Citrus Sinensis ID: 006217

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650------
MASAAQNQEGVPEILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPFCSEKSSSPPYDEDDDSDPLCAKVSHEILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMVDGINGAASQVQSWHFVDDDLSNGIPDSMHSSDHKSESLVNQAEGFPSSKDENMSHIQLKELQEGNHTKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEHISSDKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPRPKRNYTEMVEQTSDNYDNKKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC
cccccccccccHHHHHHHHHHHHcccccEEEEEEEEcccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHcccEEEccccccccEEEcccccEEEEccccccccccHHHHHHccccccEEEEEEEcccEEEEcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEEccccccHHHHHHHHHHccccEEEEEEEcccccEEEEEEEEEEcccccccHHHHHHHHHHHHccc
ccccccccccccHHHHHHHHHHHHccccEEEEEEEEccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccccEEEHHHHEHEEcccccccccHHHccccEEEEcccccccccHHHHHHHHHHcccEEEEEEEccccEEEEcccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccEHHHHccccccccccccccccccccccEcccccccccccccccHHHHHHHHHHccHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccHHEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEEcccccccHHHHHHHHHHHHccc
masaaqnqegVPEILRKQLAVAVRSIQWSYAIFWSLSAAQQGvlewgdgyyngdikTRKTMqameltpdkiglQRSKQLRELYESLLKGESelaykrpsaalspedltdaEWYYLVCMSFVfssgqglpgralansETIWLcnaqcadskVFSRSLLAKSASIQTVICFPHLDGVIElgvtelvpedpslLQHIKASLldfskpfcseksssppydedddsdplcakvSHEILDTVALeslyspgeenkfdgegvYELHGNineelhldsadecskgcehnhqteESFMVDGINGAASQVQSwhfvdddlsngipdsmhssdhkseslvnqaegfpsskdenmSHIQLKelqegnhtklslldlgivdgaHYRKTLSAIfgssnrltenpcflsvehkssfvswkkggmvkrhwpgIQQNLLKKILfsvplmhggcthrsqkeicrkycpvtmesdnfceehissdkrtenekFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCmysvdseprpkrnyTEMVEQtsdnydnkkldnhkkpwinkrkacdidetdpelnkfvpkdglaDVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTfrgaaiapaGIIEQALWKIAGKC
masaaqnqegvpEILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKTMQAMEltpdkiglqrsKQLRELYESLLKGESelaykrpsaalspEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPFCSEKSSSPPYDEDDDSDPLCAKVSHEILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMVDGINGAASQVQSWHFVDDDLSNGIPDSMHSSDHKSESLVNQAEGFPSSKDENMSHIQLKELQEGNHTKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEhissdkrtenekFMVLRSMVPyisevdkasilsDTIKYLKKLEARVEELEScmysvdseprpkrnYTEMveqtsdnydnkkldnhkkpwinkrkacdidetdpelnkfvpkdgladVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC
MASAAQNQEGVPEILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPFCseksssppydedddsdpLCAKVSHEILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMVDGINGAASQVQSWHFVDDDLSNGIPDSMHSSDHKSESLVNQAEGFPSSKDENMSHIQLKELQEGNHTKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEHISSDKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPRPKRNYTEMVEQTSDNYDNKKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC
*************ILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRK***********************************************LTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDF***************************SHEILDTVALESLY*******FDGEGVYELHGNINEEL*********************FMVDGINGAASQVQSWHFVD*************************************************TKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEH**********KFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMY**********************************WINKRKACDID****ELNKFVPKDGLADVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA***
******************LAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDI***********************************************SPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPF***************************************************************************************************************************************************************************************************************************************************************************KFMVLRSMVPYISEVDKASILSDTIKYLKKLEA**************************************************************************VSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRG***APAGIIEQALWKIAGKC
**********VPEILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPF*****************PLCAKVSHEILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMVDGINGAASQVQSWHFVDDDLSNGIPDS****************GFPSSKDENMSHIQLKELQEGNHTKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEHISSDKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPRPKRNYTEMVEQTSDNYDNKKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC
***********PEILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGD***********L*****GLQRSKQLRELYESLLKG***********ALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPFC*******************************************************************************************************************************************************************AHYRKTLSAIFGSSNRLTENP*******KSS**************PGIQQNLLKKILFSVPLMHG*******************************DKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESC***********************************************************DGLADVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC
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iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASAAQNQEGVPEILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPFCSEKSSSPPYDEDDDSDPLCAKVSHEILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMVDGINGAASQVQSWHFVDDDLSNGIPDSMHSSDHKSESLVNQAEGFPSSKDENMSHIQLKELQEGNHTKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEHISSDKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPRPKRNYTEMVEQTSDNYDNKKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query656 2.2.26 [Sep-21-2011]
Q9FN69637 Transcription factor GLAB yes no 0.934 0.962 0.419 1e-132
Q9CAD0596 Transcription factor EGL1 no no 0.884 0.973 0.428 1e-128
Q8W2F1526 Transcription factor MYC1 no no 0.327 0.408 0.530 2e-62
P13526610 Anthocyanin regulatory Lc N/A no 0.298 0.321 0.561 2e-62
P13027612 Anthocyanin regulatory R- N/A no 0.291 0.312 0.561 9e-62
Q9FT81518 Transcription factor TT8 no no 0.297 0.376 0.517 6e-53
Q9ZPY8566 Transcription factor ABA- no no 0.280 0.325 0.313 2e-19
Q9LNJ5590 Transcription factor bHLH no no 0.263 0.293 0.344 4e-19
O49687589 Transcription factor MYC4 no no 0.257 0.286 0.324 4e-19
Q39204623 Transcription factor MYC2 no no 0.288 0.303 0.314 4e-19
>sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1 Back     alignment and function desciption
 Score =  474 bits (1219), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 284/677 (41%), Positives = 394/677 (58%), Gaps = 64/677 (9%)

Query: 3   SAAQNQEGVPEILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKTMQ 62
           +  QN+  VPE L+K LAV+VR+IQWSY IFWS+SA+Q GVLEWGDGYYNGDIKTRKT+Q
Sbjct: 2   ATGQNRTTVPENLKKHLAVSVRNIQWSYGIFWSVSASQSGVLEWGDGYYNGDIKTRKTIQ 61

Query: 63  AMELTPDKIGLQRSKQLRELYESLLKGES---------ELAYKRPSAALSPEDLTDAEWY 113
           A E+  D++GL+RS+QL ELYESL   ES         ++  +  +AALSPEDL D EWY
Sbjct: 62  ASEIKADQLGLRRSEQLSELYESLSVAESSSSGVAAGSQVTRRASAAALSPEDLADTEWY 121

Query: 114 YLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD 173
           YLVCMSFVF+ G+G+PGR  AN E IWLCNA  ADSKVFSRSLLAKSA+++TV+CFP L 
Sbjct: 122 YLVCMSFVFNIGEGMPGRTFANGEPIWLCNAHTADSKVFSRSLLAKSAAVKTVVCFPFLG 181

Query: 174 GVIELGVTELVPEDPSLLQHIKASLLDFSKPFCSEKSSSPPYDEDDDSDP---LCAKVSH 230
           GV+E+G TE + ED +++Q +K S L+   P+ +   +   Y  D+  DP   L  ++  
Sbjct: 182 GVVEIGTTEHITEDMNVIQCVKTSFLEAPDPYATILPARSDYHIDNVLDPQQILGDEIYA 241

Query: 231 EILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMV 290
            +  T    +       N FD E             H   AD+            +SFM 
Sbjct: 242 PMFSTEPFPTASPSRTTNGFDQE-------------HEQVADD-----------HDSFMT 277

Query: 291 DGINGAASQVQSWHFVDDDLSNGIPDSMHSSDHKSESLVNQAEGFPSSKDENMSHIQLKE 350
           + I G ASQVQSW  +DD+LSN +  S++SSD  S++ V  A G  +         +L +
Sbjct: 278 ERITGGASQVQSWQLMDDELSNCVHQSLNSSDCVSQTFVEGAAGRVAYGARKSRVQRLGQ 337

Query: 351 LQEGNHTKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMV 410
           +QE      +L      D  HY+  +S IF ++++L   P F + + +SSF  WKK    
Sbjct: 338 IQEQQRNVKTLSFDPRNDDVHYQSVISTIFKTNHQLILGPQFRNCDKQSSFTRWKKSSSS 397

Query: 411 KRHWPGI---QQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEHISSDK 467
                 +    Q +LKKI+F VP +H       QKE      P     D      +   K
Sbjct: 398 SSGTATVTAPSQGMLKKIIFDVPRVH-------QKEKLMLDSPEA--RDETGNHAVLEKK 448

Query: 468 RTE--NEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPR--- 522
           R E  NE+FM LR ++P I+++DK SIL DTI+YL++LE RV+ELESC  S D+E R   
Sbjct: 449 RREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELERRVQELESCRESTDTETRGTM 508

Query: 523 --PKRNYTEMVEQTSDNYDNKKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLAD-VK 579
              ++   +  E+TS N  N +  N KK  +N     ++ E +P    F    GL D ++
Sbjct: 509 TMKRKKPCDAGERTSANCANNETGNGKKVSVN-----NVGEAEPADTGFT---GLTDNLR 560

Query: 580 VSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAI 639
           +     +V+IE+RC  RE +LL+IMD I++LHLD++SV SS  DG+L L +    +G+ I
Sbjct: 561 IGSFGNEVVIELRCAWREGVLLEIMDVISDLHLDSHSVQSSTGDGLLCLTVNCKHKGSKI 620

Query: 640 APAGIIEQALWKIAGKC 656
           A  G+I++AL ++A  C
Sbjct: 621 ATPGMIKEALQRVAWIC 637
Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation, but, in association with TTG1 and MYB0/GL1, promotes trichome formation, branching and endoreplication. Regulates also trichome cell wall maturation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Activates the transcription of GL2.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9CAD0|EGL1_ARATH Transcription factor EGL1 OS=Arabidopsis thaliana GN=BHLH2 PE=1 SV=1 Back     alignment and function description
>sp|Q8W2F1|BH012_ARATH Transcription factor MYC1 OS=Arabidopsis thaliana GN=BHLH12 PE=1 SV=1 Back     alignment and function description
>sp|P13526|ARLC_MAIZE Anthocyanin regulatory Lc protein OS=Zea mays GN=LC PE=2 SV=1 Back     alignment and function description
>sp|P13027|ARRS_MAIZE Anthocyanin regulatory R-S protein OS=Zea mays GN=R-S PE=2 SV=1 Back     alignment and function description
>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2 Back     alignment and function description
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2 Back     alignment and function description
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1 Back     alignment and function description
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1 Back     alignment and function description
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query656
150416421656 MYC2 [Citrus sinensis] 1.0 1.0 0.995 0.0
150416419656 MYC2 [Citrus sinensis] 1.0 1.0 0.992 0.0
359489618659 PREDICTED: transcription factor GLABRA 3 1.0 0.995 0.669 0.0
225454234654 PREDICTED: transcription factor GLABRA 3 0.992 0.995 0.661 0.0
187936004654 myc anthocyanin regulatory protein [Viti 0.992 0.995 0.660 0.0
297745295639 unnamed protein product [Vitis vinifera] 0.969 0.995 0.654 0.0
224064031654 predicted protein [Populus trichocarpa] 0.993 0.996 0.637 0.0
82590377651 bHLH33 [Malus x domestica] 0.983 0.990 0.642 0.0
307563497648 bHLH protein [Pyrus pyrifolia] 0.978 0.990 0.642 0.0
224127668649 predicted protein [Populus trichocarpa] 0.984 0.995 0.621 0.0
>gi|150416421|gb|ABR68793.1| MYC2 [Citrus sinensis] Back     alignment and taxonomy information
 Score = 1352 bits (3498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/656 (99%), Positives = 653/656 (99%)

Query: 1   MASAAQNQEGVPEILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKT 60
           MASAAQNQEGVPEILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKT
Sbjct: 1   MASAAQNQEGVPEILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKT 60

Query: 61  MQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAALSPEDLTDAEWYYLVCMSF 120
           MQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAALSPEDLTDAEWYYLVCMSF
Sbjct: 61  MQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAALSPEDLTDAEWYYLVCMSF 120

Query: 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGV 180
           VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVIC PHLDGVIELGV
Sbjct: 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICSPHLDGVIELGV 180

Query: 181 TELVPEDPSLLQHIKASLLDFSKPFCSEKSSSPPYDEDDDSDPLCAKVSHEILDTVALES 240
           TELVPEDPSLLQHIKASLLDFSKPFCSEKSSSPPYDEDDDSDPLCAKVSHEILDTVALES
Sbjct: 181 TELVPEDPSLLQHIKASLLDFSKPFCSEKSSSPPYDEDDDSDPLCAKVSHEILDTVALES 240

Query: 241 LYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMVDGINGAASQV 300
           LYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMVDGINGAASQV
Sbjct: 241 LYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMVDGINGAASQV 300

Query: 301 QSWHFVDDDLSNGIPDSMHSSDHKSESLVNQAEGFPSSKDENMSHIQLKELQEGNHTKLS 360
           QSWHFVDDDLSNGIPDSMHSS HKSESLVNQAEGFPSSKDENMSHIQLKELQEGNHTKLS
Sbjct: 301 QSWHFVDDDLSNGIPDSMHSSGHKSESLVNQAEGFPSSKDENMSHIQLKELQEGNHTKLS 360

Query: 361 LLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQN 420
           LLDLGI DGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQN
Sbjct: 361 LLDLGIDDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQN 420

Query: 421 LLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEHISSDKRTENEKFMVLRSM 480
           LLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEHISSDKRTENEKFMVLRSM
Sbjct: 421 LLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEHISSDKRTENEKFMVLRSM 480

Query: 481 VPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPRPKRNYTEMVEQTSDNYDN 540
           VPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPRPKRNYTEMVEQTSDNYDN
Sbjct: 481 VPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPRPKRNYTEMVEQTSDNYDN 540

Query: 541 KKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSIQEMDVLIEMRCPSREYIL 600
           KKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSIQEMDVLIEMRCPSREYIL
Sbjct: 541 KKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSIQEMDVLIEMRCPSREYIL 600

Query: 601 LDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC 656
           LDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC
Sbjct: 601 LDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC 656

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|150416419|gb|ABR68792.1| MYC2 [Citrus sinensis] Back     alignment and taxonomy information
>gi|359489618|ref|XP_003633950.1| PREDICTED: transcription factor GLABRA 3 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225454234|ref|XP_002274163.1| PREDICTED: transcription factor GLABRA 3 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|187936004|gb|ABM92332.3| myc anthocyanin regulatory protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745295|emb|CBI40375.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224064031|ref|XP_002301357.1| predicted protein [Populus trichocarpa] gi|222843083|gb|EEE80630.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|82590377|gb|ABB84474.1| bHLH33 [Malus x domestica] Back     alignment and taxonomy information
>gi|307563497|gb|ADN52335.1| bHLH protein [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|224127668|ref|XP_002320131.1| predicted protein [Populus trichocarpa] gi|222860904|gb|EEE98446.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query656
TAIR|locus:2026629596 EGL3 "AT1G63650" [Arabidopsis 0.295 0.325 0.646 3.5e-123
TAIR|locus:504954829637 GL3 "AT5G41315" [Arabidopsis t 0.309 0.318 0.613 8.2e-123
TAIR|locus:2127023580 ATMYC1 [Arabidopsis thaliana ( 0.300 0.339 0.579 6.6e-102
TAIR|locus:2118524518 TT8 "AT4G09820" [Arabidopsis t 0.285 0.361 0.529 8.9e-76
UNIPROTKB|Q948Y2451 Plw-OSB2 "R-type basic helix-l 0.314 0.456 0.557 3.2e-75
UNIPROTKB|Q7XPS7567 OSJNBa0065O17.4 "OSJNBa0065O17 0.283 0.328 0.529 2.6e-65
UNIPROTKB|Q336P5699 Os10g0575000 "Os10g0575000 pro 0.277 0.260 0.348 6.4e-26
UNIPROTKB|Q53L62458 LOC_Os11g15210 "Helix-loop-hel 0.254 0.364 0.354 6.5e-26
TAIR|locus:2178555592 MYC3 "AT5G46760" [Arabidopsis 0.274 0.304 0.296 2.5e-25
TAIR|locus:2035237590 AT1G01260 "AT1G01260" [Arabido 0.263 0.293 0.354 3.3e-25
TAIR|locus:2026629 EGL3 "AT1G63650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 685 (246.2 bits), Expect = 3.5e-123, Sum P(3) = 3.5e-123
 Identities = 130/201 (64%), Positives = 164/201 (81%)

Query:    11 VPEILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKTMQAMELTPDK 70
             VP+ L+KQLAV+VR+IQWSY IFWS+SA+Q GVLEWGDGYYNGDIKTRKT+QA E+  D+
Sbjct:     9 VPDNLKKQLAVSVRNIQWSYGIFWSVSASQPGVLEWGDGYYNGDIKTRKTIQAAEVKIDQ 68

Query:    71 IGLQRSKQLRELYESL------LKGESELAYKRPSAALSPEDLTDAEWYYLVCMSFVFSS 124
             +GL+RS+QLRELYESL        G S++  +  +AALSPEDLTD EWYYLVCMSFVF+ 
Sbjct:    69 LGLERSEQLRELYESLSLAESSASGSSQVTRRASAAALSPEDLTDTEWYYLVCMSFVFNI 128

Query:   125 GQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELV 184
             G+G+PG AL+N E IWLCNA+ ADSKVF+RSLLAKSAS+QTV+CFP L GV+E+G TE +
Sbjct:   129 GEGIPGGALSNGEPIWLCNAETADSKVFTRSLLAKSASLQTVVCFPFLGGVLEIGTTEHI 188

Query:   185 PEDPSLLQHIKASLLDFSKPF 205
              ED +++Q +K   L+ + P+
Sbjct:   189 KEDMNVIQSVKTLFLE-APPY 208
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0009957 "epidermal cell fate specification" evidence=RCA;IMP
GO:0001708 "cell fate specification" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009913 "epidermal cell differentiation" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
TAIR|locus:504954829 GL3 "AT5G41315" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127023 ATMYC1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118524 TT8 "AT4G09820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q948Y2 Plw-OSB2 "R-type basic helix-loop-helix protein" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XPS7 OSJNBa0065O17.4 "OSJNBa0065O17.4 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q336P5 Os10g0575000 "Os10g0575000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q53L62 LOC_Os11g15210 "Helix-loop-helix DNA-binding domain, putative" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2178555 MYC3 "AT5G46760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035237 AT1G01260 "AT1G01260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FN69GL3_ARATHNo assigned EC number0.41940.93440.9623yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query656
pfam14215171 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB trans 3e-80
smart0035353 smart00353, HLH, helix loop helix domain 7e-07
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 1e-05
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 0.001
>gnl|CDD|222598 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
 Score =  251 bits (643), Expect = 3e-80
 Identities = 101/183 (55%), Positives = 123/183 (67%), Gaps = 13/183 (7%)

Query: 15  LRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQ 74
           L+++L   V S QWSYAIFW LS  Q GVL WGDGYYNG+IKTRKT        +++GLQ
Sbjct: 1   LQQRLQALVESEQWSYAIFWQLSPDQSGVLGWGDGYYNGEIKTRKT------VAEELGLQ 54

Query: 75  RSKQLRELYESLLKGESELAYKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALA 134
           R K LRELY  L          R +AALSPEDLTD EW+YLV M+F F  G+GLPG+A A
Sbjct: 55  RKKVLRELYSLLSG-------SRDAAALSPEDLTDTEWFYLVSMTFSFPPGEGLPGKAFA 107

Query: 135 NSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHI 194
           +   IWL  A   DS   SRS LA+SA IQT++C P   GV+ELG TE +PED +L+QH+
Sbjct: 108 SGSHIWLSGANELDSSNCSRSWLAQSAGIQTIVCIPVPGGVVELGSTEKIPEDLNLVQHV 167

Query: 195 KAS 197
           K+ 
Sbjct: 168 KSL 170

This is the N-terminal region of a family of MYB and MYC transcription factors. The DNA-binding HLH domain is further downstream, pfam00010. Members of the MYB and MYC family regulate the biosynthesis of phenylpropanoids in several plant species (DOI:10.1007/s11295-009-0232-y). Length = 171
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 656
PF14215163 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription fa 100.0
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 98.85
smart0035353 HLH helix loop helix domain. 98.84
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 98.75
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 98.04
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 97.92
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 97.84
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 97.84
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 97.62
KOG1318411 consensus Helix loop helix transcription factor EB 97.46
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 97.33
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 97.31
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 97.06
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 96.86
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 96.73
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 96.64
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 96.57
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 96.51
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 96.5
PRK0019490 hypothetical protein; Validated 96.31
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 96.31
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 96.26
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 96.22
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 96.17
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 96.17
PRK05007884 PII uridylyl-transferase; Provisional 96.16
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 96.06
KOG0561 373 consensus bHLH transcription factor [Transcription 95.86
KOG4304250 consensus Transcriptional repressors of the hairy/ 95.71
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 95.7
PRK00275895 glnD PII uridylyl-transferase; Provisional 95.55
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 95.53
PRK01759854 glnD PII uridylyl-transferase; Provisional 95.47
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 95.42
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 95.32
PRK05092931 PII uridylyl-transferase; Provisional 95.07
PRK04374869 PII uridylyl-transferase; Provisional 94.76
PRK04435147 hypothetical protein; Provisional 94.72
KOG3960284 consensus Myogenic helix-loop-helix transcription 94.63
PRK03381 774 PII uridylyl-transferase; Provisional 94.6
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 94.6
PRK03059856 PII uridylyl-transferase; Provisional 94.39
KOG4029228 consensus Transcription factor HAND2/Transcription 94.38
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 94.06
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 93.95
PRK03381774 PII uridylyl-transferase; Provisional 93.88
PRK01759 854 glnD PII uridylyl-transferase; Provisional 93.64
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 93.35
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 93.0
PRK05007 884 PII uridylyl-transferase; Provisional 92.92
PLN0321793 transcription factor ATBS1; Provisional 92.7
PRK03059 856 PII uridylyl-transferase; Provisional 92.56
cd0211660 ACT ACT domains are commonly involved in specifica 92.48
PRK00275 895 glnD PII uridylyl-transferase; Provisional 92.4
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 92.01
PRK06027 286 purU formyltetrahydrofolate deformylase; Reviewed 91.85
PRK08577136 hypothetical protein; Provisional 91.66
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 91.51
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 91.42
PRK13011 286 formyltetrahydrofolate deformylase; Reviewed 91.39
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 91.3
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 91.25
PRK05092 931 PII uridylyl-transferase; Provisional 91.15
TIGR00655 280 PurU formyltetrahydrofolate deformylase. This mode 90.19
PRK07334403 threonine dehydratase; Provisional 90.17
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 89.96
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 89.59
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 89.45
PRK04374 869 PII uridylyl-transferase; Provisional 89.12
PRK13010 289 purU formyltetrahydrofolate deformylase; Reviewed 88.47
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 87.19
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 86.75
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 85.96
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 85.71
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 84.88
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 83.96
cd0490474 ACT_AAAH ACT domain of the nonheme iron-dependent, 82.46
cd0490169 ACT_3PGDH C-terminal ACT (regulatory) domain of D- 82.26
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 81.93
PRK10872743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 81.13
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 80.98
PF1371063 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. 80.69
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
Probab=100.00  E-value=6.5e-53  Score=407.62  Aligned_cols=163  Identities=51%  Similarity=0.879  Sum_probs=150.8

Q ss_pred             HHHHHHHhhcCCCcEEEEeeecCCCCCccEEeccceecCCcccccccccccCCchhhhhHHHHHHHHHHHhhhccccccc
Q 006217           15 LRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELA   94 (656)
Q Consensus        15 Lq~~L~~~~~~~~WtYAiFWq~s~~~~gvL~WgDGyy~g~~k~~~~~~~~e~~~~~~~~~r~~~lreL~~sl~~g~~~~~   94 (656)
                      ||++|+.+|++.+|+||||||+++++ .+|+||||||+|++++++..   +    +.+++|+++||+||.++.       
T Consensus         1 Lq~~Lr~lv~~~~W~YaVFWk~~~~~-~~L~W~DG~~~g~~~~~~~~---~----~~~~~~~~~l~~l~~~~~-------   65 (163)
T PF14215_consen    1 LQQRLRSLVENSQWTYAVFWKLSPDN-SVLVWGDGYCNGPKETRKNG---E----EEQEQRSKVLRELHSSFS-------   65 (163)
T ss_pred             ChHHHHHHhCCCCCcEEEEeEEcCCC-CeeeEcceeecCCcccccch---h----hccchhhhHHHHHhhhcc-------
Confidence            79999999999999999999999777 59999999999998777644   1    345899999999995553       


Q ss_pred             cCCCCCCCCCCCCCcchheeeeeeeeeecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeCCe
Q 006217           95 YKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDG  174 (656)
Q Consensus        95 ~~~~~~al~~edltd~Ewfyl~sms~sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~~G  174 (656)
                          .+++.+++|+|+||||++||+|+|  |+|+|||||++|+|+||++++.++.+.|+|+.+|+++|||||||||+.+|
T Consensus        66 ----~~~~~~~~v~~~e~f~~~s~~~sf--g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~IPv~~G  139 (163)
T PF14215_consen   66 ----SYALSPEEVTDTEWFYLVSMSYSF--GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCIPVPNG  139 (163)
T ss_pred             ----ccccccchhHHHHHHhhceeeEEe--cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEEEecCC
Confidence                235679999999999999999999  99999999999999999999999999999999999999999999999999


Q ss_pred             EEEecccccccCChhHHHHHHHHh
Q 006217          175 VIELGVTELVPEDPSLLQHIKASL  198 (656)
Q Consensus       175 VvELGSt~~v~Ed~~lv~~ik~~F  198 (656)
                      |||||||++|+||++||++||++|
T Consensus       140 VvELGSt~~I~Ed~~~v~~vk~~F  163 (163)
T PF14215_consen  140 VVELGSTEKIPEDSNLVQRVKSLF  163 (163)
T ss_pred             EEEeeeeeeeccCHHHHHHHHhhC
Confidence            999999999999999999999998

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query656
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 3e-07
1hlo_A80 Protein (transcription factor MAX); transcriptiona 2e-05
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 5e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 3e-04
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 65.6 bits (159), Expect = 3e-11
 Identities = 92/697 (13%), Positives = 191/697 (27%), Gaps = 227/697 (32%)

Query: 26  IQWSYA-IFWSLSAAQQGVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSK--QLREL 82
            Q+ Y  I   LS  +   ++  D     D+  +  +   E+  D I + +        L
Sbjct: 14  HQYQYKDI---LSVFEDAFVDNFDCKDVQDM-PKSILSKEEI--DHIIMSKDAVSGTLRL 67

Query: 83  YESLLKGESELAYKRPSAALSPEDLTDAEW-----------------YYLVCMSFVFSSG 125
           + +LL  + E+  K     L      + ++                  Y+     +++  
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRI----NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 126 QGLPGRALANSETI-----WLCNAQCADSKV------FSRSLLAKSA--SIQTVICFPHL 172
           Q      ++  +        L   + A + +        ++ +A     S +        
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-- 181

Query: 173 DGV--IELGVTELVPEDPSLLQHIKASLLDFSKPFCS--EKSSSPPYDEDDDSDPLCAKV 228
             +  + L          ++L+ ++  L      + S  + SS+           L   +
Sbjct: 182 FKIFWLNLKNCN---SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 229 SHE-------ILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHN 281
             +       +L  V      +    N F+                          C   
Sbjct: 239 KSKPYENCLLVLLNV-----QNAKAWNAFNL------------------------SC--- 266

Query: 282 HQ----TEESFMVDGINGAASQVQSWHFVDDDLSNGI-PD---SMHSS--DHKSESLVNQ 331
            +    T    + D ++ A +     H   D  S  + PD   S+     D + + L  +
Sbjct: 267 -KILLTTRFKQVTDFLSAATTT----HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 332 A-EGFP--------SSKD-----ENMSHIQLKELQEGNHTKLSLL----------DLGI- 366
                P        S +D     +N  H+   +L     + L++L           L + 
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 367 VDGAHY-RKTLSAIFGSSNRLTENPCFLSVEHKSSFV-SWKKGGMVKRHWPGIQQNLLKK 424
              AH     LS I+    + ++    ++  HK S V    K   +      I   L  K
Sbjct: 382 PPSAHIPTILLSLIWFDVIK-SDVMVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVK 438

Query: 425 ILFSVPLMHGGCTHRS---QKEICRKYCP---VTMESDN-FCEE---HISSDKRTE---- 470
           +     L      HRS      I + +     +    D  F      H+ + +  E    
Sbjct: 439 LENEYAL------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 471 ------NEKFM---VLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEP 521
                 + +F+   +      + +     + L     Y               Y  D++P
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-------------YICDNDP 539

Query: 522 RPKRNYTEMVEQTSDNYDNKKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVS 581
           +    Y  +V                                  +  F+PK         
Sbjct: 540 K----YERLVN--------------------------------AILDFLPKIE------- 556

Query: 582 IQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVV 618
               + LI       + + + +M     +  +A+  V
Sbjct: 557 ----ENLI--CSKYTDLLRIALMAEDEAIFEEAHKQV 587
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query656
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.28
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.13
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.11
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.1
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.07
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.04
4ati_A118 MITF, microphthalmia-associated transcription fact 99.02
1a0a_A63 BHLH, protein (phosphate system positive regulator 98.98
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 98.93
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 98.92
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 98.8
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 98.37
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 98.31
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.15
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 97.94
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 97.66
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 97.11
4ath_A83 MITF, microphthalmia-associated transcription fact 96.82
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 96.46
1u8s_A 192 Glycine cleavage system transcriptional repressor, 95.63
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 95.22
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 95.07
2nyi_A 195 Unknown protein; protein structure initiative, PSI 94.92
2nyi_A195 Unknown protein; protein structure initiative, PSI 94.85
1u8s_A192 Glycine cleavage system transcriptional repressor, 94.25
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 94.15
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 93.7
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 92.92
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 92.74
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 92.59
1vhm_A195 Protein YEBR; structural genomics, unknown functio 92.55
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 92.49
2jhe_A 190 Transcription regulator TYRR; aromatic hydrocarbon 91.68
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 91.53
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 91.42
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 90.93
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 90.61
3n0v_A 286 Formyltetrahydrofolate deformylase; formyl transfe 90.55
3hcy_A151 Putative two-component sensor histidine kinase PR; 90.47
3obi_A 288 Formyltetrahydrofolate deformylase; structural gen 90.24
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 89.47
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 89.23
2qyb_A181 Membrane protein, putative; GAF domain, domain of 88.93
3o1l_A 302 Formyltetrahydrofolate deformylase; structural gen 88.25
3lou_A 292 Formyltetrahydrofolate deformylase; structural gen 87.71
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 87.46
2f1f_A164 Acetolactate synthase isozyme III small subunit; f 86.11
1y7p_A 223 Hypothetical protein AF1403; structural genomics, 85.1
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 84.83
3nrb_A 287 Formyltetrahydrofolate deformylase; N-terminal ACT 83.31
2pc6_A165 Probable acetolactate synthase isozyme III (small; 83.14
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 81.32
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.28  E-value=1.6e-12  Score=111.42  Aligned_cols=60  Identities=23%  Similarity=0.396  Sum_probs=55.6

Q ss_pred             ccchhhHHHhhH---HHhHHHHHhcCCCC-CCCcccchHHHHHHHHHHHHHHHHHHHhccccCC
Q 006217          459 CEEHISSDKRTE---NEKFMVLRSMVPYI-SEVDKASILSDTIKYLKKLEARVEELESCMYSVD  518 (656)
Q Consensus       459 ~~~h~~~ER~RR---n~~f~~LrslvP~~-~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l~  518 (656)
                      ..+|+.+||+||   |+.|..|++|||.. .|+||++||.+||+||+.|+.+++.|+.++..+.
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~   70 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999   99999999999987 8999999999999999999999999999886543
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 656
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 5e-10
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 2e-06
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 5e-06
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 9e-06
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 1e-05
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 3e-05
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 1e-04
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 5e-04
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (129), Expect = 5e-10
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 471 NEKFMVLRSMVPYI-SEVDKASILSDTIKYLKKLEARVEELES 512
           N+K + L+ +V    +++ K+ +L   I Y+K L+    +L  
Sbjct: 5   NDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQ 47
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query656
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.07
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.06
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.03
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 98.99
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 98.96
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 98.96
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 98.94
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 98.83
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 97.16
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 96.38
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 96.07
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 94.34
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 93.35
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 93.31
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 88.4
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 88.23
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.2e-11  Score=100.81  Aligned_cols=59  Identities=24%  Similarity=0.405  Sum_probs=53.8

Q ss_pred             ccchhhHHHhhH---HHhHHHHHhcCCCC-CCCcccchHHHHHHHHHHHHHHHHHHHhccccC
Q 006217          459 CEEHISSDKRTE---NEKFMVLRSMVPYI-SEVDKASILSDTIKYLKKLEARVEELESCMYSV  517 (656)
Q Consensus       459 ~~~h~~~ER~RR---n~~f~~LrslvP~~-~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l  517 (656)
                      ..+|+.+||+||   |+.|..|++|||.. .|++|++||..||+||+.|+.+++.|..++..+
T Consensus         7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~l   69 (80)
T d1am9a_           7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999   99999999999975 689999999999999999999999999877543
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure