91.65
3q63_A151 MLL2253 protein; structural genomics, PSI-biology, 90.48
3pu2_A164 Uncharacterized protein; SRPBCC superfamily, PSI-b 90.13
3jrs_A208 PYL1, putative uncharacterized protein AT5G46790; 88.71
1xuv_A178 Hypothetical protein MM0500; alpha-beta protein, n 88.48
1z94_A147 Conserved hypothetical protein; NESG, CV1439, stru 88.38
2lcg_A142 Uncharacterized protein; start domain, structural 87.06
3oqu_A205 Abscisic acid receptor PYL9; RCAR1, hormone recept 86.96
1xn6_A143 Hypothetical protein BC4709; structural genomics, 86.92
2nn5_A184 Hypothetical protein EF_2215; structural genomics, 86.2
2il5_A171 Hypothetical protein; structural genomics, APC2365 85.35
2lak_A160 AHSA1-like protein RHE_CH02687; NESG, structural g 85.34
3oji_A189 Abscisic acid receptor PYL3; crystal, PP2C, pyraba 85.26
3eli_A152 AHSA1, AHA1 domain protein; alpha-beta protein, st 85.15
2l9p_A164 Uncharacterized protein; structural genomics, nort 85.07
2vjg_A154 Major allergen DAU C 1; major carrot allergen, pat 84.78
2ldk_A172 Uncharacterized protein; structural genomics, nort 83.89
3qrz_A223 Abscisic acid receptor PYL5; crystal, hormone rece 83.01
3q64_A162 MLL3774 protein; structural genomics, PSI-biology, 82.08
3uid_A168 Putative uncharacterized protein; SRPBCC superfami 80.02
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure
Probab=100.00  E-value=5.4e-32  Score=257.04  Aligned_cols=178  Identities=22%  Similarity=0.333  Sum_probs=161.5

Q ss_pred             CCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeE
Q 006208           86 GEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQI  165 (657)
Q Consensus        86 egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~I  165 (657)
                      ++|++..+++|++||+|..+ +++++.+|++++|++|+..+++++.|++.|++|+|.|.       ++++|++ +.+..+
T Consensus         3 ~~W~~~~~~~gv~v~~~~~~-~~~~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~-------~~~vle~-~~~~~i   73 (189)
T 3qsz_A            3 DGWSLAKDAEGIKVYVRNVE-GSPLREFRGEVRLKAAADDVVKVLRDANAFRQWMPDVA-------ASELLKA-TDTEQY   73 (189)
T ss_dssp             CCCEEEEEETTEEEEEECCT-TCSSCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEE-------EEEEEEE-CSSEEE
T ss_pred             CCCEEEEcCCCEEEEEEeCC-CCCeEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhcC-------EEEEEee-cCCceE
Confidence            48999999999999999985 88999999999999999999999999999999999999       9999998 778899


Q ss_pred             EEEEEeecccccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEecCC
Q 006208          166 SLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVTEE  244 (657)
Q Consensus       166 vY~rvklPWPLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg~n  244 (657)
                      +|+.+++|||+++||+|+......+ .+|.++|.+.+.              ++.+|+.+|+||+.. .|+|.|+| +++
T Consensus        74 ~y~~~~~p~p~~~RD~v~~~~~~~~-~~g~~~i~~~~~--------------~~~~P~~~~~VR~~~~~~~~~i~p-~~~  137 (189)
T 3qsz_A           74 HYLDNSAPWPVSNRDGVYHFTYEKA-GDGAITVRVEAV--------------PDYLPLRKGKVRIPRAKGQWTLVP-DAD  137 (189)
T ss_dssp             EEEEECCSSSCCCEEEEEEEEEEEC-TTSCEEEEEEEC--------------TTSSCCCTTSEECCCEEEEEEEEE-CSS
T ss_pred             EEEEeecCCCcCCcceEEEEEEEEC-CCCeEEEEEEcC--------------CCccCCCCCeEEeeEeeEEEEEEE-CCC
Confidence            9999999999999999999876543 347777665542              257899999999998 89999999 999


Q ss_pred             eEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhc
Q 006208          245 RSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSVS  289 (657)
Q Consensus       245 kT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~kv~  289 (657)
                      +|+|+|++++||+| .||.||+|+++++.++.+|+.|+++++++.
T Consensus       138 ~t~vt~~~~~dp~G-~iP~~lvn~~~~~~~~~~l~~L~k~~~~~~  181 (189)
T 3qsz_A          138 GVDVTYQMHASPGG-SIPSWLANQTVVETPFGTLKALRSHLRQAH  181 (189)
T ss_dssp             SEEEEEEEEECSCS-SSCHHHHHHTTTHHHHHHHHHHHHHHTC--
T ss_pred             eEEEEEEEEeCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence            99999999999999 999999999999999999999999998874
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Back     alignment and structure
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Back     alignment and structure
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6 Back     alignment and structure
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10 Back     alignment and structure
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A Back     alignment and structure
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} Back     alignment and structure
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10 Back     alignment and structure
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A Back     alignment and structure
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Back     alignment and structure
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A Back     alignment and structure
>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A Back     alignment and structure
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Back     alignment and structure
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei} Back     alignment and structure
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8 Back     alignment and structure
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Back     alignment and structure
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Back     alignment and structure
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Back     alignment and structure
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Back     alignment and structure
>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Back     alignment and structure
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii} Back     alignment and structure
>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Back     alignment and structure
>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Back     alignment and structure
>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Back     alignment and structure
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Back     alignment and structure
>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti} Back     alignment and structure
>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides} Back     alignment and structure
>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Back     alignment and structure
>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5 Back     alignment and structure
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5 Back     alignment and structure
>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans} Back     alignment and structure
>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Back     alignment and structure
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5 Back     alignment and structure
>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5 Back     alignment and structure
>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5 Back     alignment and structure
>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli} Back     alignment and structure
>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A* Back     alignment and structure
>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5 Back     alignment and structure
>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis} Back     alignment and structure
>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens} Back     alignment and structure
>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti} Back     alignment and structure
>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 657
d1ln1a_203 d.129.3.2 (A:) Phosphatidylcholine transfer protei 3e-12
d2psoa1197 d.129.3.2 (A:908-1104) Star-related lipid transfer 4e-11
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 3e-12
 Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 22/203 (10%)

Query: 84  SHGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVE-APLDVCLCVSWESALYTKWWPQ 142
           +  +W+L  +T    + YR     T  +   V G +E     +   +  +S    +W   
Sbjct: 19  AGADWQLLVETSGISI-YRLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY 77

Query: 143 YIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINS 202
                         ++   GE +    VK P+P+S R+ +      D   +G  + +I +
Sbjct: 78  V---------KELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILA 128

Query: 203 ISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVP 262
            S                   +  +         A++   ++ S        +     +P
Sbjct: 129 RST----------SMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ-IP 177

Query: 263 PSLINFISRQLIGNGFKLYQKAV 285
             LIN+ ++  + N  K   +A 
Sbjct: 178 SWLINWAAKNGVPNFLKDMARAC 200
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Length = 197 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query657
d1ln1a_203 Phosphatidylcholine transfer protein {Human (Homo 100.0
d2psoa1197 Star-related lipid transfer protein 13 {Human (Hom 99.97
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 99.96
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 99.96
d2d4ra1146 Hypothetical protein TTHA0849 {Thermus thermophilu 98.55
d1t17a_148 Hypothetical protein CC1736 {Caulobacter crescentu 98.49
d2b79a1137 Hypothetical protein SMU440 {Streptococcus mutans 98.13
d2rera1155 Multifunctional enzyme TcmN, cyclase/aromatase dom 98.05
d2pcsa1147 Hypothetical protein GKP20 {Geobacillus kaustophil 97.93
d2ns9a1147 Hypothetical protein APE2225 {Aeropyrum pernix [Ta 97.67
d3cnwa1138 Uncharacterized protein XoxI {Bacillus cereus [Tax 97.29
d1xuva_163 Hypothetical protein MM0500 {Methanosarcina mazei 94.93
d2il5a1164 Hypothetical protein SA2116 {Staphylococcus aureus 83.96
d1xn6a_143 Hypothetical protein BC4709 {Bacillus cereus [TaxI 80.2
d1z94a1143 Hypothetical protein CV1439 {Chromobacterium viola 80.06
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-32  Score=261.27  Aligned_cols=181  Identities=19%  Similarity=0.181  Sum_probs=160.8

Q ss_pred             CCCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEe-CCHHHHHHHHhhcccccccccccccCccccccceeeeeeecC
Q 006208           84 SHGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVE-APLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVG  162 (657)
Q Consensus        84 s~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvID-APl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~  162 (657)
                      ++++|++..+++|++||+|..+ +++++.||++++|+ +|+..+++++.|++++++|++++.       +  ++.+.+.+
T Consensus        19 ~~~~W~~~~~~~gv~vy~~~~~-~~~~~~~k~~~~i~~~~~~~~~~~l~d~~~~~~Wd~~~~-------~--~~~~~~~~   88 (203)
T d1ln1a_          19 AGADWQLLVETSGISIYRLLDK-KTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVK-------E--LYEQECNG   88 (203)
T ss_dssp             TTTTCEEEEEETTEEEEEEEET-TTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEE-------E--EEEEEETT
T ss_pred             CCCCCEEEEecCCEEEEEEecC-CCCcEEEEEEEEEcCCCHHHHHHHHcCHhHhhhhcccce-------E--EEEEccCC
Confidence            3668999999999999999985 89999999999995 899999999999999999999986       3  67778888


Q ss_pred             CeEEEEEEeecccccCcceEEEEEEEeeeCC--CeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEE
Q 006208          163 EQISLVRVKVPWPLSCREGLVHYFSFDYFQD--GLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQ  239 (657)
Q Consensus       163 e~IvY~rvklPWPLSnRDaVl~~~~~d~led--GsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~Iq  239 (657)
                      ..++|+++++|||+++||+|+........++  +.++++..++.             ++.+|+.+|+||+.. .++|.|+
T Consensus        89 ~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~p~~~~~vR~~~~~~~~~l~  155 (203)
T d1ln1a_          89 ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTS-------------MPQLGERSGVIRVKQYKQSLAIE  155 (203)
T ss_dssp             EEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECC-------------BTTBCCCTTSEEECCEEEEEEEE
T ss_pred             cEEEEEEcccccccCCceEEEEEEEEEccCCCCeEEEEEeeccc-------------CCcCcccCCccccceeeEEEEEE
Confidence            9999999999999999999998766554443  34555555543             256899999999999 8999999


Q ss_pred             EecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 006208          240 KVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSV  288 (657)
Q Consensus       240 Plg~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~kv  288 (657)
                      |+++++|+|+|++++|||| .||.||+|++++++++.+|++|+++|.+|
T Consensus       156 ~~~~~~t~v~~~~~~Dp~G-~iP~~lvn~~~~~~~~~~~~~l~k~~~~y  203 (203)
T d1ln1a_         156 SDGKKGSKVFMYYFDNPGG-QIPSWLINWAAKNGVPNFLKDMARACQNY  203 (203)
T ss_dssp             ECSSSSEEEEEEEEECCSS-CCCHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred             ecCCCcEEEEEEEEcCCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999 89999999999999999999999999875
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Back     information, alignment and structure
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Back     information, alignment and structure
>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]} Back     information, alignment and structure