Citrus Sinensis ID: 006220

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650------
Protein Sequence
MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHccEEEEEcHHHHHHHHHHHHHccccHHHHHHHHHEEEEEccccccccccHHHHHHHHcccHHHHHHHccccccccccHHHHHHHHHHccccccHHHHHcccccHHcccccccccccccccHHHHHccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHccccccEEEcccccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccccEEccccccccccccccccEEEcccccccEEEcccccccEEEEEEcccccEEEEEcccccEEEEcccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEccccccccccEEEEcccccEEEEccccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEcccccccccEEEEEEcccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHccHHHHHHHHcccEEEEEccHHHHHHHHHHHHcccHHHHHHHHHHEEEEEccccccccccHHHHHHHHcccHHHHcccccccccccccccHccHHHccccccccccccccHHHHHHHHHccccccccccccccHHccccccccccccccccccccccccccccccccEEEEccccccEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEccccccccccccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccccEEEEEEcccccEEEEEEEEcc
Coil and Loop (DISEMBL)
MDELQVVEFVATYLKKKGFSEAENALQAEIQRnkssnntnpidilndpelsKFFRtfsesedgparyqdeySKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKlegvlspshleEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINerinfqvspgqpssisddAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRlektglisdsekaegenkeaeidenkkrpveggkqgaSIKKLKKdkainataktsrleantvstaprvkpdlalpvmpteVEQSILEDLRNRvhlssaalpsvsfytfinthnglncasisqdgslvaggfsdsslKVWDMAKLGQQAVssglqgendttprediigpngrkrsytlyqghsgpvysasfsplgdfilsssadTTIRLWSTKLNANlvcykghnypvwdvqfnpqghyfassshdrtariwsmdriqplrimaghlsdvdcvRWHINCnyiatgssdktvrlwdvssgecvRIFIGHRSMILSlamspdgrymasgdedgTIMMWDlasgrcvtplmghtscVWTLAYScegsllasgsadctvKLWDVTTSTKVLKTEEksgtnrlrslktlptkstpvyslqvlr
Flexible Loop (DISEMBL)
MDELQVVEFVATYLKKKGFSEAENALQAEiqrnkssnntnpidilNDPELSKFFRTfsesedgparyqDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKtglisdsekaegenkeaeidenkkrpveggkqgasikklkkdkainataktsrleantvstaprvkpdlalpvMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVssglqgendttprediigpngRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNyiatgssdktvrLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTtstkvlkteeksgtnrlrslktlptkstpvyslqvlr
Low Complexity Region (SEG)
MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR
Disordered region (IsUnstruct)
*****VVEFVATYLKK*****************************************************EYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQV************EIVTLIGS******QINQKEVHWGLLE*****************************************************************************************SILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK*******************************YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV********************************
Disordered Region (DISOPRED)
****QVVEFVATYLKKKGFSEAEN*************************************DGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVS********************************HWGLLEDSLENR**************************************************************************PVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAV***LQ*ENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL*TEEKSGTNRLRSLKTLPTKSTPVYSLQVLR
Disordered Region (DISEMBL)
MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDS*************ENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR
Disordered Region (DISPRO)
*DELQVVEFVATYLKKKGFSEAENALQAEI**********************F*R****SEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLE***E*****************************************************************VKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	656	2.2.26 [Sep-21-2011]
Q8C092	801	Transcription initiation	yes	no	0.881	0.721	0.368	1e-111
Q15542	800	Transcription initiation	yes	no	0.881	0.722	0.373	1e-111
O13282	643	Transcription initiation	yes	no	0.887	0.905	0.335	1e-104
P38129	798	Transcription initiation	yes	no	0.907	0.745	0.333	5e-98
P49846	704	Transcription initiation	yes	no	0.881	0.821	0.332	3e-89
O74319	642	Transcription initiation	no	no	0.875	0.894	0.343	3e-89
Q8SQS4	556	Transcription initiation	yes	no	0.788	0.929	0.312	4e-75
O75529	589	TAF5-like RNA polymerase	no	no	0.504	0.561	0.435	1e-73
Q91WQ5	589	TAF5-like RNA polymerase	no	no	0.525	0.585	0.418	1e-73
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.417	0.179	0.346	7e-46

>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1

 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/635 (36%), Positives = 348/635 (54%), Gaps = 57/635 (8%)

Query: 42  IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCF 101
           + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +
Sbjct: 191 VAVEDQPDVSAVLSAYNQQGD-PTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMY 249

Query: 102 MDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIK 161
           ++LV   H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++
Sbjct: 250 LELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLR 309

Query: 162 ICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAAN 220
           I + SY+LL ++L + Q+ ++  I+ E +   +  G P S    DA + +L G   +A  
Sbjct: 310 IYRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAG---EAKR 366

Query: 221 QINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKK 280
           + N+ +V +GLL++                       E E+  + +      ++G   KK
Sbjct: 367 EANKSKVFFGLLKEP----------------------EIEVPLDDEDEEGENEEGKPKKK 404

Query: 281 LKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRN------RVHL 334
             K  +I + +K            P   P   +P +P   +   L+ + N      RV L
Sbjct: 405 KPKKDSIGSKSKKQD---------PNAPPQNRIP-LPELKDSDKLDKIMNMKETTKRVRL 454

Query: 335 SSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMA----KLGQQAVSS 390
               LPS+ FYTF+N + GL    ++ D SL+AGGF+DS+++VW +     +  +QA   
Sbjct: 455 GPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDL 514

Query: 391 GLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
            L  +      E I+          LY GHSGPVY ASFSP  +++LSSS D T+RLWS 
Sbjct: 515 SLIDKESDDVLERIMDEKTASELKILY-GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSL 573

Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
           +    LV YKGHNYPVWD QF+P G+YF S  HDR AR+W+ D  QPLRI AGHL+DV+C
Sbjct: 574 QTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNC 633

Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
            R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH+  I SL  SP+GR++A+G  DG 
Sbjct: 634 TRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGR 693

Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE- 629
           +++WD+  G  V  L GHT  V +L +S +G +LASGS D TV+LWD   + + L+T++ 
Sbjct: 694 VLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAVKAFEDLETDDF 753

Query: 630 KSGTNRLR--------SLKTLPTKSTPVYSLQVLR 656
            + T  +          L T  TKSTPV  L   R
Sbjct: 754 TTATGHINLPENSQELLLGTYMTKSTPVVHLHFTR 788

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.
Mus musculus (taxid: 10090)

>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3

 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/635 (37%), Positives = 348/635 (54%), Gaps = 57/635 (8%)

Query: 42  IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCF 101
           + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +
Sbjct: 190 VAVEDQPDVSAVLSAYNQQGD-PTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMY 248

Query: 102 MDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIK 161
           ++LV   H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++
Sbjct: 249 LELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLR 308

Query: 162 ICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAAN 220
           I + SY+LL ++L + Q+ ++  I+ E +   +  G P S    DA + +L G   +A  
Sbjct: 309 ISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAG---EAKR 365

Query: 221 QINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKK 280
           + N+ +V +GLL                        KE EI+       E G+      K
Sbjct: 366 EANKSKVFFGLL------------------------KEPEIEVPLDDEDEEGENEEGKPK 401

Query: 281 LKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRN------RVHL 334
            KK K  +  +K+ + +       P   P   +P +P   +   L+ + N      RV L
Sbjct: 402 KKKPKKDSIGSKSKKQD-------PNAPPQNRIP-LPELKDSDKLDKIMNMKETTKRVRL 453

Query: 335 SSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMA----KLGQQAVSS 390
               LPS+ FYTF+N + GL    ++ D SL+AGGF+DS+++VW +     +  +QA   
Sbjct: 454 GPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDL 513

Query: 391 GLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
            L  +      E I+          LY GHSGPVY ASFSP  +++LSSS D T+RLWS 
Sbjct: 514 SLIDKESDDVLERIMDEKTASELKILY-GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSL 572

Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
           +    LV YKGHNYPVWD QF+P G+YF S  HDR AR+W+ D  QPLRI AGHL+DV+C
Sbjct: 573 QTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNC 632

Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
            R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH+  I SL  SP+GR++A+G  DG 
Sbjct: 633 TRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGR 692

Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE- 629
           +++WD+  G  V  L GHT  V +L +S +G +LASGS D TV+LWD   + + L+T++ 
Sbjct: 693 VLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAIKAFEDLETDDF 752

Query: 630 KSGTNRLR--------SLKTLPTKSTPVYSLQVLR 656
            + T  +          L T  TKSTPV  L   R
Sbjct: 753 TTATGHINLPENSQELLLGTYMTKSTPVVHLHFTR 787

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.

Homo sapiens (taxid: 9606)

>sp|O13282|TAF5_SCHPO Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf5 PE=1 SV=1

 Score =  379 bits (974), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/685 (33%), Positives = 356/685 (51%), Gaps = 103/685 (15%)

Query: 9   FVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQ 68
            V  YL KKG+S  E  L+ E   +  S       I                E+ P  Y 
Sbjct: 15  IVLDYLAKKGYSRTEAMLRLEASGSGVSVEEKLKSI----------------EETPDAYT 58

Query: 69  DEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMH 128
             Y+ LR W  SSL+LYK EL  +L+P+F+H +++L+++ H + A+ F+  F++DH  +H
Sbjct: 59  HTYTILRDWVDSSLELYKAELHRILFPIFVHSYLNLLSQDHYEAAKQFYELFKDDHTDLH 118

Query: 129 LRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGI 185
             D++ L+ +  PSH+ E   A   R +K  +   + +++LLL +L +  S   + ++ +
Sbjct: 119 DFDVKNLKSLSLPSHVAEDRTAQQYRQNKYQLHFSRITFDLLLHFLFENVSNGGSIIIKL 178

Query: 186 INERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLEN------- 238
           IN+ I+  + PG+P+ + +              A  IN++E   G+   S E        
Sbjct: 179 INQHIDIHIVPGRPTVLEN--------------AKVINEQE---GITGQSFERGDAQLQP 221

Query: 239 -RLEKTGLISDSEKA-----EGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAK 292
            +L++  +  + EK      E E+   + D N + P         +K+ +K    NA   
Sbjct: 222 VKLQQMPMDKEMEKIVEMDLEEEDMMHQNDPNNQSP-------KLLKEFRKLHEPNAEDA 274

Query: 293 TSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSS-AALPSVSFYTFINTH 351
            SR   + +   P    D+      +EVE   ++D   R+HL   A+LPSV  YTF +T+
Sbjct: 275 PSR---DYIPLPPHKGVDIL-----SEVEA--VKDWSKRLHLGPRASLPSVCMYTFHHTN 324

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII-GPNGR 410
           N +NCA  S D +++A GF +S +++W             ++ +  + P+   +   +G 
Sbjct: 325 NNMNCAEFSPDSTMIACGFQESYIRLW------------SIKADKKSLPKSTSVEDSDGS 372

Query: 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ 470
            R  +    HSGPVY  +FSP   ++LS S D + RLWS      LV YKGH  PVWDV 
Sbjct: 373 VRLLS----HSGPVYGTTFSPDNKYLLSCSEDASARLWSVDTKTALVAYKGHTGPVWDVA 428

Query: 471 FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVR 530
           F P GHYFA++SHD+TA++WS D I PLR+ AGHLSDVDCV +H N  Y+ TGSSDKT R
Sbjct: 429 FGPFGHYFATASHDQTAQLWSCDHIYPLRVFAGHLSDVDCVTFHPNSAYVLTGSSDKTCR 488

Query: 531 LWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS 590
           LWDV  G  VR+F GH   + ++A++PDG  MAS D +G I +WD+ +GR +  + GH  
Sbjct: 489 LWDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRG 548

Query: 591 CVWTLAYSCEGSLLASGSADCTVKLWDV------------TTSTKVLKTEEKSGTNRLRS 638
            +++L++S E ++L SG +DCTV+ WDV             T + V     K+ T    +
Sbjct: 549 NIYSLSFSRESTVLVSGGSDCTVRAWDVFKTNYNNPVSSSLTGSVVTPFSAKTSTFNEVN 608

Query: 639 LKTLP-------TKSTPVYSLQVLR 656
             T P       TK TP++++   R
Sbjct: 609 WSTSPDQMVALYTKQTPIFNVSFTR 633

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38129|TAF5_YEAST Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF5 PE=1 SV=1

 Score =  359 bits (921), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 228/684 (33%), Positives = 355/684 (51%), Gaps = 89/684 (13%)

Query: 9   FVATYLKKKGFSEAENALQAEIQRNKSSNN-----------------------------T 39
            V  YL KKG+   E  L+AE  R  +  N                             +
Sbjct: 63  IVLEYLNKKGYHRTEAMLRAESGRTLTPQNKQSPANTKTGKFPEQSSIPPNPGKTAKPIS 122

Query: 40  NPIDILN--DPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVF 97
           NP ++ +  D E         E  + P  Y   YS L++W  SSL++YK EL +++YP+F
Sbjct: 123 NPTNLSSKRDAEGGIVSSGRLEGLNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIF 182

Query: 98  IHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSK 157
           I+ F++LVAK  +  AR FF+ F  D +  H  ++ +L  V S  H++E E A + +  K
Sbjct: 183 IYLFLNLVAKNPVY-ARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHK 241

Query: 158 VNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQD 217
             I + + +  LLL +L++ +S     II+  IN  + P    S++   ++   I    D
Sbjct: 242 YRITMSKTTLNLLLYFLNENESIGGSLIIS-VINQHLDPNIVESVTAREKLADGIKVLSD 300

Query: 218 AAN-------QINQKEVHWGLL--EDSLENRLEKTGLISDSEKAE-----------GENK 257
           + N       ++N   V  G    ++     +E    I D ++ +           G N 
Sbjct: 301 SENGNGKQNLEMNSVPVKLGPFPKDEEFVKEIETELKIKDDQEKQLNQQTAGDNYSGANN 360

Query: 258 EAEIDENKKRPVEGGKQGASI--------------KKLKKDKAINATAKTSRLEANTVST 303
              + E K    E  K                   +K + +  ++   K S L +     
Sbjct: 361 RTLLQEYKAMNNEKFKDNTGDDDKDKIKDKIAKDEEKKESELKVDGEKKDSNLSSPARDI 420

Query: 304 APRVKPDLALPVMPTEVEQSILEDLRNRVHLSSA--ALPSVSFYTFINTHNGLNCASISQ 361
            P + P  AL +   ++E   +++ R+ + L +   ALPSV  YTF NT+  ++C   S 
Sbjct: 421 LP-LPPKTALDL---KLEIQKVKESRDAIKLDNLQLALPSVCMYTFQNTNKDMSCLDFSD 476

Query: 362 DGSLVAGGFSDSSLKVW--DMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           D  + A GF DS +K+W  D + L    ++     +++    + ++G             
Sbjct: 477 DCRIAAAGFQDSYIKIWSLDGSSLNNPNIALNNNDKDEDPTCKTLVG------------- 523

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSG VYS SFSP   ++LS S D T+RLWS   +  LV YKGHN+PVWDV F+P GHYFA
Sbjct: 524 HSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFA 583

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           ++SHD+TAR+WS D I PLRI AGHL+DVDCV +H N  Y+ TGSSDKT R+WDVS+G+ 
Sbjct: 584 TASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDS 643

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYS 598
           VR+F+GH + ++S+A+ PDGR++++G EDG I +WD+ +G+ +  + GH  + +++L+YS
Sbjct: 644 VRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYS 703

Query: 599 CEGSLLASGSADCTVKLWDVTTST 622
            EG++L SG AD TV++WD+  +T
Sbjct: 704 KEGNVLISGGADHTVRVWDLKKAT 727

Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modification (histone acetylation by TAF1), facilitation of DNA opening and initiation of transcription. SAGA is involved in RNA polymerase II-dependent transcriptional regulation of approximately 10% of yeast genes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction (SPT3, SPT8 and SPT20) and promoter selectivity, interaction with transcription activators (GCN5, ADA2, ADA3 and TRA1), and chromatin modification through histone acetylation (GCN5) and deubiquitination (UBP8). SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SALSA, an altered form of SAGA, may be involved in positive transcriptional regulation. SLIK is proposed to have partly overlapping functions with SAGA. It preferentially acetylates methylated histone H3, at least after activation at the GAL1-10 locus.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P49846|TAF5_DROME Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1

 Score =  330 bits (845), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 207/622 (33%), Positives = 329/622 (52%), Gaps = 44/622 (7%)

Query: 49  ELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKG 108
           EL+KF     +S D    Y+  Y +LR++   SLD+YKHEL  VLYP+ +  +  ++A G
Sbjct: 101 ELAKFID--DDSFDAQ-HYEQAYKELRTFVEDSLDIYKHELSMVLYPILVQIYFKILASG 157

Query: 109 HIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYE 168
             ++A+ F   ++ D +  ++  L  L  +  P  L E +   ++   K  I++ + S+ 
Sbjct: 158 LREKAKEFIEKYKCDLDGYYIEGLFNLLLLSKPEELLENDLVVAMEQDKFVIRMSRDSHS 217

Query: 169 LLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSN-QDAANQINQKEV 227
           L  +++   +   +  I+++ ++F    G      +  + V   GS+  +A  Q N+  V
Sbjct: 218 LFKRHIQDRRQEVVADIVSKYLHFDTYEGMAR---NKLQCVATAGSHLGEAKRQDNKMRV 274

Query: 228 HWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAI 287
           ++              GL+      E + +            +         K KK K  
Sbjct: 275 YY--------------GLLK-----EVDFQTLTTPAPAPEEEDDDPDAPDRPKKKKPKKD 315

Query: 288 NATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLR---NRVHLSSAALPSVSF 344
              +K S+ + N    AP +   + LP +    +   L+ LR    R+ LS   LPS  F
Sbjct: 316 PLLSKKSKSDPN----APSIDR-IPLPELKDSDKLLKLKALREASKRLALSKDQLPSAVF 370

Query: 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLGQQAVSSGLQGENDTTPRE 402
           YT +N+H G+ CA IS D +++A GF DSS+++W +  AKL     +  L+  +  +   
Sbjct: 371 YTVLNSHQGVTCAEISDDSTMLACGFGDSSVRIWSLTPAKLRTLKDADSLRELDKESADI 430

Query: 403 DIIGPNGRKRSYTL-YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG 461
           ++   + R    T    GH+GPVY  +F+P  + +LS S D+TIRLWS    + +V Y+G
Sbjct: 431 NVRMLDDRSGEVTRSLMGHTGPVYRCAFAPEMNLLLSCSEDSTIRLWSLLTWSCVVTYRG 490

Query: 462 HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIA 521
           H YPVWDV+F P G+YF S S+D+TAR+W+ D  Q LR+  GHLSDVDCV++H N NY+A
Sbjct: 491 HVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYVA 550

Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581
           TGSSD+TVRLWD  +G+ VR+  GH+  + SLA S  GRY+ASG  D  I++WDL++G  
Sbjct: 551 TGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNGSL 610

Query: 582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK-------VLKTEEKSGTN 634
           VT L+ HTS V T+ +S +G++LA+   D  + LWD    T+        +   +     
Sbjct: 611 VTTLLRHTSTVTTITFSRDGTVLAAAGLDNNLTLWDFHKVTEDYISNHITVSHHQDENDE 670

Query: 635 RLRSLKTLPTKSTPVYSLQVLR 656
            +  ++T P+K++P  SL   R
Sbjct: 671 DVYLMRTFPSKNSPFVSLHFTR 692

TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. May play a role in helping to anchor Taf4 within the TFIID complex. May be involved in transducing signals from various transcriptional regulators to the RNA polymerase II transcription machinery.

Drosophila melanogaster (taxid: 7227)

>sp|O74319|TAF73_SCHPO Transcription initiation factor TFIID subunit taf73 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf73 PE=1 SV=1

 Score =  329 bits (844), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 214/623 (34%), Positives = 328/623 (52%), Gaps = 49/623 (7%)

Query: 8   EFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARY 67
           + V  YL KKG+S  E  L+ EI    SS    P       E   +    SE+      Y
Sbjct: 17  KIVLDYLFKKGYSRTEAMLRLEI----SSVGAIP------EEQQDWHIGASET------Y 60

Query: 68  QDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMM 127
              Y  LR W   +LDLYK +L  VLYP+F+H ++DL+ K   + A  FF +FR +HE++
Sbjct: 61  VQVYILLRDWIDGTLDLYKPKLQKVLYPIFVHSYLDLLQKNDPEMAIYFFESFRIEHEVL 120

Query: 128 HLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQ---STKMLG 184
           H  D++ L  +   S +EE+E A   R +K  I   + +++LL+Q+L + +   S  ++ 
Sbjct: 121 HGYDIRALAQLKIASDVEEIEIAQLYRKNKYRINFTRSTFDLLVQFLFENEVNGSGIIIR 180

Query: 185 IINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKT 243
           ++N+ I+ +++  Q     D + + V  +   ++    I+++E   G  E  L+   +  
Sbjct: 181 LLNQYIDIKITMPQVEGKEDPNVQAVYEMDEAKNEQTIISEQEGIPGHSEQLLDYNKQSI 240

Query: 244 GLISDSEKAEGENKEAEIDENKKRPVEGGKQGAS-IKKLKKDKAINATAKTSRLEANTVS 302
            L       E       + E K + VEG  +  + I    K+     T K + +  +T+ 
Sbjct: 241 QLGLRPLSEEVVTTLKNLLEVKDKDVEGRNEALNKILHPAKNLVELLTEKENLINESTLE 300

Query: 303 TAPRVKPDLALPVMPTEVEQ-----SILEDLRNRVHLSSAAL-PSVSFYTFINTHNGLNC 356
           +      D  LP  PT+++      S+LE  +N + L   A  PSV  YT  NT + +NC
Sbjct: 301 SPS----DPPLP--PTKMKDIDYFVSLLESEQNSLILGKNATDPSVFMYTMHNTLSAVNC 354

Query: 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
           A+ S D S+ A G +DSS+ ++     G Q +   +  +N+   +  +IG          
Sbjct: 355 AAFSDDASMFALGCADSSIHLYSSTNNGPQPL---VGSQNEPLQKSSLIG---------- 401

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
              H+ PV+  S SP  +FILS S D   RLWS    + +V Y GHN P+WDVQF+P G+
Sbjct: 402 ---HTRPVFGVSISPQKEFILSCSEDGFTRLWSKDTKSTIVKYAGHNAPIWDVQFSPFGY 458

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           YFA++SHD+TAR+W ++   PLR+  GH +DVDCV +H N  Y+ATGSSD T R+WDV +
Sbjct: 459 YFATASHDQTARLWDVEHAAPLRVFVGHQNDVDCVSFHPNAAYLATGSSDHTTRMWDVRT 518

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596
           G  VR+F  H S + +L MS DG  +AS DE G I +WDL S       + H+S V++L+
Sbjct: 519 GGTVRVFNAHHSPVSALCMSADGLSLASADESGIIKVWDLRSSNQHVSFVKHSSIVYSLS 578

Query: 597 YSCEGSLLASGSADCTVKLWDVT 619
           +S +  +L SG AD  V  WD+T
Sbjct: 579 FSYDNKILVSGGADTDVNFWDLT 601

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8SQS4|TAF5_ENCCU Transcription initiation factor TFIID subunit 5 OS=Encephalitozoon cuniculi (strain GB-M1) GN=TAF5 PE=1 SV=1

 Score =  283 bits (723), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 183/585 (31%), Positives = 307/585 (52%), Gaps = 68/585 (11%)

Query: 71  YSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLR 130
           Y  L++W   SLDL+K++LL +LYP+FIH + DL+ +    EA+ FF  +R DH      
Sbjct: 23  YVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDH-YNKSE 81

Query: 131 DLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERI 190
           ++++ E + +  H+ E  FA++ ++SK ++ + +Y+++LL+ +L +   T +L I+N+ +
Sbjct: 82  EIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHL 141

Query: 191 NFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSE 250
           + +V  G  S         +++ +  D    +  +E    +L D               E
Sbjct: 142 DIKVYVGPKSEERPQGIETSVVDAEIDLTTFLVSRECEDAILGD---------------E 186

Query: 251 KAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPD 310
           +   ++ E  + + +K+           +++K   ++                    KP+
Sbjct: 187 QYRYDHLETYVLQLRKQ-----------REMKPKDSV-------------------YKPN 216

Query: 311 LALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
            +   +  E+E+  L+DL  RV ++   LPS+  YT  NT+ GL  A IS D  L+A GF
Sbjct: 217 ASQ--IHAEIEK--LKDLCKRVAVNKNNLPSICCYTIHNTYEGLTAAEISNDLKLMACGF 272

Query: 371 SDSSLKVWDMAK--LGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428
            DS ++V+ +    L +   SS L   +  T  E+     G   SY L  GHSGPVY   
Sbjct: 273 KDSYVEVYSLTNESLKKLKSSSELAKSDIKTLNEEKFEEVGS--SYKLV-GHSGPVYGLK 329

Query: 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488
           F     F++SSS D T+ LWS  L   L  YK H +PVW V   P  ++FAS + DR A 
Sbjct: 330 FFSSNKFLVSSSQDCTVCLWSLDLLCLLAVYKAHAFPVWCVDVAPNDYFFASGAGDRQAI 389

Query: 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS 548
           +WS+   +P R++   LSDV  V++H N +Y+ TGSSD  VR+ D+S+   VRIF GH  
Sbjct: 390 VWSVMTSKPERLIISSLSDVTAVKFHPNSSYLFTGSSDHRVRMHDISTASVVRIFCGHTD 449

Query: 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS 608
            +  + +S  G+++ASG +D T+++WD+ S + +   +GH + V+++++   GS+LAS  
Sbjct: 450 TVTCMDVSHCGKFLASGSKDRTVLLWDIQSSKLLGKYVGHENTVFSVSFCFYGSVLASCG 509

Query: 609 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ 653
           AD +V+LWD        +T+ K G      L T  TK+TP+  ++
Sbjct: 510 ADNSVRLWD--------RTDHKGGC-----LGTYYTKNTPLLCVK 541

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

>sp|O75529|TAF5L_HUMAN TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1

 Score =  278 bits (710), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 149/342 (43%), Positives = 197/342 (57%), Gaps = 11/342 (3%)

Query: 282 KKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPS 341
           + D  + A+  +SR E N +       PD+  P++  E    +L++   RV     +L +
Sbjct: 204 RTDYQLYASGSSSRSENNGLE-----PPDMPSPILQNEAALEVLQESIKRVKDGPPSLTT 258

Query: 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLG---QQAVSSGLQGEN 396
           + FY F NT   LN A IS D  L+A GF +S +K+W +   KL     Q   S +    
Sbjct: 259 ICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLAC 318

Query: 397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL 456
           D    ED    N       L +GH GPVYS  F      +LS S D +IR W      N 
Sbjct: 319 DILEEEDDEDDNAGTEMKIL-RGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNT 377

Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516
           V Y+GH YPVWD+  +P   YFAS SHDRTAR+WS DR  PLRI AGHL+DVDCV++H N
Sbjct: 378 VLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPN 437

Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
            NY+ATGS+DKTVRLW    G  VR+F GHR  +LSLA SP+G+Y+AS  ED  + +WDL
Sbjct: 438 SNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDL 497

Query: 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           ASG     L GHT  + +L +S +  L+AS S D +V++WD+
Sbjct: 498 ASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDI 539

Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex.

Homo sapiens (taxid: 9606)

>sp|Q91WQ5|TAF5L_MOUSE TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1

 Score =  278 bits (710), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 149/356 (41%), Positives = 207/356 (58%), Gaps = 11/356 (3%)

Query: 282 KKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPS 341
           + D  + A+  +SR E +++       P++  P++  E    +L++   RV     +L +
Sbjct: 204 RTDYQLYASGGSSRTENSSLE-----PPEVPSPILQNEAALEVLQESIKRVKDGPPSLTT 258

Query: 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLGQQ---AVSSGLQGEN 396
           + FY F NT   LN A IS D  L+A GF +S +K+W +   KL  +     +S ++   
Sbjct: 259 ICFYAFYNTEQLLNTAEISSDSKLLAAGFDNSCIKLWSLRSKKLKSEPHHVDTSRIRLAC 318

Query: 397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL 456
           DT   E+    N       L +GH GPVYS  F      +LS S D +IR W      N 
Sbjct: 319 DTLEEEENEEDNTGTEMKIL-RGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNT 377

Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516
           V Y+GH YPVWDV  +P   YFAS SHDRTAR+WS DR  PLRI AGHL+DVDCV++H N
Sbjct: 378 VLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPN 437

Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
            NY+ATGS+DKTVRLW    G  VR+F GHR  +LSL+ SP+G+Y+AS  ED  + +WDL
Sbjct: 438 SNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDL 497

Query: 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632
           ASG     L GHT  + +LA+S +  L+AS S D +V++WD+ ++      +  SG
Sbjct: 498 ASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPADGSSG 553

Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex.

Mus musculus (taxid: 10090)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  186 bits (471), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 158/294 (53%), Gaps = 20/294 (6%)

Query: 344  FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG------------ 391
             YT     N +N  + S DG+ +A G  D ++++WD++      +  G            
Sbjct: 1151 LYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNP 1210

Query: 392  -----LQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIR 446
                   G +D T R   +      +    +QGH+  V S  F+P G  + S S+D T+R
Sbjct: 1211 DGSTLASGSSDQTVR---LWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVR 1267

Query: 447  LWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS 506
            LW    +  L  ++GH   V  V FNP G   AS S D+T R+W +   + L    GH S
Sbjct: 1268 LWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTS 1327

Query: 507  DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566
             V  V +  +   +A+GS D+TVRLW +SSGEC+  F+GH + + S+  SPDG  +ASG 
Sbjct: 1328 WVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGS 1387

Query: 567  EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
             D T+ +W ++SG+C+  L GH + V ++ +S +G+LLASGS D TV+LW++++
Sbjct: 1388 GDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISS 1441

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	656
359475836	676	PREDICTED: transcription initiation fact	1.0	0.970	0.812	0.0
255548758	670	protein with unknown function [Ricinus c	0.995	0.974	0.810	0.0
359475838	667	PREDICTED: transcription initiation fact	0.989	0.973	0.806	0.0
449455529	674	PREDICTED: transcription initiation fact	0.996	0.970	0.796	0.0
224092584	675	predicted protein [Populus trichocarpa]	1.0	0.971	0.801	0.0
224143295	675	predicted protein [Populus trichocarpa]	1.0	0.971	0.800	0.0
356514986	663	PREDICTED: transcription initiation fact	0.986	0.975	0.775	0.0
356507277	669	PREDICTED: transcription initiation fact	0.992	0.973	0.775	0.0
357466033	715	Transcription initiation factor TFIID su	0.995	0.913	0.713	0.0
79520288	669	transcription initiation factor TFIID su	0.993	0.974	0.768	0.0

>gi|359475836|ref|XP_003631761.1| PREDICTED: transcription initiation factor TFIID subunit 5-like isoform 2 [Vitis vinifera] gi|296082065|emb|CBI21070.3| unnamed protein product [Vitis vinifera]

 Score = 1117 bits (2888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/662 (81%), Positives = 589/662 (88%), Gaps = 6/662 (0%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEI---QRNKSSNNTNPIDILNDPELSKFFRTF 57
           M+E ++ + V  YLKKKGF + E A Q E    Q  ++ N+++ I    DP+++K   +F
Sbjct: 1   MEEEEIEKAVIAYLKKKGFKQTELAFQEEHHQHQNQQTKNSSSSISSSTDPDIAKHILSF 60

Query: 58  SESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFF 117
           SESE+ PARY + YSKLRSWTYSSLDLYKHELL VLYPVFIHCFMDLVAKGHIQEAR FF
Sbjct: 61  SESENIPARYHEGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFF 120

Query: 118 NNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKT 177
           N+FREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLR SKV+IKICQYSYELLLQYLHKT
Sbjct: 121 NSFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVSIKICQYSYELLLQYLHKT 180

Query: 178 QSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLE 237
           QS  MLG+INE INFQVSPGQP+SISDDAE+VTLIGS+QD ANQINQKE+HWGLLE SLE
Sbjct: 181 QSITMLGVINEHINFQVSPGQPASISDDAEVVTLIGSSQDDANQINQKEIHWGLLEGSLE 240

Query: 238 NRLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRL 296
            RLEK G L+SDSEKAEGE KE + +ENKKR  EGGKQG+SIKKLKKDK + A  KT+R 
Sbjct: 241 ERLEKAGGLLSDSEKAEGEVKETDTEENKKRSAEGGKQGSSIKKLKKDKVVGAAGKTARP 300

Query: 297 EANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNC 356
           EAN VS APRVKP+LALPVMPTEVEQSILEDLRNRV LSS ALPSVSFYTFINTHN LNC
Sbjct: 301 EANAVSMAPRVKPELALPVMPTEVEQSILEDLRNRVQLSSMALPSVSFYTFINTHNSLNC 360

Query: 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
           +SIS DGSLVAGGFSDSSLKVWDM+KLGQQA +S +QG+ND  P E I+G +G KRSYTL
Sbjct: 361 SSISHDGSLVAGGFSDSSLKVWDMSKLGQQAATSIMQGDNDLAPTEQILGTSGGKRSYTL 420

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           +QGHSGPVYSA+FSPLGDFILSSSAD+TIRLWSTKLNANLVCYKGHNYPVWDVQF+P GH
Sbjct: 421 FQGHSGPVYSATFSPLGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGH 480

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WHINCNYIATGSSDKTVRLWDV S
Sbjct: 481 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHINCNYIATGSSDKTVRLWDVQS 540

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596
           GECVRIFIGHRSM+LSLAMSPDG+YMASGDEDGTIMMWDL+SGRCV PLMGH SCVW+LA
Sbjct: 541 GECVRIFIGHRSMVLSLAMSPDGQYMASGDEDGTIMMWDLSSGRCVMPLMGHMSCVWSLA 600

Query: 597 YSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSG-TNRLRSLKTLPTKSTPVYSLQV 654
           +SCEGSLLASGSAD TVKLWDVTTSTKV ++EE KSG T+RLRSLKTLPTKSTPVYSL+ 
Sbjct: 601 FSCEGSLLASGSADSTVKLWDVTTSTKVPRSEENKSGNTSRLRSLKTLPTKSTPVYSLRF 660

Query: 655 LR 656
            R
Sbjct: 661 SR 662

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548758|ref|XP_002515435.1| protein with unknown function [Ricinus communis] gi|223545379|gb|EEF46884.1| protein with unknown function [Ricinus communis]

 Score = 1106 bits (2860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/659 (81%), Positives = 584/659 (88%), Gaps = 6/659 (0%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           MDE QVV+FV TYLKKKGF +AE A   E+QRN  +N+   +D+ +DP+LS    + S+S
Sbjct: 1   MDEEQVVKFVETYLKKKGFKQAELAFHDEVQRNSRANS---VDVHSDPDLSTLLLSLSQS 57

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           ED PARY DEY KLRSWT+SSLDLYK ELL VLYPVF+HC+MDLVAK HIQEARTFFNNF
Sbjct: 58  EDTPARYHDEYGKLRSWTHSSLDLYKPELLRVLYPVFVHCYMDLVAKAHIQEARTFFNNF 117

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           REDHE MH RDLQKLEGVLSPSHLEEMEFAH+LR SKVNIKICQYS ELL+QYL  T+ST
Sbjct: 118 REDHETMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSNELLMQYLRNTKST 177

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            MLGI+NE INFQVSPGQPSSISDD E+VTLIGS+QDAANQIN+KE+HWGLLEDS+E  L
Sbjct: 178 MMLGIVNEHINFQVSPGQPSSISDDDEVVTLIGSSQDAANQINKKEIHWGLLEDSMEEHL 237

Query: 241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
           EK G L SDSEK EGE KE ++DE+KKR +EGGKQG S+KK+KKDKA +ATAK  R E N
Sbjct: 238 EKAGGLHSDSEKTEGEAKEGDMDESKKRSIEGGKQGTSVKKMKKDKATSATAKVVRPETN 297

Query: 300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
           +  TAPRVKP+L LPV+PTEVEQSILEDLRNRV LSSAALPSVSFYTFINTHNGLNC+SI
Sbjct: 298 SAPTAPRVKPELPLPVIPTEVEQSILEDLRNRVQLSSAALPSVSFYTFINTHNGLNCSSI 357

Query: 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           S DGSLVAGGFSDSSLKVWDMAKLGQQ  +S LQG NDT   E  +G NG KRSYTL+QG
Sbjct: 358 SHDGSLVAGGFSDSSLKVWDMAKLGQQGSNSVLQGANDTAASEHFLGANGAKRSYTLFQG 417

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSGPVYSA+FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF+P GHYFA
Sbjct: 418 HSGPVYSATFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFA 477

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           S+SHDRTARIWSMDR+QPLRI+AGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGEC
Sbjct: 478 SASHDRTARIWSMDRLQPLRILAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGEC 537

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
           VRIFIGHRSMILSLAMSPDGR+MAS DEDGTIMMWDL+SGRCV+PLMGH SCVWTLA+SC
Sbjct: 538 VRIFIGHRSMILSLAMSPDGRFMASADEDGTIMMWDLSSGRCVSPLMGHNSCVWTLAFSC 597

Query: 600 EGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSGT-NRLRSLKTLPTKSTPVYSLQVLR 656
           EGSLLASGSADCTVKLWDVT+STKV K EE KSG+ NRLRSLKTLPTKSTPVYSL+  R
Sbjct: 598 EGSLLASGSADCTVKLWDVTSSTKVTKAEESKSGSANRLRSLKTLPTKSTPVYSLRFSR 656

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475838|ref|XP_002285276.2| PREDICTED: transcription initiation factor TFIID subunit 5-like isoform 1 [Vitis vinifera]

 Score = 1106 bits (2860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/660 (80%), Positives = 582/660 (88%), Gaps = 11/660 (1%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEI---QRNKSSNNTNPIDILNDPELSKFFRTF 57
           M+E ++ + V  YLKKKGF + E A Q E    Q  ++ N+++ I    DP+++K     
Sbjct: 1   MEEEEIEKAVIAYLKKKGFKQTELAFQEEHHQHQNQQTKNSSSSISSSTDPDIAK----- 55

Query: 58  SESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFF 117
             SE+ PARY + YSKLRSWTYSSLDLYKHELL VLYPVFIHCFMDLVAKGHIQEAR FF
Sbjct: 56  --SENIPARYHEGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFF 113

Query: 118 NNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKT 177
           N+FREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLR SKV+IKICQYSYELLLQYLHKT
Sbjct: 114 NSFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVSIKICQYSYELLLQYLHKT 173

Query: 178 QSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLE 237
           QS  MLG+INE INFQVSPGQP+SISDDAE+VTLIGS+QD ANQINQKE+HWGLLE SLE
Sbjct: 174 QSITMLGVINEHINFQVSPGQPASISDDAEVVTLIGSSQDDANQINQKEIHWGLLEGSLE 233

Query: 238 NRLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRL 296
            RLEK G L+SDSEKAEGE KE + +ENKKR  EGGKQG+SIKKLKKDK + A  KT+R 
Sbjct: 234 ERLEKAGGLLSDSEKAEGEVKETDTEENKKRSAEGGKQGSSIKKLKKDKVVGAAGKTARP 293

Query: 297 EANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNC 356
           EAN VS APRVKP+LALPVMPTEVEQSILEDLRNRV LSS ALPSVSFYTFINTHN LNC
Sbjct: 294 EANAVSMAPRVKPELALPVMPTEVEQSILEDLRNRVQLSSMALPSVSFYTFINTHNSLNC 353

Query: 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
           +SIS DGSLVAGGFSDSSLKVWDM+KLGQQA +S +QG+ND  P E I+G +G KRSYTL
Sbjct: 354 SSISHDGSLVAGGFSDSSLKVWDMSKLGQQAATSIMQGDNDLAPTEQILGTSGGKRSYTL 413

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           +QGHSGPVYSA+FSPLGDFILSSSAD+TIRLWSTKLNANLVCYKGHNYPVWDVQF+P GH
Sbjct: 414 FQGHSGPVYSATFSPLGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGH 473

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WHINCNYIATGSSDKTVRLWDV S
Sbjct: 474 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHINCNYIATGSSDKTVRLWDVQS 533

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596
           GECVRIFIGHRSM+LSLAMSPDG+YMASGDEDGTIMMWDL+SGRCV PLMGH SCVW+LA
Sbjct: 534 GECVRIFIGHRSMVLSLAMSPDGQYMASGDEDGTIMMWDLSSGRCVMPLMGHMSCVWSLA 593

Query: 597 YSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
           +SCEGSLLASGSAD TVKLWDVTTSTKV ++EE   T+RLRSLKTLPTKSTPVYSL+  R
Sbjct: 594 FSCEGSLLASGSADSTVKLWDVTTSTKVPRSEENGNTSRLRSLKTLPTKSTPVYSLRFSR 653

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455529|ref|XP_004145505.1| PREDICTED: transcription initiation factor TFIID subunit 5-like [Cucumis sativus] gi|449485181|ref|XP_004157092.1| PREDICTED: transcription initiation factor TFIID subunit 5-like [Cucumis sativus]

 Score = 1099 bits (2843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/659 (79%), Positives = 585/659 (88%), Gaps = 5/659 (0%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           MDE  +  FV+ YLKKKGF E E A Q E+++NK+ N+++P   + D +++K   +FSE+
Sbjct: 1   MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKT-NSSSPSSFI-DVDVAKHLLSFSEA 58

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           E+ PA+Y + YSKLRSW Y+SLDLYKHELL VLYPVFIHCFMDLVAKGHIQEARTFFN F
Sbjct: 59  ENIPAKYLEGYSKLRSWAYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRF 118

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           REDHEMMHLRD+QKLEGVLSPSHLEEMEFAHSLR  KVNIKICQYSYE+LLQYLHKTQ+T
Sbjct: 119 REDHEMMHLRDIQKLEGVLSPSHLEEMEFAHSLRQGKVNIKICQYSYEMLLQYLHKTQTT 178

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            +LGIINERINFQV PGQPSSISDDAE+VTL GS QD ANQIN+KEVHWGLLEDSLE RL
Sbjct: 179 VILGIINERINFQVFPGQPSSISDDAELVTLTGSTQDTANQINKKEVHWGLLEDSLEERL 238

Query: 241 EKT-GLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
           EK  GL+SDSEKAEGE K+ ++DENKKR  EGGKQG SIKK+KKDK  +AT KT R EAN
Sbjct: 239 EKAAGLLSDSEKAEGETKDGDVDENKKRTAEGGKQGGSIKKVKKDKTASATGKTLRAEAN 298

Query: 300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
           + S APRVKP+LALP++ TEVE+SILEDLRNRV LSS ALPSVSFYTFINTHNGLNC+SI
Sbjct: 299 SASMAPRVKPELALPIISTEVEESILEDLRNRVQLSSVALPSVSFYTFINTHNGLNCSSI 358

Query: 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           S DG+LVAGGFSDSSLKVWDMAKLGQQA ++ LQ END +  + + G    KR YTL+QG
Sbjct: 359 SYDGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTSDPVTGHTSGKRPYTLFQG 418

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSGPV+SA+FSP+GDF+LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF+P GHYFA
Sbjct: 419 HSGPVHSATFSPIGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFA 478

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           S SHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGEC
Sbjct: 479 SCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGEC 538

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
           VRIFIGHRSMILSLAMSPDGR+MASGDEDGTIMMWDL++GRCVTPL+GHTSCVWTLA+SC
Sbjct: 539 VRIFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWTLAFSC 598

Query: 600 EGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSGT-NRLRSLKTLPTKSTPVYSLQVLR 656
           EGSLLASGSADCTVKLWDVT+STK  +T+E K+GT NRLRSLKTLPTKSTPVYSL+  R
Sbjct: 599 EGSLLASGSADCTVKLWDVTSSTKPPRTDENKTGTPNRLRSLKTLPTKSTPVYSLRFSR 657

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092584|ref|XP_002309672.1| predicted protein [Populus trichocarpa] gi|222855648|gb|EEE93195.1| predicted protein [Populus trichocarpa]

 Score = 1075 bits (2781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/661 (80%), Positives = 588/661 (88%), Gaps = 5/661 (0%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKS--SNNTNPIDILNDPELSKFFRTFS 58
           MDE  VV+FV TYLKKKGF +AE A Q EIQ+ +   +N+ N I+I +DP+LS    + S
Sbjct: 1   MDEEAVVKFVETYLKKKGFKQAELAFQEEIQQQQQKQNNSKNAINIHSDPDLSTLLHSLS 60

Query: 59  ESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFN 118
           + ED PARYQ+EYSKLR+W YSSLDLYKHELL VLYPVF+HC+MD+VAKGHIQ+AR FFN
Sbjct: 61  QPEDSPARYQEEYSKLRTWAYSSLDLYKHELLRVLYPVFVHCYMDIVAKGHIQDARNFFN 120

Query: 119 NFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQ 178
           +FREDHEMMH RDLQKLEGVLSPSHLEEMEFAH+LR SKVNIKICQYS EL++QYL K++
Sbjct: 121 SFREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSDELMMQYLRKSK 180

Query: 179 STKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLEN 238
           ST +LGI+NE INFQVSPGQP SISDD + VTLIGS+QDAANQIN+KE+HWGLLEDSLE 
Sbjct: 181 STIILGIVNEHINFQVSPGQPISISDDPDAVTLIGSSQDAANQINKKEIHWGLLEDSLEE 240

Query: 239 RLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLE 297
           RLEKTG  +SDSEK EGE KE ++DENKKR ++GGKQGASIKK KKDKA +ATAK  RLE
Sbjct: 241 RLEKTGGFLSDSEKTEGETKEGDMDENKKRSMDGGKQGASIKKSKKDKAASATAKAVRLE 300

Query: 298 ANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCA 357
           ANTV  APRVKP+L LPVMP EVEQSILEDLRNRV LSS  LPSVSFYTFINTHNGLNC+
Sbjct: 301 ANTVPAAPRVKPELPLPVMPAEVEQSILEDLRNRVQLSSTTLPSVSFYTFINTHNGLNCS 360

Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
           SIS DGSLVAGGFSDSSLKVWDMAKLGQQA +S LQGEND  P E ++GPN  KRSYTL+
Sbjct: 361 SISHDGSLVAGGFSDSSLKVWDMAKLGQQAGNSILQGENDAAPSEHVLGPNSGKRSYTLF 420

Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           QGHSGPV+SA+FSPLGDFILSSSADTT+RLWST+LNANLVCYKGHNYPVWDVQF+P GHY
Sbjct: 421 QGHSGPVHSATFSPLGDFILSSSADTTVRLWSTELNANLVCYKGHNYPVWDVQFSPVGHY 480

Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
           FAS+SHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SG
Sbjct: 481 FASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSG 540

Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
           ECVRIFIGHRSMILSLAMSPDGRYMASGDEDG+IMMWDL+SGRC++P+MGH SCVW+LA+
Sbjct: 541 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGSIMMWDLSSGRCISPMMGHHSCVWSLAF 600

Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSG-TNRLRSLKTLPTKSTPVYSLQVL 655
           SCE SLLASGSADCTVKLWDVTTSTK  KTEE KSG T+RLR LKTLPTKSTPV +L+  
Sbjct: 601 SCESSLLASGSADCTVKLWDVTTSTKPAKTEESKSGNTHRLRFLKTLPTKSTPVSTLRFS 660

Query: 656 R 656
           R
Sbjct: 661 R 661

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143295|ref|XP_002324907.1| predicted protein [Populus trichocarpa] gi|222866341|gb|EEF03472.1| predicted protein [Populus trichocarpa]

 Score = 1062 bits (2746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/661 (80%), Positives = 580/661 (87%), Gaps = 5/661 (0%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTN--PIDILNDPELSKFFRTFS 58
           MDE  VV+FV TYLKKKGF +AE A   EIQ+     N +   I I +DP+LS    + S
Sbjct: 1   MDEEAVVKFVETYLKKKGFKQAELAFHEEIQQQHQQQNNSNNAISIHSDPDLSSLLHSLS 60

Query: 59  ESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFN 118
           + ED PARYQDEYSKLRSW YSSLDLYKHELL VLYPVF+HC+MD+VAKGHIQEAR FFN
Sbjct: 61  QPEDSPARYQDEYSKLRSWAYSSLDLYKHELLRVLYPVFVHCYMDIVAKGHIQEARKFFN 120

Query: 119 NFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQ 178
           +FREDHEMMH RDLQKLEGVLSPSHLEEMEFAH+LR SKVNIKICQYS ELL+QYL K++
Sbjct: 121 SFREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSNELLMQYLRKSK 180

Query: 179 STKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLEN 238
            T +LGI+NE INFQVSPGQP SISDD + VTLIGS+QDAANQIN+KE+HWGLLEDSLE 
Sbjct: 181 WTIILGIVNEHINFQVSPGQPISISDDPDAVTLIGSSQDAANQINKKEIHWGLLEDSLEE 240

Query: 239 RLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLE 297
           RLEKTG  +SD+EK EGE KE ++DENKKR ++GGKQGASIKK KKDKA +AT K +R E
Sbjct: 241 RLEKTGGFLSDTEKTEGETKEGDMDENKKRSIDGGKQGASIKKSKKDKAASATTKIARPE 300

Query: 298 ANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCA 357
           ANTVS APRVKP+L LPVMPTEVEQSILEDLRNRV LSS  LPSVSFYTFINTHNGLNC+
Sbjct: 301 ANTVSAAPRVKPELPLPVMPTEVEQSILEDLRNRVQLSSVTLPSVSFYTFINTHNGLNCS 360

Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
           SIS DGSL+AGGFSDSSLKVWDMAKLG QA +S LQGENDT P E    PN  KRSYTL+
Sbjct: 361 SISHDGSLIAGGFSDSSLKVWDMAKLGHQAGNSILQGENDTAPSEQGQSPNSGKRSYTLF 420

Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           QGHSGPV+SA+FSPLGDFILSSSADTT+RLWSTKLNANLVCYKGHNYPVWDVQF+P G Y
Sbjct: 421 QGHSGPVHSATFSPLGDFILSSSADTTVRLWSTKLNANLVCYKGHNYPVWDVQFSPVGQY 480

Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
           FAS+SHDRTARIWSMDRIQPLRIMAGHLSDVDC++WH NCNYIATGSSDKTVRLWDV SG
Sbjct: 481 FASASHDRTARIWSMDRIQPLRIMAGHLSDVDCLQWHANCNYIATGSSDKTVRLWDVQSG 540

Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
           ECVRIFIGHRSMILSLAMSPDGRYMAS DEDGTIMMWDL+SGRC++PL+GH SCVW+LA+
Sbjct: 541 ECVRIFIGHRSMILSLAMSPDGRYMASADEDGTIMMWDLSSGRCISPLIGHNSCVWSLAF 600

Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSG-TNRLRSLKTLPTKSTPVYSLQVL 655
           SCEGSLLASGSADCTVKLWDVTTSTK  +TEE KSG TNRLR LKTLPTKSTPVY+L+  
Sbjct: 601 SCEGSLLASGSADCTVKLWDVTTSTKAPRTEESKSGNTNRLRLLKTLPTKSTPVYTLRFS 660

Query: 656 R 656
           R
Sbjct: 661 R 661

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514986|ref|XP_003526182.1| PREDICTED: transcription initiation factor TFIID subunit 5-like [Glycine max]

 Score = 1057 bits (2733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/658 (77%), Positives = 572/658 (86%), Gaps = 11/658 (1%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           M++ ++V +V  +LKKKGF++ E   Q E Q NKS N +N +    +P+++     FS+ 
Sbjct: 1   MEDEKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKS-NTSNSV---LEPDIANHLLAFSQL 56

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           E GPAR+ D YS+LR+WTYSSLDLYKHELL VLYPVFIHCFMDLVAKGH+QEAR FFN F
Sbjct: 57  ETGPARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTF 116

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           REDHEMMHLRDLQKLEGVLSP+HL+EMEFAHSLR SK NIKIC+YSYELLLQ+LH TQST
Sbjct: 117 REDHEMMHLRDLQKLEGVLSPNHLKEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQST 176

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            +LGIINE INFQV+PGQPS ISDD E VTL GS+Q+AANQINQKE+HWGLLEDSLE RL
Sbjct: 177 TILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANQINQKEIHWGLLEDSLEERL 236

Query: 241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
           EK G L+SDSEK EGE KE E DE KKR +EGGKQGAS+KK+KKDK  +AT K+++ EAN
Sbjct: 237 EKAGALLSDSEKGEGEAKEGENDETKKRSIEGGKQGASVKKVKKDKGGSATGKSAKPEAN 296

Query: 300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
           T+ +APRVKP+L LPV+P E EQS+LEDLRNRV LSS ALPSVSFYTFINTHNGL+C+SI
Sbjct: 297 TIPSAPRVKPELPLPVIPAEAEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSI 356

Query: 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           S DGSL+AGGFSDSSLKVWDMAKLGQQ  SS  QGEN     E I G  G KR YTL+QG
Sbjct: 357 SHDGSLIAGGFSDSSLKVWDMAKLGQQQTSSLSQGEN-----EQIFGQGGGKRQYTLFQG 411

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSGPVY+ASFSP+GDFILSSSAD+TIRLWSTKLNANLVCYKGHNYPVWDVQF+P GHYFA
Sbjct: 412 HSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFA 471

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGEC
Sbjct: 472 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGEC 531

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
           VR+F+GHR MILSLAMSPDGRYMASGDEDGTIMMWDL+SGRC+TPL+GHTSCVW+LA+S 
Sbjct: 532 VRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSS 591

Query: 600 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT-NRLRSLKTLPTKSTPVYSLQVLR 656
           EGS++ASGSADCTVKLWDV TSTKV + EEK G+ NRLRSLKTLPTKSTPVYSL+  R
Sbjct: 592 EGSVIASGSADCTVKLWDVNTSTKVSRAEEKGGSANRLRSLKTLPTKSTPVYSLRFSR 649

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507277|ref|XP_003522395.1| PREDICTED: transcription initiation factor TFIID subunit 5-like [Glycine max]

 Score = 1050 bits (2716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/660 (77%), Positives = 573/660 (86%), Gaps = 9/660 (1%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           M++ ++V +V  +LKKKGF++ E   Q E Q NKS    N  + L +P+++     FS+ 
Sbjct: 1   MEDDKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKS----NTSNSLLEPDIANHLLAFSQL 56

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           E GPAR+ D YS+LR+WTYSSLDLYKHELL VLYPVFIHCFMDLVAKGH+QEAR FFN F
Sbjct: 57  ETGPARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTF 116

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           REDHEMMHLRDLQKLEGVLSP+HLEEMEFAHSLR SK NIKIC+YSYELLLQ+LH TQST
Sbjct: 117 REDHEMMHLRDLQKLEGVLSPNHLEEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQST 176

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            +LGIINE INFQV+PGQPS ISDD E VTL GS+Q+AAN INQKE+HWGLLEDSLE RL
Sbjct: 177 TILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANLINQKEIHWGLLEDSLEERL 236

Query: 241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQG-ASIKKLKKDKAINATAKTSRLEA 298
           EK G L+ DSEK EGE KE E DE KKR +EGGKQG AS+KK+KKDK  +AT K+++ EA
Sbjct: 237 EKAGALLLDSEKGEGEAKEGENDETKKRSIEGGKQGGASVKKVKKDKGGSATGKSAKPEA 296

Query: 299 NTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCAS 358
           +TV  APRVKP+L LPV+PTEVEQS+LEDLRNRV LSS ALPSVSFYTFINTHNGL+C+S
Sbjct: 297 STVPAAPRVKPELPLPVIPTEVEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSS 356

Query: 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418
           IS DGSL+AGGFSDSSLKVWDMAKLGQQA SS  QGENDT+  E I G  G KR YTL+Q
Sbjct: 357 ISHDGSLIAGGFSDSSLKVWDMAKLGQQA-SSLSQGENDTSQNEQIFGQGGGKRQYTLFQ 415

Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
           GHSGPVY+ASFSP+GDFILSSSAD+TIRLWSTKLNANLVCYKGHNYPVWDVQF+P GHYF
Sbjct: 416 GHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYF 475

Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
           ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGE
Sbjct: 476 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGE 535

Query: 539 CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYS 598
           CVR+F+GHR MILSLAMSPDGRYMASGDEDGTIMMWDL+SGRC+TPL+GHTSCVW+LA+S
Sbjct: 536 CVRVFVGHRVMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFS 595

Query: 599 CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT--NRLRSLKTLPTKSTPVYSLQVLR 656
            EGS++ASGSADCTVKLWDV  STKV + EEKSG+  +RLRSLKTL TKSTPVYSL+  R
Sbjct: 596 SEGSIIASGSADCTVKLWDVNASTKVSRAEEKSGSANSRLRSLKTLSTKSTPVYSLRFSR 655

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466033|ref|XP_003603301.1| Transcription initiation factor TFIID subunit [Medicago truncatula] gi|355492349|gb|AES73552.1| Transcription initiation factor TFIID subunit [Medicago truncatula]

 Score = 1037 bits (2681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/704 (71%), Positives = 571/704 (81%), Gaps = 51/704 (7%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           MDE +++ +V  YLKKKGF + E   Q E Q+NK+S+++N I    +P+++     FS+ 
Sbjct: 1   MDEDEILGYVTAYLKKKGFKQTEKVFQEEFQQNKTSSSSNSI---LEPDIANHLHAFSQL 57

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           E+GPARY + YS+LR+WTYSSLDLYKHELL VLYPVFIHCFMDLVAKGHIQEAR FF  F
Sbjct: 58  ENGPARYHNGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFTTF 117

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSY------------- 167
           REDHE+MHLRD+QKLEGVLSP+HL+EMEFAHSLR SK NIKIC+++              
Sbjct: 118 REDHELMHLRDIQKLEGVLSPTHLKEMEFAHSLRQSKFNIKICEHAVVVKSLFAKSYVLG 177

Query: 168 ----ELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQIN 223
               +LLLQ+LH TQST +LGIINE INFQV+ GQPS ISDD E VTL GS+Q+AANQ N
Sbjct: 178 STLAKLLLQHLHSTQSTTILGIINEHINFQVTSGQPSLISDDPEAVTLTGSSQEAANQTN 237

Query: 224 QKEVHWGLLEDSLENRLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLK 282
           QKE+HWGLLEDSLE RLEK G L+SDSEK +GE KE E DENKKR +E GKQGAS KK+K
Sbjct: 238 QKEIHWGLLEDSLEERLEKPGALLSDSEKGDGEAKEGENDENKKRSIEVGKQGASSKKMK 297

Query: 283 KDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSV 342
           KD+   AT K+++ E  TVS APRVK +L LP++PTEVE SILEDLRNRV LSS ALPSV
Sbjct: 298 KDRGGTATGKSAKPEVTTVSAAPRVKAELPLPIIPTEVEHSILEDLRNRVQLSSVALPSV 357

Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
           SFYTFINTHNGL+C+SIS DGSLVAGGFSDSSLKVWDMAKLGQQ  SS  QGENDT+  E
Sbjct: 358 SFYTFINTHNGLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQPSSSLSQGENDTSQNE 417

Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
            ++G +G KR YTL+QGHSGPVY+ASF P+GDFILSSSAD+TIRLWSTKLNANLVCYKGH
Sbjct: 418 QMLGKSGGKRQYTLFQGHSGPVYAASFCPVGDFILSSSADSTIRLWSTKLNANLVCYKGH 477

Query: 463 NYPVWDVQ-----------------------------FNPQGHYFASSSHDRTARIWSMD 493
           NYPVWDVQ                             F+P GHYFASSSHDRTAR+WSMD
Sbjct: 478 NYPVWDVQPRESTSVNGKILYAHIFWKVVFISFSWMQFSPMGHYFASSSHDRTARVWSMD 537

Query: 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL 553
           RIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGECVR+F+GHR MILSL
Sbjct: 538 RIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSL 597

Query: 554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV 613
           +MSPDGRYMASGDEDGTIMMWDL+SGRCVTPL+GHTSCVW+LA+S EGS+LASGSADCTV
Sbjct: 598 SMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLVGHTSCVWSLAFSSEGSILASGSADCTV 657

Query: 614 KLWDVTTSTKVLKTEEKSG-TNRLRSLKTLPTKSTPVYSLQVLR 656
           KLWDV TSTKV +TEEK+G  NRLRSLKTLPTKSTPV +L+  R
Sbjct: 658 KLWDVNTSTKVSRTEEKNGNANRLRSLKTLPTKSTPVNTLRFSR 701

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79520288|ref|NP_197897.3| transcription initiation factor TFIID subunit D4 [Arabidopsis thaliana] gi|39545918|gb|AAR28022.1| TAF5 [Arabidopsis thaliana] gi|332006023|gb|AED93406.1| transcription initiation factor TFIID subunit D4 [Arabidopsis thaliana]

 Score = 1034 bits (2674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/658 (76%), Positives = 569/658 (86%), Gaps = 6/658 (0%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           MD  Q+ EFV  YLKKKGFS A   L++   +N + ++   +D  NDPEL+K  R+FS+ 
Sbjct: 1   MDPEQINEFVVGYLKKKGFSSAAKDLESYHHQNNNGSSFTSVDYHNDPELTKLIRSFSQQ 60

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           ED P RY++ YSKLRSW Y+SLDLYKHELL V+YPVFIHC+MDLV KGH QEAR FFN+F
Sbjct: 61  EDDPTRYREGYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARAFFNSF 120

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           R+DHEM+HLRDLQKLEGVLSPSHLEEMEFA SLR SKVNIK CQYSYELLLQYLH T ST
Sbjct: 121 RKDHEMVHLRDLQKLEGVLSPSHLEEMEFARSLRKSKVNIKFCQYSYELLLQYLHSTVST 180

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            MLGIINE INFQV  GQP+S SDD E VT++GS QD AN INQKE+ WGLLEDSLE+RL
Sbjct: 181 LMLGIINEHINFQVYSGQPTSSSDDIEAVTIVGSFQDTANHINQKEIQWGLLEDSLEDRL 240

Query: 241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
           EKTG L+SDSEK +GE+K+ + D++KKR  E GKQG+S+KKLKKDKA NATAK +RLE  
Sbjct: 241 EKTGGLLSDSEKGQGESKDGDADDSKKRSTEIGKQGSSLKKLKKDKAGNATAKVARLETI 300

Query: 300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
           TVS APRVKP+LALPVM T+VEQSILEDLRNRV LSS A+PSVSFYTF+NTHNGLNC+SI
Sbjct: 301 TVSPAPRVKPELALPVMSTDVEQSILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCSSI 360

Query: 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           S DGSLVAGGFSDSS+KVWDMAK+GQ A S  LQ END++ +   IGPNGR RSYTL  G
Sbjct: 361 SHDGSLVAGGFSDSSIKVWDMAKIGQ-AGSGALQAENDSSDQS--IGPNGR-RSYTLLLG 416

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSGPVYSA+FSP GDF+LSSSADTTIRLWSTKLNANLVCYKGHNYPVWD QF+P GHYFA
Sbjct: 417 HSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFA 476

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           S SHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV +GEC
Sbjct: 477 SCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGEC 536

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
           VRIFIGHRSM+LSLAMSPDGRYMASGDEDGTIMMWDL++ RC+TPLMGH SCVW+L+YS 
Sbjct: 537 VRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSG 596

Query: 600 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG-TNRLRSLKTLPTKSTPVYSLQVLR 656
           EGSLLASGSADCTVKLWDVT+STK+ K EEK+G +NRLRSL+T PTKSTPV++L+  R
Sbjct: 597 EGSLLASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFSR 654

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	656
TAIR|locus:2179300	669	TAF5 "AT5G25150" [Arabidopsis	0.993	0.974	0.768	3.3e-276
UNIPROTKB|E1BEN8	800	TAF5 "Uncharacterized protein"	0.596	0.488	0.436	5.7e-115
UNIPROTKB|E2RE41	801	TAF5 "Uncharacterized protein"	0.596	0.488	0.439	9.3e-115
MGI|MGI:2442144	801	Taf5 "TAF5 RNA polymerase II,	0.596	0.488	0.439	1.5e-114
RGD|1311332	798	Taf5 "TAF5 RNA polymerase II,	0.596	0.489	0.439	1.9e-114
UNIPROTKB|Q15542	800	TAF5 "Transcription initiation	0.596	0.488	0.439	3.1e-114
CGD|CAL0000165	798	orf19.536 [Candida albicans (t	0.551	0.453	0.428	6.3e-110
UNIPROTKB|E1C4U3	780	E1C4U3 "Uncharacterized protei	0.882	0.742	0.378	1.9e-106
ZFIN|ZDB-GENE-051120-180	756	taf5 "TAF5 RNA polymerase II,	0.841	0.730	0.389	1.1e-105
POMBASE|SPCC5E4.03c	643	taf5 "SAGA complex subunit/TAT	0.432	0.441	0.466	9.8e-97

TAIR|locus:2179300 TAF5 "AT5G25150" [Arabidopsis thaliana (taxid:3702)]

 Score = 2655 (939.7 bits), Expect = 3.3e-276, P = 3.3e-276
 Identities = 506/658 (76%), Positives = 569/658 (86%)

Query:     1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
             MD  Q+ EFV  YLKKKGFS A   L++   +N + ++   +D  NDPEL+K  R+FS+ 
Sbjct:     1 MDPEQINEFVVGYLKKKGFSSAAKDLESYHHQNNNGSSFTSVDYHNDPELTKLIRSFSQQ 60

Query:    61 EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
             ED P RY++ YSKLRSW Y+SLDLYKHELL V+YPVFIHC+MDLV KGH QEAR FFN+F
Sbjct:    61 EDDPTRYREGYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARAFFNSF 120

Query:   121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
             R+DHEM+HLRDLQKLEGVLSPSHLEEMEFA SLR SKVNIK CQYSYELLLQYLH T ST
Sbjct:   121 RKDHEMVHLRDLQKLEGVLSPSHLEEMEFARSLRKSKVNIKFCQYSYELLLQYLHSTVST 180

Query:   181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
              MLGIINE INFQV  GQP+S SDD E VT++GS QD AN INQKE+ WGLLEDSLE+RL
Sbjct:   181 LMLGIINEHINFQVYSGQPTSSSDDIEAVTIVGSFQDTANHINQKEIQWGLLEDSLEDRL 240

Query:   241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
             EKTG L+SDSEK +GE+K+ + D++KKR  E GKQG+S+KKLKKDKA NATAK +RLE  
Sbjct:   241 EKTGGLLSDSEKGQGESKDGDADDSKKRSTEIGKQGSSLKKLKKDKAGNATAKVARLETI 300

Query:   300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
             TVS APRVKP+LALPVM T+VEQSILEDLRNRV LSS A+PSVSFYTF+NTHNGLNC+SI
Sbjct:   301 TVSPAPRVKPELALPVMSTDVEQSILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCSSI 360

Query:   360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
             S DGSLVAGGFSDSS+KVWDMAK+GQ A S  LQ END++ +   IGPNGR RSYTL  G
Sbjct:   361 SHDGSLVAGGFSDSSIKVWDMAKIGQ-AGSGALQAENDSSDQS--IGPNGR-RSYTLLLG 416

Query:   420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
             HSGPVYSA+FSP GDF+LSSSADTTIRLWSTKLNANLVCYKGHNYPVWD QF+P GHYFA
Sbjct:   417 HSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFA 476

Query:   480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
             S SHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV +GEC
Sbjct:   477 SCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGEC 536

Query:   540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
             VRIFIGHRSM+LSLAMSPDGRYMASGDEDGTIMMWDL++ RC+TPLMGH SCVW+L+YS 
Sbjct:   537 VRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSG 596

Query:   600 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG-TNRLRSLKTLPTKSTPVYSLQVLR 656
             EGSLLASGSADCTVKLWDVT+STK+ K EEK+G +NRLRSL+T PTKSTPV++L+  R
Sbjct:   597 EGSLLASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFSR 654

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

UNIPROTKB|E1BEN8 TAF5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 835 (299.0 bits), Expect = 5.7e-115, Sum P(3) = 5.7e-115
 Identities = 183/419 (43%), Positives = 247/419 (58%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   378 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 429

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   430 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 489

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   490 ADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 548

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   549 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 608

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   609 ARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 668

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +S +G +LAS
Sbjct:   669 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILAS 728

Query:   607 GSADCTVKLWDVTTSTKVLKTEE-KSGTNRLRS--------LKTLPTKSTPVYSLQVLR 656
             GS D TV+LWD   + + ++T++  + T  +          L T  TKSTPV  L   R
Sbjct:   729 GSMDNTVRLWDAVKAFEDVETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTR 787

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E2RE41 TAF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 838 (300.0 bits), Expect = 9.3e-115, Sum P(3) = 9.3e-115
 Identities = 184/419 (43%), Positives = 247/419 (58%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   379 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 430

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   431 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 490

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   491 ADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 549

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   550 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 609

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   610 ARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 669

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +S +G +LAS
Sbjct:   670 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILAS 729

Query:   607 GSADCTVKLWDVTTSTKVLKTEE-KSGTNRLRS--------LKTLPTKSTPVYSLQVLR 656
             GS D TV+LWD   + + L+T++  + T  +          L T  TKSTPV  L   R
Sbjct:   730 GSMDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTR 788

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

MGI|MGI:2442144 Taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)]

 Score = 837 (299.7 bits), Expect = 1.5e-114, Sum P(3) = 1.5e-114
 Identities = 184/419 (43%), Positives = 247/419 (58%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   379 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 430

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   431 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 490

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   491 ADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 549

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   550 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 609

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   610 ARLWATDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 669

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +S +G +LAS
Sbjct:   670 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILAS 729

Query:   607 GSADCTVKLWDVTTSTKVLKTEE-KSGTNRLRS--------LKTLPTKSTPVYSLQVLR 656
             GS D TV+LWD   + + L+T++  + T  +          L T  TKSTPV  L   R
Sbjct:   730 GSMDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTR 788

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005669 "transcription factor TFIID complex" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISO

GO:0016573 "histone acetylation" evidence=ISO

GO:0033276 "transcription factor TFTC complex" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0046983 "protein dimerization activity" evidence=ISO

RGD|1311332 Taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Rattus norvegicus (taxid:10116)]

 Score = 835 (299.0 bits), Expect = 1.9e-114, Sum P(3) = 1.9e-114
 Identities = 184/419 (43%), Positives = 247/419 (58%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   376 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 427

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   428 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 487

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   488 ADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 546

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   547 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 606

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   607 ARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 666

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +S +G +LAS
Sbjct:   667 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILAS 726

Query:   607 GSADCTVKLWDVTTSTKVLKTEE-KSGTNRLRS--------LKTLPTKSTPVYSLQVLR 656
             GS D TV+LWD   + + L+T++  + T  +          L T  TKSTPV  L   R
Sbjct:   727 GSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTR 785

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0004402 "histone acetyltransferase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005669 "transcription factor TFIID complex" evidence=IEA;ISO

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0015629 "actin cytoskeleton" evidence=IEA;ISO

GO:0016573 "histone acetylation" evidence=ISO

GO:0033276 "transcription factor TFTC complex" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0046983 "protein dimerization activity" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q15542 TAF5 "Transcription initiation factor TFIID subunit 5" [Homo sapiens (taxid:9606)]

 Score = 835 (299.0 bits), Expect = 3.1e-114, Sum P(3) = 3.1e-114
 Identities = 184/419 (43%), Positives = 247/419 (58%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   378 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 429

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   430 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 489

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   490 ADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 548

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   549 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 608

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   609 ARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 668

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +S +G +LAS
Sbjct:   669 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILAS 728

Query:   607 GSADCTVKLWDVTTSTKVLKTEE-KSGTNRLRS--------LKTLPTKSTPVYSLQVLR 656
             GS D TV+LWD   + + L+T++  + T  +          L T  TKSTPV  L   R
Sbjct:   729 GSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTR 787

GO:0019048 "virus-host interaction" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IDA;TAS

GO:0005669 "transcription factor TFIID complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0033276 "transcription factor TFTC complex" evidence=IDA

GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA

GO:0016568 "chromatin modification" evidence=IC

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

CGD|CAL0000165 orf19.536 [Candida albicans (taxid:5476)]

 Score = 789 (282.8 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
 Identities = 166/387 (42%), Positives = 241/387 (62%)

Query:   266 KRPVEG--GKQGASIKKLKKDKAINATAKTSRLEANTVSTAPR---VKPDLALPVMPT-E 319
             K P++    K+  +  K+K +K      KT   E   ++   +   V+  L LP+    +
Sbjct:   366 KLPIDPDVAKEVEAELKIKDEKIEPVNNKTLTKEFQDMTKPDQDSPVRESLPLPLKDAND 425

Query:   320 VEQSIL--EDLRNRVHLSS--AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSL 375
             +++ I+  ED R+++ L +  A+LPSV  YTF NT+N + C   + D +LVA GF DS +
Sbjct:   426 IKKMIIQVEDSRSKIKLGAIQASLPSVCMYTFHNTNNNMTCIEFNDDSTLVAAGFQDSYI 485

Query:   376 KVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF 435
             K+W    L  + + S L+ +    P+E     N RK       GHSGPVY  SFSP   +
Sbjct:   486 KLWS---LDGKPLKSVLKRDRHK-PQE-----NTRKLI-----GHSGPVYGVSFSPDNKY 531

Query:   436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495
             +LS S D T+RLWS      LV YKGH  PVWDV+F+P GHYF ++SHD+TAR+W+ D I
Sbjct:   532 LLSCSEDKTVRLWSLDTYTALVSYKGHTQPVWDVKFSPLGHYFVTASHDQTARLWATDHI 591

Query:   496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555
              PLRI AGH++DVDCV +H N NY+ TGSSDKT R+WDV +G CVR+F+GH + +  LA+
Sbjct:   592 YPLRIFAGHINDVDCVEFHPNSNYVFTGSSDKTCRMWDVHTGNCVRVFLGHTNSVNCLAV 651

Query:   556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVK 614
             SPDGR++ASG EDG I +WD+ SGR +  + GH  + +++LA+S +G++L SG AD +V+
Sbjct:   652 SPDGRWLASGGEDGIICVWDIGSGRRLKSMRGHARASLYSLAFSRDGTVLVSGCADNSVR 711

Query:   615 LWDVTTSTKVLKTEEKSGTNRLRSLKT 641
             +WDV  +T     E ++  N +   +T
Sbjct:   712 VWDVKKNTNDAGPEPEAFNNNVNGNET 738

GO:0000124 "SAGA complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0046695 "SLIK (SAGA-like) complex" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|E1C4U3 E1C4U3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 237/626 (37%), Positives = 353/626 (56%)

Query:    46 NDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLV 105
             + P++S     +++  D P  Y++ YS L+++   SLD ++ EL  + YP+F+H +++LV
Sbjct:   174 DQPDVSAVLSAYNQQGD-PTLYEEYYSGLKNFIECSLDCHRAELSQLFYPLFVHMYLELV 232

Query:   106 AKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQY 165
                H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++I + 
Sbjct:   233 YNQHESEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRD 292

Query:   166 SYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAANQINQ 224
             SY+LL ++L + Q+ ++  I+ E +   +  G P S    DA + +L G   +A  + N+
Sbjct:   293 SYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAG---EAKREANK 349

Query:   225 KEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKD 284
              +V +GLL++       +  +  D E  EGEN+E +    KK+  +    G+  KK  +D
Sbjct:   350 AKVFFGLLKEP------EFDVPLDDEDEEGENEEGK---PKKKKAKRDSVGSKSKK--QD 398

Query:   285 KAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSF 344
                NA  +      N +   P +K    L  +        +++   RV L    LPS+ F
Sbjct:   399 P--NAPPQ------NRIPL-PELKDSDKLDKVMN------MKEAARRVRLGPECLPSICF 443

Query:   345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG-----LQGENDTT 399
             YTF+N + GL    I+ D S++ GGF+DS+++VW +     ++V +      +  E+D  
Sbjct:   444 YTFLNAYQGLTAVDITDDSSMIVGGFADSTVRVWSVTPKKLRSVKAAADLSLIDKESDDV 503

Query:   400 PREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY 459
               E I+          LY GHSGPVY  SFSP  +++LS S D T+RLWS +    LV Y
Sbjct:   504 -LERIMDEKTASELKILY-GHSGPVYGTSFSPDRNYLLSCSEDGTVRLWSLQTFTCLVGY 561

Query:   460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
             KGHNYPVWD QF+P G+YF S  HDR AR+W+ D  QPLRI AGHL+DV C R+H N NY
Sbjct:   562 KGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNY 621

Query:   520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
             IATGS+D+TVRLWDV +G CVRIF GH+  I SLA SP+GR++A+G  DG +++WD+  G
Sbjct:   622 IATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGRFLATGATDGRVLLWDIGHG 681

Query:   580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSGTNRLRS 638
               V  L GHT  ++ L +S +G +LASGS D TV+LWD   + + L+T++  + T  +  
Sbjct:   682 LMVGELKGHTDTIYALRFSRDGEILASGSMDNTVRLWDAVKAFEDLETDDFTTATGHINL 741

Query:   639 --------LKTLPTKSTPVYSLQVLR 656
                     L T  TKSTPV  L   R
Sbjct:   742 PENSQDLLLGTYMTKSTPVVHLHFTR 767

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

ZFIN|ZDB-GENE-051120-180 taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)]

 Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
 Identities = 230/590 (38%), Positives = 342/590 (57%)

Query:    46 NDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLV 105
             + P++S     +S+  D P+ Y+  YS L+ +  S LD ++ EL  + YP+F+H +++LV
Sbjct:   150 DQPDVSVVLSAYSQQGD-PSLYKVYYSDLKKFIESVLDCHRAELSQLFYPLFVHMYLELV 208

Query:   106 AKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQY 165
                H  EA+ FF+ F  D E  +  DL+ L G+    H++  E     R S+  ++I + 
Sbjct:   209 YNNHESEAKAFFDKFSGDQECYYEDDLRVLCGLTKKEHMKGNEALLDFRTSRFVLRISRD 268

Query:   166 SYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAANQINQ 224
             SY+LL ++L + Q+ ++  II E +   +  G P S S  D+   +L G   +A  ++N+
Sbjct:   269 SYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSLAG---EARREVNK 325

Query:   225 KEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKD 284
              +V +GLL+   E  +E   +  D E  E EN+E +    KK+  +    G+  KK  +D
Sbjct:   326 VKVFYGLLK---EPEIE---VPLDDEDEEAENEEGK---PKKKKTKKDSMGSKSKK--QD 374

Query:   285 KAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSF 344
                NA       + N +   P +K    L  +        +++   R+ L    LPS+ F
Sbjct:   375 P--NAP------QQNRIPL-PELKDSDKLDKI------MYMKESTKRIRLGPETLPSICF 419

Query:   345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG-----LQGENDTT 399
             YTF+N + GL     + D SL+AGGF+DS+++VW +     + V S      +  E+D  
Sbjct:   420 YTFLNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDV 479

Query:   400 PREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY 459
               E I+       S  L+ GHSGPVY  SFSP  +++LSSS D TIRLWS +    LV Y
Sbjct:   480 -LERIMDEKTSSESKILH-GHSGPVYGVSFSPDRNYLLSSSEDGTIRLWSLQTFTCLVGY 537

Query:   460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
             KGHNYPVWD QF+P G+YF S  HDR AR+W+ D  QPLRI AGHL+DV C R+H N NY
Sbjct:   538 KGHNYPVWDTQFSPFGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNY 597

Query:   520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
             +ATGSSD+TVRLWDV +G CVRIF GH+  I SLA SP+G+++ASG  DG +++WD+  G
Sbjct:   598 VATGSSDRTVRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGKFLASGSTDGRVLLWDIGHG 657

Query:   580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629
               +  L GHT  ++ L +S +G ++ASGS D TV+LWDV  +   ++T++
Sbjct:   658 LMIAELKGHTGTIYALKFSRDGEIIASGSIDNTVRLWDVMRAIDDVETDD 707

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

POMBASE|SPCC5E4.03c taf5 "SAGA complex subunit/TATA-binding protein associated factor/transcription factor TFIID complex subunit Taf5" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 717 (257.5 bits), Expect = 9.8e-97, Sum P(2) = 9.8e-97
 Identities = 141/302 (46%), Positives = 195/302 (64%)

Query:   318 TEVEQSILEDLRNRVHLSS-AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLK 376
             +EVE   ++D   R+HL   A+LPSV  YTF +T+N +NCA  S D +++A GF +S ++
Sbjct:   292 SEVEA--VKDWSKRLHLGPRASLPSVCMYTFHHTNNNMNCAEFSPDSTMIACGFQESYIR 349

Query:   377 VWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436
             +W + K  ++++         +T  ED  G      S  L   HSGPVY  +FSP   ++
Sbjct:   350 LWSI-KADKKSLPK-------STSVEDSDG------SVRLLS-HSGPVYGTTFSPDNKYL 394

Query:   437 LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496
             LS S D + RLWS      LV YKGH  PVWDV F P GHYFA++SHD+TA++WS D I 
Sbjct:   395 LSCSEDASARLWSVDTKTALVAYKGHTGPVWDVAFGPFGHYFATASHDQTAQLWSCDHIY 454

Query:   497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556
             PLR+ AGHLSDVDCV +H N  Y+ TGSSDKT RLWDV  G  VR+F GH   + ++A++
Sbjct:   455 PLRVFAGHLSDVDCVTFHPNSAYVLTGSSDKTCRLWDVHRGHSVRVFNGHTQPVTAVAIA 514

Query:   557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
             PDG  MAS D +G I +WD+ +GR +  + GH   +++L++S E ++L SG +DCTV+ W
Sbjct:   515 PDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSFSRESTVLVSGGSDCTVRAW 574

Query:   617 DV 618
             DV
Sbjct:   575 DV 576

GO:0000124 "SAGA complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005669 "transcription factor TFIID complex" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IC

GO:0016573 "histone acetylation" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49846	TAF5_DROME	No assigned EC number	0.3327	0.8810	0.8210	yes	no
O13282	TAF5_SCHPO	No assigned EC number	0.3357	0.8871	0.9051	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	656
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-68
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-65
pfam04494	141	pfam04494, TFIID_90kDa, WD40 associated region in	3e-56
cd08044	133	cd08044, TAF5_NTD2, TAF5_NTD2 is the second conser	3e-49
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-40
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-38
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-32
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-31
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-30
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-24
smart00320	40	smart00320, WD40, WD40 repeats	5e-10
smart00320	40	smart00320, WD40, WD40 repeats	3e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-09
smart00320	40	smart00320, WD40, WD40 repeats	3e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-08
smart00320	40	smart00320, WD40, WD40 repeats	7e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-07
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	5e-07
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	7e-07
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	7e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	5e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  224 bits (573), Expect = 3e-68
 Identities = 106/293 (36%), Positives = 156/293 (53%), Gaps = 31/293 (10%)

Query: 348 INTHNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKL---------------------GQ 385
           +  H G + C + S DG L+A G  D ++KVWD+                        G 
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64

Query: 386 QAVSSGLQGENDTTPRE-DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTT 444
              S      +D T R  D+      +   T   GH+  V S +FSP G  + SSS D T
Sbjct: 65  YLASGS----SDKTIRLWDL---ETGECVRT-LTGHTSYVSSVAFSPDGRILSSSSRDKT 116

Query: 445 IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504
           I++W  +    L   +GH   V  V F+P G + ASSS D T ++W +   + +  + GH
Sbjct: 117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176

Query: 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564
             +V+ V +  +   + + SSD T++LWD+S+G+C+    GH + + S+A SPDG  +AS
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236

Query: 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
           G EDGTI +WDL +G CV  L GHT+ V +LA+S +G  LASGSAD T+++WD
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  215 bits (550), Expect = 5e-65
 Identities = 88/238 (36%), Positives = 133/238 (55%), Gaps = 15/238 (6%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
            +GH+G V   +FSP G  + + S D TI++W  +    L   KGH  PV DV  +  G 
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           Y AS S D+T R+W ++  + +R + GH S V  V +  +   +++ S DKT+++WDV +
Sbjct: 65  YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596
           G+C+    GH   + S+A SPDG ++AS  +DGTI +WDL +G+CV  L GHT  V ++A
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184

Query: 597 YSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQV 654
           +S +G  L S S+D T+KLWD++T                + L TL      V S+  
Sbjct: 185 FSPDGEKLLSSSSDGTIKLWDLSTG---------------KCLGTLRGHENGVNSVAF 227

Length = 289

>gnl|CDD|203028 pfam04494, TFIID_90kDa, WD40 associated region in TFIID subunit

 Score =  187 bits (476), Expect = 3e-56
 Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 3/137 (2%)

Query: 58  SESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFF 117
           S  E  P +Y+  YS LR+W   SLD+YK EL  +LYP+F+H ++DLVAKGH  EAR+FF
Sbjct: 5   SPEESDPEQYERAYSLLRNWIEDSLDIYKPELSRLLYPLFVHSYLDLVAKGHPSEARSFF 64

Query: 118 NNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKT 177
           + F  D E +H  D++KL  +  P HL+E E A + R +K  I++ + S+ LLL++L + 
Sbjct: 65  DKFHGDFEQLHGEDIEKLRSISLPEHLKENELARAFRDNKYRIRLSRDSFSLLLRFLQEN 124

Query: 178 QST---KMLGIINERIN 191
           ++T    +L I+N+ + 
Sbjct: 125 ENTGGSLLLRILNQHLQ 141

This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown. Length = 141

>gnl|CDD|176269 cd08044, TAF5_NTD2, TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

 Score =  167 bits (426), Expect = 3e-49
 Identities = 58/133 (43%), Positives = 86/133 (64%)

Query: 64  PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFRED 123
           P  Y+  YSKLR W  SSLD+YK+EL  +LYP+F+H ++DLVA GH++EA++FF  F  D
Sbjct: 1   PNDYEQAYSKLRKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGD 60

Query: 124 HEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKML 183
            E  H  D++KL  + +P HL+E E A   R +K  I++ + +Y LLL++L     + +L
Sbjct: 61  FEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLLRFLESWGGSLLL 120

Query: 184 GIINERINFQVSP 196
            I+NE I+  V  
Sbjct: 121 KILNEHIDIDVRD 133

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. TAF5 has a paralog gene (TAF5L) which has a redundant function. Several hypotheses are proposed for TAFs functions such as serving as activator-binding sites, core-promoter recognition or a role in essential catalytic activity. C-terminus of TAF5 contains six WD40 repeats that likely form a closed beta propeller structure and may be involved in protein-protein interaction. The first part of the TAF5 N-terminal (TAF5_NTD1) homodimerizes in the absence of other TAFs. The second conserved N-terminal part of TAF5 (TAF5_NTD2) has an alpha-helical domain. One study has shown that TAF5_NTD2 homodimerizes only at high concentration of calcium but not any other metals. No dimerization was observed in other structural studies of TAF_NTD2. Several TAFs interact via histone-fold (HFD) motifs; HFD is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamer. However, TAF5 does not have a HFD motif. Length = 133

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  154 bits (388), Expect = 1e-40
 Identities = 98/292 (33%), Positives = 155/292 (53%), Gaps = 34/292 (11%)

Query: 345 YTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
            T     + ++  + S DG  L+A G SD ++++WD++                      
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST--------------------- 230

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGH 462
                  K   +   GHS  V S SFSP G  + S S+D TIRLW  + +++L+    GH
Sbjct: 231 ------GKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283

Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINCNYI 520
           +  V  V F+P G   AS S D T R+W ++  ++     + GH   V  + +  + + +
Sbjct: 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL 343

Query: 521 ATG-SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
            +G S D T+RLWD+ +G+ ++   GH S +LS++ SPDGR ++SG  DGT+ +WDL++G
Sbjct: 344 VSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402

Query: 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS 631
             +  L GHTS V +L +S +G  LASGS+D T++LWD+ TS K +      
Sbjct: 403 SLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDG 454

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  146 bits (369), Expect = 7e-38
 Identities = 108/324 (33%), Positives = 158/324 (48%), Gaps = 35/324 (10%)

Query: 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND 397
           +LP +S        + +   + S DG L+  G SD ++K+WD+                 
Sbjct: 52  SLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDL----------------- 94

Query: 398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-SPLGDFILS--SSADTTIRLWSTKLNA 454
                     NG K   +L   H   V   +  SP G+ IL   SS D T++LW      
Sbjct: 95  ---------DNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145

Query: 455 NLV-CYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
            L+   +GH+  V  + F+P G   AS S  D T ++W +   +PL  +AGH   V  + 
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205

Query: 513 WHINCN-YIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGT 570
           +  +    IA+GSSD T+RLWD+S+G+ +R    GH   ++S + SPDG  +ASG  DGT
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGT 264

Query: 571 IMMWDLASGR-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629
           I +WDL S    +  L GH+S V ++A+S +G LLASGS+D TV+LWD+ T   +     
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324

Query: 630 KSGTNRLRSLKTLPTKSTPVYSLQ 653
           K     + SL   P  S  V    
Sbjct: 325 KGHEGPVSSLSFSPDGSLLVSGGS 348

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  125 bits (315), Expect = 6e-32
 Identities = 55/128 (42%), Positives = 79/128 (61%)

Query: 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556
             R + GH   V CV +  +   +ATGS D T+++WD+ +GE +R   GH   +  +A S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
            DG Y+ASG  D TI +WDL +G CV  L GHTS V ++A+S +G +L+S S D T+K+W
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 617 DVTTSTKV 624
           DV T   +
Sbjct: 121 DVETGKCL 128

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  126 bits (316), Expect = 6e-31
 Identities = 81/242 (33%), Positives = 119/242 (49%), Gaps = 31/242 (12%)

Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
             + ++ H+    +S S DGSL+A G SD ++++WD+                       
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS------------------ 275

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKG 461
                          GHS  V S +FSP G  + S S+D T+RLW  +    L     KG
Sbjct: 276 ---------LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326

Query: 462 HNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
           H  PV  + F+P G    S  S D T R+W +   +PL+ + GH S+V  V +  +   +
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVV 385

Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
           ++GS+D TVRLWD+S+G  +R   GH S + SL  SPDG+ +ASG  D TI +WDL +  
Sbjct: 386 SSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSL 445

Query: 581 CV 582
             
Sbjct: 446 KS 447

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  122 bits (307), Expect = 9e-30
 Identities = 82/232 (35%), Positives = 131/232 (56%), Gaps = 10/232 (4%)

Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGH 462
              +    S  L +GH   + S +FSP G+ +LS S+D TI+LW       L+      H
Sbjct: 49  SLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH 108

Query: 463 NYPVWDVQF-NPQGHYFAS--SSHDRTARIWS-MDRIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V  +   +P G+      SS D T ++W      + +R + GH   V  + +  +  
Sbjct: 109 DSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK 168

Query: 519 YIATGSS-DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWDL 576
            +A+GSS D T++LWD+ +G+ +    GH   + SLA SPDG  + ASG  DGTI +WDL
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Query: 577 ASGRCVTP-LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
           ++G+ +   L GH+  V + ++S +GSLLASGS+D T++LWD+ +S+ +L+T
Sbjct: 229 STGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  107 bits (267), Expect = 1e-24
 Identities = 76/225 (33%), Positives = 120/225 (53%), Gaps = 12/225 (5%)

Query: 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ 470
           K+S      +S  + S   S  G  +L+  +D+ + L       + +  +GH   +  + 
Sbjct: 17  KKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDL----SSLLLRGHEDSITSIA 72

Query: 471 FNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWH---INCNYIATGSS 525
           F+P G    S S D T ++W +D        +   H S V  +       N   +A+ S 
Sbjct: 73  FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL 132

Query: 526 DKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLASGRCVT 583
           D TV+LWD+S+ G+ +R   GH   + SLA SPDG+ +ASG   DGTI +WDL +G+ ++
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192

Query: 584 PLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTKVLKT 627
            L GHT  V +LA+S +G  L+ASGS+D T++LWD++T   +  T
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 21/40 (52%), Positives = 29/40 (72%)

Query: 536 SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
           SGE ++   GH   + S+A SPDG+Y+ASG +DGTI +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 21/40 (52%), Positives = 27/40 (67%)

Query: 578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
           SG  +  L GHT  V ++A+S +G  LASGS D T+KLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
           G+ +R   GH   + S+A SPDG  +ASG +DGT+ +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
           + LR + GH   V  V +  + N +A+GS D TVR+WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
           G+ +  L GHT  V ++A+S +G+LLASGS D TV++WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
           + L+ + GH   V  V +  +  Y+A+GS D T++LWD
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 459 YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
            KGH  PV  V F+P G+  AS S D T R+W 
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 459 YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
            KGH  PV  V F+P G Y AS S D T ++W 
Sbjct: 8   LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWS 449
            +GH+GPV S +FSP G+ + S S D T+R+W 
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 53.9 bits (129), Expect = 2e-07
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 11/149 (7%)

Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-----YIATGSSDKTVRLWD 533
           ASS+ +   ++W + R Q +  M  H   V    W I+ +      +A+GS D +V+LW 
Sbjct: 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRV----WSIDYSSADPTLLASGSDDGSVKLWS 604

Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC-VTPLMGHTSCV 592
           ++ G  +       ++      S  GR +A G  D  +  +DL + +  +  ++GH+  V
Sbjct: 605 INQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV 664

Query: 593 WTLAYSCEGSLLASGSADCTVKLWDVTTS 621
             + +  + S L S S D T+KLWD++ S
Sbjct: 665 SYVRF-VDSSTLVSSSTDNTLKLWDLSMS 692

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWS 449
            +GH+GPV S +FSP G ++ S S D TI+LW 
Sbjct: 8   LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 52.3 bits (125), Expect = 7e-07
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 445 IRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW-------SMDRIQ 496
           IRL +      ++  KGH   + D+QFNP      AS S D T R+W       S+  I+
Sbjct: 56  IRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK 115

Query: 497 -PLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDV 534
            P  I+ GH   +  + W+    YI   S  D  V +WD+
Sbjct: 116 DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155

Length = 568

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 48.9 bits (116), Expect = 7e-06
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY-SCEGSLLASGSADCTVKLWDVTT 620
           +AS + +G + +WD+A  + VT +  H   VW++ Y S + +LLASGS D +VKLW +  
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607

Query: 621 STKVLKTEEKS 631
              +   + K+
Sbjct: 608 GVSIGTIKTKA 618

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 14/183 (7%)

Query: 461 GHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM-------DRIQPLRIMAGHLSDVDCVR 512
           G   P+ DV FNP       ++S D T   W +       +   P+  + GH   V  V 
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 513 WHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571
           +H +  N +A+  +D  V +WDV  G+ V +   H   I SL  + DG  + +  +D  +
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192

Query: 572 MMWDLASGRCVTPLMGHTS-----CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626
            + D   G  V+ +  H S     C+W        +L  S S    + LWD         
Sbjct: 193 NIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252

Query: 627 TEE 629
           T +
Sbjct: 253 TVD 255

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 47.8 bits (113), Expect = 2e-05
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 20/176 (11%)

Query: 453 NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI--------QPLRIMAGH 504
           ++NLVC  G         F+  G +FA++  ++  +I+  + I         P+  +A  
Sbjct: 482 SSNLVCAIG---------FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR 532

Query: 505 LSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM-SPDGRYM 562
            S +  + W+    + +A+ + +  V++WDV+  + V     H   + S+   S D   +
Sbjct: 533 -SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591

Query: 563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           ASG +DG++ +W +  G  +  +    +       S  G  LA GSAD  V  +D+
Sbjct: 592 ASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDL 647

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 47.0 bits (111), Expect = 3e-05
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 17/185 (9%)

Query: 436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDR 494
           + SS+ +  +++W    +  +   K H   VW + ++       AS S D + ++WS+++
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607

Query: 495 ---IQPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGEC-VRIFIGHRSM 549
              I  ++  A    ++ CV++       +A GS+D  V  +D+ + +  +   IGH S 
Sbjct: 608 GVSIGTIKTKA----NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SK 662

Query: 550 ILSLAMSPDGRYMASGDEDGTIMMWDL---ASGRCVTPL---MGHTSCVWTLAYSCEGSL 603
            +S     D   + S   D T+ +WDL    SG   TPL   MGHT+    +  S     
Sbjct: 663 TVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY 722

Query: 604 LASGS 608
           +A+GS
Sbjct: 723 IATGS 727

Length = 793

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 15/141 (10%)

Query: 418 QGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLV-------C-YKGHNYPVWD 468
           +GH+  +    F+P    IL+S S D TIR+W    N   V       C  KGH   +  
Sbjct: 71  KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130

Query: 469 VQFNPQGHY-FASSSHDRTARIWSMDRIQPLR--IMAGHLSDVDCVRWHINCNYIATGSS 525
           + +NP  +Y   SS  D    IW ++  +      M   LS    ++W+I  N ++    
Sbjct: 131 IDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSS---LKWNIKGNLLSGTCV 187

Query: 526 DKTVRLWDVSSGECVRIFIGH 546
            K + + D    E    F  H
Sbjct: 188 GKHMHIIDPRKQEIASSFHIH 208

Length = 568

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 10/127 (7%)

Query: 522 TGSSDKTVRLWDV--------SSGECVRIFIGHRSMILSLAMSPDGR-YMASGDEDGTIM 572
           T S D T+  W +         S   V +  GH   +  ++  P     +AS   D  + 
Sbjct: 93  TASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVN 151

Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632
           +WD+  G+ V  +  H+  + +L ++ +GSLL + S D  + + D    T V   E  + 
Sbjct: 152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS 211

Query: 633 TNRLRSL 639
               R L
Sbjct: 212 AKSQRCL 218

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	656
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
cd08044	133	TAF5_NTD2 TAF5_NTD2 is the second conserved N-term	100.0
PF04494	142	TFIID_90kDa: WD40 associated region in TFIID subun	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.98
KOG0296	399	consensus Angio-associated migratory cell protein	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.88
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.87
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.86
KOG2055	514	consensus WD40 repeat protein [General function pr	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.86
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG4328	498	consensus WD40 protein [Function unknown]	99.86
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.85
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.82
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.81
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.81
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.8
KOG0649	325	consensus WD40 repeat protein [General function pr	99.8
KOG1273	405	consensus WD40 repeat protein [General function pr	99.8
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.8
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.79
KOG4328	498	consensus WD40 protein [Function unknown]	99.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.77
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.77
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
KOG1963	792	consensus WD40 repeat protein [General function pr	99.73
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.73
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.72
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.72
PRK01742	429	tolB translocation protein TolB; Provisional	99.72
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.7
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.7
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.69
KOG0649	325	consensus WD40 repeat protein [General function pr	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.68
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.67
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.66
KOG1310	758	consensus WD40 repeat protein [General function pr	99.66
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.66
KOG1188	376	consensus WD40 repeat protein [General function pr	99.66
KOG2139	445	consensus WD40 repeat protein [General function pr	99.66
KOG1310	758	consensus WD40 repeat protein [General function pr	99.66
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.65
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.65
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.63
KOG1334	559	consensus WD40 repeat protein [General function pr	99.63
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.61
PRK11028	330	6-phosphogluconolactonase; Provisional	99.61
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.61
KOG1963	792	consensus WD40 repeat protein [General function pr	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.6
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.6
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.59
KOG2321	703	consensus WD40 repeat protein [General function pr	99.59
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.58
PRK05137	435	tolB translocation protein TolB; Provisional	99.58
KOG2139	445	consensus WD40 repeat protein [General function pr	99.58
PRK04922	433	tolB translocation protein TolB; Provisional	99.58
KOG4227	609	consensus WD40 repeat protein [General function pr	99.58
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
PRK04922	433	tolB translocation protein TolB; Provisional	99.57
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.55
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.55
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.55
PRK05137	435	tolB translocation protein TolB; Provisional	99.55
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.54
PRK02889	427	tolB translocation protein TolB; Provisional	99.54
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.51
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.49
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.48
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.45
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.44
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.44
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.43
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.43
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.42
KOG4547	541	consensus WD40 repeat-containing protein [General	99.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.4
PRK01029	428	tolB translocation protein TolB; Provisional	99.38
PRK01029	428	tolB translocation protein TolB; Provisional	99.37
PRK04792	448	tolB translocation protein TolB; Provisional	99.36
KOG2321	703	consensus WD40 repeat protein [General function pr	99.35
PRK04792	448	tolB translocation protein TolB; Provisional	99.35
KOG2315	566	consensus Predicted translation initiation factor	99.32
KOG4547	541	consensus WD40 repeat-containing protein [General	99.31
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.31
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.31
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.3
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.29
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.28
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.24
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.22
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.22
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.22
KOG1334	559	consensus WD40 repeat protein [General function pr	99.2
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.19
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.19
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.17
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.16
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.16
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.16
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.1
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.09
KOG2315	566	consensus Predicted translation initiation factor	99.08
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.06
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.06
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.05
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.04
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.02
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.01
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.99
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.98
KOG2314	698	consensus Translation initiation factor 3, subunit	98.98
PRK04043	419	tolB translocation protein TolB; Provisional	98.97
PRK04043	419	tolB translocation protein TolB; Provisional	98.97
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.94
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.92
COG4946	668	Uncharacterized protein related to the periplasmic	98.89
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.88
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.88
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.87
KOG2695	425	consensus WD40 repeat protein [General function pr	98.87
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.85
COG4946	668	Uncharacterized protein related to the periplasmic	98.84
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.83
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.81
KOG2314	698	consensus Translation initiation factor 3, subunit	98.79
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.79
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.74
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.72
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.72
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.72
KOG2695	425	consensus WD40 repeat protein [General function pr	98.71
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.7
KOG1333	241	consensus Uncharacterized conserved protein [Funct	98.7
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.69
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.69
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.68
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.68
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.67
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.67
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.63
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.62
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.56
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.56
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.55
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.54
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.51
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.5
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.5
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.45
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.45
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.45
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.44
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.41
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.37
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.29
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.28
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.27
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.26
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.24
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.2
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.16
PRK02888	635	nitrous-oxide reductase; Validated	98.15
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.15
PRK02888	635	nitrous-oxide reductase; Validated	98.13
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.12
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.1
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.03
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.03
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.01
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.98
KOG3621	726	consensus WD40 repeat-containing protein [General	97.95
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.93
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.92
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.89
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.89
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	97.87
KOG3621	726	consensus WD40 repeat-containing protein [General	97.84
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.83
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.78
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.78
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.76
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.74
COG3391	381	Uncharacterized conserved protein [Function unknow	97.69
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.69
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.65
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.64
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.62
COG3391	381	Uncharacterized conserved protein [Function unknow	97.58
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.57
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.57
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.52
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.5
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.37
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.34
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.33
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.28
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.27
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.23
PRK13616	591	lipoprotein LpqB; Provisional	97.22
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.22
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.21
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.21
PRK10115	686	protease 2; Provisional	97.21
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.11
PRK13616	591	lipoprotein LpqB; Provisional	97.09
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.05
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.02
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.98
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.95
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.94
KOG2444	238	consensus WD40 repeat protein [General function pr	96.92
PHA02713	557	hypothetical protein; Provisional	96.91
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.9
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.9
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	96.86
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.84
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.82
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.79
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.64
KOG2395	644	consensus Protein involved in vacuole import and d	96.62
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.59
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.52
PHA03098	534	kelch-like protein; Provisional	96.5
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.4
PRK10115	686	protease 2; Provisional	96.37
KOG2395	644	consensus Protein involved in vacuole import and d	96.31
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.27
KOG2444	238	consensus WD40 repeat protein [General function pr	96.22
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.2
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.19
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.18
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.08
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.07
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.06
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.02
PHA02713	557	hypothetical protein; Provisional	96.01
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.99
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.95
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.94
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.94
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.76
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.75
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.74
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.73
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.7
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.67
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.59
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.52
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.39
PHA02790	480	Kelch-like protein; Provisional	95.37
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.25
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.23
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.22
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.19
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.12
PHA03098	534	kelch-like protein; Provisional	95.12
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.11
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.01
KOG0396	389	consensus Uncharacterized conserved protein [Funct	94.88
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.87
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.8
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.71
PRK13684	334	Ycf48-like protein; Provisional	94.67
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.6
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.47
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	94.14
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.09
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.07
COG5167	776	VID27 Protein involved in vacuole import and degra	93.76
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.73
PHA02790	480	Kelch-like protein; Provisional	93.73
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.58
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.46
PRK13684	334	Ycf48-like protein; Provisional	93.33
COG5167	776	VID27 Protein involved in vacuole import and degra	93.31
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.0
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	92.68
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.29
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.69
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	90.66
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	90.59
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.32
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.31
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.07
KOG2247	615	consensus WD40 repeat-containing protein [General	90.05
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.87
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.61
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.44
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.28
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	89.27
KOG2247	615	consensus WD40 repeat-containing protein [General	88.9
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	88.88
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.56
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	88.52
PLN02193	470	nitrile-specifier protein	88.25
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.2
COG5276	370	Uncharacterized conserved protein [Function unknow	88.2
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.72
PF14727	418	PHTB1_N: PTHB1 N-terminus	87.61
COG5276	370	Uncharacterized conserved protein [Function unknow	87.38
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	87.12
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.7
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	86.61
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.29
KOG3616	1636	consensus Selective LIM binding factor [Transcript	86.09
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	85.72
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	85.52
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	85.52
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	85.21
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.04
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	85.0
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	84.87
PLN02153	341	epithiospecifier protein	84.64
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	84.63
PF13449	326	Phytase-like: Esterase-like activity of phytase	84.21
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	83.59
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	83.26
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	83.04
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	81.8
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	81.78
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	81.67
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	81.47
COG4590	733	ABC-type uncharacterized transport system, permeas	81.43
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	80.61
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	80.6
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	80.24
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	80.18

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.4e-102  Score=823.01  Aligned_cols=623  Identities=40%  Similarity=0.676  Sum_probs=499.6

Q ss_pred             CchHHHHHHHHHHHHhcCccHHHHHHHHHHhcCCCCCC-CCCC------------------CCCCc--------hhhccc
Q 006220            1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNN-TNPI------------------DILND--------PELSKF   53 (656)
Q Consensus         1 ~~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~-~~~~------------------~~~~~--------~~~~~~   53 (656)
                      +.+++++++|++||+|+||++||++||+|+.+..++.. ++..                  +...+        .++...
T Consensus        19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   98 (707)
T KOG0263|consen   19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVE   98 (707)
T ss_pred             cchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhh
Confidence            35689999999999999999999999999987665311 1000                  00000        011111


Q ss_pred             ccccccccC--ChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHH
Q 006220           54 FRTFSESED--GPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRD  131 (656)
Q Consensus        54 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~  131 (656)
                      ..   ....  -|++|+.+|..||.||+.|||+||+||.+||||+|||+||+|+++++.+.||.||++|+.||..+|.++
T Consensus        99 ~~---~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~  175 (707)
T KOG0263|consen   99 KA---LWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELSPILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSES  175 (707)
T ss_pred             hc---cccccCCChhHhhhhhhcchhhhCcchhhhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHH
Confidence            10   1123  488899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCc---chHhHhhcceeEEEEcCCC-CCCCCcccc
Q 006220          132 LQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGIINERINFQVSPGQ-PSSISDDAE  207 (656)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~---~~~~~i~~~~~~~~~~~~~-~~~~~~~~~  207 (656)
                      |++|..+..++||.+|+.++.||.|||+|+|++.+|++|++||++.+.   .+|++|||+||.|+++.+. ++....+.+
T Consensus       176 i~~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr~s~~lL~~~l~~~~~~~g~~i~~ii~~hldi~v~~~~~~r~~~~~~~  255 (707)
T KOG0263|consen  176 IFQLLSLETIKHIKENETARAFRKNKYVIRLSRDSFDLLLRFLQEDNNIGGTIIIKIINQHLDIDVFDGVMARRTTKPTA  255 (707)
T ss_pred             HHHHHhhhhHHHHhhhhhHHHHhhCcEEEEecHHHHHHHHHHhhhhccccchHHHHHHHHHhCccccccccccccccchh
Confidence            999999999999999999999999999999999999999999999877   8999999999999999873 222222222


Q ss_pred             -----ccccccCCchhhhcccccceeccCCcchhhhhhhhccccccchhhhcccchhhhhcccCCCCCCCCCCcchhchh
Q 006220          208 -----IVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLK  282 (656)
Q Consensus       208 -----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (656)
                           ...|+|.   ...+.|+.++++|+++...+  ++++.....      +.+|.        +.++..+.  .++.+
T Consensus       256 ~~g~~~~~i~g~---~~~e~~~~~~~l~~~~~e~~--~~~~~~~~~------e~~D~--------~~~~~~~~--~~~~~  314 (707)
T KOG0263|consen  256 MVGSEQESIAGE---AKREINKQKVQLGLLLKEEE--IEKKLPILL------EVEDD--------PNEPDNEK--LKKPK  314 (707)
T ss_pred             hccccccccccc---chhhcccceeeecccccchh--hhhcccccc------cCccc--------cccccccc--cccch
Confidence                 2245553   34566789999999998443  544321100      11111        11111110  11111


Q ss_pred             hhhhhhhcccccccccCcCCCCCCCCCCCCCCCCCh---hHHHHHHHHhccceecCCCCCCceeEEEEeeCCCCeEEEEE
Q 006220          283 KDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPT---EVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI  359 (656)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lp~~~~---~~~~~~~~~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~f  359 (656)
                      +.+.....   ...+++    +|. ++.+|+|+...   ..+...+.+.++++.+....+|++|+||+++...+++|+.|
T Consensus       315 ~~~~~~~~---k~~d~~----~ps-~d~iPlPp~~~~d~~~~~~~l~d~~kr~~l~~~~lpSic~YT~~nt~~~v~ca~f  386 (707)
T KOG0263|consen  315 KKKLLSEE---KKRDPN----APS-RDRIPLPPLKQVDKLAELEALKDEQKRVKLGRNSLPSICMYTFHNTYQGVTCAEF  386 (707)
T ss_pred             hhhhhhhh---hccccC----CCc-cccCCCCcccchhHHHHHHHHHHHHHHhhcCCCCCCcEEEEEEEEcCCcceeEee
Confidence            11111100   111111    232 67788887655   56667889999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCC----CCCccccCCCCCceeeEEeecCccCEEEEEEccCCCE
Q 006220          360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDT----TPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (656)
Q Consensus       360 s~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~  435 (656)
                      |+|+++||.|+.|++|++|.+...+..............    .....+. ..........+.||++||++++|+|+.++
T Consensus       387 SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~-D~~~~~~~~~L~GH~GPVyg~sFsPd~rf  465 (707)
T KOG0263|consen  387 SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDML-DDDSSGTSRTLYGHSGPVYGCSFSPDRRF  465 (707)
T ss_pred             cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhc-cccCCceeEEeecCCCceeeeeecccccc
Confidence            999999999999999999999864322221111100000    0111222 22333455669999999999999999999


Q ss_pred             EEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcC
Q 006220          436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI  515 (656)
Q Consensus       436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p  515 (656)
                      |++||+|++||+|++.++.+++.++||..|||++.|+|.|.||||||.|+++++|..+..+|.+++.+|.++|.|+.|||
T Consensus       466 LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP  545 (707)
T KOG0263|consen  466 LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP  545 (707)
T ss_pred             eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEE
Q 006220          516 NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTL  595 (656)
Q Consensus       516 ~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l  595 (656)
                      |++|++|||.|.+||+||+.+|..+|.|.||.++|++++|||+|++|++|+.||.|.+||+.+++.+..+.+|++.|.++
T Consensus       546 Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sl  625 (707)
T KOG0263|consen  546 NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSL  625 (707)
T ss_pred             cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCCceeec---------ccccCCccccccccccCCCCCeEEEEEcC
Q 006220          596 AYSCEGSLLASGSADCTVKLWDVTTSTKVLKT---------EEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       596 ~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~---------~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      .||.+|.+||+||.|++|++||+.........         ..........++..+++|.+||.+|+|||
T Consensus       626 sFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftr  695 (707)
T KOG0263|consen  626 SFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTR  695 (707)
T ss_pred             EEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEec
Confidence            99999999999999999999999876554111         11122345568999999999999999997

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-43  Score=347.48  Aligned_cols=268  Identities=31%  Similarity=0.594  Sum_probs=240.3

Q ss_pred             EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      -.+.+|.+.|.|+.|+|+|+.||+|+.|.++|+||+.+                            .....+..+|...|
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T----------------------------eTp~~t~KgH~~WV  160 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT----------------------------ETPLFTCKGHKNWV  160 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC----------------------------CCcceeecCCccEE
Confidence            35778999999999999999999999999999999986                            33556788999999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCCcee-EEeeCCCccEEEEEEec-----CCCEEEEEECCCcEEEEECCCCcee
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNP-----QGHYFASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~sp-----~~~~l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                      .|++|+|||+.|++|+.||+|++||..+++++ ..+.+|...|++++|.|     ..++|++++.||+++|||+..+.++
T Consensus       161 lcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~  240 (480)
T KOG0271|consen  161 LCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV  240 (480)
T ss_pred             EEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE
Confidence            99999999999999999999999999988875 67899999999999987     5679999999999999999999999


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-----------------------------------
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-----------------------------------  543 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-----------------------------------  543 (656)
                      ..+.+|..+|+|+.|--+| +|++||.|++|++|+...|.+.+.+                                   
T Consensus       241 ~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se  319 (480)
T KOG0271|consen  241 RTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE  319 (480)
T ss_pred             EEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence            9999999999999997554 8999999999999987655433322                                   


Q ss_pred             --------------------------------------------ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          544 --------------------------------------------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       544 --------------------------------------------~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                                                                  .+|..-|+.+.||||++++|+++-|.+|++||-++|
T Consensus       320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG  399 (480)
T KOG0271|consen  320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG  399 (480)
T ss_pred             HHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc
Confidence                                                        267777888999999999999999999999999999


Q ss_pred             eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      +.+..+++|-++|+.++|+.|.++|++|+.|.++++|++++.+               +..-+|++...|++|.+++
T Consensus       400 k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---------------l~~DLpGh~DEVf~vDwsp  461 (480)
T KOG0271|consen  400 KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---------------LKQDLPGHADEVFAVDWSP  461 (480)
T ss_pred             chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee---------------ecccCCCCCceEEEEEecC
Confidence            9999999999999999999999999999999999999998754               3445788888888888764

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.3e-42  Score=338.87  Aligned_cols=266  Identities=31%  Similarity=0.515  Sum_probs=246.8

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      ..+...+|..+.||.|+..||+|+-+|.++||+...                            .....++.||.+.|.+
T Consensus       171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~----------------------------~~~~~~l~gH~~~v~~  222 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ----------------------------CNLLQTLRGHTSRVGA  222 (459)
T ss_pred             hccCCCcceeeEeecCCCeEEEeecCCceeEeecCC----------------------------cceeEEEeccccceee
Confidence            456677899999999999999999999999999875                            3467789999999999


Q ss_pred             EEEccC--CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220          427 ASFSPL--GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (656)
Q Consensus       427 l~~spd--~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  504 (656)
                      +.|+|.  +..++||+.||++++|++.+...+..+.+|...|..++|+|+|++|+|++.|.+.++||+++...+....||
T Consensus       223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH  302 (459)
T KOG0272|consen  223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH  302 (459)
T ss_pred             EEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc
Confidence            999997  458999999999999999998999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEe
Q 006220          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP  584 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~  584 (656)
                      ...|.+++|+|+|..++||+.|..-||||+++|.++..+.+|..+|..++|+|+|..||||+.|++++|||++..+.+.+
T Consensus       303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~  382 (459)
T KOG0272|consen  303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT  382 (459)
T ss_pred             ccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCccEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEc
Q 006220          585 LMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVL  655 (656)
Q Consensus       585 ~~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ft  655 (656)
                      +.+|..-|+.+.|+| .|.+|+|++.|++++||.-.+..+               +..+.+|.+.|.||.++
T Consensus       383 ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~---------------~ksLaGHe~kV~s~Dis  439 (459)
T KOG0272|consen  383 IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP---------------LKSLAGHEGKVISLDIS  439 (459)
T ss_pred             cccccchhhheEecccCCeEEEEcccCcceeeecCCCccc---------------chhhcCCccceEEEEec
Confidence            999999999999999 789999999999999999887654               44555666666666654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.4e-41  Score=335.65  Aligned_cols=262  Identities=25%  Similarity=0.452  Sum_probs=245.1

Q ss_pred             HhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220          327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (656)
Q Consensus       327 ~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (656)
                      .....+++|+.... ....+|.+|.+.|.++.|+|.  +.-||+|+.||+|++|+++.                      
T Consensus       194 swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~----------------------  250 (459)
T KOG0272|consen  194 SWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ----------------------  250 (459)
T ss_pred             ecCCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC----------------------
Confidence            34556778875444 345588999999999999997  56899999999999999875                      


Q ss_pred             cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC
Q 006220          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (656)
Q Consensus       405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D  484 (656)
                            ...+..+.+|...|..++|+|+|++|+|+|.|.+-++||+.++..+....||..+|.+++|.|+|..++|||.|
T Consensus       251 ------e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD  324 (459)
T KOG0272|consen  251 ------ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD  324 (459)
T ss_pred             ------CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCcc
Confidence                  23556688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcC-CCCEEE
Q 006220          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMA  563 (656)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~L~  563 (656)
                      ..-+|||++++.++-.+.+|..+|.+|+|+|||-.|||||.|++++|||++...++.++.+|..-|+.+.|+| .|.+|+
T Consensus       325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~  404 (459)
T KOG0272|consen  325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLV  404 (459)
T ss_pred             chhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 789999


Q ss_pred             EEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       564 s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      |++.|++++||...++.+++.+.||.+.|.+++.+++++.++|++.|.+|++|.
T Consensus       405 TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  405 TASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999999999999999999999999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-40  Score=323.70  Aligned_cols=260  Identities=30%  Similarity=0.526  Sum_probs=234.3

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+... ..+.++..+|.+-|.|++|||||+.||+|+.||.|++||-.++                         
T Consensus       136 D~TvR~WD~~T-eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg-------------------------  189 (480)
T KOG0271|consen  136 DTTVRLWDLDT-ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG-------------------------  189 (480)
T ss_pred             CceEEeeccCC-CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC-------------------------
Confidence            34788998654 3456688999999999999999999999999999999996642                         


Q ss_pred             CCceeeEEeecCccCEEEEEEcc-----CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSP-----LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH  483 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~sp-----d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~  483 (656)
                        ...-+.+.+|...|++++|.|     ..++|+++|.||+|+|||+..+.++..+.+|+.+|+|++|.-+| ++++||.
T Consensus       190 --~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~  266 (480)
T KOG0271|consen  190 --QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQ  266 (480)
T ss_pred             --CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCC
Confidence              234466889999999999976     56799999999999999999999999999999999999998554 8999999


Q ss_pred             CCcEEEEECCCCc-------------------------------------------------------------------
Q 006220          484 DRTARIWSMDRIQ-------------------------------------------------------------------  496 (656)
Q Consensus       484 Dg~i~lwd~~~~~-------------------------------------------------------------------  496 (656)
                      |++|++|+...+.                                                                   
T Consensus       267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~  346 (480)
T KOG0271|consen  267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF  346 (480)
T ss_pred             CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence            9999999865321                                                                   


Q ss_pred             ------------eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220          497 ------------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       497 ------------~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s  564 (656)
                                  ++..+.+|..-|+.+.|+||++++|++|-|+.|++||-++|+.+..|.||-++|..++||.|.++|++
T Consensus       347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS  426 (480)
T KOG0271|consen  347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS  426 (480)
T ss_pred             eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence                        22334578888999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      |+.|.++++||+++.+....+.+|...|.++.|+|||+.+++|+.|..+++|.
T Consensus       427 ~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  427 GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            99999999999999999999999999999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.5e-37  Score=293.97  Aligned_cols=272  Identities=27%  Similarity=0.427  Sum_probs=236.8

Q ss_pred             EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccC----------CC--------CCCCCCCccccC
Q 006220          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL----------QG--------ENDTTPREDIIG  406 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~----------~~--------~~~~~~~~~~~~  406 (656)
                      .++.+|.+.|.|+.|++|+++|++++.||.+.|||.-+..+....+..          +.        .+.......+..
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~  128 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST  128 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence            578999999999999999999999999999999998764433221110          00        000111111111


Q ss_pred             C--CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEEC
Q 006220          407 P--NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSH  483 (656)
Q Consensus       407 ~--~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~  483 (656)
                      .  .+.....+.+.+|++-+.|+.|-+ ...|+++|.|.+..+||+++++.+..|.+|.+.|.+++++| +++.|++|+.
T Consensus       129 ~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c  207 (343)
T KOG0286|consen  129 RDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC  207 (343)
T ss_pred             ccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence            1  222345567899999999999987 56789999999999999999999999999999999999999 9999999999


Q ss_pred             CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC--CCCeEEEEEcCCCCE
Q 006220          484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRY  561 (656)
Q Consensus       484 Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g~~  561 (656)
                      |++.++||++.+.+++.|.+|.++|++|+|+|+|.-+++|+.|+++|+||++..+.+..+...  ..+|++++||..|++
T Consensus       208 D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl  287 (343)
T KOG0286|consen  208 DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL  287 (343)
T ss_pred             ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE
Confidence            999999999999999999999999999999999999999999999999999999998888733  358999999999999


Q ss_pred             EEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       562 L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      |++|..|..+.+||.-.++.+..+.+|.+.|.++..+|||.-+++|+.|.+++||.
T Consensus       288 Lfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  288 LFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999999999999999999999999999999999999994

>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

Probab=100.00  E-value=1.3e-38  Score=285.70  Aligned_cols=132  Identities=44%  Similarity=0.815  Sum_probs=129.3

Q ss_pred             hhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcCCChhh
Q 006220           64 PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSH  143 (656)
Q Consensus        64 ~~~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~  143 (656)
                      |..|+++|.+||+||+++||+||+||.++||||||||||+||++|+.++|++||++|+++|...|+++|++|++|++|+|
T Consensus         1 ~~~y~~~y~~l~~wv~~~ld~~k~EL~~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~   80 (133)
T cd08044           1 PNDYEQAYSKLRKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEH   80 (133)
T ss_pred             ChHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEc
Q 006220          144 LEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVS  195 (656)
Q Consensus       144 ~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~  195 (656)
                      +++|++++.||+|||+|+||+.++++|++||++.++.++++|||+|+.+++.
T Consensus        81 l~~n~~~~~~r~~Ky~i~ms~~s~~lL~~~L~~~~~~~~~~il~~~i~~~~~  132 (133)
T cd08044          81 LKENELAKLFRSNKYVIRMSRDAYSLLLRFLESWGGSLLLKILNEHIDIDVR  132 (133)
T ss_pred             HhhhHHHHHHHhCCEEEEECHHHHHHHHHHHHHCCcHHHHHHHHhccccccc
Confidence            9999999999999999999999999999999999999999999999888763

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various

>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID

Probab=100.00  E-value=2e-38  Score=287.41  Aligned_cols=133  Identities=44%  Similarity=0.821  Sum_probs=123.8

Q ss_pred             cccCChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcC
Q 006220           59 ESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGV  138 (656)
Q Consensus        59 ~~~~~~~~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~  138 (656)
                      ..+.||..|+++|.+|++||++|||+||+||+++||||||||||+||++|+.++|++||+||+++|...|.++|++|+.|
T Consensus         7 ~~~~~p~~y~~~y~~l~~wv~~sld~yK~EL~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i   86 (142)
T PF04494_consen    7 IEENDPDKYEQAYSRLRNWVDNSLDIYKPELSRLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSI   86 (142)
T ss_dssp             SS---GCCHHHHHHHHHHHHHTS-HHHHHHHGGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT-
T ss_pred             cccCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcc---hHhHhhcceeE
Q 006220          139 LSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST---KMLGIINERIN  191 (656)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~  191 (656)
                      ++|+|+++|++++.||+|||+|+||+.++++|+.||+++++.   +||+|||+||+
T Consensus        87 ~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~~fL~~~~~~g~~~ll~iin~~i~  142 (142)
T PF04494_consen   87 TSPEHLEENELARLFRSNKYVIRLSRDSFSLLLQFLQENENSGGSVLLRIINQHIQ  142 (142)
T ss_dssp             -SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHHHHHHHTTCHTHHHHHHHHHHHEE
T ss_pred             CcHHHHhccHHHHHHHhCCeeEEECHHHHHHHHHHHHhCCcchHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999998   99999999985

The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-35  Score=279.20  Aligned_cols=260  Identities=27%  Similarity=0.451  Sum_probs=230.5

Q ss_pred             EEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          345 YTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      -++.+|.+.|+.++..+. ...+.+++.|..|.+|++...                       ....+...+.+.||+..
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------------d~~~G~~~r~~~GHsH~   65 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------------DIKYGVPVRRLTGHSHF   65 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------------ccccCceeeeeeccceE
Confidence            367889999999999887 678889999999999999852                       11224567889999999


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~  503 (656)
                      |..+..++||++.++++.|+++++||+.+++....+.+|...|.+++|+++.+.+++|+.|++|++|++-..........
T Consensus        66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~  145 (315)
T KOG0279|consen   66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED  145 (315)
T ss_pred             ecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987554444443


Q ss_pred             -CCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 006220          504 -HLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (656)
Q Consensus       504 -~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~  580 (656)
                       +...|.|+.|+|+  ..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+.||.+.+||++.++
T Consensus       146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k  225 (315)
T KOG0279|consen  146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK  225 (315)
T ss_pred             CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence             3788999999998  6899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220          581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       581 ~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      .+..+ .|...|.+++|+|+.-.|+.+. +..|+|||+.+...+..+..
T Consensus       226 ~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~  272 (315)
T KOG0279|consen  226 NLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKL  272 (315)
T ss_pred             eeEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccc
Confidence            98776 6778999999999976665554 55699999999887765543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.7e-35  Score=297.41  Aligned_cols=249  Identities=28%  Similarity=0.528  Sum_probs=232.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ...|+|++|+.+|++||+|+.||.++||+...                             .....+..|.+||.++.|+
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-----------------------------~l~~tl~~HkgPI~slKWn  285 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-----------------------------NLISTLGQHKGPIFSLKWN  285 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc-----------------------------hhhhhhhccCCceEEEEEc
Confidence            45799999999999999999999999999763                             3556678899999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeE
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC  510 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~  510 (656)
                      .+|.+|++++.|+++.+||..+++....+.-|..+-.++.|-. ..-|++++.|+.|+++-+....|+.++.+|.+.|.+
T Consensus       286 k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~a  364 (524)
T KOG0273|consen  286 KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNA  364 (524)
T ss_pred             CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEE
Confidence            9999999999999999999999999999999998878899984 457999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC---------CEEEEEECCCcEEEEeCCCCee
Q 006220          511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---------RYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       511 v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g---------~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                      +.|+|.+..|+++|.|++++||....+.++..+.+|...|..+.|+|.|         ..+++++.|++|++||+..+.+
T Consensus       365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~  444 (524)
T KOG0273|consen  365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP  444 (524)
T ss_pred             EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce
Confidence            9999999999999999999999999999999999999999999999954         4799999999999999999999


Q ss_pred             eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220          582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       582 ~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      ++.+..|+.+|++++|+|+|+++|+|+.||.|.||++.+++.......
T Consensus       445 i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~  492 (524)
T KOG0273|consen  445 IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG  492 (524)
T ss_pred             eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC
Confidence            999999999999999999999999999999999999999887665543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=8.4e-35  Score=270.93  Aligned_cols=271  Identities=22%  Similarity=0.419  Sum_probs=238.6

Q ss_pred             HhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220          327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (656)
Q Consensus       327 ~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (656)
                      .....|++|.+ ...+|..++....+.|+.+.+.||+++||+| ....||+||+....                      
T Consensus        17 ~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~n----------------------   72 (311)
T KOG0315|consen   17 GYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKKDLAAA-GNQHVRLYDLNSNN----------------------   72 (311)
T ss_pred             cCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcchhhhc-cCCeeEEEEccCCC----------------------
Confidence            45678889975 4567888888888899999999999999998 56789999998622                      


Q ss_pred             CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCc
Q 006220          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (656)
Q Consensus       407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~  486 (656)
                          ......+.+|...|+++.|..+|+++++||+||+++|||++...+.+.++ |..+|.++..+|+...|++|..+|.
T Consensus        73 ----p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~  147 (311)
T KOG0315|consen   73 ----PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGN  147 (311)
T ss_pred             ----CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCc
Confidence                23667789999999999999999999999999999999999877777666 7799999999999999999999999


Q ss_pred             EEEEECCCCceeEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC------eeEEEEecCCCCeEEEEEcCCC
Q 006220          487 ARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG------ECVRIFIGHRSMILSLAMSPDG  559 (656)
Q Consensus       487 i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~------~~~~~~~~h~~~i~~l~~sp~g  559 (656)
                      |++||+....+.+.+. .....|.++..+|+|.+++.+...|.+++|++-+.      .++..++.|.+.+..+.+||++
T Consensus       148 irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~  227 (311)
T KOG0315|consen  148 IRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV  227 (311)
T ss_pred             EEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC
Confidence            9999999876665544 44567999999999999999999999999998754      4566788999999999999999


Q ss_pred             CEEEEEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220          560 RYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       560 ~~L~s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                      ++|++++.|.+++||+.... +.-..+.+|..-++.++||.||.+|++|+.|+.+++|++..++.+..
T Consensus       228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q  295 (311)
T KOG0315|consen  228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ  295 (311)
T ss_pred             cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence            99999999999999999877 55667789999999999999999999999999999999999876543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3e-36  Score=298.04  Aligned_cols=244  Identities=27%  Similarity=0.527  Sum_probs=223.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ...|..+.|.|+|+.|++|+..|.+.+|+...                            ...-..++.|..+|.++.|+
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~----------------------------fnFEtilQaHDs~Vr~m~ws  147 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS----------------------------FNFETILQAHDSPVRTMKWS  147 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCce----------------------------eeHHHHhhhhcccceeEEEc
Confidence            34699999999999999999999999999653                            11224467899999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCee
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD  509 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~  509 (656)
                      +++.+++||+.+|.|++|+..- ..+..+.. |...|.+++|+|+...|++||.||+|+|||....+..+.+.+|.-.|.
T Consensus       148 ~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk  226 (464)
T KOG0284|consen  148 HNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK  226 (464)
T ss_pred             cCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence            9999999999999999999874 34444444 558999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC
Q 006220          510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT  589 (656)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~  589 (656)
                      |++|||....|++|+.|..|++||.++|.|+.++.+|+..|..+.|+|++++|++++.|..++++|+++.+.+..+++|.
T Consensus       227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk  306 (464)
T KOG0284|consen  227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK  306 (464)
T ss_pred             eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCCc
Q 006220          590 SCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       590 ~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      ..|+++.|+| ...+|.+|+.||.|..|.+...+.
T Consensus       307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p  341 (464)
T KOG0284|consen  307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP  341 (464)
T ss_pred             hhheeeccccccccceeeccCCCceEEEecccccc
Confidence            9999999999 567899999999999999984443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-34  Score=270.23  Aligned_cols=248  Identities=27%  Similarity=0.429  Sum_probs=218.9

Q ss_pred             eeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc
Q 006220          342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (656)
Q Consensus       342 ~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~  421 (656)
                      .....+.+|...|+.+..++||++.++++.|+.+++||+..                            +...+.+.||.
T Consensus        54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~----------------------------g~~t~~f~GH~  105 (315)
T KOG0279|consen   54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT----------------------------GESTRRFVGHT  105 (315)
T ss_pred             ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC----------------------------CcEEEEEEecC
Confidence            34456788889999999999999999999999999999985                            35678899999


Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC--CccEEEEEEecC--CCEEEEEECCCcEEEEECCCCce
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQP  497 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~~~  497 (656)
                      .-|.+++|++|++.+++||.|.+|++|++.. .+..++..+  ..-|.|+.|+|+  ..+|+++|.|+++++||+++.+.
T Consensus       106 ~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l  184 (315)
T KOG0279|consen  106 KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL  184 (315)
T ss_pred             CceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence            9999999999999999999999999999984 454444433  788999999997  78999999999999999999999


Q ss_pred             eEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (656)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~  577 (656)
                      ...+.+|.+.++.++++|+|...++|+.||.+.+||++.++++..+. |...|.+++|+|+.-+|+.+. +..|+|||+.
T Consensus       185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~  262 (315)
T KOG0279|consen  185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLE  262 (315)
T ss_pred             hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEecc
Confidence            99999999999999999999999999999999999999999987764 788999999999977777665 4569999999


Q ss_pred             CCeeeEeeeC----C-----CccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          578 SGRCVTPLMG----H-----TSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       578 ~~~~~~~~~~----h-----~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      ++.++..+..    .     .....+++|+++|..|++|-.|+.|++|.+..
T Consensus       263 ~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  263 SKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             chhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence            9988877642    2     22356889999999999999999999998753

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-34  Score=283.67  Aligned_cols=255  Identities=27%  Similarity=0.476  Sum_probs=238.5

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+.+|...|+.+-|+|+-.++|+++.|++|++||..+                            +.....+.||...|.
T Consensus       103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~t----------------------------g~~e~~LrGHt~sv~  154 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTET----------------------------GELERSLRGHTDSVF  154 (406)
T ss_pred             hhhccccceeeeeeccCceEEEEecCCceEEEEEccc----------------------------hhhhhhhhcccccee
Confidence            4567888999999999999999999999999999875                            334567889999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccC-CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  504 (656)
                      .++|+..|+++++|+.|-.+.+||..+ .+++....+|...|.++.|-|.|.++++++.|.+|+.|+++++.++..+.+|
T Consensus       155 di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h  234 (406)
T KOG0295|consen  155 DISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH  234 (406)
T ss_pred             EEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc
Confidence            999999999999999999999999986 5678888899999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC---------------CCEEEEEECCC
Q 006220          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD---------------GRYMASGDEDG  569 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~---------------g~~L~s~~~dg  569 (656)
                      ...|..++.+.+|..+++++.|.+|++|-+.+++|...++.|..+|-|++|.|.               |.++++++.|+
T Consensus       235 ~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk  314 (406)
T KOG0295|consen  235 SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK  314 (406)
T ss_pred             hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence            999999999999999999999999999999999999999999999999999872               35999999999


Q ss_pred             cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       570 ~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      +|++||+.+|.++.++.+|...|.+++|+|.|++|+|+..|+++++||+.+.+++...+
T Consensus       315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence            99999999999999999999999999999999999999999999999999988766554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.2e-34  Score=308.87  Aligned_cols=208  Identities=33%  Similarity=0.620  Sum_probs=199.8

Q ss_pred             eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       343 ~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      ...++.+|.++|..+.|+|+.++|++++.|++||+|++.+                            ......+.||..
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t----------------------------~s~~V~y~GH~~  494 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT----------------------------WSCLVIYKGHLA  494 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeeccc----------------------------ceeEEEecCCCc
Confidence            3456899999999999999999999999999999999986                            346677889999


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~  502 (656)
                      ||+++.|+|-|-+++|||.|++-++|..+....++.+.+|.+.|.|+.|+|+.+|+++||.|+++++||+.++..++.|.
T Consensus       495 PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~  574 (707)
T KOG0263|consen  495 PVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT  574 (707)
T ss_pred             ceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      ||.++|.+++|+|+|++|++|+.||.|.+||+.++..+..+.+|++.|.++.||.+|..||+|+.|++|++||+..
T Consensus       575 GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  575 GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999854

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.9e-34  Score=271.63  Aligned_cols=269  Identities=25%  Similarity=0.448  Sum_probs=237.7

Q ss_pred             EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      ..+.+|.+.|.++.|+|+|.+||+|+.|..|.+|++..                           .......+.+|++.|
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g---------------------------dceN~~~lkgHsgAV   93 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG---------------------------DCENFWVLKGHSGAV   93 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc---------------------------cccceeeecccccee
Confidence            34678899999999999999999999999999999764                           134556677999999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEECCCcEEEEECCCCceeEEecC
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~Dg~i~lwd~~~~~~~~~~~~  503 (656)
                      ..+.|.+|++.+++++.|.+|+.||+++++++..+++|...|..+.-+.-|. ++.+|+.||++++||+++..++..+. 
T Consensus        94 M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-  172 (338)
T KOG0265|consen   94 MELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-  172 (338)
T ss_pred             EeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-
Confidence            9999999999999999999999999999999999999999999998555444 56778899999999999988888775 


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC----C
Q 006220          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----G  579 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~----~  579 (656)
                      ..-.++++.|...+..+.+|+-|+.|++||++.+....++.||..+|+.|..+|+|.++.+-+.|.++++||++.    .
T Consensus       173 ~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~  252 (338)
T KOG0265|consen  173 NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ  252 (338)
T ss_pred             cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCC
Confidence            446799999999999999999999999999999999999999999999999999999999999999999999974    3


Q ss_pred             eeeEeeeCCC----ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEc
Q 006220          580 RCVTPLMGHT----SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVL  655 (656)
Q Consensus       580 ~~~~~~~~h~----~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ft  655 (656)
                      +++..+.+|.    .....++|+|+++.+.+|+.|..+++||..+..               .++.+|++...|.+++|-
T Consensus       253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~---------------~lyklpGh~gsvn~~~Fh  317 (338)
T KOG0265|consen  253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR---------------ILYKLPGHYGSVNEVDFH  317 (338)
T ss_pred             ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc---------------EEEEcCCcceeEEEeeec
Confidence            5677777764    345678999999999999999999999987643               566778888888888875


Q ss_pred             C
Q 006220          656 R  656 (656)
Q Consensus       656 r  656 (656)
                      +
T Consensus       318 p  318 (338)
T KOG0265|consen  318 P  318 (338)
T ss_pred             C
Confidence            3

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-34  Score=301.48  Aligned_cols=296  Identities=26%  Similarity=0.416  Sum_probs=265.1

Q ss_pred             cccccCcCCCCCCCCCCCCCCCCChhHHHHHHHHhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCC
Q 006220          294 SRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDS  373 (656)
Q Consensus       294 ~~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg  373 (656)
                      .+..+.++.++|.+..++++..++|+..+.+...+...+++|+.....+....-++ .+.|+++.|+++|++||+|..+|
T Consensus       161 ~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g  239 (484)
T KOG0305|consen  161 IPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDG  239 (484)
T ss_pred             ccCChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCC
Confidence            34567889999999999999999999888888899999999999888866655555 78899999999999999999999


Q ss_pred             cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec-CccCEEEEEEccCCCEEEEEeCCCeEEEEeccC
Q 006220          374 SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-HSGPVYSASFSPLGDFILSSSADTTIRLWSTKL  452 (656)
Q Consensus       374 ~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~  452 (656)
                      .|.|||....                            .....+.+ |.+.|-+++|+  +..+.+|+.|+.|..+|++.
T Consensus       240 ~v~iwD~~~~----------------------------k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~  289 (484)
T KOG0305|consen  240 TVQIWDVKEQ----------------------------KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI  289 (484)
T ss_pred             eEEEEehhhc----------------------------cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEec
Confidence            9999998752                            23333445 99999999999  67899999999999999998


Q ss_pred             CceeEE-eeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcC-CCCEEEEE--ECCCc
Q 006220          453 NANLVC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATG--SSDKT  528 (656)
Q Consensus       453 ~~~~~~-~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tg--s~dg~  528 (656)
                      ...... +.+|...|+.+.|++++.++|+|+.|+.+.|||.....++..+..|...|.+++|+| ....||+|  +.|++
T Consensus       290 ~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~  369 (484)
T KOG0305|consen  290 SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC  369 (484)
T ss_pred             chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence            877665 889999999999999999999999999999999999999999999999999999999 56788885  47999


Q ss_pred             EEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEE--EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEE
Q 006220          529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS--GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS  606 (656)
Q Consensus       529 V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s--~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s  606 (656)
                      |++||+.+|..+.... ..+.|..|.|++..+-|++  |..++.|.||+..+.+.+..+.+|...|..++++|||..+++
T Consensus       370 i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t  448 (484)
T KOG0305|consen  370 IKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT  448 (484)
T ss_pred             EEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence            9999999999998775 4578999999999877776  456789999999999999999999999999999999999999


Q ss_pred             EECCCcEEEEeCCCC
Q 006220          607 GSADCTVKLWDVTTS  621 (656)
Q Consensus       607 gs~Dg~I~iWd~~~~  621 (656)
                      |+.|.++++|++...
T Consensus       449 ~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  449 GAADETLRFWNLFDE  463 (484)
T ss_pred             ecccCcEEeccccCC
Confidence            999999999999875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.6e-35  Score=285.34  Aligned_cols=260  Identities=28%  Similarity=0.571  Sum_probs=227.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      ...+|.|+.+.  ...+++|..|.+|+|||.+.                            ......+.||+|.|.|+.|
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~----------------------------~~c~~~L~GHtGSVLCLqy  245 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS----------------------------LECLKILTGHTGSVLCLQY  245 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEecccc----------------------------HHHHHhhhcCCCcEEeeec
Confidence            45679999984  45799999999999999875                            3355678899999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce---eEEecCCCC
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAGHLS  506 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~---~~~~~~~~~  506 (656)
                      .  .+.+++||.|.+|++||+++++++.++-+|...|..+.|+  ..+++++|.|+++.+||+.....   .+.+.||..
T Consensus       246 d--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA  321 (499)
T KOG0281|consen  246 D--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA  321 (499)
T ss_pred             c--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh
Confidence            6  5799999999999999999999999999999999999997  56999999999999999987653   356779999


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee
Q 006220          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~  586 (656)
                      .|+.+.|+  .+|+++++.|.+|++|++.++++++++.+|...|-|+.+.  |+++++|++|.+|++||+..|.++..+.
T Consensus       322 aVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLe  397 (499)
T KOG0281|consen  322 AVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE  397 (499)
T ss_pred             heeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHh
Confidence            99999995  4599999999999999999999999999999999999886  8999999999999999999999999999


Q ss_pred             CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEc
Q 006220          587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVL  655 (656)
Q Consensus       587 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ft  655 (656)
                      ||..-|.++.|.  .+.+++|+.||+|+|||+..+....      ....--.+.++-.++..|+.++|-
T Consensus       398 GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpr------a~~~~~Cl~~lv~hsgRVFrLQFD  458 (499)
T KOG0281|consen  398 GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPR------APASTLCLRTLVEHSGRVFRLQFD  458 (499)
T ss_pred             chHHhhhheeec--CceeeeccccceEEEEecccccCCc------ccccchHHHhhhhccceeEEEeec
Confidence            999999999996  6689999999999999998865322      111222455667778889998884

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=8.3e-34  Score=276.15  Aligned_cols=260  Identities=23%  Similarity=0.471  Sum_probs=241.1

Q ss_pred             CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec
Q 006220          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (656)
Q Consensus       340 ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  419 (656)
                      |-.....+.+|.+-|.|+++.|-..++++|+.|++|+|||+.+                            +.....+.|
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat----------------------------g~LkltltG  191 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT----------------------------GQLKLTLTG  191 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc----------------------------CeEEEeecc
Confidence            3333445678889999999999999999999999999999986                            455667889


Q ss_pred             CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~  499 (656)
                      |-..|..+++|+-..|+++++.|+.|+.||+...+.+..|.||-+.|.|++.+|.-..+++|+.|.++++||+++...+.
T Consensus       192 hi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~  271 (460)
T KOG0285|consen  192 HIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH  271 (460)
T ss_pred             hhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                      .+.||..+|..+.+.|-...+++||.|++|++||++.|+....+..|...+.+++.+|....+|+++.| .|+-|++..|
T Consensus       272 ~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g  350 (460)
T KOG0285|consen  272 VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG  350 (460)
T ss_pred             EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc
Confidence            999999999999999988899999999999999999999999999999999999999999999999887 5999999999


Q ss_pred             eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220          580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      ..+..+.+|+..|.+++.+.|+ ++++|+..|.+.+||.+++..-+..+.
T Consensus       351 ~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t  399 (460)
T KOG0285|consen  351 EFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQT  399 (460)
T ss_pred             chhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccc
Confidence            9999999999999999998776 788999999999999999887665543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.8e-35  Score=290.16  Aligned_cols=261  Identities=25%  Similarity=0.464  Sum_probs=230.5

Q ss_pred             ccceecCCCCCCceeE-EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220          329 RNRVHLSSAALPSVSF-YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~-~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (656)
                      ...+.||+...  ..+ ..+..|.+.|+++.||++|.++++|..+|.|++|+..-                         
T Consensus       117 SGEFtLWNg~~--fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-------------------------  169 (464)
T KOG0284|consen  117 SGEFTLWNGTS--FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-------------------------  169 (464)
T ss_pred             cccEEEecCce--eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-------------------------
Confidence            34566776521  111 12457888999999999999999999999999999763                         


Q ss_pred             CCCceeeEEeec-CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCc
Q 006220          408 NGRKRSYTLYQG-HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (656)
Q Consensus       408 ~~~~~~~~~l~~-h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~  486 (656)
                          ..+....+ |...|.+++|||+...+++||.||+|+|||....+.-..+.+|...|.+++|+|....+++||.|..
T Consensus       170 ----nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnl  245 (464)
T KOG0284|consen  170 ----NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNL  245 (464)
T ss_pred             ----hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCce
Confidence                12223334 4599999999999999999999999999999988888888999999999999999999999999999


Q ss_pred             EEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC-CCEEEEE
Q 006220          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-GRYMASG  565 (656)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~-g~~L~s~  565 (656)
                      |++||.+++.++.++.+|...|..+.|+|++++|+|+|.|..++++|+++-+.++++++|...++++.|+|- ..+|.+|
T Consensus       246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg  325 (464)
T KOG0284|consen  246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG  325 (464)
T ss_pred             eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec
Confidence            999999999999999999999999999999999999999999999999999999999999999999999994 5688899


Q ss_pred             ECCCcEEEEeCCCCeeeEeee-CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          566 DEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       566 ~~dg~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      +.||.|..|.+...+++..+. +|.+.|++++|+|-|.+|++|+.|.++++|.-..
T Consensus       326 g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  326 GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence            999999999998666666554 7999999999999999999999999999998654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.8e-33  Score=303.70  Aligned_cols=253  Identities=31%  Similarity=0.618  Sum_probs=228.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ...|+|+.|+++|+++++++.++.+++|++.....                          .....+.+|...|.+++|+
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------------~~~~~l~~h~~~v~~~~fs  212 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------------NLLRELSGHTRGVSDVAFS  212 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------------hhhccccccccceeeeEEC
Confidence            67899999999999999999999999999854110                          1233447899999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEec-cCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCee
Q 006220          431 PLGDFILSSSADTTIRLWST-KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD  509 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~  509 (656)
                      |+++++++|+.|++|++||+ ..+.++.++++|...|++++|+|+|+.+++|+.|++|++||++++++++.+.+|...|+
T Consensus       213 ~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is  292 (456)
T KOG0266|consen  213 PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS  292 (456)
T ss_pred             CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence            99999999999999999999 55688999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCe--eEEEEecCCCC--eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220          510 CVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~V~iwd~~~~~--~~~~~~~h~~~--i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      +++|++++++|++++.|+.|++||+.++.  ++..+.++...  ++++.|+|+|.++++++.|+.+++||+..+.++..+
T Consensus       293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence            99999999999999999999999999999  67777777665  999999999999999999999999999999999999


Q ss_pred             eCCCcc---EEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220          586 MGHTSC---VWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       586 ~~h~~~---V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      .+|...   +.+...++.+.++++|+.|+.|.+|++.++........
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~  419 (456)
T KOG0266|consen  373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG  419 (456)
T ss_pred             cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC
Confidence            998864   44555678999999999999999999998766554443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.9e-32  Score=273.64  Aligned_cols=252  Identities=37%  Similarity=0.697  Sum_probs=230.2

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      ++.+|.+.|+|++|+|++++|++|+.+|.|++|++...                            .....+.+|...+.
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~----------------------------~~~~~~~~~~~~i~   55 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG----------------------------ELLRTLKGHTGPVR   55 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC----------------------------CcEEEEecCCccee
Confidence            35578899999999999999999999999999998741                            13445667889999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~  505 (656)
                      ++.|+|+++++++++.||.|++|++.++..+..+..|...|.++.|++++.++++++.||.+++||+++.+....+..|.
T Consensus        56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  135 (289)
T cd00200          56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT  135 (289)
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC
Confidence            99999999999999999999999999888888888999999999999998889988889999999999888888888999


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      ..+.+++|+|++.++++++.++.|++||+++++.+..+..|...+.++.|+|+++.+++++.||.|++||+..++.+..+
T Consensus       136 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  215 (289)
T cd00200         136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL  215 (289)
T ss_pred             CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch
Confidence            99999999999999999888999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       586 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      ..|...|.+++|++++.++++++.||.|++|++.++....
T Consensus       216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~  255 (289)
T cd00200         216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ  255 (289)
T ss_pred             hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEE
Confidence            8899999999999999899988889999999998755443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=275.49  Aligned_cols=260  Identities=31%  Similarity=0.543  Sum_probs=237.8

Q ss_pred             ceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCC
Q 006220          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGR  410 (656)
Q Consensus       331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (656)
                      .++.|+...... .-.+.+|.++|..++|+..|++||+++.|-.+++||....                           
T Consensus       131 tikv~D~~tg~~-e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---------------------------  182 (406)
T KOG0295|consen  131 TIKVFDTETGEL-ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---------------------------  182 (406)
T ss_pred             eEEEEEccchhh-hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH---------------------------
Confidence            344444333322 3456788899999999999999999999999999998741                           


Q ss_pred             ceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEE
Q 006220          411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW  490 (656)
Q Consensus       411 ~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lw  490 (656)
                      ...++.+.+|...|.++.|-|.|.+++|++.|.+|+.|++.++-++.++.+|..-|..++.+.||.++++|+.|.++++|
T Consensus       183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW  262 (406)
T KOG0295|consen  183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW  262 (406)
T ss_pred             HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence            23556678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCceeEEecCCCCCeeEEEEcCC---------------CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEE
Q 006220          491 SMDRIQPLRIMAGHLSDVDCVRWHIN---------------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM  555 (656)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~---------------~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~  555 (656)
                      -+.+.++...+++|.-+|.|++|-|.               +.++++++.|++|++||+.+|.|+.++.+|...|..++|
T Consensus       263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af  342 (406)
T KOG0295|consen  263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAF  342 (406)
T ss_pred             EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEE
Confidence            99999999999999999999999752               258999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       556 sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      +|.|+||+++.+|+++++||+++++|++.+..|...|++++|+.+..+++||+.|.++++|..
T Consensus       343 ~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  343 SPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999999999999999999999999999999999999999999999999999974

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.4e-34  Score=289.31  Aligned_cols=251  Identities=26%  Similarity=0.446  Sum_probs=226.4

Q ss_pred             CCceeEEEEeeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220          339 LPSVSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (656)
Q Consensus       339 ~ps~~~~~~~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  417 (656)
                      +|....+++.+|..+|+++.|.| .+.+|++|+.|+.|+||++..                           ....++++
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---------------------------~~~~lrtf  254 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---------------------------DRRCLRTF  254 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------------------------Ccceehhh
Confidence            46777789999999999999999 799999999999999999874                           24577889


Q ss_pred             ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCc
Q 006220          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQ  496 (656)
Q Consensus       418 ~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~  496 (656)
                      .||..+|..++|+++|..++|+|.|++|++||+++|+++..+.. ...+.|+.|+|++ +.|++|+.|+.|+.||+++++
T Consensus       255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k  333 (503)
T KOG0282|consen  255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK  333 (503)
T ss_pred             hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence            99999999999999999999999999999999999999998874 5578899999988 889999999999999999999


Q ss_pred             eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEE-----------------------------------
Q 006220          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-----------------------------------  541 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~-----------------------------------  541 (656)
                      .++.+..|.+.|..+.|-++|.++++++.|++++||+.+.+..+.                                   
T Consensus       334 vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs  413 (503)
T KOG0282|consen  334 VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS  413 (503)
T ss_pred             HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence            999999999999999999999999999999999999986543221                                   


Q ss_pred             -----------EEecCC--CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCC-CCEEEEE
Q 006220          542 -----------IFIGHR--SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE-GSLLASG  607 (656)
Q Consensus       542 -----------~~~~h~--~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~sg  607 (656)
                                 .|.||.  +.-..+.|||||++|++|+.||.+.+||.++.+.+..++.|.+++..+.|+|. ...+|+|
T Consensus       414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~  493 (503)
T KOG0282|consen  414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATC  493 (503)
T ss_pred             cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEec
Confidence                       123554  34567899999999999999999999999999999999999999999999995 5689999


Q ss_pred             ECCCcEEEEe
Q 006220          608 SADCTVKLWD  617 (656)
Q Consensus       608 s~Dg~I~iWd  617 (656)
                      +.||.|++|+
T Consensus       494 ~w~G~Ikiwd  503 (503)
T KOG0282|consen  494 GWDGLIKIWD  503 (503)
T ss_pred             ccCceeEecC
Confidence            9999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-32  Score=254.39  Aligned_cols=275  Identities=24%  Similarity=0.386  Sum_probs=238.3

Q ss_pred             CCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee
Q 006220          339 LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ  418 (656)
Q Consensus       339 ~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  418 (656)
                      +|......+-.+.+.|..+.|+-||+|.++++.|.+|++|+...                            +..+..+.
T Consensus         5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r----------------------------g~liktYs   56 (307)
T KOG0316|consen    5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR----------------------------GALIKTYS   56 (307)
T ss_pred             CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc----------------------------cceeeeec
Confidence            45555566778899999999999999999999999999999654                            45678899


Q ss_pred             cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC--Cc
Q 006220          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR--IQ  496 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~--~~  496 (656)
                      +|...|..++.+.|+..+++|+.|..|.+||+.+|+.+..+.+|...|+.++|+.+...+++|+.|.++++||.++  .+
T Consensus        57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e  136 (307)
T KOG0316|consen   57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE  136 (307)
T ss_pred             CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999875  57


Q ss_pred             eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      |++++......|.++...  +..|++|+.||++|.||++.|+...-..+  .+|+|++|+++|+..++++.|+++++.|-
T Consensus       137 PiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk  212 (307)
T KOG0316|consen  137 PIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDK  212 (307)
T ss_pred             ccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeeccc
Confidence            889998888889998874  56899999999999999999998776655  58999999999999999999999999999


Q ss_pred             CCCeeeEeeeCCCccEE--EEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCC
Q 006220          577 ASGRCVTPLMGHTSCVW--TLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS  646 (656)
Q Consensus       577 ~~~~~~~~~~~h~~~V~--~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~  646 (656)
                      .+|+.+..+++|...-+  ..+++.....+++|+.||.|++||+.....+.+....... -+..+...|+..
T Consensus       213 ~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-~v~dl~~hp~~~  283 (307)
T KOG0316|consen  213 ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-IVTDLSCHPTMD  283 (307)
T ss_pred             chhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-eEEeeecccCcc
Confidence            99999999999986544  4456777789999999999999999998877655443221 123444455443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7e-32  Score=256.91  Aligned_cols=229  Identities=27%  Similarity=0.483  Sum_probs=211.1

Q ss_pred             eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~  492 (656)
                      ..++++||.+.|+++.|++|+++++++|.||.+.|||.-+...+..++-...-|..++|+|.|+++|+|+-|....||++
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            44789999999999999999999999999999999999998888888888889999999999999999999999999999


Q ss_pred             CCC------ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 006220          493 DRI------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASG  565 (656)
Q Consensus       493 ~~~------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~L~s~  565 (656)
                      .+.      ...+.+.+|.+.+.|+.|-+ .+.|+|||.|.++.+||+.+|+.+..|.+|.+.|.++.++| +++.+++|
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg  205 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG  205 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence            855      35577889999999999987 56899999999999999999999999999999999999999 99999999


Q ss_pred             ECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCC
Q 006220          566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK  645 (656)
Q Consensus       566 ~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~  645 (656)
                      +.|+..++||++.+.+++.|.+|...|+++.|.|+|.-+++|+.|+++++||++....+....             .+..
T Consensus       206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-------------~~~~  272 (343)
T KOG0286|consen  206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-------------HDSI  272 (343)
T ss_pred             ccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-------------cCcc
Confidence            999999999999999999999999999999999999999999999999999999977664332             4455


Q ss_pred             CCCeEEEEEc
Q 006220          646 STPVYSLQVL  655 (656)
Q Consensus       646 ~~pv~sv~Ft  655 (656)
                      ..+|.+|+|+
T Consensus       273 ~~gitSv~FS  282 (343)
T KOG0286|consen  273 ICGITSVAFS  282 (343)
T ss_pred             cCCceeEEEc
Confidence            6778888886

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-31  Score=282.22  Aligned_cols=262  Identities=26%  Similarity=0.479  Sum_probs=229.8

Q ss_pred             CCceeEEE-EeeCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE
Q 006220          339 LPSVSFYT-FINTHNGLNCASISQDGSLVAGGFSD-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL  416 (656)
Q Consensus       339 ~ps~~~~~-~~~~~~~V~~l~fs~dg~~La~g~~d-g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (656)
                      +|...+.. +--....|..++|+..|.+||.|+.. |.+-||+++.                            ...+..
T Consensus       294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs----------------------------EsYVlK  345 (893)
T KOG0291|consen  294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS----------------------------ESYVLK  345 (893)
T ss_pred             cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec----------------------------cceeee
Confidence            45444433 33345789999999999999999765 8999999985                            234556


Q ss_pred             eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (656)
Q Consensus       417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~  496 (656)
                      .++|...+++++++|||+++++|+.||.|+|||...+-|..++..|++.|+.++|+..|+.+++.|-||+|+.||+....
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr  425 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR  425 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEecCC-CCCeeEEEEcCCCCEEEEEECCC-cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          497 PLRIMAGH-LSDVDCVRWHINCNYIATGSSDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (656)
Q Consensus       497 ~~~~~~~~-~~~V~~v~~~p~~~~l~tgs~dg-~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw  574 (656)
                      ..+++... .-...|++..|.|..+.+|+.|. .|.+|++++|+.+-.+.||.+||.+++|+|+|..|++++.|.+|++|
T Consensus       426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW  505 (893)
T ss_pred             eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence            99988743 34578999999999999999887 59999999999999999999999999999999999999999999999


Q ss_pred             eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       575 D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      |+-.......-..+...+..++|+|+|+.|++++.||.|.+||+..+.....++
T Consensus       506 ~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id  559 (893)
T KOG0291|consen  506 DIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID  559 (893)
T ss_pred             EeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence            986553333333566789999999999999999999999999999887765443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.5e-32  Score=293.85  Aligned_cols=264  Identities=30%  Similarity=0.571  Sum_probs=233.8

Q ss_pred             ccceecCCCCCCc-eeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220          329 RNRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (656)
Q Consensus       329 ~~~v~l~~~~~ps-~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (656)
                      .+.+++|...... .....+.+|...|++++|+||++++++|+.|++|+|||+..                         
T Consensus       180 ~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~-------------------------  234 (456)
T KOG0266|consen  180 DGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD-------------------------  234 (456)
T ss_pred             CCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC-------------------------
Confidence            3445555441111 23444568889999999999999999999999999999842                         


Q ss_pred             CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcE
Q 006220          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (656)
Q Consensus       408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i  487 (656)
                        .....+.+.+|...|++++|+|+++++++|+.|++|++||+++++++..+.+|..+|.+++|++++++|++++.|+.|
T Consensus       235 --~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i  312 (456)
T KOG0266|consen  235 --DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTI  312 (456)
T ss_pred             --CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccE
Confidence              135678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCc--eeEEecCCCCC--eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC---eEEEEEcCCCC
Q 006220          488 RIWSMDRIQ--PLRIMAGHLSD--VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM---ILSLAMSPDGR  560 (656)
Q Consensus       488 ~lwd~~~~~--~~~~~~~~~~~--V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~---i~~l~~sp~g~  560 (656)
                      ++||+.++.  +...+.++...  ++++.|+|++.++++++.|+.+++||++.+.++..+.+|...   +.+...++.|.
T Consensus       313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (456)
T KOG0266|consen  313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK  392 (456)
T ss_pred             EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence            999999998  56777776666  999999999999999999999999999999999999999874   44455678999


Q ss_pred             EEEEEECCCcEEEEeCCCCeeeEeeeCC-CccEEEEEEcCCCCEEEEEE--CCCcEEEEeCC
Q 006220          561 YMASGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGS--ADCTVKLWDVT  619 (656)
Q Consensus       561 ~L~s~~~dg~I~iwD~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~sgs--~Dg~I~iWd~~  619 (656)
                      ++++|+.|+.|.+||+.++..+..+.+| ...+..++|++...++++++  .|+.+++|...
T Consensus       393 ~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  393 LIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            9999999999999999999999999999 89999999999999999998  78999999764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.5e-32  Score=286.82  Aligned_cols=259  Identities=27%  Similarity=0.521  Sum_probs=229.4

Q ss_pred             CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec
Q 006220          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (656)
Q Consensus       340 ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  419 (656)
                      |...+..+.+|...|.+++...+|-+||+|+.|.++++|.++....                        ....+....+
T Consensus       354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~------------------------~~~~~a~~~g  409 (775)
T KOG0319|consen  354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS------------------------KSLCVAQANG  409 (775)
T ss_pred             CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc------------------------hhhhhhhhcc
Confidence            3333446778999999999777889999999999999999853211                        1224455678


Q ss_pred             CccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCCce-----e----EEeeCCCccEEEEEEecCCCEEEEEECCCcEEE
Q 006220          420 HSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNAN-----L----VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (656)
Q Consensus       420 h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~-----~----~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~l  489 (656)
                      |++.|.+++++..+ .+|+++|.|+++++|++...+.     .    .....|...|+|++++|+...|+|||.|+++++
T Consensus       410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi  489 (775)
T KOG0319|consen  410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI  489 (775)
T ss_pred             cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence            99999999997755 4899999999999999875211     1    123469999999999999999999999999999


Q ss_pred             EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 006220          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (656)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg  569 (656)
                      |+++......++.||...|.||.|+|+.+.++|+|.|++|+||.+.+..|+.+|.||...|..+.|-.+|..|++++.||
T Consensus       490 W~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG  569 (775)
T KOG0319|consen  490 WDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG  569 (775)
T ss_pred             ecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       570 ~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      -|++|++.++.|+.++..|...||+++.++.+.+++||+.||.|.+|.=.+..
T Consensus       570 liKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~  622 (775)
T KOG0319|consen  570 LIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE  622 (775)
T ss_pred             cEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence            99999999999999999999999999999999999999999999999765543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.3e-31  Score=279.47  Aligned_cols=255  Identities=26%  Similarity=0.450  Sum_probs=222.4

Q ss_pred             EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      +...+|...++|+++||||+++|+|+.||.|+|||...                            +....++..|++.|
T Consensus       344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S----------------------------gfC~vTFteHts~V  395 (893)
T KOG0291|consen  344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS----------------------------GFCFVTFTEHTSGV  395 (893)
T ss_pred             eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC----------------------------ceEEEEeccCCCce
Confidence            35568889999999999999999999999999999875                            45678899999999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC-CccEEEEEEecCCCEEEEEECCC-cEEEEECCCCceeEEec
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDR-TARIWSMDRIQPLRIMA  502 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~sgs~Dg-~i~lwd~~~~~~~~~~~  502 (656)
                      +.+.|+..++.++++|-||+|+.||+....+.+++... .-...|++..|.|..++.|+.|. .|++|++++++.+.++.
T Consensus       396 t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs  475 (893)
T KOG0291|consen  396 TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS  475 (893)
T ss_pred             EEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc
Confidence            99999999999999999999999999999998888754 33467888999999999999876 69999999999999999


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      ||.++|.+++|+|.+..|++||.|.+||+||+-.......-..+...+..++|+|+|+.|++++.||.|.+||...+..+
T Consensus       476 GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~  555 (893)
T KOG0291|consen  476 GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV  555 (893)
T ss_pred             CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence            99999999999999999999999999999999755333333346778999999999999999999999999999876655


Q ss_pred             Eeee--------------------CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          583 TPLM--------------------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       583 ~~~~--------------------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      ..+.                    ......+++++|+||..+++||..+.|++|++.++-.+.+.
T Consensus       556 ~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf  620 (893)
T KOG0291|consen  556 GSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKF  620 (893)
T ss_pred             ccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence            3332                    12357899999999999999999999999999987665443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.4e-32  Score=267.37  Aligned_cols=258  Identities=24%  Similarity=0.433  Sum_probs=212.0

Q ss_pred             CCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220          338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (656)
Q Consensus       338 ~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  417 (656)
                      ..|+.....+..|.+.|+-+.||++|+|||+++.|.+..||.+...                         ...+...++
T Consensus       211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-------------------------~~~kl~~tl  265 (519)
T KOG0293|consen  211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-------------------------VHFKLKKTL  265 (519)
T ss_pred             cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-------------------------cceeeeeee
Confidence            4566666678899999999999999999999999999999998641                         224567789


Q ss_pred             ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (656)
Q Consensus       418 ~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~  496 (656)
                      .+|..+|..+.||||.++|++|+.|..+++||+.++.+...+.. +...+.+++|.|||..|++|+.|+++..||++...
T Consensus       266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~  345 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI  345 (519)
T ss_pred             ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch
Confidence            99999999999999999999999999999999999999887763 46789999999999999999999999999998643


Q ss_pred             eeEEecC-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee------------------------------------
Q 006220          497 PLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC------------------------------------  539 (656)
Q Consensus       497 ~~~~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~------------------------------------  539 (656)
                       .....+ ....|.+++..++|+++++.+.|..|++++..+...                                    
T Consensus       346 -~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl  424 (519)
T KOG0293|consen  346 -LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDL  424 (519)
T ss_pred             -hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeec
Confidence             222332 235689999999999999888888888887643322                                    


Q ss_pred             -----EEEEecCCCC--eEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcC-CCCEEEEEECC
Q 006220          540 -----VRIFIGHRSM--ILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC-EGSLLASGSAD  610 (656)
Q Consensus       540 -----~~~~~~h~~~--i~~l~~sp-~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~sgs~D  610 (656)
                           ++.+.||...  +..-+|-- +..++++|++|+.|+||+..+|+++..+.||...|++++|+| +-.++|++|.|
T Consensus       425 ~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD  504 (519)
T KOG0293|consen  425 EENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD  504 (519)
T ss_pred             chhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC
Confidence                 2223344432  22223332 346799999999999999999999999999999999999999 55689999999


Q ss_pred             CcEEEEeCCCC
Q 006220          611 CTVKLWDVTTS  621 (656)
Q Consensus       611 g~I~iWd~~~~  621 (656)
                      |+|+||.....
T Consensus       505 gtIRIWg~~~~  515 (519)
T KOG0293|consen  505 GTIRIWGPSDN  515 (519)
T ss_pred             CeEEEecCCcc
Confidence            99999987653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.8e-31  Score=265.46  Aligned_cols=259  Identities=25%  Similarity=0.463  Sum_probs=231.6

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ..-+++|+.  +.-...++..|.++|.++.|+.+|+||++|+.|+++.+||...                          
T Consensus       256 ~G~~riw~~--~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~--------------------------  307 (524)
T KOG0273|consen  256 DGEARIWNK--DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT--------------------------  307 (524)
T ss_pred             CcEEEEEec--CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC--------------------------
Confidence            344556643  2333446889999999999999999999999999999999764                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                        +.....+.-|+.+-..|.|-. ...+++++.||.|+|+.+....++.++.+|.++|.++.|+|.|..|+++|.|++++
T Consensus       308 --g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlk  384 (524)
T KOG0273|consen  308 --GTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLK  384 (524)
T ss_pred             --ceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeE
Confidence              334555667888878889974 45689999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCCC---------CEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINC---------NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG  559 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~---------~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g  559 (656)
                      ||+.........+.+|...|..+.|+|.|         ..+++++.|++|++||+..+.++..|..|..+|.+++|||+|
T Consensus       385 iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g  464 (524)
T KOG0273|consen  385 IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG  464 (524)
T ss_pred             eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC
Confidence            99999999999999999999999999865         468999999999999999999999999999999999999999


Q ss_pred             CEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          560 RYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       560 ~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      +++|+|+.||.|.+|++++++.++.+.+. +.|..++|+.+|..|..+-.||.+++-|++
T Consensus       465 ~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  465 RYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             cEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            99999999999999999999999988654 569999999999999999999999999875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.8e-30  Score=243.77  Aligned_cols=247  Identities=24%  Similarity=0.466  Sum_probs=214.0

Q ss_pred             EEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          344 FYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      ..++.+|.+.+..++|+|- |..||+|+.|..|+||+......                        -.-....-.+|..
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s------------------------~~ck~vld~~hkr   62 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS------------------------WTCKTVLDDGHKR   62 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc------------------------EEEEEeccccchh
Confidence            4567788889999999998 89999999999999999873100                        0111122347999


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEecc--CCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC---Cce
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR---IQP  497 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~---~~~  497 (656)
                      .|.+++|+|.|++|++||.|.++.||.-.  ..+++..+.||...|.|++|+++|++||+|+.|+.+-+|.++.   ..+
T Consensus        63 sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec  142 (312)
T KOG0645|consen   63 SVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC  142 (312)
T ss_pred             eeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence            99999999999999999999999999865  3477889999999999999999999999999999999999874   457


Q ss_pred             eEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC---CCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (656)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~---~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw  574 (656)
                      ...+.+|..+|..+.|||....|+++|.|.+|++|+-.   ...++.++.+|...|.+++|++.|..|++++.|++|+||
T Consensus       143 ~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw  222 (312)
T KOG0645|consen  143 IAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIW  222 (312)
T ss_pred             EeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEee
Confidence            78889999999999999999999999999999999876   347899999999999999999999999999999999999


Q ss_pred             eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       575 D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      -..+.-.    ..|+..++.+.|.  ...|+|++.|+.|+++.-..
T Consensus       223 ~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  223 RLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             eeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecC
Confidence            8653211    2477899999998  55899999999999998774

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.1e-30  Score=261.50  Aligned_cols=260  Identities=37%  Similarity=0.642  Sum_probs=232.9

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+.+|+..... ....+..|...+.++.|+++++++++++.+|.|++|++...                         
T Consensus        30 ~g~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-------------------------   83 (289)
T cd00200          30 DGTIKVWDLETGE-LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-------------------------   83 (289)
T ss_pred             CcEEEEEEeeCCC-cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-------------------------
Confidence            4466777654332 34456677888999999999999999999999999998741                         


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                         .....+..|...|.++.|++++.++++++.||.|++|++.++.....+..|...|.+++|+|++.++++++.|+.++
T Consensus        84 ---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~  160 (289)
T cd00200          84 ---ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK  160 (289)
T ss_pred             ---cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence               23344567888999999999988899888899999999998888888888999999999999999998888899999


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      +||+++.+.+..+..|...+.+++|+|+++.+++++.++.|++||+++++.+..+..|...+.+++|+|++.++++++.|
T Consensus       161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  240 (289)
T cd00200         161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED  240 (289)
T ss_pred             EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence            99999988999998998899999999999999999999999999999999999888899999999999999999998889


Q ss_pred             CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      |.|++||+.+++.+..+..|...|.+++|++++.+|++++.||.|++|+
T Consensus       241 ~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999999999999999999999999999999999999999999999996

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-31  Score=285.63  Aligned_cols=271  Identities=23%  Similarity=0.352  Sum_probs=214.7

Q ss_pred             eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccC------------------CCC-----CC------CC
Q 006220          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL------------------QGE-----ND------TT  399 (656)
Q Consensus       349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~------------------~~~-----~~------~~  399 (656)
                      .|.+.|+|+.||+||+|||+|+.||.|+||.+............                  ...     ..      ..
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            68899999999999999999999999999998762211100000                  000     00      00


Q ss_pred             C---CccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CC
Q 006220          400 P---REDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QG  475 (656)
Q Consensus       400 ~---~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~  475 (656)
                      .   ......+.-....+..+.||.+.|..++||. +.+|+++|.|.|||||++....|+.+|. |..-|+||+|+| |.
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD  422 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence            0   0000011112345667899999999999995 5789999999999999999999999987 999999999999 88


Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec--C------C
Q 006220          476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--H------R  547 (656)
Q Consensus       476 ~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~--h------~  547 (656)
                      +||++|+-||.++||++...+.+.....+ .-|++++|.|+|++.++|+.+|.+++|+....+.+..+.-  |      .
T Consensus       423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG  501 (712)
T ss_pred             CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence            99999999999999999887766655544 7899999999999999999999999999988777654431  1      1


Q ss_pred             CCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeeEeeeCCC--ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          548 SMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRCVTPLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       548 ~~i~~l~~sp~g-~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~--~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ..|+.+.|.|.. ..+++.+.|..|+|+|.+...++..++|+.  ..-....|+.||++|++++.|..|+||++....
T Consensus       502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            279999999843 357777889999999999999999998765  334567899999999999999999999985543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.2e-32  Score=266.81  Aligned_cols=260  Identities=27%  Similarity=0.563  Sum_probs=227.1

Q ss_pred             HHHHhc-cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCc
Q 006220          324 ILEDLR-NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE  402 (656)
Q Consensus       324 ~~~~~~-~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~  402 (656)
                      ++..++ +.+++|+.+. ..|.+.+.+|.+.|.|+.|.  .+.+++|++|++|+|||+++                    
T Consensus       210 iVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t--------------------  266 (499)
T KOG0281|consen  210 IVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT--------------------  266 (499)
T ss_pred             hhcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC--------------------
Confidence            344554 4788998643 45667889999999999995  55999999999999999986                    


Q ss_pred             cccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce---eEEeeCCCccEEEEEEecCCCEEE
Q 006220          403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQGHYFA  479 (656)
Q Consensus       403 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~~~~l~  479 (656)
                              +....++.+|...|..+.|+  +.+++++|.|.+|.+||+.....   ...+.||...|..+.|+  ..|++
T Consensus       267 --------ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIV  334 (499)
T KOG0281|consen  267 --------GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIV  334 (499)
T ss_pred             --------CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEE
Confidence                    34566788999999999998  67999999999999999986643   34567999999999996  55999


Q ss_pred             EEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC
Q 006220          480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG  559 (656)
Q Consensus       480 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g  559 (656)
                      ++|.|++|++|++.+...++++.+|...|.|+.+  +++++++|++|.+||+||+..|.+++.+.||..-|.|+.|.  .
T Consensus       335 sASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~  410 (499)
T KOG0281|consen  335 SASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--N  410 (499)
T ss_pred             EecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--C
Confidence            9999999999999999999999999999999986  68899999999999999999999999999999999999996  6


Q ss_pred             CEEEEEECCCcEEEEeCCCCe---------eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          560 RYMASGDEDGTIMMWDLASGR---------CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       560 ~~L~s~~~dg~I~iwD~~~~~---------~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      +.+++|+.||+|++||+..+.         |+..+..|++.|..+.|.  ...+++++.|.+|-|||+..+...
T Consensus       411 krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  411 KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence            789999999999999997653         445566799999999995  557999999999999999887654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=7.2e-30  Score=298.56  Aligned_cols=255  Identities=18%  Similarity=0.357  Sum_probs=217.0

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      +.+|.+.|++++|+|+|++||+|+.|+.|+||++.......                    .........+ .+...|.+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~--------------------~~~~~~~~~~-~~~~~v~~  537 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG--------------------RDIHYPVVEL-ASRSKLSG  537 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc--------------------cccccceEEe-cccCceee
Confidence            34578889999999999999999999999999975310000                    0000111222 23468999


Q ss_pred             EEEccC-CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220          427 ASFSPL-GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (656)
Q Consensus       427 l~~spd-~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  504 (656)
                      ++|++. +.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||++++..+..+..+
T Consensus       538 l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~  617 (793)
T PLN00181        538 ICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK  617 (793)
T ss_pred             EEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC
Confidence            999874 67999999999999999999999999999999999999997 7899999999999999999998888888755


Q ss_pred             CCCeeEEEEc-CCCCEEEEEECCCcEEEEeCCCCe-eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC----
Q 006220          505 LSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----  578 (656)
Q Consensus       505 ~~~V~~v~~~-p~~~~l~tgs~dg~V~iwd~~~~~-~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~----  578 (656)
                       ..|.++.|+ +++.+|++|+.||.|++||++++. .+..+.+|...|+++.|. ++.+|++++.|+.|++||+..    
T Consensus       618 -~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~  695 (793)
T PLN00181        618 -ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG  695 (793)
T ss_pred             -CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence             679999995 579999999999999999998875 567788999999999997 678999999999999999974    


Q ss_pred             --CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          579 --GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       579 --~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                        +.++..+.+|...+..++|++++.+|++|+.||.|++|+.......
T Consensus       696 ~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~  743 (793)
T PLN00181        696 INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV  743 (793)
T ss_pred             cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence              3577888999999999999999999999999999999998766543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.98  E-value=4.2e-30  Score=261.69  Aligned_cols=255  Identities=27%  Similarity=0.404  Sum_probs=210.1

Q ss_pred             EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE---eecC
Q 006220          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL---YQGH  420 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~h  420 (656)
                      ..++..|..-|+|+.|||||.++|+.+.||.|.+||=.++.                            .+..   -.+|
T Consensus       183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge----------------------------~vg~l~~~~aH  234 (603)
T KOG0318|consen  183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE----------------------------KVGELEDSDAH  234 (603)
T ss_pred             eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc----------------------------EEEEecCCCCc
Confidence            34566777889999999999999999999999999955421                            2222   3379


Q ss_pred             ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE-------------------------------------------
Q 006220          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-------------------------------------------  457 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~-------------------------------------------  457 (656)
                      .+.|++++|+||+..++++|.|.+++|||+.+..++.                                           
T Consensus       235 kGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~  314 (603)
T KOG0318|consen  235 KGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLK  314 (603)
T ss_pred             cccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhh
Confidence            9999999999999999999999999999987543322                                           


Q ss_pred             EeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee-------------------------------EE------
Q 006220          458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-------------------------------RI------  500 (656)
Q Consensus       458 ~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~-------------------------------~~------  500 (656)
                      .+.||...|+++..+|++.+|++|+.||.|.-|+..++..-                               +.      
T Consensus       315 ~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~  394 (603)
T KOG0318|consen  315 VISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDN  394 (603)
T ss_pred             eecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccC
Confidence            24689999999999999999999999999999997533200                               00      


Q ss_pred             ------------------------------------ecCC--------CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          501 ------------------------------------MAGH--------LSDVDCVRWHINCNYIATGSSDKTVRLWDVSS  536 (656)
Q Consensus       501 ------------------------------------~~~~--------~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~  536 (656)
                                                          +..+        .-...+++++|++..+++|+.|+.|++|.+..
T Consensus       395 ~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g  474 (603)
T KOG0318|consen  395 GYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG  474 (603)
T ss_pred             cccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC
Confidence                                                0000        01235789999999999999999999999987


Q ss_pred             Cee--EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE-eeeCCCccEEEEEEcCCCCEEEEEECCCcE
Q 006220          537 GEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT-PLMGHTSCVWTLAYSCEGSLLASGSADCTV  613 (656)
Q Consensus       537 ~~~--~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I  613 (656)
                      +..  ......|.++|+++++|||+.|||+|...+.+.+||..+.+... .+.-|+..|.+++|+|++.++|+|+-|.+|
T Consensus       475 ~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V  554 (603)
T KOG0318|consen  475 DELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV  554 (603)
T ss_pred             CcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence            653  33566799999999999999999999999999999998887633 344599999999999999999999999999


Q ss_pred             EEEeCCCCCceee
Q 006220          614 KLWDVTTSTKVLK  626 (656)
Q Consensus       614 ~iWd~~~~~~~~~  626 (656)
                      .||++..+.....
T Consensus       555 iiysv~kP~~~i~  567 (603)
T KOG0318|consen  555 IIYSVKKPAKHII  567 (603)
T ss_pred             EEEEccChhhheE
Confidence            9999998776533

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=2.4e-32  Score=262.45  Aligned_cols=250  Identities=26%  Similarity=0.382  Sum_probs=221.4

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      ++..+.+-|..|||||+||++|+.||.|.||+..+++.....                    ..+.-..+.-+..+|.|+
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL--------------------kYQAqd~fMMmd~aVlci  269 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL--------------------KYQAQDNFMMMDDAVLCI  269 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhh--------------------hhhhhcceeecccceEEE
Confidence            455667899999999999999999999999998864432211                    111223355688999999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeccCCceeEEee-CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCC
Q 006220          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS  506 (656)
Q Consensus       428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~  506 (656)
                      +||.|...|++|+.||.|++|.+.+|.|+..+. .|+..|+|+.|+.|+..+++++.|.++++.-+.+++++..+.||.+
T Consensus       270 ~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS  349 (508)
T KOG0275|consen  270 SFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS  349 (508)
T ss_pred             eecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc
Confidence            999999999999999999999999999999987 7999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec-----------------------------------------
Q 006220          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-----------------------------------------  545 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~-----------------------------------------  545 (656)
                      .|+...|.++|+++++++.||+|++|+.++++|+.+|+.                                         
T Consensus       350 yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs  429 (508)
T KOG0275|consen  350 YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS  429 (508)
T ss_pred             cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee
Confidence            999999999999999999999999999988777655431                                         


Q ss_pred             ------CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          546 ------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       546 ------h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                            ..+...+.+.||.|.++++.++|+.++.|...+|+.-.++..|...|..++-+|..+.+++-+.||.+++|.
T Consensus       430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence                  123345677899999999999999999999999999999999999999999999999999999999999995

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.98  E-value=1e-29  Score=248.91  Aligned_cols=246  Identities=20%  Similarity=0.341  Sum_probs=225.3

Q ss_pred             EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      .+|..|...|.+++.+|+.+++|+|+.|..-.||++.+                            +.....+.+|...|
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~----------------------------ge~~~eltgHKDSV  109 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST----------------------------GEFAGELTGHKDSV  109 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccC----------------------------CcceeEecCCCCce
Confidence            47889999999999999999999999999999999875                            22456688999999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  504 (656)
                      +++.||.+|.+|++|+.+|.|+||...++.....+......|.=+.|+|.++.|+.|+.||.+-.|.+.+......+.||
T Consensus       110 t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh  189 (399)
T KOG0296|consen  110 TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH  189 (399)
T ss_pred             EEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC
Confidence            99999999999999999999999999999888887655667777999999999999999999999999998889999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe----------------------------------------
Q 006220          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI----------------------------------------  544 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~----------------------------------------  544 (656)
                      ..+++|-.|.|+|+.+++|..||+|++||..+++++..+.                                        
T Consensus       190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~  269 (399)
T KOG0296|consen  190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN  269 (399)
T ss_pred             CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence            9999999999999999999999999999998887654322                                        


Q ss_pred             -------------------------------------------------------cCCCCeEEEEEcCCCCEEEEEECCC
Q 006220          545 -------------------------------------------------------GHRSMILSLAMSPDGRYMASGDEDG  569 (656)
Q Consensus       545 -------------------------------------------------------~h~~~i~~l~~sp~g~~L~s~~~dg  569 (656)
                                                                             .|..+|+.+.|-+ ..+|++++.+|
T Consensus       270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g  348 (399)
T KOG0296|consen  270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANG  348 (399)
T ss_pred             ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCc
Confidence                                                                   3667788888988 68999999999


Q ss_pred             cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       570 ~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      .|+.||.++|+++..+.+|...|.+++++|+.++++|+|.|++.+|+++.
T Consensus       349 ~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  349 KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999999999999999999999999999999999999999874

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=5.1e-31  Score=246.48  Aligned_cols=261  Identities=26%  Similarity=0.435  Sum_probs=225.0

Q ss_pred             ceecCCC-CCCceeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          331 RVHLSSA-ALPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       331 ~v~l~~~-~~ps~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ++.+-+. ..+.+....-....+++..++||++ .+.+++++.||+++|||+...                         
T Consensus        39 ~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-------------------------   93 (311)
T KOG0277|consen   39 RLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-------------------------   93 (311)
T ss_pred             eEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC-------------------------
Confidence            4454444 3567777777888899999999986 667888899999999996531                         


Q ss_pred             CCceeeEEeecCccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCc
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRT  486 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~  486 (656)
                        ..++..++.|...|+++.|++.. +.++++|.|++|++|+......+.++.+|...|...+|+| .++.|+++|.|++
T Consensus        94 --s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   94 --SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             --CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence              23566788999999999999865 4678889999999999999999999999999999999999 6789999999999


Q ss_pred             EEEEECCCCceeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCC-CEEE
Q 006220          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDG-RYMA  563 (656)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g-~~L~  563 (656)
                      +++||++..-....+..|...+.|+.|+. +.+.++||+.|+.||.||+++- .++..+.+|.-.|..++|||.. ..|+
T Consensus       172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa  251 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA  251 (311)
T ss_pred             EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence            99999987655555888999999999996 7788999999999999999974 5678889999999999999964 6899


Q ss_pred             EEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcC-CCCEEEEEECCCcEEEEeC
Q 006220          564 SGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       564 s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~  618 (656)
                      +++.|-+++|||...+ .++.+...|+..|..+.||+ ++.++|+++.|+.++||+-
T Consensus       252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9999999999998744 45666778999999999998 5779999999999999984

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.7e-30  Score=268.81  Aligned_cols=249  Identities=23%  Similarity=0.414  Sum_probs=229.6

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      +..+...|.|+.|+|...+++++-.+|.|.||+.++.                            ..+..+.-..-||.+
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq----------------------------tmVksfeV~~~PvRa   60 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ----------------------------TMVKSFEVSEVPVRA   60 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccc----------------------------eeeeeeeecccchhh
Confidence            4557788999999999999999999999999998862                            233445556678999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecCCC
Q 006220          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHL  505 (656)
Q Consensus       427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~~~  505 (656)
                      ..|-+-.+++++|+.|..|++|+..+++.+..+..|..-|.+++.+|...+++++|.|-+|++||.+.. .+.+++.||.
T Consensus        61 ~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~  140 (794)
T KOG0276|consen   61 AKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE  140 (794)
T ss_pred             heeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999865 5778999999


Q ss_pred             CCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC--CEEEEEECCCcEEEEeCCCCeee
Q 006220          506 SDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG--RYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       506 ~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g--~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      .-|.+++|+| +.+.+++++-|++|++|.+.+..+..++.+|...|+|+.+-+-|  .+|++|++|..|+|||..+..|+
T Consensus       141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV  220 (794)
T KOG0276|consen  141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV  220 (794)
T ss_pred             eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence            9999999999 56899999999999999999999999999999999999999855  59999999999999999999999


Q ss_pred             EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       583 ~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      .++.||...|..+.|+|.-.+++||+.||+++||.-.+-+.
T Consensus       221 ~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  221 QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence            99999999999999999999999999999999999877543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.6e-30  Score=274.41  Aligned_cols=254  Identities=24%  Similarity=0.445  Sum_probs=223.9

Q ss_pred             EEeeCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          346 TFINTHNGLNCASI-SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       346 ~~~~~~~~V~~l~f-s~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      .+.+.++.|..++| .|+.++||+++..+.+|+|++.+                             ..+..+.||+..|
T Consensus       318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~-----------------------------~~c~ii~GH~e~v  368 (775)
T KOG0319|consen  318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT-----------------------------SYCQIIPGHTEAV  368 (775)
T ss_pred             hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCC-----------------------------CceEEEeCchhhe
Confidence            45677788998887 57889999999999999998764                             2344788999999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCCc----eeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCcee-
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPL-  498 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~~-  498 (656)
                      .++....+|.+|+|||.|.++++|.++.+.    ++....+|...|.+++++..+ .+|+++|.|+++++|++...+.. 
T Consensus       369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~  448 (775)
T KOG0319|consen  369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA  448 (775)
T ss_pred             eeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence            999966678899999999999999885443    345678899999999997744 57899999999999999762211 


Q ss_pred             --E------EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCc
Q 006220          499 --R------IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (656)
Q Consensus       499 --~------~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~  570 (656)
                        .      ....|..+|+|++.+|+...+||||.|++.+||++.++....++.||+..|.|+.|+|..+.++|++.|++
T Consensus       449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T  528 (775)
T KOG0319|consen  449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT  528 (775)
T ss_pred             ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce
Confidence              1      23479999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       571 I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      |+||.+.+..|++++.||+..|..+.|-.+|+.|+|+++||-|++|++.++++.....
T Consensus       529 vKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD  586 (775)
T KOG0319|consen  529 VKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD  586 (775)
T ss_pred             EEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence            9999999999999999999999999999999999999999999999999988765443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2e-29  Score=238.05  Aligned_cols=260  Identities=19%  Similarity=0.325  Sum_probs=218.9

Q ss_pred             hccceecCCCC-CCceeEEEEe--eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220          328 LRNRVHLSSAA-LPSVSFYTFI--NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (656)
Q Consensus       328 ~~~~v~l~~~~-~ps~~~~~~~--~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (656)
                      -.+++++|+.. ..+..+.+.+  +|...|.+++|+|.|++||+|+-|+++.||.-..                      
T Consensus        35 ~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~----------------------   92 (312)
T KOG0645|consen   35 TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED----------------------   92 (312)
T ss_pred             CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC----------------------
Confidence            35678888766 3345554443  5778899999999999999999999999998542                      


Q ss_pred             cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC---ceeEEeeCCCccEEEEEEecCCCEEEEE
Q 006220          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASS  481 (656)
Q Consensus       405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~sg  481 (656)
                          +.......+.||...|.|++|+++|++|++|+.|.+|-||.+..+   .+...++.|...|..+.|+|....|+++
T Consensus        93 ----~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~  168 (312)
T KOG0645|consen   93 ----GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC  168 (312)
T ss_pred             ----CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence                234567889999999999999999999999999999999998743   5677889999999999999999999999


Q ss_pred             ECCCcEEEEECC---CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC
Q 006220          482 SHDRTARIWSMD---RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD  558 (656)
Q Consensus       482 s~Dg~i~lwd~~---~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~  558 (656)
                      |.|.+|++|+-.   .-.++..+.+|.+.|.+++|+++|..|++++.|++|+||-..+.-.    ..|+.++..+.|.  
T Consensus       169 SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--  242 (312)
T KOG0645|consen  169 SYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--  242 (312)
T ss_pred             ccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--
Confidence            999999999866   3357889999999999999999999999999999999998663211    2377899999998  


Q ss_pred             CCEEEEEECCCcEEEEeCCCC------eeeE-eeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCC
Q 006220          559 GRYMASGDEDGTIMMWDLASG------RCVT-PLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       559 g~~L~s~~~dg~I~iwD~~~~------~~~~-~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~  619 (656)
                      ...|++++.|+.|++|.-..+      +.+. .-..|...|+++.|+|. .+.|++|+.||.|++|.+.
T Consensus       243 ~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  243 NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            568999999999999976542      1111 23468889999999994 7899999999999999874

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.7e-29  Score=272.46  Aligned_cols=287  Identities=17%  Similarity=0.263  Sum_probs=218.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ..|+....++|+..+++++.+.....|+......  ......             .+........+.+|.++|++++|+|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~--v~~~~~-------------~G~~~~~~~~l~GH~~~V~~v~fsP   85 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA--VLKHTD-------------YGKLASNPPILLGQEGPIIDVAFNP   85 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceE--Eeeccc-------------cccCCCCCceEeCCCCCEEEEEEcC
Confidence            3566777788877778787888888898654221  100000             0000112234779999999999999


Q ss_pred             -CCCEEEEEeCCCeEEEEeccCC-------ceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEec
Q 006220          432 -LGDFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       432 -d~~~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~~~~~~  502 (656)
                       ++++|++|+.||+|++||+.++       ..+..+.+|...|.+++|+|++ ++|++|+.|++|++||+++++.+..+.
T Consensus        86 ~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~  165 (493)
T PTZ00421         86 FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK  165 (493)
T ss_pred             CCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence             7889999999999999999764       3467788999999999999975 799999999999999999999999999


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC-eEEEEEcCCCCEEEEEE----CCCcEEEEeCC
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGD----EDGTIMMWDLA  577 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~-i~~l~~sp~g~~L~s~~----~dg~I~iwD~~  577 (656)
                      +|...|.+++|+|++.+|++|+.|++|++||+++++.+..+.+|.+. +..+.|.+++..+++++    .|+.|++||++
T Consensus       166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence            99999999999999999999999999999999999999999999765 45678999888877654    47899999998


Q ss_pred             CCe-eeEeeeCCC-ccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEE
Q 006220          578 SGR-CVTPLMGHT-SCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQV  654 (656)
Q Consensus       578 ~~~-~~~~~~~h~-~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~F  654 (656)
                      +.. ++.....+. ..+....|++++++|++|+ .||.|++||+.++......... .......+...|...--|..+.+
T Consensus       246 ~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~~~dv~~~Ei  324 (493)
T PTZ00421        246 KMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKWSLDTRKCEI  324 (493)
T ss_pred             CCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEecccccccccceee
Confidence            754 343333333 4566678999999999888 5999999999987755433221 12223344444544444444443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=1.2e-30  Score=254.23  Aligned_cols=216  Identities=27%  Similarity=0.519  Sum_probs=207.1

Q ss_pred             ceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEE
Q 006220          411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW  490 (656)
Q Consensus       411 ~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lw  490 (656)
                      .+..+.+.+|.+.|.|+++.|-+.+|++|+.|++|+|||+.+++...++.||-..|..+++|+-..|+++++.|+.|+.|
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCc
Q 006220          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (656)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~  570 (656)
                      |++..+.++.+.||.+.|.|++.||.-..|++|+.|.++|+||+++...+..+.||..+|.++.+.|-...+++|+.|++
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t  300 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST  300 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             EEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       571 I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      |++||++.|+....+..|...|.+++.+|....+|+++.| .|+-|++..+......
T Consensus       301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl  356 (460)
T KOG0285|consen  301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL  356 (460)
T ss_pred             EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc
Confidence            9999999999999999999999999999999999999988 6999999988776653

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=2.1e-29  Score=234.92  Aligned_cols=244  Identities=23%  Similarity=0.410  Sum_probs=211.0

Q ss_pred             HHhccceecCCCCCCce-eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220          326 EDLRNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (656)
Q Consensus       326 ~~~~~~v~l~~~~~ps~-~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (656)
                      ......+++++....+. +..+|-+|.+.|+++.|..||+++.+|+.||+++|||+...                     
T Consensus        57 aa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~---------------------  115 (311)
T KOG0315|consen   57 AAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL---------------------  115 (311)
T ss_pred             hccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc---------------------
Confidence            34445667766544433 67788999999999999999999999999999999999851                     


Q ss_pred             cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe-eCCCccEEEEEEecCCCEEEEEEC
Q 006220          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPVWDVQFNPQGHYFASSSH  483 (656)
Q Consensus       405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~sgs~  483 (656)
                              .+.....|.++|+++..+|+...|++|..+|.|++||+....+...+ .....+|.++...|+|.+++.+..
T Consensus       116 --------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn  187 (311)
T KOG0315|consen  116 --------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN  187 (311)
T ss_pred             --------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC
Confidence                    22334457899999999999999999999999999999987665443 334568999999999999999999


Q ss_pred             CCcEEEEECCC------CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEc
Q 006220          484 DRTARIWSMDR------IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMS  556 (656)
Q Consensus       484 Dg~i~lwd~~~------~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~s  556 (656)
                      .|++++|++-+      ..|+..+..|.+.+..+.++|+++||+++|.|.+++||+..+. +....+.+|...+...+||
T Consensus       188 kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS  267 (311)
T KOG0315|consen  188 KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS  267 (311)
T ss_pred             CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence            99999999854      3467778899999999999999999999999999999999887 6667889999999999999


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEc
Q 006220          557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYS  598 (656)
Q Consensus       557 p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s  598 (656)
                      .||.||++|+.|+.+++||+..++.+..+.+|..+..+++..
T Consensus       268 ~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  268 ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             cCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            999999999999999999999999999999998877777653

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.7e-30  Score=275.08  Aligned_cols=250  Identities=25%  Similarity=0.461  Sum_probs=227.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      ....|..++|+|...++.++-..|.|++||..-                            +..+..+..|.|||.++.|
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM----------------------------~tli~rFdeHdGpVRgv~F   59 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM----------------------------GTLIDRFDEHDGPVRGVDF   59 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhh----------------------------hhHHhhhhccCCccceeee
Confidence            456799999999999999999999999999874                            2345667889999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCee
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD  509 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~  509 (656)
                      +|++.+++||+.|-.|++|+.++.+++.++.||-..|..+.|++.-..++++|.|.+|+||+..+++++..+.||...|.
T Consensus        60 H~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVM  139 (1202)
T KOG0292|consen   60 HPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM  139 (1202)
T ss_pred             cCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCC--------C-------------------e--eEEEEecCCCCeEEEEEcCCCC
Q 006220          510 CVRWHINCNYIATGSSDKTVRLWDVSS--------G-------------------E--CVRIFIGHRSMILSLAMSPDGR  560 (656)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~V~iwd~~~--------~-------------------~--~~~~~~~h~~~i~~l~~sp~g~  560 (656)
                      |..|||....++++|-|.+||+||+..        +                   .  ...++.||...|+.++|+|.-.
T Consensus       140 cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp  219 (1202)
T KOG0292|consen  140 CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP  219 (1202)
T ss_pred             eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc
Confidence            999999999999999999999999842        1                   0  1134679999999999999999


Q ss_pred             EEEEEECCCcEEEEeCCCCe--eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          561 YMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       561 ~L~s~~~dg~I~iwD~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      +|++|++|..|++|.+...+  .+-++++|.+.|.++-|+|...+++|.|.|++|+|||+...+.+...
T Consensus       220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence            99999999999999986544  45567899999999999999999999999999999999988877655

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=9.4e-29  Score=289.19  Aligned_cols=240  Identities=23%  Similarity=0.377  Sum_probs=209.0

Q ss_pred             eCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          349 NTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       349 ~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      .+...|.+++|++ ++.+||+|+.||.|+|||+.+                            ......+.+|.+.|+++
T Consensus       530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~----------------------------~~~~~~~~~H~~~V~~l  581 (793)
T PLN00181        530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR----------------------------SQLVTEMKEHEKRVWSI  581 (793)
T ss_pred             cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC----------------------------CeEEEEecCCCCCEEEE
Confidence            3456799999987 478999999999999999874                            23456677899999999


Q ss_pred             EEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEe-cCCCEEEEEECCCcEEEEECCCCc-eeEEecCC
Q 006220          428 SFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQGHYFASSSHDRTARIWSMDRIQ-PLRIMAGH  504 (656)
Q Consensus       428 ~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s-p~~~~l~sgs~Dg~i~lwd~~~~~-~~~~~~~~  504 (656)
                      +|+| ++.+|++|+.||+|++||+.++..+..+..+ ..|.++.|+ ++|.+|++|+.||+|++||+++.+ ++..+.+|
T Consensus       582 ~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h  660 (793)
T PLN00181        582 DYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH  660 (793)
T ss_pred             EEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC
Confidence            9997 7889999999999999999999888888755 579999995 479999999999999999998765 56778899


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC------CeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~------~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      ...|.++.|. ++.+|++++.|++|++||++.      +.++..+.+|...+.+++|+|++.+|++|+.||.|++|+...
T Consensus       661 ~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        661 SKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF  739 (793)
T ss_pred             CCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence            9999999997 678999999999999999974      357888999999999999999999999999999999999876


Q ss_pred             CeeeEee-------------eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          579 GRCVTPL-------------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       579 ~~~~~~~-------------~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      ...+..+             ..|...|.+++|++++..|++|+.||.|+||++
T Consensus       740 ~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        740 PMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            5443222             234567999999999999999999999999997

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.8e-29  Score=269.81  Aligned_cols=266  Identities=24%  Similarity=0.418  Sum_probs=233.3

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...|++|+-.. .++.-.|..|.++|..++|+|++.++++|+.|-.|+||+...                          
T Consensus        30 sG~IQlWDYRM-~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~--------------------------   82 (1202)
T KOG0292|consen   30 SGVIQLWDYRM-GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT--------------------------   82 (1202)
T ss_pred             Cceeeeehhhh-hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc--------------------------
Confidence            45677886433 234456889999999999999999999999999999999875                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                        .+..-++.||-.-|..+.|++.-.+++|+|.|.||+||+..+++++.++.||+..|.|.+|+|....++++|-|.+|+
T Consensus        83 --rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR  160 (1202)
T KOG0292|consen   83 --RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR  160 (1202)
T ss_pred             --ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence              445667889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCc-----------------------------eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCe-
Q 006220          489 IWSMDRIQ-----------------------------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-  538 (656)
Q Consensus       489 lwd~~~~~-----------------------------~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~-  538 (656)
                      +||+..-+                             ...++.||...|+.++|||.-..|++|+.|+.|++|.....+ 
T Consensus       161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence            99985210                             124567999999999999999999999999999999987544 


Q ss_pred             -eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          539 -CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       539 -~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                       .+-+..+|.+.|+++-|+|...++++.|+|++|+|||+...+.+.+++...+..|.++-+|..+++++|. |+-+.||.
T Consensus       241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFk  319 (1202)
T KOG0292|consen  241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFK  319 (1202)
T ss_pred             eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEE
Confidence             3456789999999999999999999999999999999999999999988888999999999999777664 66677888


Q ss_pred             CCCCCce
Q 006220          618 VTTSTKV  624 (656)
Q Consensus       618 ~~~~~~~  624 (656)
                      +....+.
T Consensus       320 leRErpa  326 (1202)
T KOG0292|consen  320 LERERPA  326 (1202)
T ss_pred             EcccCce
Confidence            8755443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=4.7e-29  Score=238.64  Aligned_cols=263  Identities=24%  Similarity=0.407  Sum_probs=234.7

Q ss_pred             HHhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220          326 EDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (656)
Q Consensus       326 ~~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (656)
                      ....+.|.||+..-.-..+.++.+|.+.|..+.|.+|++.|++++.|.+|+.||+.+                       
T Consensus        65 gG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t-----------------------  121 (338)
T KOG0265|consen   65 GGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET-----------------------  121 (338)
T ss_pred             cCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc-----------------------
Confidence            345677889987666666778889999999999999999999999999999999986                       


Q ss_pred             CCCCCceeeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC
Q 006220          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (656)
Q Consensus       406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D  484 (656)
                           ++..+...+|.+-|.++.-+.-|. ++.||+.||++++||++...+++.+. ...+++++.|...+..+.+|+-|
T Consensus       122 -----G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggId  195 (338)
T KOG0265|consen  122 -----GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGID  195 (338)
T ss_pred             -----ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecccc
Confidence                 456677889999999998554454 56799999999999999888887775 46789999999999999999999


Q ss_pred             CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC----CeeEEEEecCCC----CeEEEEEc
Q 006220          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS----GECVRIFIGHRS----MILSLAMS  556 (656)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~----~~~~~~~~~h~~----~i~~l~~s  556 (656)
                      +.|++||++......++.||...|+.+..+|+|.++.+-+.|.++++||++.    ..++..+.+|..    .....+|+
T Consensus       196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws  275 (338)
T KOG0265|consen  196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS  275 (338)
T ss_pred             CceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence            9999999999999999999999999999999999999999999999999984    456888888754    35668899


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       557 p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      |++..+.+|+.|..+++||..+...+..+.||.+.|.+++|+|...+|.+++.|.+|++=.
T Consensus       276 p~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  276 PNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             CCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            9999999999999999999999899999999999999999999999999999999998643

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2e-29  Score=241.37  Aligned_cols=264  Identities=25%  Similarity=0.449  Sum_probs=214.1

Q ss_pred             EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC-CCCCceeeEEeecCcc
Q 006220          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG-PNGRKRSYTLYQGHSG  422 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~h~~  422 (656)
                      -.++..|.+.+.|.+||+||.++|+|+.|..|+|.|+...-....           ..+.+.. .......++++..|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~-----------~~em~~~~~qa~hPvIRTlYDH~d  173 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK-----------PKEMISGDTQARHPVIRTLYDHVD  173 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc-----------hhhhccCCcccCCceEeehhhccC
Confidence            345678899999999999999999999999999999874211100           0000111 1122457788999999


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee--CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~  500 (656)
                      +|+++.|+|....|++|+.|++|++||.........++  ....+|.++.|+|.|.++++|....++++||+.+.++...
T Consensus       174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs  253 (430)
T KOG0640|consen  174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS  253 (430)
T ss_pred             cccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence            99999999999999999999999999987543332222  2467899999999999999999999999999999877654


Q ss_pred             ec---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCC-CCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          501 MA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHR-SMILSLAMSPDGRYMASGDEDGTIMMWD  575 (656)
Q Consensus       501 ~~---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~-~~i~~l~~sp~g~~L~s~~~dg~I~iwD  575 (656)
                      -.   .|.+.|++|.++++++..+||+.||.|++||--+++|++++. .|. +.|.+..|..+|+|+++.+.|..+++|.
T Consensus       254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE  333 (430)
T KOG0640|consen  254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE  333 (430)
T ss_pred             cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence            33   788999999999999999999999999999999999998875 454 4688999999999999999999999999


Q ss_pred             CCCCeeeEeee-------------------------------------------------CCCccEEEEEEcCCCCEEEE
Q 006220          576 LASGRCVTPLM-------------------------------------------------GHTSCVWTLAYSCEGSLLAS  606 (656)
Q Consensus       576 ~~~~~~~~~~~-------------------------------------------------~h~~~V~~l~~s~~~~~l~s  606 (656)
                      +.+++++..+.                                                 +|++.+..+.-||.+..+++
T Consensus       334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmT  413 (430)
T KOG0640|consen  334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMT  413 (430)
T ss_pred             ecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceee
Confidence            99888776542                                                 46666777777777777777


Q ss_pred             EECCCcEEEEeC
Q 006220          607 GSADCTVKLWDV  618 (656)
Q Consensus       607 gs~Dg~I~iWd~  618 (656)
                      |+.|-.+++|--
T Consensus       414 csdD~raRFWyr  425 (430)
T KOG0640|consen  414 CSDDFRARFWYR  425 (430)
T ss_pred             ecccceeeeeee
Confidence            777777777753

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-28  Score=231.84  Aligned_cols=247  Identities=23%  Similarity=0.372  Sum_probs=219.4

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+.+|..+++-+.|+.+|.+|.+++.|..+.||--..                            +..+-.+.||++.|+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n----------------------------GerlGty~GHtGavW   56 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN----------------------------GERLGTYDGHTGAVW   56 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecC----------------------------CceeeeecCCCceEE
Confidence            3578999999999999999999999999999997533                            346677899999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-----CCcEEEEECC-------
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-----DRTARIWSMD-------  493 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-----Dg~i~lwd~~-------  493 (656)
                      |+..+.+.+.+++|+.|.++++||+.+|+++..++ ...+|..+.|+++|++++.+..     .+.|.++|++       
T Consensus        57 ~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~  135 (327)
T KOG0643|consen   57 CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID  135 (327)
T ss_pred             EEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc
Confidence            99999999999999999999999999999999988 4678999999999999888763     4689999998       


Q ss_pred             CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (656)
Q Consensus       494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~  572 (656)
                      ...|...+..+.+.++.+-|.|-+.+|++|..||.|.+||+++| +.+..-..|...|+.|++++|..++++++.|.+-+
T Consensus       136 s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttak  215 (327)
T KOG0643|consen  136 SEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAK  215 (327)
T ss_pred             ccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccce
Confidence            45678888888899999999999999999999999999999998 55666678999999999999999999999999999


Q ss_pred             EEeCCCCeeeE-------------------------------------------------------eeeCCCccEEEEEE
Q 006220          573 MWDLASGRCVT-------------------------------------------------------PLMGHTSCVWTLAY  597 (656)
Q Consensus       573 iwD~~~~~~~~-------------------------------------------------------~~~~h~~~V~~l~~  597 (656)
                      +||..+..+++                                                       ++++|-++|++++|
T Consensus       216 l~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAf  295 (327)
T KOG0643|consen  216 LVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAF  295 (327)
T ss_pred             eeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEE
Confidence            99986543322                                                       23678899999999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCC
Q 006220          598 SCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       598 s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      +|+|+..+||+.||.|++.-+...
T Consensus       296 hPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  296 HPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             CCCCcccccCCCCceEEEEEeccc
Confidence            999999999999999999876553

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=4.9e-28  Score=264.79  Aligned_cols=225  Identities=19%  Similarity=0.327  Sum_probs=184.9

Q ss_pred             EeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC-CCEEEEEeCCCeEEE
Q 006220          369 GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRL  447 (656)
Q Consensus       369 g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-~~~L~s~s~Dg~I~l  447 (656)
                      |+.++.|++|+...                            ......+.+|.++|.+++|+|+ +.+|++|+.||+|++
T Consensus        50 GG~~gvI~L~~~~r----------------------------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrI  101 (568)
T PTZ00420         50 GGLIGAIRLENQMR----------------------------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRV  101 (568)
T ss_pred             CCceeEEEeeecCC----------------------------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Confidence            55678899998653                            2345678899999999999997 789999999999999


Q ss_pred             EeccCCc--------eeEEeeCCCccEEEEEEecCCCE-EEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCC
Q 006220          448 WSTKLNA--------NLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN  518 (656)
Q Consensus       448 wd~~~~~--------~~~~~~~h~~~V~~l~~sp~~~~-l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~  518 (656)
                      ||+.++.        .+..+.+|...|.+++|+|++.. +++++.|++|++||+++++.+..+. |...|.+++|+|+|.
T Consensus       102 WDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~  180 (568)
T PTZ00420        102 WEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN  180 (568)
T ss_pred             EECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC
Confidence            9997642        24467889999999999998876 5789999999999999988777765 567899999999999


Q ss_pred             EEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEE-----EEcCCCCEEEEEECCC----cEEEEeCCC-CeeeEeeeC-
Q 006220          519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL-----AMSPDGRYMASGDEDG----TIMMWDLAS-GRCVTPLMG-  587 (656)
Q Consensus       519 ~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l-----~~sp~g~~L~s~~~dg----~I~iwD~~~-~~~~~~~~~-  587 (656)
                      +|++++.|+.|++||+++++.+..+.+|.+.+.+.     .|++++.+|++++.|+    .|+|||++. ++++..+.. 
T Consensus       181 lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld  260 (568)
T PTZ00420        181 LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID  260 (568)
T ss_pred             EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec
Confidence            99999999999999999999999999998865432     3568899999988774    799999985 556655443 


Q ss_pred             -CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          588 -HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       588 -h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                       +.+.+......++|.++++|+.|++|++|++..+.
T Consensus       261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence             33444444445678999999999999999997753

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.7e-29  Score=260.03  Aligned_cols=265  Identities=25%  Similarity=0.432  Sum_probs=233.8

Q ss_pred             hccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220          328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (656)
Q Consensus       328 ~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (656)
                      ....+.+|+-.... ....|.-..-+|.++.|-.-.+++++|+.|..|+||+..+                         
T Consensus        33 ynG~V~IWnyetqt-mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt-------------------------   86 (794)
T KOG0276|consen   33 YNGDVQIWNYETQT-MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT-------------------------   86 (794)
T ss_pred             ecCeeEEEecccce-eeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc-------------------------
Confidence            34577888754332 2234556677899999999999999999999999999986                         


Q ss_pred             CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccC-CceeEEeeCCCccEEEEEEec-CCCEEEEEECCC
Q 006220          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDR  485 (656)
Q Consensus       408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg  485 (656)
                         ...+..+..|+.-|.|++.+|...+++|+|.|-+|++||.+. +.+.+++.||..-|.+++|+| |.+.|++++-|+
T Consensus        87 ---~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen   87 ---GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             ---ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence               456788999999999999999999999999999999999874 577889999999999999999 678899999999


Q ss_pred             cEEEEECCCCceeEEecCCCCCeeEEEEcCCC--CEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~--~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~  563 (656)
                      +|++|.+.+..+..++.+|...|+|+.|-+-|  .||++|+.|.+|++||.++..|++++.||...|+++.|+|.-..++
T Consensus       164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii  243 (794)
T KOG0276|consen  164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII  243 (794)
T ss_pred             cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence            99999999999999999999999999998744  6999999999999999999999999999999999999999999999


Q ss_pred             EEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       564 s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      +|++||+++||...+-+...++.-.-+.|++++-.+.+..++.|...|.|. ..+....
T Consensus       244 sgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgree  301 (794)
T KOG0276|consen  244 SGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREE  301 (794)
T ss_pred             EecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCC
Confidence            999999999999999888888877778999999999888888887777653 3444333

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.7e-28  Score=241.40  Aligned_cols=264  Identities=24%  Similarity=0.460  Sum_probs=221.4

Q ss_pred             hccceecCCCCCCceeEEEEeeCCCCeEEEEEcC-C--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220          328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQ-D--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (656)
Q Consensus       328 ~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~-d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (656)
                      +....++|+.  ...+.++..+|.+.|.+++|-. +  ...+++++.|.++++|.++.....                  
T Consensus       123 YDg~~riWd~--~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~------------------  182 (423)
T KOG0313|consen  123 YDGTSRIWDL--KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK------------------  182 (423)
T ss_pred             cCCeeEEEec--CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh------------------
Confidence            3445566654  4456678899999999887743 2  346999999999999998752211                  


Q ss_pred             cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEecc-------------------------CCceeEEe
Q 006220          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-------------------------LNANLVCY  459 (656)
Q Consensus       405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~-------------------------~~~~~~~~  459 (656)
                            ........||..+|-+++..++|..+++||.|.+|.+|+..                         ++.++..+
T Consensus       183 ------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl  256 (423)
T KOG0313|consen  183 ------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL  256 (423)
T ss_pred             ------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence                  11222334999999999999999999999999999999921                         23446778


Q ss_pred             eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCe-
Q 006220          460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-  538 (656)
Q Consensus       460 ~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~-  538 (656)
                      .||..+|.++.|++ ...++++|.|.+|+.||+.++..+..+.+. ..++|+..+|..+.|++|+.|..+|+||.+++. 
T Consensus       257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence            89999999999998 678999999999999999999988887754 679999999999999999999999999999763 


Q ss_pred             --eEEEEecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCe-eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEE
Q 006220          539 --CVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK  614 (656)
Q Consensus       539 --~~~~~~~h~~~i~~l~~sp~g-~~L~s~~~dg~I~iwD~~~~~-~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~  614 (656)
                        ....|.+|.+.|.++.|+|.. ..|++|+.||++++||+++.+ ++..+.+|...|.++.|+ ++..+++||.|++|+
T Consensus       335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR  413 (423)
T ss_pred             ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence              456789999999999999965 568899999999999999987 999999999999999997 556899999999999


Q ss_pred             EEeCCC
Q 006220          615 LWDVTT  620 (656)
Q Consensus       615 iWd~~~  620 (656)
                      |+.-..
T Consensus       414 i~~~~~  419 (423)
T KOG0313|consen  414 IFKGSP  419 (423)
T ss_pred             Eecccc
Confidence            987543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.8e-28  Score=241.11  Aligned_cols=260  Identities=29%  Similarity=0.499  Sum_probs=218.0

Q ss_pred             eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (656)
Q Consensus       349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  428 (656)
                      -|.+-|.++...  +.++++|+.||.++||+...                             .....+.||+++|.+++
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-----------------------------k~~~~~~Ght~~ik~v~  151 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-----------------------------KSIKTIVGHTGPIKSVA  151 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCC-----------------------------ceEEEEecCCcceeeeE
Confidence            456667777776  78999999999999999773                             56677889999999988


Q ss_pred             EccCCC---EEEEEeCCCeEEEEeccCCce----eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC--------
Q 006220          429 FSPLGD---FILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--------  493 (656)
Q Consensus       429 ~spd~~---~L~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~--------  493 (656)
                      |.-.+.   .|+++|.|.++++|-.+.+..    +...+||..+|-+++..++|..|++|+.|.++.+|+..        
T Consensus       152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E  231 (423)
T KOG0313|consen  152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELE  231 (423)
T ss_pred             EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccccc
Confidence            865444   599999999999999887654    34456999999999999999999999999999999932        


Q ss_pred             -----------------CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEc
Q 006220          494 -----------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS  556 (656)
Q Consensus       494 -----------------~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~s  556 (656)
                                       ++.|+..+.||..+|.+|.|++ ...+++++.|.+|+.||+.++.++..+.+. ..+.|+..+
T Consensus       232 ~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~  309 (423)
T KOG0313|consen  232 SSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYS  309 (423)
T ss_pred             ccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecc
Confidence                             2346778889999999999998 678999999999999999999999887754 569999999


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCe---eeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCceeecccccC
Q 006220          557 PDGRYMASGDEDGTIMMWDLASGR---CVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSG  632 (656)
Q Consensus       557 p~g~~L~s~~~dg~I~iwD~~~~~---~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~  632 (656)
                      |..++|++|+.|..|++||.+++.   ...++.+|++-|.++.|+|. ..+|++|+.||++++||+++...         
T Consensus       310 ~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~---------  380 (423)
T KOG0313|consen  310 PLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA---------  380 (423)
T ss_pred             cccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC---------
Confidence            999999999999999999998763   44677899999999999995 45789999999999999998652         


Q ss_pred             CccccccccccCCCCCeEEEEEc
Q 006220          633 TNRLRSLKTLPTKSTPVYSLQVL  655 (656)
Q Consensus       633 ~~~~~~l~~~p~~~~pv~sv~Ft  655 (656)
                           .|+.+.++...|.++.++
T Consensus       381 -----plydI~~h~DKvl~vdW~  398 (423)
T KOG0313|consen  381 -----PLYDIAGHNDKVLSVDWN  398 (423)
T ss_pred             -----cceeeccCCceEEEEecc
Confidence                 234444555555555543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=5.4e-28  Score=227.11  Aligned_cols=268  Identities=21%  Similarity=0.370  Sum_probs=230.4

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      +.+|...|.+++|+.+|..||+|+.|++++||++....                          ...-....+|.+.|-.
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--------------------------~~~~~~~~gh~~svdq   69 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--------------------------FRKELVYRGHTDSVDQ   69 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchh--------------------------hhhhhcccCCCcchhh
Confidence            45667789999999999999999999999999998531                          1122346689999999


Q ss_pred             EEEccCC-CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220          427 ASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (656)
Q Consensus       427 l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~  505 (656)
                      ++|+|.. ..|++++.|.+|++||++.+++..........| -+.|+|+|.++++++.|..|.+.|.++.+.+.... ..
T Consensus        70 l~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~  147 (313)
T KOG1407|consen   70 LCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FK  147 (313)
T ss_pred             heeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-cc
Confidence            9999855 589999999999999999999998887665555 58899999999999999999999999887776554 44


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      ..+.-++|+.++++++..+..|+|.|.....-+++..++.|...+.||.|+|+|+++|+|+.|-.+.+||+...-|+..+
T Consensus       148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i  227 (313)
T KOG1407|consen  148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI  227 (313)
T ss_pred             ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence            56788899977777777777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCC
Q 006220          586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK  645 (656)
Q Consensus       586 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~  645 (656)
                      ..+.-+|..++||.+|++||+|+.|-.|-|=++.+|.++...+....   ...+++-|..
T Consensus       228 sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~  284 (313)
T KOG1407|consen  228 SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKR  284 (313)
T ss_pred             ccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCC
Confidence            99999999999999999999999999999999999999887654322   2344455544

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=2.9e-27  Score=241.06  Aligned_cols=251  Identities=24%  Similarity=0.380  Sum_probs=217.0

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+.+|...++-..|||.|-|+|+|...|.||||+.....                          ...-..++.-.++|.
T Consensus        54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~--------------------------hiLKnef~v~aG~I~  107 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKE--------------------------HILKNEFQVLAGPIK  107 (603)
T ss_pred             eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcc--------------------------eeeeeeeeecccccc
Confidence            345667789999999999999999999999999986411                          122234555679999


Q ss_pred             EEEEccCCCEEEEEeCC----CeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEECCCcEEEEECCCCceeEE
Q 006220          426 SASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRI  500 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~Dg~i~lwd~~~~~~~~~  500 (656)
                      .++|+++++.+++.++.    |.+.+||  ++..+-.+.||...|.++.|-|... .++||+.|+++.+|.-.-.+-...
T Consensus       108 Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s  185 (603)
T KOG0318|consen  108 DISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSS  185 (603)
T ss_pred             cceeCCCCcEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeec
Confidence            99999999988877653    3455555  5788889999999999999999654 599999999999998776677777


Q ss_pred             ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe---cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI---GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (656)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~---~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~  577 (656)
                      +..|..-|.|+.|+|+|..+++.+.||+|.+||=.+|+.+..+.   +|.+.|.+++|+||+..+++++.|.+++|||+.
T Consensus       186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs  265 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVS  265 (603)
T ss_pred             ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEee
Confidence            88999999999999999999999999999999999999999998   899999999999999999999999999999987


Q ss_pred             CCeeeE-------------------------------------------eeeCCCccEEEEEEcCCCCEEEEEECCCcEE
Q 006220          578 SGRCVT-------------------------------------------PLMGHTSCVWTLAYSCEGSLLASGSADCTVK  614 (656)
Q Consensus       578 ~~~~~~-------------------------------------------~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~  614 (656)
                      +.+++.                                           .+.+|...|+++..++++++|++|+.||.|.
T Consensus       266 ~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~  345 (603)
T KOG0318|consen  266 TNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHIN  345 (603)
T ss_pred             ccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEE
Confidence            654433                                           2358999999999999999999999999999


Q ss_pred             EEeCCCCCce
Q 006220          615 LWDVTTSTKV  624 (656)
Q Consensus       615 iWd~~~~~~~  624 (656)
                      -|+..++..-
T Consensus       346 ~W~~~~g~~~  355 (603)
T KOG0318|consen  346 SWDSGSGTSD  355 (603)
T ss_pred             EEecCCcccc
Confidence            9999987754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=2.1e-29  Score=254.82  Aligned_cols=214  Identities=30%  Similarity=0.518  Sum_probs=190.8

Q ss_pred             ceeeEEeecCccCEEEEEEcc-CCCEEEEEeCCCeEEEEeccC-CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220          411 KRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       411 ~~~~~~l~~h~~~V~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                      ......+.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +.++.+|.+|..+|.+++|+++|..|+++|.|+.++
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence            456678999999999999999 788999999999999999876 889999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      +||+++++++..+.. ...++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+.+++.++
T Consensus       284 lwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD  362 (503)
T KOG0282|consen  284 LWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD  362 (503)
T ss_pred             eeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence            999999999988873 4678999999988 88999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCCCeee----------------------------------------------EeeeCCC--ccEEEEEEcC
Q 006220          568 DGTIMMWDLASGRCV----------------------------------------------TPLMGHT--SCVWTLAYSC  599 (656)
Q Consensus       568 dg~I~iwD~~~~~~~----------------------------------------------~~~~~h~--~~V~~l~~s~  599 (656)
                      |++++||+.+..-.+                                              +.+.+|.  +.-..+.|||
T Consensus       363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp  442 (503)
T KOG0282|consen  363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP  442 (503)
T ss_pred             CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence            999999997643211                                              1124554  4456789999


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          600 EGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       600 ~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      ||.+|++|+.||.+.+||.++.+.+.
T Consensus       443 DG~~l~SGdsdG~v~~wdwkt~kl~~  468 (503)
T KOG0282|consen  443 DGRTLCSGDSDGKVNFWDWKTTKLVS  468 (503)
T ss_pred             CCCeEEeecCCccEEEeechhhhhhh
Confidence            99999999999999999998866443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1e-27  Score=261.41  Aligned_cols=263  Identities=27%  Similarity=0.480  Sum_probs=235.9

Q ss_pred             hccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220          328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (656)
Q Consensus       328 ~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (656)
                      ....+++|+......+.-.+.+|.++|++++|..-+.+|++|+.|.+++|||+.+                         
T Consensus       226 ~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-------------------------  280 (537)
T KOG0274|consen  226 DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-------------------------  280 (537)
T ss_pred             CCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-------------------------
Confidence            3456677876655555555999999999999988889999999999999999775                         


Q ss_pred             CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcE
Q 006220          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (656)
Q Consensus       408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i  487 (656)
                         +.....+.+|.+.|.++...  ...+++||.|.+|++|++.++.++..+.+|..+|.++..+  +.++++|+.|++|
T Consensus       281 ---g~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  281 ---GECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV  353 (537)
T ss_pred             ---CcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence               45677888999999999886  4578889999999999999999999999999999999997  8899999999999


Q ss_pred             EEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~  566 (656)
                      ++||+.+++++..+.+|...|.++.+.+. +++++|+.|++|++||+++. +|+.++.+|.+-+..+.+.  +++|++++
T Consensus       354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~  430 (537)
T KOG0274|consen  354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSS  430 (537)
T ss_pred             EEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEecc
Confidence            99999999999999999999999988765 89999999999999999999 9999999999988777664  78999999


Q ss_pred             CCCcEEEEeCCCCeeeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          567 EDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       567 ~dg~I~iwD~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      .||.|++||..+++++..+.+ |.+.|+.+++.  ...+++++.||++++||+.+++.....
T Consensus       431 aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  431 ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            999999999999999999998 67899999887  467899999999999999998877644

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=9.2e-27  Score=225.23  Aligned_cols=253  Identities=23%  Similarity=0.340  Sum_probs=215.4

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      |....+.|+++.|+++|.+|++++.|..++|||...                            +........+.-.|..
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------------g~~~~ti~skkyG~~~   61 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------------GKQVKTINSKKYGVDL   61 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------------CceeeEeecccccccE
Confidence            344567899999999999999999999999999875                            2344555556667888


Q ss_pred             EEEccCCCEEEEEeC--CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220          427 ASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (656)
Q Consensus       427 l~~spd~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  504 (656)
                      ++|......++.++.  |.+||.-++.+.+.++.+.||...|.+++.+|-+..|++++.|++|++||++..++...+.. 
T Consensus        62 ~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-  140 (311)
T KOG1446|consen   62 ACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-  140 (311)
T ss_pred             EEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-
Confidence            888877777777776  88999999999999999999999999999999999999999999999999998888777653 


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--eeEEEEe---cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFI---GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~--~~~~~~~---~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                       ..-..++|.|.|-++|++.....|++||++.-  .+..+|.   +.....+.|.|||||++|+.++..+.+.+.|.-+|
T Consensus       141 -~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G  219 (311)
T KOG1446|consen  141 -SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG  219 (311)
T ss_pred             -CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence             33456789999999999988889999999863  4444444   33567899999999999999999999999999999


Q ss_pred             eeeEeeeCCCcc---EEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220          580 RCVTPLMGHTSC---VWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       580 ~~~~~~~~h~~~---V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      ....++.++...   -.+.+|+||++++++|+.||+|.+|++.++.++.....
T Consensus       220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence            999988876632   25788999999999999999999999999988766544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=1.1e-27  Score=241.32  Aligned_cols=263  Identities=27%  Similarity=0.432  Sum_probs=218.0

Q ss_pred             CceeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee
Q 006220          340 PSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ  418 (656)
Q Consensus       340 ps~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  418 (656)
                      +.+.....+.|.+.|+.+.+-|. ..++|+++..+.|.|||.........                  ..+....-..+.
T Consensus       113 ~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~------------------~~~~~~Pdl~L~  174 (422)
T KOG0264|consen  113 GKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK------------------ASGECRPDLRLK  174 (422)
T ss_pred             cceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc------------------ccccCCCceEEE
Confidence            34556667899999999999986 56677888899999999875321111                  001233446788


Q ss_pred             cCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCce-------eEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEE
Q 006220          419 GHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARI  489 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~l  489 (656)
                      ||.+.-++++|++... .|++|+.|++|++||+.....       ...+.+|...|.+++|++ +...|++++.|+.+.|
T Consensus       175 gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i  254 (422)
T KOG0264|consen  175 GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI  254 (422)
T ss_pred             eecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE
Confidence            9999899999999765 799999999999999875432       467889999999999999 5678999999999999


Q ss_pred             EECC--CCceeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCC-CEEEE
Q 006220          490 WSMD--RIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDG-RYMAS  564 (656)
Q Consensus       490 wd~~--~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g-~~L~s  564 (656)
                      ||++  +.++.....+|.+.|.|++|+| ++..|||||.|++|.+||+|+- .++.++.+|...|.++.|||+. ..||+
T Consensus       255 wD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLAS  334 (422)
T KOG0264|consen  255 WDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLAS  334 (422)
T ss_pred             EEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEe
Confidence            9999  6677788889999999999999 6677899999999999999974 5788999999999999999964 58899


Q ss_pred             EECCCcEEEEeCCCC--------------eeeEeeeCCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCC
Q 006220          565 GDEDGTIMMWDLASG--------------RCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTT  620 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~--------------~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~  620 (656)
                      ++.|+.+.|||+..-              +++..-.||...|..++|+|+.. .|+|.+.|+.+.||++..
T Consensus       335 Sg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  335 SGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            999999999999642              23455568999999999999765 578889999999999874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.5e-27  Score=262.76  Aligned_cols=268  Identities=23%  Similarity=0.404  Sum_probs=222.6

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      +...|.+.|+|+.|||||++||+|+.|+.|.||.......... .+..+..         ..-...+.+..+.+|.+.|.
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~-fgs~g~~---------~~vE~wk~~~~l~~H~~DV~  133 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTV-FGSTGGA---------KNVESWKVVSILRGHDSDVL  133 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccc-ccccccc---------cccceeeEEEEEecCCCccc
Confidence            5678899999999999999999999999999999874110000 0000000         01122457788999999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~  505 (656)
                      .++|+|++.+|++++.|++|.+|+..++..+..+.+|.+.|-++.|.|-|+|||+-+.|++|++|++.+....+.+.++.
T Consensus       134 Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf  213 (942)
T KOG0973|consen  134 DVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF  213 (942)
T ss_pred             eeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999988776766666443


Q ss_pred             ------CCeeEEEEcCCCCEEEEEE----CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC-------------CC--
Q 006220          506 ------SDVDCVRWHINCNYIATGS----SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-------------GR--  560 (656)
Q Consensus       506 ------~~V~~v~~~p~~~~l~tgs----~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~-------------g~--  560 (656)
                            ..+..+.|+|+|.+|++..    .-.++.|.+..+.+.-..+.||.+++.++.|+|.             +.  
T Consensus       214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence                  3467899999999999854    2347889998888888899999999999999981             11  


Q ss_pred             --EEEEEECCCcEEEEeCCCCeeeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          561 --YMASGDEDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       561 --~L~s~~~dg~I~iwD~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                        .+|+|+.|++|.||.....+++..... ....|..++|+|||-.|+.+|.||+|.+..+...+.
T Consensus       294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence              678899999999999988777765542 347899999999999999999999999999986543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.5e-27  Score=228.16  Aligned_cols=246  Identities=23%  Similarity=0.393  Sum_probs=211.0

Q ss_pred             EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      .|.+..|.++|+|++.  ++.++|+|+.|-+|+|||+..                            ......+..|.+.
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k----------------------------~~qlg~ll~Hags   85 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK----------------------------RKQLGILLSHAGS   85 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccc----------------------------hhhhcceeccccc
Confidence            5678889999999998  589999999999999999985                            2344556779999


Q ss_pred             EEEEEEccCCC--EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220          424 VYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       424 V~~l~~spd~~--~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      |+++.|.++..  +|++|+.||.|.+|+...+.++..+++|...|+.++.+|.|.+-++.+.|+.++.||+-+++.-...
T Consensus        86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~  165 (362)
T KOG0294|consen   86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL  165 (362)
T ss_pred             eEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence            99999999775  8999999999999999999999999999999999999999999999999999999999887765555


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                      .-. ..-+.|.|+|.|.+++.++.+ .|-+|.+.+....+.+.. ...+.|+.|- ++..|++|++|+.|.+||..++.+
T Consensus       166 ~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~  241 (362)
T KOG0294|consen  166 NLK-NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP  241 (362)
T ss_pred             ccC-CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCcc
Confidence            422 233459999999999988765 688999887766554432 2457777775 567899999999999999999999


Q ss_pred             eEeeeCCCccEEEEEE--cCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          582 VTPLMGHTSCVWTLAY--SCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       582 ~~~~~~h~~~V~~l~~--s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      ...+.+|...|.++.+  .|++.+|+|+|.||.|+|||++...+
T Consensus       242 ~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  242 LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence            9999999999999985  66789999999999999999988744

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.7e-27  Score=241.50  Aligned_cols=262  Identities=22%  Similarity=0.344  Sum_probs=218.6

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ..|++|++...-+.. -++......|.+++|-.||++||+|...|.|+|||+.+                          
T Consensus        47 S~rvqly~~~~~~~~-k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--------------------------   99 (487)
T KOG0310|consen   47 SVRVQLYSSVTRSVR-KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--------------------------   99 (487)
T ss_pred             ccEEEEEecchhhhh-hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--------------------------
Confidence            345555543322211 13445567899999999999999999999999999653                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCc
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRT  486 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~  486 (656)
                        ....+.+.+|+.+|..+.|+|.+. .|++|+.|+.+++||+.+......+.+|+..|.|.+|+| +++.++|||.||+
T Consensus       100 --r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~  177 (487)
T KOG0310|consen  100 --RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK  177 (487)
T ss_pred             --HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence              235567889999999999999665 678999999999999998887668899999999999999 5668999999999


Q ss_pred             EEEEECCCC-ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EEEEecCCCCeEEEEEcCCCCEEEE
Q 006220          487 ARIWSMDRI-QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       487 i~lwd~~~~-~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~~~~~h~~~i~~l~~sp~g~~L~s  564 (656)
                      |++||++.. ..+..+ .|..+|..+.+-|+|..|++++ ...|++||+.+|.. +..+..|...|+|+++..++..|++
T Consensus       178 vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS  255 (487)
T KOG0310|consen  178 VRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS  255 (487)
T ss_pred             EEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEee
Confidence            999999987 555555 4889999999999999999886 45899999996654 4444459999999999999999999


Q ss_pred             EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      |+-||.|++||+.+.+.+..+. ..++|.+++.+|+++.++.|..||.+.+=+....+
T Consensus       256 ~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  256 GSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             cccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence            9999999999998888888874 56899999999999999999999998887554433

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2.9e-27  Score=236.04  Aligned_cols=238  Identities=24%  Similarity=0.419  Sum_probs=214.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      .+++++...+..+.+++|+.|..+.++|...                            .+....+.||...|+.+.|+|
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s----------------------------~q~l~~~~Gh~kki~~v~~~~  271 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPS----------------------------NQILATLKGHTKKITSVKFHK  271 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecch----------------------------hhhhhhccCcceEEEEEEecc
Confidence            3578888888888999999999999999764                            346677899999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC--CCCee
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH--LSDVD  509 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~--~~~V~  509 (656)
                      +...+++++.|..|++|+.....+......|..+|+.+..+|.|.||++++.||+..+.|++++..+......  .-.++
T Consensus       272 ~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t  351 (506)
T KOG0289|consen  272 DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT  351 (506)
T ss_pred             chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence            9999999999999999999988888888999999999999999999999999999999999999888776642  34589


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC
Q 006220          510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT  589 (656)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~  589 (656)
                      +.+|||||..+.+|+.||.|+|||+.++..+..|.+|.++|..|+|+.+|-||+++++|+.|++||++..+.+.++....
T Consensus       352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~  431 (506)
T KOG0289|consen  352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE  431 (506)
T ss_pred             EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988888776443


Q ss_pred             -ccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          590 -SCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       590 -~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                       ..|.+++|.+.|++|+.+|.|=.|++++
T Consensus       432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  432 KKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             cccceeEEEcCCCCeEEeecceeEEEEEe
Confidence             4799999999999999998775555555

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1.5e-26  Score=252.04  Aligned_cols=233  Identities=16%  Similarity=0.219  Sum_probs=193.1

Q ss_pred             EeeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          347 FINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      +.+|.+.|++++|+| ++++||+|+.||.|+||++.......                     ........+.+|...|.
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---------------------~~~~~l~~L~gH~~~V~  129 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---------------------NISDPIVHLQGHTKKVG  129 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---------------------ccCcceEEecCCCCcEE
Confidence            578899999999999 89999999999999999987521100                     01124556889999999


Q ss_pred             EEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220          426 SASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (656)
Q Consensus       426 ~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  504 (656)
                      +++|+|++ .+|++|+.|++|+|||+.++..+..+.+|...|.+++|+|+|.+|++|+.|++|++||+++++.+..+.+|
T Consensus       130 ~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H  209 (493)
T PTZ00421        130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH  209 (493)
T ss_pred             EEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence            99999986 68999999999999999999999899999999999999999999999999999999999999999888888


Q ss_pred             CCC-eeEEEEcCCCCEEEEEE----CCCcEEEEeCCCCe-eEEEEecC-CCCeEEEEEcCCCCEEEEEE-CCCcEEEEeC
Q 006220          505 LSD-VDCVRWHINCNYIATGS----SDKTVRLWDVSSGE-CVRIFIGH-RSMILSLAMSPDGRYMASGD-EDGTIMMWDL  576 (656)
Q Consensus       505 ~~~-V~~v~~~p~~~~l~tgs----~dg~V~iwd~~~~~-~~~~~~~h-~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~  576 (656)
                      .+. +..+.|++++..+++++    .|+.|++||+++.. ++.....+ ...+....|++++++|++|+ .||.|++||+
T Consensus       210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence            765 45678999888887654    47899999998754 34333333 34566678999999999887 5999999999


Q ss_pred             CCCeeeEeeeC-CCccEEEEEEcCC
Q 006220          577 ASGRCVTPLMG-HTSCVWTLAYSCE  600 (656)
Q Consensus       577 ~~~~~~~~~~~-h~~~V~~l~~s~~  600 (656)
                      .+++.+..... +..++.+++|.|.
T Consensus       290 ~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        290 MNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             eCCceEEEeeccCCCCCcceEeccc
Confidence            99988776543 4467788888885

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=3.2e-27  Score=249.45  Aligned_cols=265  Identities=25%  Similarity=0.424  Sum_probs=225.1

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+.+|+... ..|..++..  +-+.|..|-|.++++++|...|.+.|||+..                          
T Consensus       393 ~~SikiWn~~t-~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS--------------------------  443 (888)
T KOG0306|consen  393 GESIKIWNRDT-LKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS--------------------------  443 (888)
T ss_pred             CCcEEEEEccC-cceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh--------------------------
Confidence            34555665432 223333322  2677888888888888888888888888764                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccC-----CceeEEee-------CCCccEEEEEEecCCC
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-----NANLVCYK-------GHNYPVWDVQFNPQGH  476 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~-----~~~~~~~~-------~h~~~V~~l~~sp~~~  476 (656)
                        ...+.....|.+.|++++.+||+..+++||.|.+|++||..-     +.....++       .-...|.|+.+||||.
T Consensus       444 --~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk  521 (888)
T KOG0306|consen  444 --ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK  521 (888)
T ss_pred             --hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence              223444568999999999999999999999999999999641     11111111       1346799999999999


Q ss_pred             EEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEc
Q 006220          477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS  556 (656)
Q Consensus       477 ~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~s  556 (656)
                      +++++--|.++++|-+++.+-.-.+.||.-+|.|+..+|+++.++|||.|++|+||-+.=|.|-+.+.+|...|.++.|.
T Consensus       522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~  601 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL  601 (888)
T ss_pred             EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence            99999999999999999999989999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       557 p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      |....+.++|.||.|+-||-..-.++..+.+|...|++++.+|+|.+++|+|.|.+|++|........
T Consensus       602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~  669 (888)
T KOG0306|consen  602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI  669 (888)
T ss_pred             ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence            99999999999999999999999999999999999999999999999999999999999998764443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=3.6e-27  Score=257.19  Aligned_cols=243  Identities=30%  Similarity=0.562  Sum_probs=220.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE-eecCccCEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQGHSGPVYSAS  428 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~l~  428 (656)
                      +...+.|..|.  ..++++|+.+++|++|+...                            ...+.. +.||.+.|.+++
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~----------------------------~~~i~~~l~GH~g~V~~l~  256 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN----------------------------GYLILTRLVGHFGGVWGLA  256 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeeccc----------------------------ceEEEeeccCCCCCceeEE
Confidence            45679999998  66899999999999999875                            234444 899999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCe
Q 006220          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV  508 (656)
Q Consensus       429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V  508 (656)
                      +..-+..|++|+.|.++++||..++.+...+.+|...|.++...  +.++++|+.|.+|++|++.++..+..+.+|..+|
T Consensus       257 ~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V  334 (537)
T KOG0274|consen  257 FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPV  334 (537)
T ss_pred             EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccE
Confidence            98878899999999999999999999999999999999988875  5578889999999999999999999999999999


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeeEeeeC
Q 006220          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMG  587 (656)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~-~~~~~~~~  587 (656)
                      .++..+  +.++++|+.|++|++||+.+++++..+.+|...|.++.+.+. ..+++|+.|++|++||+.+. +++..+.+
T Consensus       335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~  411 (537)
T KOG0274|consen  335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG  411 (537)
T ss_pred             EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC
Confidence            999997  889999999999999999999999999999999999988865 89999999999999999999 99999999


Q ss_pred             CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220          588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       588 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      |.+-|.++.+  .+++|++++.||+|++||..+++.......
T Consensus       412 h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  412 HTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             Cccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence            9998877665  477999999999999999999888766654

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.1e-27  Score=236.91  Aligned_cols=270  Identities=23%  Similarity=0.404  Sum_probs=225.9

Q ss_pred             ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC-CCCCceeeEEeec
Q 006220          341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG-PNGRKRSYTLYQG  419 (656)
Q Consensus       341 s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~  419 (656)
                      +..+.....|+-+|+|++++||.++..+++.+|+|.=|++..........         ....+.. .....+...  .+
T Consensus       132 s~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~---------~~~ev~k~~~~~~k~~r--~~  200 (479)
T KOG0299|consen  132 SSDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYII---------ERDEVLKSHGNPLKESR--KG  200 (479)
T ss_pred             cccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCccccccc---------ccchhhhhccCCCCccc--cc
Confidence            33455667888899999999999999999999999999987643221000         0000000 001111111  48


Q ss_pred             CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~  499 (656)
                      |...|.+++.|+||++|++|+.|..|.||+.++.+.+..+++|...|.+++|-...+.+++++.|+++++|+++....+.
T Consensus       201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve  280 (479)
T KOG0299|consen  201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE  280 (479)
T ss_pred             ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                      ++.+|.+.|..+.-..-++.+-+|+.|+++++|++ ......+|.+|.+.+-|++|-.+ ..+++|+.+|.|.+|++.+.
T Consensus       281 tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  281 TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             HHhCCccceeeechhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence            99999999999998888888888889999999999 44555678899999999999854 68899999999999999998


Q ss_pred             eeeEeee-CCC-----------ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          580 RCVTPLM-GHT-----------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       580 ~~~~~~~-~h~-----------~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      +++.... .|.           ..|++++..|...++++|+.+|+|++|.+..+-.
T Consensus       359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence            8887764 232           2689999999999999999999999999988743

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=6.2e-27  Score=247.26  Aligned_cols=254  Identities=21%  Similarity=0.419  Sum_probs=224.2

Q ss_pred             eeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc
Q 006220          342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (656)
Q Consensus       342 ~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~  421 (656)
                      +.-+++.+|...|.++++|.|...+++| ..+.|+||+..+..                            ..+++.  .
T Consensus       364 ~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~k----------------------------ciRTi~--~  412 (888)
T KOG0306|consen  364 TSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLK----------------------------CIRTIT--C  412 (888)
T ss_pred             cceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcc----------------------------eeEEec--c
Confidence            3457889999999999999999988888 67789999987632                            233332  2


Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC-----Cc
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-----IQ  496 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~-----~~  496 (656)
                      +-+.+..|-|.++++++|...|.+.+||+.+...+..++.|.+.||+++.+|++..+++||.|.+|++||..-     +.
T Consensus       413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt  492 (888)
T KOG0306|consen  413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT  492 (888)
T ss_pred             ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence            4788999999999999999999999999999999999999999999999999999999999999999999741     11


Q ss_pred             ee--------EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220          497 PL--------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       497 ~~--------~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      ..        +++ .-...|.|+.++|+|++|+++--|.+|.+|-+.+-+..-.+-||.-||.||..|||++.++||+.|
T Consensus       493 ~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSAD  571 (888)
T KOG0306|consen  493 QKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSAD  571 (888)
T ss_pred             cceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCC
Confidence            11        122 234789999999999999999999999999999999998999999999999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      ..|+||-+.-|.|-+.+.+|...|.++.|-|....+.++|.|+.|+-||-..-+.++..
T Consensus       572 KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L  630 (888)
T KOG0306|consen  572 KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL  630 (888)
T ss_pred             CceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee
Confidence            99999999999999999999999999999999999999999999999998776655444

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3e-27  Score=221.24  Aligned_cols=205  Identities=28%  Similarity=0.434  Sum_probs=181.3

Q ss_pred             CccCEEEEEEccCCC-EEEEEeCCCeEEEEeccC-CceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCc
Q 006220          420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ  496 (656)
Q Consensus       420 h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~  496 (656)
                      -...++.++|++... .+++++.||++++||+.- ..++..++.|...|.++.|++ .+..++++|.|++|++|+...++
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            457899999999764 788999999999999643 346788999999999999999 56678999999999999999999


Q ss_pred             eeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEEECCCcEEEE
Q 006220          497 PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMW  574 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~L~s~~~dg~I~iw  574 (656)
                      .+.++.+|.+-|...+|+| ..+.++++|.|+++++||++.......+..|...|.|+.|+. +.+.|+||+.|+.|++|
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w  218 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW  218 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence            9999999999999999998 578999999999999999997555555889999999999998 56789999999999999


Q ss_pred             eCCCC-eeeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCce
Q 006220          575 DLASG-RCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       575 D~~~~-~~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      |+++. .++..+.+|.-.|..+.|||. ..+|++++.|-+++|||...+...
T Consensus       219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~  270 (311)
T KOG0277|consen  219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA  270 (311)
T ss_pred             ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence            99875 467888999999999999995 568999999999999999866543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=2.9e-28  Score=241.99  Aligned_cols=263  Identities=23%  Similarity=0.330  Sum_probs=228.7

Q ss_pred             CCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE
Q 006220          337 AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL  416 (656)
Q Consensus       337 ~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (656)
                      ..+|+.+.+.+..|.+.+..+.|-++...|++|+.|..|++|+....+                          ......
T Consensus       161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--------------------------~~~~~t  214 (459)
T KOG0288|consen  161 DTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--------------------------SELIST  214 (459)
T ss_pred             cccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch--------------------------hhhhhh
Confidence            356888888889999999999999999999999999999999987522                          124456


Q ss_pred             eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (656)
Q Consensus       417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~  496 (656)
                      +.|..++|+++.|.+++.++++++.|+.+++|+++..+...++.+|+..|+++.|......+++|+.|.+|++||+....
T Consensus       215 LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~  294 (459)
T KOG0288|consen  215 LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY  294 (459)
T ss_pred             hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence            77788999999999999999999999999999999999999999999999999999877779999999999999999988


Q ss_pred             eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      +.+.+.. .+.+..|..+  ...+++|-.|++||+||++++.+++....+. .|+++..+++|..|.+++.|.++.+.|+
T Consensus       295 C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDl  370 (459)
T KOG0288|consen  295 CSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDL  370 (459)
T ss_pred             eeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeec
Confidence            8876653 3455566654  4568889999999999999999999988764 8999999999999999999999999999


Q ss_pred             CCCeeeEeeeCC----CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220          577 ASGRCVTPLMGH----TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       577 ~~~~~~~~~~~h----~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      ++......+...    ....+.+.|||++.|+++||.||.|+||++.+++.......
T Consensus       371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~  427 (459)
T KOG0288|consen  371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL  427 (459)
T ss_pred             ccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc
Confidence            998887777632    23478899999999999999999999999999887654433

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.8e-27  Score=218.19  Aligned_cols=211  Identities=27%  Similarity=0.479  Sum_probs=196.7

Q ss_pred             eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~  492 (656)
                      ....+..|.++|..+.|+-+|++.++|+.|.+|++|+...+.++++|.+|...|.+++.+.++..|++|+.|+.+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC--CeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCc
Q 006220          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (656)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~--~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~  570 (656)
                      .+++.++.+.+|...|+.++|+.+...+++|+.|.++++||.++  .++++++......|.++..+  +..|++|+.||+
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt  166 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT  166 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence            99999999999999999999999999999999999999999986  46788888888889999887  678999999999


Q ss_pred             EEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       571 I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      ++.||++.|+....+.+|  +|++++|+++++....++.|+++++.|-.+++.+...
T Consensus       167 vRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY  221 (307)
T KOG0316|consen  167 VRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY  221 (307)
T ss_pred             EEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHh
Confidence            999999999988777665  7999999999999999999999999999998866544

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.8e-27  Score=238.96  Aligned_cols=247  Identities=25%  Similarity=0.394  Sum_probs=206.7

Q ss_pred             eeCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          348 INTHNGLNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      ...++.|++++|||...+ +|+. ..-.+.||+..+..                            ....+......|++
T Consensus        23 ~ke~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~----------------------------~~k~~srFk~~v~s   73 (487)
T KOG0310|consen   23 HKEHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRS----------------------------VRKTFSRFKDVVYS   73 (487)
T ss_pred             ccccCcceeEecCCCCCCceEEe-cccEEEEEecchhh----------------------------hhhhHHhhccceeE
Confidence            455678999999997554 4443 45678999876421                            12223345678999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (656)
Q Consensus       427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~  505 (656)
                      +.|-.||++|+.|...|.|+++|+.+...+..+.+|+.||..+.|+|. +..|++|+.|+.+++||+.+......+.+|.
T Consensus        74 ~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht  153 (487)
T KOG0310|consen   74 VDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT  153 (487)
T ss_pred             EEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc
Confidence            999999999999999999999998876778889999999999999995 5567888899999999999988766888999


Q ss_pred             CCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eee
Q 006220          506 SDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCV  582 (656)
Q Consensus       506 ~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~-~~~  582 (656)
                      ..|.|.+|+| ++..++||+.||+|++||++.. ..+..+ .|..+|..+.+-|.|..|++++. ..|++||+.+| +.+
T Consensus       154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLL  231 (487)
T ss_pred             ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceeh
Confidence            9999999998 4568899999999999999987 555555 59999999999999999999875 68999999855 455


Q ss_pred             EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       583 ~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      ..+..|...|+|+++..+++.|+|||-|+.|++||+.+-+.+.
T Consensus       232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~  274 (487)
T KOG0310|consen  232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH  274 (487)
T ss_pred             hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE
Confidence            5555699999999999999999999999999999977655443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=7e-28  Score=224.73  Aligned_cols=249  Identities=25%  Similarity=0.435  Sum_probs=212.1

Q ss_pred             EEeeCCCCeEEEEEc---CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          346 TFINTHNGLNCASIS---QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs---~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      +-.+|..+|-.++||   |+|-+|++++.||.-.+-+=                            ..+..+-++.||.+
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g----------------------------~tgdwigtfeghkg   60 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNG----------------------------DTGDWIGTFEGHKG   60 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccC----------------------------CCCCcEEeeeccCc
Confidence            347899999999998   58999999999886543332                            22446678899999


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc-eeEEe
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-PLRIM  501 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~-~~~~~  501 (656)
                      .|++...+.+...-++++.|-+-++||.-++..+..+. |..-|..++|+.+.++|++|+.+..+++||++..+ +...+
T Consensus        61 avw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~  139 (334)
T KOG0278|consen   61 AVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI  139 (334)
T ss_pred             ceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh
Confidence            99999999888888999999999999999999998886 88899999999999999999999999999998764 56778


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC--------------------------------
Q 006220          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM--------------------------------  549 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~--------------------------------  549 (656)
                      .+|.+.|..+.|....+.|++++.|++||+||.+++..+..+.. ..+                                
T Consensus       140 ~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~l  218 (334)
T KOG0278|consen  140 SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLL  218 (334)
T ss_pred             cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCceeEEeccccccce
Confidence            89999999999999999999999999999999999988876641 222                                


Q ss_pred             --------eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee-eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          550 --------ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL-MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       550 --------i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                              |.+...+|+...+++|++|+.++.||..+|..+..+ ++|.++|.|+.|+|+|...++|+.||+|++|.+..
T Consensus       219 Ks~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  219 KSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             eeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence                    334455666666777778888888888888888775 79999999999999999999999999999999987


Q ss_pred             CCce
Q 006220          621 STKV  624 (656)
Q Consensus       621 ~~~~  624 (656)
                      ++..
T Consensus       299 ~~~~  302 (334)
T KOG0278|consen  299 GKTY  302 (334)
T ss_pred             CCch
Confidence            6653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-25  Score=206.43  Aligned_cols=258  Identities=22%  Similarity=0.320  Sum_probs=216.8

Q ss_pred             CCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220          338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (656)
Q Consensus       338 ~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  417 (656)
                      ..|++.+..-..|.+.|.|.+|||+|.++|+|+.|.+|++.-++......+                       ..-..+
T Consensus        76 ~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~-----------------------g~dle~  132 (350)
T KOG0641|consen   76 QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT-----------------------GHDLEF  132 (350)
T ss_pred             CCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc-----------------------Ccceee
Confidence            345777777788889999999999999999999999999988764222211                       112335


Q ss_pred             ecCccCEEEEEEccC----CCEEEEEe-CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220          418 QGHSGPVYSASFSPL----GDFILSSS-ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (656)
Q Consensus       418 ~~h~~~V~~l~~spd----~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~  492 (656)
                      .-|.+.|..++|-.+    +..|++++ .|..|++-|..+++....+.+|++.|..+ ++-+|-+|++|+.|.+|++||+
T Consensus       133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdl  211 (350)
T KOG0641|consen  133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDL  211 (350)
T ss_pred             eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEee
Confidence            669999999999653    34677655 47788888999999999999999999876 3446889999999999999999


Q ss_pred             CCCceeEEecC-------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220          493 DRIQPLRIMAG-------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       493 ~~~~~~~~~~~-------~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~  565 (656)
                      +-..+++.+..       ..+.|.+++..|.|+.|++|-.|..+.+||++.+..++.|..|...|.|+.|||...|+++|
T Consensus       212 rv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~  291 (350)
T KOG0641|consen  212 RVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC  291 (350)
T ss_pred             eccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe
Confidence            98888887652       23679999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCcEEEEeCCCC----eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          566 DEDGTIMMWDLASG----RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       566 ~~dg~I~iwD~~~~----~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      +.|..|++-|+.-.    -++.....|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus       292 syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  292 SYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             cccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999999998532    2233345788888999999999899999999999999764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.6e-25  Score=205.88  Aligned_cols=267  Identities=23%  Similarity=0.396  Sum_probs=218.5

Q ss_pred             ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC
Q 006220          341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (656)
Q Consensus       341 s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  420 (656)
                      ...+.+.+.....|.+++|+|.|.+.|+|+...+++|.............  +     .      ........+.....|
T Consensus        22 ~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~h--e-----a------~~~pp~v~~kr~khh   88 (350)
T KOG0641|consen   22 HFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAH--E-----A------AKQPPSVLCKRNKHH   88 (350)
T ss_pred             ceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCccccc--c-----c------ccCCCeEEeeecccc
Confidence            33455667777889999999999999999999999998765321110000  0     0      000112345566789


Q ss_pred             ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee-----EEeeCCCccEEEEEEec----CCCEEEEEE-CCCcEEEE
Q 006220          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-----VCYKGHNYPVWDVQFNP----QGHYFASSS-HDRTARIW  490 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~-----~~~~~h~~~V~~l~~sp----~~~~l~sgs-~Dg~i~lw  490 (656)
                      .+.|+|.+|||+|.++++|+.|.+|++...+...+.     ..+.-|.+.|.+++|-.    .+..+++++ .|..|++-
T Consensus        89 kgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t  168 (350)
T KOG0641|consen   89 KGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT  168 (350)
T ss_pred             CccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence            999999999999999999999999999876654432     45677999999999975    356677766 67888888


Q ss_pred             ECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec-------CCCCeEEEEEcCCCCEEE
Q 006220          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-------HRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~-------h~~~i~~l~~sp~g~~L~  563 (656)
                      |..+++....+.+|.+.|.++ ++=++-.+++|+.|.+||+||++-..+++++..       ..+.|.+++..|.|++|+
T Consensus       169 dc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~  247 (350)
T KOG0641|consen  169 DCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA  247 (350)
T ss_pred             ecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence            999999999999999999876 234688999999999999999999999987642       235799999999999999


Q ss_pred             EEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       564 s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      +|..|.+..+||++-++.+..+..|+..|.++.|||...++.+++.|..|++-|+...
T Consensus       248 sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  248 SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            9999999999999999999999999999999999999999999999999999998653

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.1e-26  Score=256.10  Aligned_cols=268  Identities=24%  Similarity=0.432  Sum_probs=224.3

Q ss_pred             EEeeCC-CCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          346 TFINTH-NGLNCASISQDGSLVAGGF--SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       346 ~~~~~~-~~V~~l~fs~dg~~La~g~--~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      ++.+|+ ..|.+++.+|||..+|+|+  .||.++||+..........            .+   . ...........|.+
T Consensus         7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~------------~~---~-~l~k~l~~m~~h~~   70 (942)
T KOG0973|consen    7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE------------KN---E-NLPKHLCTMDDHDG   70 (942)
T ss_pred             cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhh------------hh---c-ccchhheeeccccC
Confidence            344554 4599999999999999999  8999999998752111000            00   0 01345566778999


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccC------------------CceeEEeeCCCccEEEEEEecCCCEEEEEECC
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKL------------------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~------------------~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D  484 (656)
                      .|.|+.|+|||++|++||.|+.|.+|....                  ++++..+.+|...|.+++|+|++.++++++.|
T Consensus        71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D  150 (942)
T KOG0973|consen   71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD  150 (942)
T ss_pred             ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc
Confidence            999999999999999999999999998762                  23567789999999999999999999999999


Q ss_pred             CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC------CCeEEEEEcCC
Q 006220          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------SMILSLAMSPD  558 (656)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~------~~i~~l~~sp~  558 (656)
                      ++|.+|+..+.+.+..+.+|.+.|..+.|.|-|+|||+-+.|++|++|++.+....+.+.++-      ..+..+.||||
T Consensus       151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD  230 (942)
T KOG0973|consen  151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD  230 (942)
T ss_pred             ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence            999999999999999999999999999999999999999999999999988887877776543      35788999999


Q ss_pred             CCEEEEEE----CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcC-----CCC------------EEEEEECCCcEEEEe
Q 006220          559 GRYMASGD----EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC-----EGS------------LLASGSADCTVKLWD  617 (656)
Q Consensus       559 g~~L~s~~----~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~-----~~~------------~l~sgs~Dg~I~iWd  617 (656)
                      |.+|++..    .-.++.|.+-.+.+.-..+-||.+++.++.|+|     ...            .+|+|+.|++|.||.
T Consensus       231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~  310 (942)
T KOG0973|consen  231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN  310 (942)
T ss_pred             cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence            99999853    334789999888888889999999999999998     111            789999999999999


Q ss_pred             CCCCCceeeccc
Q 006220          618 VTTSTKVLKTEE  629 (656)
Q Consensus       618 ~~~~~~~~~~~~  629 (656)
                      ....+++....+
T Consensus       311 T~~~RPl~vi~~  322 (942)
T KOG0973|consen  311 TALPRPLFVIHN  322 (942)
T ss_pred             cCCCCchhhhhh
Confidence            988777665543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=4.3e-27  Score=233.65  Aligned_cols=260  Identities=22%  Similarity=0.333  Sum_probs=222.4

Q ss_pred             HHhccceecCCCCCCcee-EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220          326 EDLRNRVHLSSAALPSVS-FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (656)
Q Consensus       326 ~~~~~~v~l~~~~~ps~~-~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (656)
                      ......|++|+....... .-++.+..++|+++.|.+++.++++.+.|+.+++|++..                      
T Consensus       193 gg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~----------------------  250 (459)
T KOG0288|consen  193 GGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS----------------------  250 (459)
T ss_pred             cchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc----------------------
Confidence            345567788876554422 234566778899999999999999999999999999875                      


Q ss_pred             cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC
Q 006220          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (656)
Q Consensus       405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D  484 (656)
                            .+...++.||++.|+++.|......+++|+.|.+|++||+....|...+- ..+.+.+|+.+  ...+++|..|
T Consensus       251 ------~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~D  321 (459)
T KOG0288|consen  251 ------LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFD  321 (459)
T ss_pred             ------hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccc
Confidence                  34556788999999999999877779999999999999999887776654 34456667665  5678999999


Q ss_pred             CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC----CCCeEEEEEcCCCC
Q 006220          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH----RSMILSLAMSPDGR  560 (656)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h----~~~i~~l~~sp~g~  560 (656)
                      ++|++||.++..+.+....+ +.|+++..++++..+.+++.|.++.+.|+++.+....+...    .+..+.+.|||++.
T Consensus       322 kkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~  400 (459)
T KOG0288|consen  322 KKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS  400 (459)
T ss_pred             cceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence            99999999999999999877 49999999999999999999999999999999888877642    23478899999999


Q ss_pred             EEEEEECCCcEEEEeCCCCeeeEeeeCCCc--cEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTS--CVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       561 ~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~--~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      |+++|+.||.|+||++.++++...+.....  .|++++|+|.|..|++++.++.+.+|.
T Consensus       401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            999999999999999999999998876553  599999999999999999999999993

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.7e-27  Score=244.89  Aligned_cols=240  Identities=22%  Similarity=0.395  Sum_probs=213.8

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe
Q 006220          361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS  440 (656)
Q Consensus       361 ~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s  440 (656)
                      |.+++|.+|+.||.|++|+.........                      ......+..|+..|..+....+++.|+|||
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s----------------------~~~~asme~HsDWVNDiiL~~~~~tlIS~S   92 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPS----------------------TPYIASMEHHSDWVNDIILCGNGKTLISAS   92 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcc----------------------cchhhhhhhhHhHHhhHHhhcCCCceEEec
Confidence            5688999999999999999875221110                      112445678999999999999999999999


Q ss_pred             CCCeEEEEeccCC--ceeEEeeCCCccEEEEEE-ecCCCEEEEEECCCcEEEEECCCCce----------eEEec-CCCC
Q 006220          441 ADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQF-NPQGHYFASSSHDRTARIWSMDRIQP----------LRIMA-GHLS  506 (656)
Q Consensus       441 ~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~l~~-sp~~~~l~sgs~Dg~i~lwd~~~~~~----------~~~~~-~~~~  506 (656)
                      .|.+|++|+...+  -+..++..|...|.|+++ -++...+|+||-|+.|.+||+.++..          ...+. |+..
T Consensus        93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~  172 (735)
T KOG0308|consen   93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD  172 (735)
T ss_pred             CCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence            9999999999877  577788899999999999 77889999999999999999986621          22233 7888


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee
Q 006220          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~  586 (656)
                      .|.+++.+++|..|++|+..+.+++||.++++.+..+.||+..|.++..++||..++++++||+|++||+...+|+.++.
T Consensus       173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~  252 (735)
T KOG0308|consen  173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI  252 (735)
T ss_pred             ceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       587 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      .|...||++..+|+-..+.+|+.||.|..=|+.+..
T Consensus       253 vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  253 VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             eccCceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence            999999999999999999999999999999998853

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=7.1e-26  Score=217.02  Aligned_cols=261  Identities=19%  Similarity=0.301  Sum_probs=208.3

Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          351 HNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       351 ~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      .+.|.+++||| ...++++|+.||+||+|+++..+..                          .-+....|.++|.+++|
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~--------------------------~~ka~~~~~~PvL~v~W   80 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL--------------------------VPKAQQSHDGPVLDVCW   80 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcc--------------------------cchhhhccCCCeEEEEE
Confidence            46799999999 5667779999999999999852111                          11334569999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC--EEEEEECCCcEEEEECCCCceeEEecCCCCC
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~  507 (656)
                      +.||..+++|+.|+.+++||+.++ .+..+..|..+|.++.|-+...  .|+|||.|.+|+.||++...++..+.-. ..
T Consensus        81 sddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eR  158 (347)
T KOG0647|consen   81 SDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ER  158 (347)
T ss_pred             ccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ce
Confidence            999999999999999999999988 4555677999999999998665  7999999999999999999998887633 55


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE--ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC--eeeE
Q 006220          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG--RCVT  583 (656)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~--~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~--~~~~  583 (656)
                      +.++..  -...++++..++.|.+|+++++......  ..-.-.+.|++..++....+.|+-+|.+.|..+..+  +.-.
T Consensus       159 vYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF  236 (347)
T KOG0647|consen  159 VYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF  236 (347)
T ss_pred             eeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence            666544  3457888999999999999876443211  112335889999999888899999999999999876  4444


Q ss_pred             eeeCCC---------ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEE
Q 006220          584 PLMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQV  654 (656)
Q Consensus       584 ~~~~h~---------~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~F  654 (656)
                      +++.|.         -.|.+++|+|.-..|+++|.||++.+||-....               .|.+++++.-||.++.|
T Consensus       237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~---------------kLk~s~~~~qpItcc~f  301 (347)
T KOG0647|consen  237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART---------------KLKTSETHPQPITCCSF  301 (347)
T ss_pred             eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh---------------hhhccCcCCCccceeEe
Confidence            555554         257889999999999999999999999976644               34566777778888777


Q ss_pred             cC
Q 006220          655 LR  656 (656)
Q Consensus       655 tr  656 (656)
                      ++
T Consensus       302 n~  303 (347)
T KOG0647|consen  302 NR  303 (347)
T ss_pred             cC
Confidence            64

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=9.7e-26  Score=221.10  Aligned_cols=174  Identities=21%  Similarity=0.447  Sum_probs=164.1

Q ss_pred             eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~  492 (656)
                      ....+..|+++|++++.+|+.+++++|+.|..-.+|++.++.....+.+|...|.++.|+.+|.+||||+.+|.|++|..
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (656)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~  572 (656)
                      .++.....+......+.-+.|||.+..|++|+.||.+.+|.+.++...+.+.||..++++=.|.|+|+.++++..||+|+
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~  215 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII  215 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence            99998888877778999999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             EEeCCCCeeeEeee
Q 006220          573 MWDLASGRCVTPLM  586 (656)
Q Consensus       573 iwD~~~~~~~~~~~  586 (656)
                      +|+..+++++..+.
T Consensus       216 ~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  216 VWNPKTGQPLHKIT  229 (399)
T ss_pred             EEecCCCceeEEec
Confidence            99999987776653

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=6e-25  Score=240.60  Aligned_cols=248  Identities=13%  Similarity=0.217  Sum_probs=191.8

Q ss_pred             ceecCCCCCCceeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCC
Q 006220          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (656)
Q Consensus       331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (656)
                      .+++|.... ..+...+.+|.+.|.+++|+|+ +.+||+|+.||.|+||++........                    .
T Consensus        55 vI~L~~~~r-~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--------------------~  113 (568)
T PTZ00420         55 AIRLENQMR-KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--------------------E  113 (568)
T ss_pred             EEEeeecCC-CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--------------------c
Confidence            455664332 2345678899999999999997 89999999999999999874211000                    0


Q ss_pred             CceeeEEeecCccCEEEEEEccCCCE-EEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220          410 RKRSYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       410 ~~~~~~~l~~h~~~V~~l~~spd~~~-L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                      .......+.+|.+.|.+++|+|++.. |++|+.|++|++||+.++..+..+. |...|.+++|+|+|.+|++++.|+.|+
T Consensus       114 i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~Ir  192 (568)
T PTZ00420        114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMH  192 (568)
T ss_pred             cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEE
Confidence            01133457789999999999999876 5789999999999999988777665 567899999999999999999999999


Q ss_pred             EEECCCCceeEEecCCCCCeeE-----EEEcCCCCEEEEEECCC----cEEEEeCCC-CeeEEEEecC--CCCeEEEEEc
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDC-----VRWHINCNYIATGSSDK----TVRLWDVSS-GECVRIFIGH--RSMILSLAMS  556 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~-----v~~~p~~~~l~tgs~dg----~V~iwd~~~-~~~~~~~~~h--~~~i~~l~~s  556 (656)
                      +||+++++.+..+.+|.+.+.+     ..|++++.+|++++.|+    +|+|||+++ +.++..+..+  .+.+......
T Consensus       193 IwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~  272 (568)
T PTZ00420        193 IIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE  272 (568)
T ss_pred             EEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC
Confidence            9999999999999999876543     33458889999988764    799999995 5666554432  3334444445


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCeeeEeee--CCCccEEEEEEcCCC
Q 006220          557 PDGRYMASGDEDGTIMMWDLASGRCVTPLM--GHTSCVWTLAYSCEG  601 (656)
Q Consensus       557 p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~--~h~~~V~~l~~s~~~  601 (656)
                      ++|.++++|+.|+.|++|++..+. +..+.  .+..++.+++|.|..
T Consensus       273 ~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        273 STGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             CCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence            678999999999999999998764 33332  255788899999964

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=7.7e-26  Score=213.23  Aligned_cols=210  Identities=28%  Similarity=0.408  Sum_probs=191.6

Q ss_pred             EeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 006220          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI  495 (656)
Q Consensus       416 ~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~  495 (656)
                      .++||..|++.+.++.+|.+|++|+.|.++.+|-..+|+.+-+|.||.+.|||+..+.+..++++|+.|.++++||+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46789999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             ceeEEecCCCCCeeEEEEcCCCCEEEEEEC-----CCcEEEEeCC-------CCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVS-------SGECVRIFIGHRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-----dg~V~iwd~~-------~~~~~~~~~~h~~~i~~l~~sp~g~~L~  563 (656)
                      +.+..+. ...+|..+.|++.|++++..+.     .+.|.++|++       ..++...+..+.+.++.+-|+|-+++|+
T Consensus        85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii  163 (327)
T KOG0643|consen   85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII  163 (327)
T ss_pred             cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence            9999887 4578999999999999887764     3689999998       4566788888889999999999999999


Q ss_pred             EEECCCcEEEEeCCCCee-eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220          564 SGDEDGTIMMWDLASGRC-VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       564 s~~~dg~I~iwD~~~~~~-~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                      +|.+||.|.+||+++|.. +.....|...|+.+.+++|..++++++.|.+-++||+.+-..+..
T Consensus       164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt  227 (327)
T KOG0643|consen  164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT  227 (327)
T ss_pred             EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence            999999999999999854 445578999999999999999999999999999999988665443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4.9e-27  Score=229.63  Aligned_cols=248  Identities=20%  Similarity=0.407  Sum_probs=201.3

Q ss_pred             EeeCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          347 FINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      +-+|.++|.|++=+|.. ..+|+|+.||.|+|||+..                            ......+..|.|.|.
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq----------------------------R~~~~~f~AH~G~V~  113 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ----------------------------RECIRTFKAHEGLVR  113 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhh----------------------------hhhhheeecccCcee
Confidence            47899999999999987 8899999999999999985                            334566788889999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccC--------------------------------------CceeEEeeCCCccEE
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKL--------------------------------------NANLVCYKGHNYPVW  467 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~--------------------------------------~~~~~~~~~h~~~V~  467 (656)
                      ++++..  ..+++++.|.+|+.|.++.                                      ..++..+.-....|.
T Consensus       114 Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~  191 (433)
T KOG0268|consen  114 GICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSIS  191 (433)
T ss_pred             eEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCcee
Confidence            988875  6678888888888887431                                      111222222234467


Q ss_pred             EEEEecC-CCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeEEEEec
Q 006220          468 DVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIG  545 (656)
Q Consensus       468 ~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~  545 (656)
                      ++.|+|. ...|++|+.|+.|.+||+++.+|+..+. -...-+.++|+|++-.+++|+.|..++.||++.- .++....+
T Consensus       192 svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d  270 (433)
T KOG0268|consen  192 SVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD  270 (433)
T ss_pred             EEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcc
Confidence            7788884 4567888899999999999999988765 3355678999998888899999999999999864 57788899


Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC-CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       546 h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      |.+.|.++.|||.|+-+++|+.|.+|+||..+.+..--.+..- -..|.++.||.|.++++|||.|+.|++|.....+++
T Consensus       271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence            9999999999999999999999999999999877644333211 156999999999999999999999999998776654


Q ss_pred             e
Q 006220          625 L  625 (656)
Q Consensus       625 ~  625 (656)
                      -
T Consensus       351 g  351 (433)
T KOG0268|consen  351 G  351 (433)
T ss_pred             C
Confidence            3

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=8.3e-26  Score=229.70  Aligned_cols=279  Identities=20%  Similarity=0.359  Sum_probs=211.4

Q ss_pred             CCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc-cccCC-CCCCC-------CC---------
Q 006220          339 LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAV-SSGLQ-GENDT-------TP---------  400 (656)
Q Consensus       339 ~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~-~~~~~-~~~~~-------~~---------  400 (656)
                      +|..+...+.+|...|+++++.|.|..|++|+-|-+|++||+........ ...++ .+...       ..         
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg  234 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG  234 (641)
T ss_pred             CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence            46666778888889999999999999999999999999999986432111 01111 11000       00         


Q ss_pred             --CccccCCCCC-----------ceeeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCce-eEEee-----
Q 006220          401 --REDIIGPNGR-----------KRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN-LVCYK-----  460 (656)
Q Consensus       401 --~~~~~~~~~~-----------~~~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~-~~~~~-----  460 (656)
                        ...++..++.           ........||...++|.+|+|+.+ .+++|+.||++|+|++..... ...++     
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence              0011111111           111223568999999999999875 789999999999999986543 23332     


Q ss_pred             CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc--ee-EEecCCCC--CeeEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PL-RIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVS  535 (656)
Q Consensus       461 ~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~--~~-~~~~~~~~--~V~~v~~~p~~~~l~tgs~dg~V~iwd~~  535 (656)
                      +..-++..++|+++|..||+|+.||.|.+|+.....  +. ..-..|..  .|+||+|+++|++|++-+.|+++++||++
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            234578999999999999999999999999975432  22 23346776  89999999999999999999999999999


Q ss_pred             CC-eeEEEEecCC--CCeEEEEEcCCCCEEEEEE------CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEE
Q 006220          536 SG-ECVRIFIGHR--SMILSLAMSPDGRYMASGD------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS  606 (656)
Q Consensus       536 ~~-~~~~~~~~h~--~~i~~l~~sp~g~~L~s~~------~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s  606 (656)
                      +. +++.++.+-.  -+-+.++|||+.++|++|+      ..|.+.+||..+...+.++.-.+..|..+.|+|.-+.|+.
T Consensus       395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~  474 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFA  474 (641)
T ss_pred             ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheee
Confidence            75 5566555433  3567889999999999986      3578999999999999988877888999999999888999


Q ss_pred             EECCCcEEEEe
Q 006220          607 GSADCTVKLWD  617 (656)
Q Consensus       607 gs~Dg~I~iWd  617 (656)
                      |+.||+++||-
T Consensus       475 gsgdG~~~vyY  485 (641)
T KOG0772|consen  475 GSGDGTAHVYY  485 (641)
T ss_pred             ecCCCceEEEE
Confidence            99999999864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=3.6e-25  Score=221.13  Aligned_cols=247  Identities=21%  Similarity=0.352  Sum_probs=217.9

Q ss_pred             EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      +.++.+|...|+.+.|+++...+++++.|..|+||.....                            ........|.++
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~----------------------------s~~~~~~~h~~~  305 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS----------------------------SEPTSSRPHEEP  305 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc----------------------------cCcccccccccc
Confidence            3467888999999999999999999999999999997641                            123445679999


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC--CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      |+.+..+|.|.||++++.||+..+.|++++.++.....  ..-.+++.+|+|||..|.+|+.||.+++||+..+..+..|
T Consensus       306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F  385 (506)
T KOG0289|consen  306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF  385 (506)
T ss_pred             ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence            99999999999999999999999999999988776654  3345899999999999999999999999999999999999


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-CCeEEEEEcCCCCEEEEEECCCcEEEEeC--CC
Q 006220          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDL--AS  578 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g~~L~s~~~dg~I~iwD~--~~  578 (656)
                      .+|.++|..++|+.||-||++++.|+.|++||+|.-+...++.-.. ..+.++.|.+.|.+|+.++.|=.|++++-  .+
T Consensus       386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~  465 (506)
T KOG0289|consen  386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS  465 (506)
T ss_pred             CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence            9999999999999999999999999999999999988877776433 36999999999999999988766666662  36


Q ss_pred             CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      +.++..+..|.+..+++.|....++++++|.|..++++.+
T Consensus       466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            7788888889999999999999999999999999988765

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.7e-25  Score=214.99  Aligned_cols=247  Identities=25%  Similarity=0.450  Sum_probs=217.4

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+.+|.++|+.++-......+.+++.|.+-+||.+..                            +.....+.||.+.|.
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es----------------------------g~CL~~Y~GH~GSVN  194 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES----------------------------GACLATYTGHTGSVN  194 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeecc----------------------------ccceeeeccccccee
Confidence            4678999999999988888999999999999999986                            446677899999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEec------c------------------------------C----CceeEEeeCCCcc
Q 006220          426 SASFSPLGDFILSSSADTTIRLWST------K------------------------------L----NANLVCYKGHNYP  465 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~------~------------------------------~----~~~~~~~~~h~~~  465 (656)
                      +++|++.+.++++++.|++-.||..      .                              .    ..++..+.+|...
T Consensus       195 sikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v  274 (481)
T KOG0300|consen  195 SIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV  274 (481)
T ss_pred             eEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc
Confidence            9999999999999999999999961      0                              0    0124567889999


Q ss_pred             EEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeEEEEe
Q 006220          466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFI  544 (656)
Q Consensus       466 V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~  544 (656)
                      |.+..|-..|..+++++.|++..+||++++.++..+.||....+.++-||+.+++++++.|.+.|+||.+.. ..+..|.
T Consensus       275 V~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ  354 (481)
T KOG0300|consen  275 VSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ  354 (481)
T ss_pred             eEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec
Confidence            999999999999999999999999999999999999999999999999999999999999999999999853 5688999


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       545 ~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~-~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ||...|+++.|..+ ..+++|+.|.+|++||+++.+ ++.+++ -.++++.++.+..+.+++.--.+..|++||+....
T Consensus       355 GHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R  431 (481)
T KOG0300|consen  355 GHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR  431 (481)
T ss_pred             ccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence            99999999999876 468899999999999998764 555554 35678999999988899988888999999997644

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=1.4e-25  Score=215.07  Aligned_cols=215  Identities=26%  Similarity=0.469  Sum_probs=188.2

Q ss_pred             eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccC------------C------ceeEEeeCCCccEEEEEEecC
Q 006220          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL------------N------ANLVCYKGHNYPVWDVQFNPQ  474 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~------------~------~~~~~~~~h~~~V~~l~~sp~  474 (656)
                      ....+..|.+++.+.+|+|||.++++||.|..|+|.|+..            +      -.+.++-.|..+|.++.|+|.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            4456778999999999999999999999999999999761            1      124566679999999999999


Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEec--CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE---ecCCCC
Q 006220          475 GHYFASSSHDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF---IGHRSM  549 (656)
Q Consensus       475 ~~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~---~~h~~~  549 (656)
                      ...|++|+.|++|+++|+......+-+.  ....+|.++.|||.|.+|++|+.-.++++||+.+.+|...-   .+|.+.
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a  263 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA  263 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence            9999999999999999998654443332  24568999999999999999999999999999998886543   368899


Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-CCC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       550 i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      |+++.+|+.|++.++|+.||.|+|||--+++|+.++. .|. ..|.+..|..+|+++++.|.|..+++|.+.++..+...
T Consensus       264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence            9999999999999999999999999999999999886 566 67999999999999999999999999999999887655

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=6.2e-25  Score=230.78  Aligned_cols=254  Identities=23%  Similarity=0.407  Sum_probs=215.3

Q ss_pred             ceecCCCCCCcee-EEEEeeCCCCeEE-EEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220          331 RVHLSSAALPSVS-FYTFINTHNGLNC-ASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (656)
Q Consensus       331 ~v~l~~~~~ps~~-~~~~~~~~~~V~~-l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (656)
                      .+++|........ ...+.++.+-|.+ +++-+ ++-.+++|+.|++|.+|.+..                         
T Consensus        36 t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~-------------------------   90 (745)
T KOG0301|consen   36 TVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ-------------------------   90 (745)
T ss_pred             ceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC-------------------------
Confidence            4666765333222 2345667777777 88875 455699999999999999875                         


Q ss_pred             CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcE
Q 006220          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (656)
Q Consensus       408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i  487 (656)
                         ..++..+.||...|.|++...++. ++|||.|.++++|..  +++...+.+|+.+||.+..-|++ .++|||.|.+|
T Consensus        91 ---~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI  163 (745)
T KOG0301|consen   91 ---AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI  163 (745)
T ss_pred             ---CCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence               345677899999999999887777 999999999999987  46667789999999999999987 89999999999


Q ss_pred             EEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      ++|.-  ++.+++|.+|..-|..+++-+++ .+++++.||.|++|++ +|+++..+.+|+.-|.++...+++..++++++
T Consensus       164 klWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE  239 (745)
T KOG0301|consen  164 KLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE  239 (745)
T ss_pred             eeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence            99986  67889999999999999998765 5788999999999998 89999999999999999998889999999999


Q ss_pred             CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       568 dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      |++++||+..  .+.+.+......||++.+-++|. +++|++||.||||.......
T Consensus       240 DrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~  292 (745)
T KOG0301|consen  240 DRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK  292 (745)
T ss_pred             CceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence            9999999975  77887776777999999988886 67788999999999885443

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.2e-25  Score=207.71  Aligned_cols=249  Identities=24%  Similarity=0.448  Sum_probs=203.9

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      ..|.+.|..+...--|+.||++++|++|+|+......                         .......+.||++||..+
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~-------------------------~s~ll~~L~Gh~GPVwqv   62 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG-------------------------QSKLLAELTGHSGPVWKV   62 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC-------------------------CceeeeEecCCCCCeeEE
Confidence            3456667777777779999999999999999987521                         235677899999999999


Q ss_pred             EEcc--CCCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEEECCCC---cee
Q 006220          428 SFSP--LGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRI---QPL  498 (656)
Q Consensus       428 ~~sp--d~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~---~~~  498 (656)
                      +|..  -|.+|++|+.||.|.||.-.+++  ....+..|...|++++|-|+  |-.|++++.||.|.+.+.+..   ...
T Consensus        63 ~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~  142 (299)
T KOG1332|consen   63 AWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS  142 (299)
T ss_pred             eecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch
Confidence            9976  78999999999999999987663  34556679999999999995  667999999999999998764   234


Q ss_pred             EEecCCCCCeeEEEEcCC---C-----------CEEEEEECCCcEEEEeCCCCe--eEEEEecCCCCeEEEEEcCCC---
Q 006220          499 RIMAGHLSDVDCVRWHIN---C-----------NYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDG---  559 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~---~-----------~~l~tgs~dg~V~iwd~~~~~--~~~~~~~h~~~i~~l~~sp~g---  559 (656)
                      ++...|.-.|++++|.|.   |           ..|++|+.|..|.||+..+++  .-+.+.+|...|..++|.|.-   
T Consensus       143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~  222 (299)
T KOG1332|consen  143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP  222 (299)
T ss_pred             hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence            556689999999999985   4           569999999999999998763  345688999999999999963   


Q ss_pred             -CEEEEEECCCcEEEEeCCCCe---eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          560 -RYMASGDEDGTIMMWDLASGR---CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       560 -~~L~s~~~dg~I~iwD~~~~~---~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                       .+||+++.||++.||-.+...   ....+......++.++||..|++|+.++.|+.|.+|.-...
T Consensus       223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence             589999999999999865221   11122335578999999999999999999999999986543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.2e-25  Score=236.73  Aligned_cols=210  Identities=26%  Similarity=0.448  Sum_probs=176.9

Q ss_pred             Eee-cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccC------------------------------------------
Q 006220          416 LYQ-GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL------------------------------------------  452 (656)
Q Consensus       416 ~l~-~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~------------------------------------------  452 (656)
                      .+. .|.+.|+++.||+||+|||+|+.||.|+||.+..                                          
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            344 8999999999999999999999999999998653                                          


Q ss_pred             ------------------CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEc
Q 006220          453 ------------------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH  514 (656)
Q Consensus       453 ------------------~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~  514 (656)
                                        .+++..+.||...|.++.||.+ ++|+++|.|.||++|++....++..|. |..-|+||+|+
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn  418 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN  418 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence                              0112336789999999999964 589999999999999999999999997 99999999999


Q ss_pred             C-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee--CC---
Q 006220          515 I-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM--GH---  588 (656)
Q Consensus       515 p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~--~h---  588 (656)
                      | |.+|+++|+-||.||||++...+.+.- ..-..-|++++|+|||++.+.|+.+|.+++|++...+....+.  .|   
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence            9 789999999999999999987776654 3444789999999999999999999999999998777665543  11   


Q ss_pred             ---CccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          589 ---TSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       589 ---~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                         ...|+++.|.|. ...+++.+.|..|||+|.+....+.+..
T Consensus       498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK  541 (712)
T KOG0283|consen  498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK  541 (712)
T ss_pred             cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence               237999999874 3457778899999999997766655543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=9.7e-24  Score=202.81  Aligned_cols=249  Identities=22%  Similarity=0.406  Sum_probs=199.4

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      .+|.+-|+|+.|.+.|+.+|+|+.|++|+|||...                        +.+..........|.+.|..+
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~------------------------~s~~W~~Ts~Wrah~~Si~rV   65 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTS------------------------DSGTWSCTSSWRAHDGSIWRV   65 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccC------------------------CCCceEEeeeEEecCCcEEEE
Confidence            45677799999999999999999999999999753                        223345667788999999999


Q ss_pred             EEcc--CCCEEEEEeCCCeEEEEecc---------CCceeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEEEEECCC
Q 006220          428 SFSP--LGDFILSSSADTTIRLWSTK---------LNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDR  494 (656)
Q Consensus       428 ~~sp--d~~~L~s~s~Dg~I~lwd~~---------~~~~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lwd~~~  494 (656)
                      .|.+  -|+.+++||.|+++.||.-.         .+....++......|++++|.|  -|-.+++++.||.+|||+.-.
T Consensus        66 ~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d  145 (361)
T KOG2445|consen   66 VWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD  145 (361)
T ss_pred             EecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence            9976  47899999999999999752         2233455666788999999999  577899999999999998654


Q ss_pred             Ccee------EEec-------CCCCCeeEEEEcCC---CCEEEEEECC-----CcEEEEeCCCC----eeEEEEecCCCC
Q 006220          495 IQPL------RIMA-------GHLSDVDCVRWHIN---CNYIATGSSD-----KTVRLWDVSSG----ECVRIFIGHRSM  549 (656)
Q Consensus       495 ~~~~------~~~~-------~~~~~V~~v~~~p~---~~~l~tgs~d-----g~V~iwd~~~~----~~~~~~~~h~~~  549 (656)
                      .-.+      ..+.       .+..+..|+.|+|.   ..+||+|+.+     +.+.||....+    ..+..+.+|..+
T Consensus       146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp  225 (361)
T KOG2445|consen  146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP  225 (361)
T ss_pred             ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence            3222      1121       35667889999973   4678888766     57888876543    345567799999


Q ss_pred             eEEEEEcCC----CCEEEEEECCCcEEEEeCCCC--------------------eeeEeeeCCCccEEEEEEcCCCCEEE
Q 006220          550 ILSLAMSPD----GRYMASGDEDGTIMMWDLASG--------------------RCVTPLMGHTSCVWTLAYSCEGSLLA  605 (656)
Q Consensus       550 i~~l~~sp~----g~~L~s~~~dg~I~iwD~~~~--------------------~~~~~~~~h~~~V~~l~~s~~~~~l~  605 (656)
                      |+.|+|.|+    ...||+++.|| |+||.+...                    +.+..+.+|.+.|+.+.|+-.|.+|+
T Consensus       226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs  304 (361)
T KOG2445|consen  226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS  304 (361)
T ss_pred             ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence            999999996    34799999999 999998631                    24455678999999999999999999


Q ss_pred             EEECCCcEEEEeCCCC
Q 006220          606 SGSADCTVKLWDVTTS  621 (656)
Q Consensus       606 sgs~Dg~I~iWd~~~~  621 (656)
                      +.|.||+||+|...-.
T Consensus       305 StGdDG~VRLWkany~  320 (361)
T KOG2445|consen  305 STGDDGCVRLWKANYN  320 (361)
T ss_pred             ecCCCceeeehhhhhh
Confidence            9999999999987543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.1e-23  Score=202.02  Aligned_cols=259  Identities=22%  Similarity=0.383  Sum_probs=216.0

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~--dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (656)
                      .+.++|++...+. +..+...++-++.+++|....+.+..++.  |.+||..++.+                        
T Consensus        35 dDsl~LYd~~~g~-~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d------------------------   89 (311)
T KOG1446|consen   35 DDSLRLYDSLSGK-QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD------------------------   89 (311)
T ss_pred             CCeEEEEEcCCCc-eeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec------------------------
Confidence            3456666654433 33355566678999999887777777766  88899999875                        


Q ss_pred             CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCc
Q 006220          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (656)
Q Consensus       407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~  486 (656)
                          .+.++.+.||...|.+++.+|-+..++|++.|++|++||++..++...+.....+|  ++|.|.|-+||++.....
T Consensus        90 ----NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~  163 (311)
T KOG1446|consen   90 ----NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSEL  163 (311)
T ss_pred             ----CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCe
Confidence                46788899999999999999999999999999999999999888888776555554  789999999999998889


Q ss_pred             EEEEECCCC--ceeEEec---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCe---EEEEEcCC
Q 006220          487 ARIWSMDRI--QPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI---LSLAMSPD  558 (656)
Q Consensus       487 i~lwd~~~~--~~~~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i---~~l~~sp~  558 (656)
                      |++||++..  .|..++.   +.....+.+.|+|+|++|+.++..+.+++.|.-+|.....+.++...-   ...+|+||
T Consensus       164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd  243 (311)
T KOG1446|consen  164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD  243 (311)
T ss_pred             EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence            999999864  3555554   335678999999999999999999999999999999999998876533   56789999


Q ss_pred             CCEEEEEECCCcEEEEeCCCCeeeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          559 GRYMASGDEDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       559 g~~L~s~~~dg~I~iwD~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      |+++++|+.||+|.+|++.+|..+..+.+ +.+++.++.|+|.-.++++++  ..+.+|=...
T Consensus       244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~  304 (311)
T KOG1446|consen  244 SKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE  304 (311)
T ss_pred             CcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence            99999999999999999999999999998 689999999999877777664  5788886543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=1.6e-24  Score=227.75  Aligned_cols=241  Identities=24%  Similarity=0.453  Sum_probs=209.7

Q ss_pred             EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      ..+.+|...|..+++.+. ..+++|+.||++++|+-...                          .......+.+|.+-|
T Consensus         8 ~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~--------------------------~~l~~~~~~~~~g~i   60 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGK--------------------------QYLETHAFEGPKGFI   60 (745)
T ss_pred             EEeccCccchheeEecCC-eEEeecCCCCceeeeeccCc--------------------------ccccceecccCccee
Confidence            357889999988887654 47888999999999996431                          122334566788887


Q ss_pred             EE-EEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220          425 YS-ASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       425 ~~-l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~  502 (656)
                      .+ +++.+ ++-.+++|+.|++|.+|......++..+++|...|++++...++. +++||.|.++++|-..  +....+.
T Consensus        61 ~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~  137 (745)
T KOG0301|consen   61 ANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQ  137 (745)
T ss_pred             eccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccC
Confidence            77 88876 334599999999999999999999999999999999999887777 9999999999999764  4566689


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      +|...|.+++.-|.+ .++|||.|++|++|.  .++++++|.+|...|..+++-+++ .+++++.||.|++|++ +|.++
T Consensus       138 gH~asVWAv~~l~e~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l  212 (745)
T KOG0301|consen  138 GHTASVWAVASLPEN-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVL  212 (745)
T ss_pred             CcchheeeeeecCCC-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCcee
Confidence            999999999999887 889999999999997  489999999999999999999875 5778899999999999 89999


Q ss_pred             EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       583 ~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      .++.+|+..|++++...++..++|+|.|++++||+...
T Consensus       213 ~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e  250 (745)
T KOG0301|consen  213 LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE  250 (745)
T ss_pred             eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence            99999999999999888889999999999999999873

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=3.1e-26  Score=241.27  Aligned_cols=208  Identities=28%  Similarity=0.591  Sum_probs=197.3

Q ss_pred             eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (656)
Q Consensus       417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~  496 (656)
                      ...|+..|.|+..-..++.+++|+.|..+.+|.+.....+..+.+|..+|-++.|++....+++|+.+|+|++||++..+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            34688889999887778999999999999999998888888899999999999999999999999999999999999999


Q ss_pred             eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      .++.+.+|...+..+.|||-+.|.+.|+.|+.+.+||++...|...+.+|...+.++.|+|+|+|+++|++|..++|||+
T Consensus       104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~  183 (825)
T KOG0267|consen  104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL  183 (825)
T ss_pred             hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       577 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      ..|+.+..|..|.+.|.++.|+|..-++++||.|++|++||+++-..+
T Consensus       184 ~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I  231 (825)
T KOG0267|consen  184 TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVI  231 (825)
T ss_pred             cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEe
Confidence            999999999999999999999999999999999999999999875544

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.6e-24  Score=218.27  Aligned_cols=239  Identities=24%  Similarity=0.428  Sum_probs=201.4

Q ss_pred             eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (656)
Q Consensus       349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  428 (656)
                      .|...+.|++.|+||+|||+|+.|..|.||+..+                            ......+.+|.+.|.+++
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t----------------------------~ehv~~~~ghr~~V~~L~  251 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT----------------------------LEHVKVFKGHRGAVSSLA  251 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcc----------------------------cchhhcccccccceeeee
Confidence            7788899999999999999999999999999886                            234455889999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCe
Q 006220          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV  508 (656)
Q Consensus       429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V  508 (656)
                      |-.....|++++.|++|++|+++....+.++-+|...|.+|.-..-++.+-+|+.|+++++|++.. ....++.+|.+.+
T Consensus       252 fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~si  330 (479)
T KOG0299|consen  252 FRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSI  330 (479)
T ss_pred             eecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCe
Confidence            998888999999999999999998888889999999999999888888888888999999999943 4455677899999


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-c-----------CCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-G-----------HRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~-----------h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      .|++|- |...+++|+.+|.|.+|++.+.+++.+.. .           +..+|++++..|...++++|+.+|.|++|-+
T Consensus       331 dcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i  409 (479)
T KOG0299|consen  331 DCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI  409 (479)
T ss_pred             eeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence            999996 55689999999999999999888876653 1           2238999999999999999999999999999


Q ss_pred             CCC----eeeEeeeCCCccEEEEEEcCCCCEEEEE-ECCCcEEEEeC
Q 006220          577 ASG----RCVTPLMGHTSCVWTLAYSCEGSLLASG-SADCTVKLWDV  618 (656)
Q Consensus       577 ~~~----~~~~~~~~h~~~V~~l~~s~~~~~l~sg-s~Dg~I~iWd~  618 (656)
                      ..+    .++..+. -.+.|++++|+++|..+++| +..-.+-=|-.
T Consensus       410 ~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  410 EDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             cCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence            887    3444443 56889999999999966555 44444444433

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.5e-24  Score=205.04  Aligned_cols=272  Identities=20%  Similarity=0.326  Sum_probs=200.0

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC------------------
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP------------------  407 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  407 (656)
                      ++.+|.+.|+|++||.||++||+++.|+.|+||++.......-...........+....+.+                  
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            46789999999999999999999999999999999753221110000000000000000000                  


Q ss_pred             ------CCCce-------eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC
Q 006220          408 ------NGRKR-------SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ  474 (656)
Q Consensus       408 ------~~~~~-------~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~  474 (656)
                            ++...       ......-|+-.|..+-....+.++++++.|..|.+|+++ |+.+..+......-+..+.||+
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~  239 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD  239 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence                  00000       111123456677777777788999999999999999999 8888888777777788999999


Q ss_pred             CCEEEEEECCCcEEEEECC--------CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-------Cee
Q 006220          475 GHYFASSSHDRTARIWSMD--------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GEC  539 (656)
Q Consensus       475 ~~~l~sgs~Dg~i~lwd~~--------~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-------~~~  539 (656)
                      |+++++++..--+++|.+-        .-..+..+.||.+.|..++|++++..++|.|.||++++||+.-       ...
T Consensus       240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~  319 (420)
T KOG2096|consen  240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKI  319 (420)
T ss_pred             CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchH
Confidence            9999999999999999852        2234556789999999999999999999999999999999852       122


Q ss_pred             EEEE----ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-CCCccEEEEEEcCCCCEEEEEECCCcEE
Q 006220          540 VRIF----IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVK  614 (656)
Q Consensus       540 ~~~~----~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~  614 (656)
                      ++.+    ..-.+.-..+.++|+|+.|+.+.. ..+.++..++|+....+. .|...|.+++|+++|++++++| |..++
T Consensus       320 Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vr  397 (420)
T KOG2096|consen  320 LKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVR  397 (420)
T ss_pred             hhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeee
Confidence            2222    112233347999999999988754 579999999988776665 6899999999999999999987 66788


Q ss_pred             EEeCCC
Q 006220          615 LWDVTT  620 (656)
Q Consensus       615 iWd~~~  620 (656)
                      +..-..
T Consensus       398 v~~ntp  403 (420)
T KOG2096|consen  398 VIRNTP  403 (420)
T ss_pred             eecCCC
Confidence            876433

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.7e-24  Score=214.91  Aligned_cols=228  Identities=23%  Similarity=0.412  Sum_probs=176.1

Q ss_pred             eeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce---eEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220          412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       412 ~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                      .....+..|+..|+-+.||++|++|||++.|.+..+|.+.....   ..++.+|..+|.-+.||||.+|+++|+.|..+.
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~  294 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS  294 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence            35567889999999999999999999999999999999876554   667789999999999999999999999999999


Q ss_pred             EEECCCCceeEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-CCeEEEEEcCCCCEEEEEE
Q 006220          489 IWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       489 lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g~~L~s~~  566 (656)
                      +||..++...+.+. ++...+.+++|.|+|..+++|+.|++|..||+. |+....+.+-. ..|.+++.++||+++++.+
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence            99999999888776 446789999999999999999999999999985 44444444433 4699999999999999988


Q ss_pred             CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCC---------------------------------------------
Q 006220          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG---------------------------------------------  601 (656)
Q Consensus       567 ~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~---------------------------------------------  601 (656)
                      .|..|++++..+......+. -..+|++++.|.++                                             
T Consensus       374 ~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~  452 (519)
T KOG0293|consen  374 VDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND  452 (519)
T ss_pred             cccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence            88877777664432222111 11234444444444                                             


Q ss_pred             CEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          602 SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       602 ~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      .++++|+.|+.|+||+..+++               ++..+++|+..|.+|+++|
T Consensus       453 ~fiaSGSED~kvyIWhr~sgk---------------ll~~LsGHs~~vNcVswNP  492 (519)
T KOG0293|consen  453 KFIASGSEDSKVYIWHRISGK---------------LLAVLSGHSKTVNCVSWNP  492 (519)
T ss_pred             ceEEecCCCceEEEEEccCCc---------------eeEeecCCcceeeEEecCC
Confidence            455666666666666655544               5666777777777777764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.2e-23  Score=197.99  Aligned_cols=233  Identities=22%  Similarity=0.358  Sum_probs=203.6

Q ss_pred             EeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          347 FINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      ..+|.+.|-.++|+|. ..++|+++.|..|++||....++.                            .... ..+.=.
T Consensus        60 ~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~----------------------------~~i~-~~~eni  110 (313)
T KOG1407|consen   60 YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT----------------------------ARIE-TKGENI  110 (313)
T ss_pred             ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE----------------------------EEee-ccCcce
Confidence            4577888999999874 778999999999999998753221                            1111 223334


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~  505 (656)
                      -+.|+|+|.+++.++.|..|...|.++.+.....+ ....+.-++|+-++++|+.....|+|.|.....-+++..+..|.
T Consensus       111 ~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~  189 (313)
T KOG1407|consen  111 NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP  189 (313)
T ss_pred             EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC
Confidence            57899999999999999999999999887766655 45567889999888888888888999999999999999999999


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      ....||.|+|+|+|+|+|+.|..+.+||+..--|++.+..+.-+|..+.||.+|++||+|++|..|-|=++.+|..+..+
T Consensus       190 snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI  269 (313)
T KOG1407|consen  190 SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI  269 (313)
T ss_pred             cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             eCCCccEEEEEEcCCCCEEEEEECC
Q 006220          586 MGHTSCVWTLAYSCEGSLLASGSAD  610 (656)
Q Consensus       586 ~~h~~~V~~l~~s~~~~~l~sgs~D  610 (656)
                      . +.++...++|+|...+||-++.|
T Consensus       270 ~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  270 P-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             e-ccCCceeEEecCCCceeeEEecC
Confidence            4 67888999999999999988865

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.6e-24  Score=206.88  Aligned_cols=288  Identities=21%  Similarity=0.321  Sum_probs=226.4

Q ss_pred             ceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc---cccCCCC---CCCCCCc--
Q 006220          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAV---SSGLQGE---NDTTPRE--  402 (656)
Q Consensus       331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~---~~~~~~~---~~~~~~~--  402 (656)
                      ...+|... ...|+.++.+|.+.|+|+.|++.+.++++++.|++-.||...-.-....   .....++   .......  
T Consensus       171 TA~iWs~E-sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d  249 (481)
T KOG0300|consen  171 TARIWSLE-SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRD  249 (481)
T ss_pred             ceeEEeec-cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccc
Confidence            44566543 3467788999999999999999999999999999999998431110000   0000000   0000000  


Q ss_pred             ---cccC-CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEE
Q 006220          403 ---DIIG-PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF  478 (656)
Q Consensus       403 ---~~~~-~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l  478 (656)
                         .... ...-......+.+|.+.|.+..|-..|+.+++++.|.+-.+||++++..+..+.||....+.++-+|..+++
T Consensus       250 ~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLV  329 (481)
T KOG0300|consen  250 TDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLV  329 (481)
T ss_pred             cccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEE
Confidence               0000 011234566789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCcEEEEECCC-CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCe-eEEEEecCCCCeEEEEEc
Q 006220          479 ASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMS  556 (656)
Q Consensus       479 ~sgs~Dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~-~~~~~~~h~~~i~~l~~s  556 (656)
                      ++.+.|.+.++||++. ...+..|.||...|+++.|..+. .+++|+.|.+|++||+++.. ++.++. ..++++.++.+
T Consensus       330 vTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs  407 (481)
T KOG0300|consen  330 VTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVS  407 (481)
T ss_pred             EEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEee
Confidence            9999999999999974 45678899999999999998654 68899999999999999764 455554 56789999999


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCeeeEee-----eCCCccEEEEEEcCCC--CEEEEEECCCcEEEEeCCCCC
Q 006220          557 PDGRYMASGDEDGTIMMWDLASGRCVTPL-----MGHTSCVWTLAYSCEG--SLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       557 p~g~~L~s~~~dg~I~iwD~~~~~~~~~~-----~~h~~~V~~l~~s~~~--~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ..+..|+.-..+..|++||++ |..+..+     .+|...|.|++|..+.  .-|+++|.|..+.=|.+....
T Consensus       408 ~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  408 KGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             cCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence            988899999999999999985 5555444     4788999999997653  358899999999999987643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3e-24  Score=216.79  Aligned_cols=208  Identities=26%  Similarity=0.438  Sum_probs=185.8

Q ss_pred             CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC------
Q 006220          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD------  493 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~------  493 (656)
                      -.++|.|+.-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-.+|+|+.|+-||.+|+|||.||.|.+|.+-      
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~  159 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD  159 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999762      


Q ss_pred             ---CCceeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220          494 ---RIQPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       494 ---~~~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                         +.++.+.+..|.-+|+.+...+.  ..+++|+|.|.++++||+..|..+..+. ....+.+++.+|-++.+++|+.+
T Consensus       160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~  238 (476)
T KOG0646|consen  160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEE  238 (476)
T ss_pred             cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCc
Confidence               46789999999999999988754  4689999999999999999999888776 45789999999999999999999


Q ss_pred             CcEEEEeCCCC----------------eeeEeeeCCCc--cEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          569 GTIMMWDLASG----------------RCVTPLMGHTS--CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       569 g~I~iwD~~~~----------------~~~~~~~~h~~--~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      |.|.+.++...                ..+..+.+|.+  .|+|++.+-||++|++|+.||.|+|||+.+.+.+....
T Consensus       239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            99999887432                34455678887  99999999999999999999999999998877655444

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=8.6e-24  Score=222.73  Aligned_cols=238  Identities=24%  Similarity=0.357  Sum_probs=202.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      .+-++|+ ..+.||+| ....|.+|+-....                            .......+...|+++.|+++|
T Consensus       180 ~nlldWs-s~n~laVa-lg~~vylW~~~s~~----------------------------v~~l~~~~~~~vtSv~ws~~G  229 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVA-LGQSVYLWSASSGS----------------------------VTELCSFGEELVTSVKWSPDG  229 (484)
T ss_pred             hhHhhcc-cCCeEEEE-ecceEEEEecCCCc----------------------------eEEeEecCCCceEEEEECCCC
Confidence            4556788 56678887 55689999976421                            122222237899999999999


Q ss_pred             CEEEEEeCCCeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ecCCCCCeeEE
Q 006220          434 DFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLSDVDCV  511 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~-~~~~~~~V~~v  511 (656)
                      .+|++|..+|.|.|||..+...+..+.+ |...|-+++|+  +..+.+|+.|+.|..+|++..+.... +.+|...|..+
T Consensus       230 ~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgL  307 (484)
T KOG0305|consen  230 SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGL  307 (484)
T ss_pred             CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeee
Confidence            9999999999999999999999999998 99999999998  77899999999999999998776555 88999999999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEE--ECCCcEEEEeCCCCeeeEeeeCC
Q 006220          512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASG--DEDGTIMMWDLASGRCVTPLMGH  588 (656)
Q Consensus       512 ~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~L~s~--~~dg~I~iwD~~~~~~~~~~~~h  588 (656)
                      +|+++++++|+|+.|+.+.|||.....+...+..|.+.|.+++|+| ....||+|  +.|++|++||..+|..+..+. -
T Consensus       308 kws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-t  386 (484)
T KOG0305|consen  308 KWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-T  386 (484)
T ss_pred             EECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-c
Confidence            9999999999999999999999988899999999999999999999 45688886  479999999999999887764 3


Q ss_pred             CccEEEEEEcCCCCEEEEE--ECCCcEEEEeCCCCCce
Q 006220          589 TSCVWTLAYSCEGSLLASG--SADCTVKLWDVTTSTKV  624 (656)
Q Consensus       589 ~~~V~~l~~s~~~~~l~sg--s~Dg~I~iWd~~~~~~~  624 (656)
                      .+.|.+|.|++..+-|+++  -.++.|.||++.+.+.+
T Consensus       387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~  424 (484)
T KOG0305|consen  387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV  424 (484)
T ss_pred             CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee
Confidence            4679999999988766664  36778999999884433

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=7e-26  Score=238.60  Aligned_cols=238  Identities=26%  Similarity=0.499  Sum_probs=218.8

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+..|...|.|+..-..++.+++|+.|-.+-+|.+...                            .....+.+|.++|-
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp----------------------------~~i~S~~~hespIe   74 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP----------------------------NAITSLTGHESPIE   74 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCC----------------------------chhheeeccCCcce
Confidence            34566777888888777899999999999999987641                            12234889999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~  505 (656)
                      |+.|+++..+|++|+.+|+|++||+.....++++.+|...+.++.|+|.+.++++|+.|+.+.+||++...+...+.+|.
T Consensus        75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~  154 (825)
T KOG0267|consen   75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT  154 (825)
T ss_pred             eeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      ..|.++.|+|+|++++.|+.|.+++|||...|+....|.+|.+.+..+.|+|..-++++|+.|++|++||+.+-..+...
T Consensus       155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~  234 (825)
T KOG0267|consen  155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG  234 (825)
T ss_pred             ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eCCCccEEEEEEcCCCCEEEEEECCC
Q 006220          586 MGHTSCVWTLAYSCEGSLLASGSADC  611 (656)
Q Consensus       586 ~~h~~~V~~l~~s~~~~~l~sgs~Dg  611 (656)
                      ......|.++.|+|++..+.+|....
T Consensus       235 ~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  235 KPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CCccCCceeeeecCCceeeecCchhh
Confidence            77788999999999999998887653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=4.1e-25  Score=212.76  Aligned_cols=203  Identities=24%  Similarity=0.405  Sum_probs=184.0

Q ss_pred             ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEE--------eeCCCccEEEEEEecCCCEEEEEECCCcEEE
Q 006220          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--------YKGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (656)
Q Consensus       418 ~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~--------~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~l  489 (656)
                      .+..+.+-|..|||||++|++||.||-|.+|+..+|+....        +.-+..+|.|++|+.|...+++|+.||.|++
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            35567788999999999999999999999999988865432        3347889999999999999999999999999


Q ss_pred             EECCCCceeEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220          490 WSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       490 wd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      |.++++.+++.|. .|...|+|+.|+.++..+++++.|.++|+.-+++|+++..|.||.+.|+...|+++|.++++++.|
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence            9999999999988 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEeeeC--CCccEEEEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 006220          569 GTIMMWDLASGRCVTPLMG--HTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~~--h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      |+|++|+..++.|+.+++.  ...+|.++..-| +...++.+...++|.|-++..
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG  424 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG  424 (508)
T ss_pred             ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence            9999999999999999874  346788888766 456788888899999988754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=3.4e-23  Score=199.55  Aligned_cols=241  Identities=17%  Similarity=0.254  Sum_probs=196.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ...|+++.|+|.++.|++++.||++++|+....                             .......|..++.+++|.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-----------------------------~l~~~~~~~~plL~c~F~   63 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-----------------------------SLKLKFKHGAPLLDCAFA   63 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccch-----------------------------hhhhheecCCceeeeecc
Confidence            567999999999999999999999999998742                             223344589999999998


Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeE
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC  510 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~  510 (656)
                      + ...+++|+-||.|+.+|+.++.... +..|..+|.||.+++....+++||+|++|++||.+.......+.. ...|.|
T Consensus        64 d-~~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~  140 (323)
T KOG1036|consen   64 D-ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYC  140 (323)
T ss_pred             C-CceEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEE
Confidence            6 5678999999999999999876554 456999999999999889999999999999999998666655543 347777


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE--ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----eeeEe
Q 006220          511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG----RCVTP  584 (656)
Q Consensus       511 v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~--~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~----~~~~~  584 (656)
                      +..  .++.|++|+.|..|.+||+++.......  ..-.-.+.|+++-|++.-.++++-||.|.+=.+...    ..-..
T Consensus       141 ~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya  218 (323)
T KOG1036|consen  141 MDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA  218 (323)
T ss_pred             Eec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence            765  6789999999999999999986544321  223457899999999888999999999988776655    23334


Q ss_pred             eeCCC---------ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          585 LMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       585 ~~~h~---------~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      ++.|.         -+|++++|+|-...|+|||.||.|.+||+.+.+++.
T Consensus       219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~  268 (323)
T KOG1036|consen  219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK  268 (323)
T ss_pred             EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhh
Confidence            45553         379999999999999999999999999998876543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.3e-23  Score=225.36  Aligned_cols=244  Identities=20%  Similarity=0.309  Sum_probs=210.5

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      ..|..+.+.++|.|+|.+|.+++.||.|++|+......                           .-..+..+...|+++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e---------------------------~P~ti~~~g~~v~~i   62 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE---------------------------EPETIDISGELVSSI   62 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc---------------------------CCchhhccCceeEEE
Confidence            35778899999999999999999999999999764100                           000111166778887


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCC
Q 006220          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (656)
Q Consensus       428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~  507 (656)
                      +-.  +.+|++|+.+++|.+|....++.-..+...+-|+.+++|+-+|.+++.||.|-.|++.++.+......+.+|..+
T Consensus        63 a~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap  140 (933)
T KOG1274|consen   63 ACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP  140 (933)
T ss_pred             eec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence            765  559999999999999999988776666667789999999999999999999999999999999999999999999


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC--------CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h--------~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                      |.++.|+|++++||+.+.||.|++||+.++.+..++.+-        ...+..++|+|+|..++..+.|+.|.+|+...+
T Consensus       141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w  220 (933)
T KOG1274|consen  141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW  220 (933)
T ss_pred             eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence            999999999999999999999999999998877665431        346778999999888888889999999999999


Q ss_pred             eeeEeeeC--CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          580 RCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       580 ~~~~~~~~--h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      .....+..  +...+..++|+|+|+|||+++.||.|.|||+.+
T Consensus       221 e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  221 ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            98888764  445599999999999999999999999999996

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=4.3e-24  Score=223.99  Aligned_cols=245  Identities=23%  Similarity=0.417  Sum_probs=212.0

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      .+...++.|++.||+|++||+|..-|.++||++...                            ........|...|.|+
T Consensus       456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l----------------------------~~~~~~eAHesEilcL  507 (1080)
T KOG1408|consen  456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL----------------------------EYTCFMEAHESEILCL  507 (1080)
T ss_pred             cCcccceEEEEECCCcceecccCccCceEEEEehhh----------------------------hhhhheecccceeEEE
Confidence            345667999999999999999999999999999852                            2344566899999999


Q ss_pred             EEccC---CCEEEEEeCCCeEEEEeccCC-ceeEEeeCCCccEEEEEEecCC--CEEEEEECCCcEEEEECCCCceeEEe
Q 006220          428 SFSPL---GDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQG--HYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       428 ~~spd---~~~L~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp~~--~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      .||..   .++|++++.|.-|.++|+... ..+.++.+|...|+++.|-..|  ..+++++.|+.|.+-..+.....+.+
T Consensus       508 eyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f  587 (1080)
T KOG1408|consen  508 EYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF  587 (1080)
T ss_pred             eecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec
Confidence            99863   468999999999999998744 4567888999999999999877  67899999998876554433333444


Q ss_pred             cCC-----CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec---CCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 006220          502 AGH-----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASGDEDGTIMM  573 (656)
Q Consensus       502 ~~~-----~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~---h~~~i~~l~~sp~g~~L~s~~~dg~I~i  573 (656)
                      ..|     ...+..++..|+..++++++.|+.|+|||+.+|+.++.|++   |.+....+...|.|.||++...|.++.+
T Consensus       588 ~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~  667 (1080)
T KOG1408|consen  588 PRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF  667 (1080)
T ss_pred             cccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEE
Confidence            333     24578899999999999999999999999999999999975   5677888999999999999999999999


Q ss_pred             EeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       574 wD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      +|+-+|+++.++.||...|+.+.|.+|-+.|++.+.||+|.||.+..
T Consensus       668 ~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  668 VDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            99999999999999999999999999999999999999999999865

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4.8e-24  Score=215.38  Aligned_cols=242  Identities=19%  Similarity=0.314  Sum_probs=204.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      -.+.|.|++-+|+|.+|+.|+..|.|++|.+.+                            +.....+.+|-.+|+|+.|
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss----------------------------G~LL~v~~aHYQ~ITcL~f  131 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSS----------------------------GILLNVLSAHYQSITCLKF  131 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEecc----------------------------ccHHHHHHhhccceeEEEE
Confidence            357899999999999999999999999999986                            3344556789999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEecc---------CCceeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEEECCCCcee
Q 006220          430 SPLGDFILSSSADTTIRLWSTK---------LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~---------~~~~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                      +.||.+|+|||.||.|.+|++.         +-..+..+..|+-+|+++...+.  ..+++|+|.|.++++||+..+..+
T Consensus       132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL  211 (476)
T KOG0646|consen  132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL  211 (476)
T ss_pred             eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence            9999999999999999999864         23457788899999999988764  468999999999999999999888


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC----------------CeeEEEEecCCC--CeEEEEEcCCCC
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS----------------GECVRIFIGHRS--MILSLAMSPDGR  560 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~----------------~~~~~~~~~h~~--~i~~l~~sp~g~  560 (656)
                      ..+. ....+.+++.+|-+..+++|+.+|.|.+.++.+                +..++.+.||.+  +|+|++++-||.
T Consensus       212 lti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt  290 (476)
T KOG0646|consen  212 LTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT  290 (476)
T ss_pred             EEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence            7776 457899999999999999999999999987743                234567889988  999999999999


Q ss_pred             EEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEE-EECCCcEEEEeCCC
Q 006220          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS-GSADCTVKLWDVTT  620 (656)
Q Consensus       561 ~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-gs~Dg~I~iWd~~~  620 (656)
                      .|++|+.||.|+|||+.+.++++++..-.++|+.+.+.|-..-.+. -+..-.+-.|++..
T Consensus       291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr  351 (476)
T KOG0646|consen  291 LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKR  351 (476)
T ss_pred             EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhhc
Confidence            9999999999999999999999988767789999999774333332 33344566666654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=4.4e-24  Score=216.24  Aligned_cols=259  Identities=20%  Similarity=0.368  Sum_probs=214.7

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      ..++|..-|.++.+|...+++.+| ..|.|+|||+...........                       ........-|.
T Consensus       414 ~tL~HGEvVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k~Pvsq-----------------------Ldcl~rdnyiR  469 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNKSPVSQ-----------------------LDCLNRDNYIR  469 (705)
T ss_pred             hhhccCcEEEEEEecCCcceeEec-CCCeEEEeeccCCCCCCcccc-----------------------ccccCccccee
Confidence            345677778889999999999999 678999999985321111000                       00112346688


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~  503 (656)
                      ++..+|||+.|++|+.-.++.|||+...+....  +......+..++.+||.+..++|..||.|.|||+.+...++.|.|
T Consensus       470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG  549 (705)
T KOG0639|consen  470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG  549 (705)
T ss_pred             eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC
Confidence            999999999999999999999999986655332  333345677899999999999999999999999999999999999


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~  583 (656)
                      |...+.||..+++|..|.||+-|.+||.||++++..+.... ..+.|.++..+|++.||+.|-..+.+.|... ++..-.
T Consensus       550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~-skp~ky  627 (705)
T KOG0639|consen  550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKY  627 (705)
T ss_pred             CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEec-CCccce
Confidence            99999999999999999999999999999999987765432 4578999999999999999999999998876 444555


Q ss_pred             eeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccc
Q 006220          584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK  630 (656)
Q Consensus       584 ~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~  630 (656)
                      .+.-|.+.|.++.|.+.|+++++.|.|+.+..|...-+..+....+.
T Consensus       628 qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~  674 (705)
T KOG0639|consen  628 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES  674 (705)
T ss_pred             eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc
Confidence            66789999999999999999999999999999999998887766553

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=2.2e-24  Score=201.41  Aligned_cols=205  Identities=24%  Similarity=0.445  Sum_probs=181.7

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      +.|..-|.+++|+.|.++|++|+.+..+||||++...                           .....+.+|++.|..+
T Consensus        97 f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~---------------------------App~E~~ghtg~Ir~v  149 (334)
T KOG0278|consen   97 FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK---------------------------APPKEISGHTGGIRTV  149 (334)
T ss_pred             hhhhheeeeEEecccchhhhccchHHHhhhhhccCCC---------------------------CCchhhcCCCCcceeE
Confidence            5677789999999999999999999999999998521                           1233467899999999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCC
Q 006220          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (656)
Q Consensus       428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~  507 (656)
                      .|....+.++|++.|++||+||.+++..+..+. ...+|.++.++++|+++.++ ..+.|.+||..+...+..+.. ...
T Consensus       150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~n  226 (334)
T KOG0278|consen  150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCN  226 (334)
T ss_pred             EEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-ccc
Confidence            999989999999999999999999999998887 56789999999999877665 558899999999988888764 366


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      |.+...+|+...+++|+.|..++.||..+|..+..+ .+|.++|.|+.|+|+|...++|+.||+|+||.+..++..
T Consensus       227 V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  227 VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             cccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            899999999999999999999999999999999886 899999999999999999999999999999998766543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.8e-24  Score=229.78  Aligned_cols=244  Identities=23%  Similarity=0.390  Sum_probs=202.5

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220          354 LNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (656)
Q Consensus       354 V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  432 (656)
                      +..+.|+. +.++||+++..|.|.+||+....                         .......+..|...|.++.|++.
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-------------------------rnk~l~~f~EH~Rs~~~ldfh~t  144 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI-------------------------RNKLLTVFNEHERSANKLDFHST  144 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccc-------------------------cchhhhHhhhhccceeeeeeccC
Confidence            55566764 58899999999999999998521                         12345567889999999999986


Q ss_pred             C-CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCC-ceeEEecCCCCCee
Q 006220          433 G-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVD  509 (656)
Q Consensus       433 ~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~~~~~V~  509 (656)
                      . .+|++||.||+|++||++.......+.+....|.+|.|+| .+.+|+++...|.+++||++.. ++...+..|.++|.
T Consensus       145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~  224 (839)
T KOG0269|consen  145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL  224 (839)
T ss_pred             CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE
Confidence            5 4789999999999999999999999999889999999999 6788999999999999999875 46677889999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec-CCCCeEEEEEcCCCC-EEEEEE--CCCcEEEEeCCCC-eeeEe
Q 006220          510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGR-YMASGD--EDGTIMMWDLASG-RCVTP  584 (656)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~-h~~~i~~l~~sp~g~-~L~s~~--~dg~I~iwD~~~~-~~~~~  584 (656)
                      |+.|||++.+||||+.|+.|+|||..+++.-....- ...++.++.|-|... .|++++  .|-.|+|||++.. -+...
T Consensus       225 c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t  304 (839)
T KOG0269|consen  225 CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT  304 (839)
T ss_pred             EEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccccee
Confidence            999999999999999999999999987654433332 346899999999765 566654  6789999999754 45567


Q ss_pred             eeCCCccEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCC
Q 006220          585 LMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       585 ~~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      +..|...++.++|.. |...+.+++.||+|..-.+++..
T Consensus       305 ~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  305 FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             eeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            788999999999965 56688999999998776665543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=5.6e-23  Score=207.48  Aligned_cols=242  Identities=20%  Similarity=0.350  Sum_probs=192.7

Q ss_pred             eeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCce----------eEEeeCCCccEEEEEEecC-CCEEEE
Q 006220          413 SYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN----------LVCYKGHNYPVWDVQFNPQ-GHYFAS  480 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~----------~~~~~~h~~~V~~l~~sp~-~~~l~s  480 (656)
                      .......|.+.|+.+.+-|... .+++++..+.|.|||......          -..+.+|...-.+++|++. ..++++
T Consensus       116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls  195 (422)
T KOG0264|consen  116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS  195 (422)
T ss_pred             EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence            4455667999999999999876 556778889999999764322          2367889887889999994 457999


Q ss_pred             EECCCcEEEEECCCC-------ceeEEecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCC--CCeeEEEEecCCCCe
Q 006220          481 SSHDRTARIWSMDRI-------QPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVS--SGECVRIFIGHRSMI  550 (656)
Q Consensus       481 gs~Dg~i~lwd~~~~-------~~~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~--~~~~~~~~~~h~~~i  550 (656)
                      |+.|++|.+||+...       .+...+.+|...|..++||+- ...+++++.|+.+.|||+|  +.++.....+|.+.|
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v  275 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV  275 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence            999999999998643       345778899999999999984 5677889999999999999  566777888999999


Q ss_pred             EEEEEcCC-CCEEEEEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          551 LSLAMSPD-GRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       551 ~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      .|++|+|- +..||+|+.|++|.+||+++. +++..+.+|...|..+.|||+ ..+||+++.|+.+.|||+..-...+. 
T Consensus       276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~-  354 (422)
T KOG0264|consen  276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS-  354 (422)
T ss_pred             eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC-
Confidence            99999994 567889999999999999874 578899999999999999995 67899999999999999987655443 


Q ss_pred             ccccCCccccccccccCCCCCeEEEEEc
Q 006220          628 EEKSGTNRLRSLKTLPTKSTPVYSLQVL  655 (656)
Q Consensus       628 ~~~~~~~~~~~l~~~p~~~~pv~sv~Ft  655 (656)
                      .+.....+++++..-.+|+.-|..++|.
T Consensus       355 ~eda~dgppEllF~HgGH~~kV~DfsWn  382 (422)
T KOG0264|consen  355 PEDAEDGPPELLFIHGGHTAKVSDFSWN  382 (422)
T ss_pred             hhhhccCCcceeEEecCcccccccccCC
Confidence            1222233444555555555555555443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=3.3e-24  Score=217.20  Aligned_cols=260  Identities=20%  Similarity=0.311  Sum_probs=215.9

Q ss_pred             cceecCCCCCC----ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220          330 NRVHLSSAALP----SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (656)
Q Consensus       330 ~~v~l~~~~~p----s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (656)
                      ..|++|+...|    .+..+-..+..+-|.++...|||+.|++|+.-.++.|||+......                   
T Consensus       440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr-------------------  500 (705)
T KOG0639|consen  440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR-------------------  500 (705)
T ss_pred             CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc-------------------
Confidence            35566765433    1222233455667999999999999999999999999999752111                   


Q ss_pred             CCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC
Q 006220          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (656)
Q Consensus       406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg  485 (656)
                             .-..+....-.+++++.+||.+..++|..||.|.|||+.+...+..+++|...+.||.++++|..|.||+-|.
T Consensus       501 -------ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  501 -------IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             -------hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence                   1111222334678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~  565 (656)
                      +++.||++.+..+.... ..+.|.++.++|++.++++|-.++.|.+.... +.....+..|.+.|.++.|++.|+|+++.
T Consensus       574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvSt  651 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVST  651 (705)
T ss_pred             ceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeec
Confidence            99999999887665443 45789999999999999999999999998764 34444566799999999999999999999


Q ss_pred             ECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       566 ~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      +.|+.+..|...-|..+...+ ..++|.++.+|.|.++++||+.|..-.||.+
T Consensus       652 GkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  652 GKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             CchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            999999999999998887764 3468999999999999999999998888875

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=3.5e-23  Score=197.58  Aligned_cols=219  Identities=27%  Similarity=0.450  Sum_probs=173.6

Q ss_pred             eeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          348 INTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       348 ~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      -.|.++|+++.+.+ .|+|+++|+.||.|.|||++.........             .+..........-..+|.-.|.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~-------------li~k~~c~v~~~h~~~Hky~iss  106 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG-------------LIAKHKCIVAKQHENGHKYAISS  106 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc-------------ceeheeeeccccCCccceeeeee
Confidence            34668899999987 49999999999999999998632111000             00000000011123468889999


Q ss_pred             EEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC---CCEEEEEECCCcEEEEECCCCceeEEec
Q 006220          427 ASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       427 l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~---~~~l~sgs~Dg~i~lwd~~~~~~~~~~~  502 (656)
                      +.|-| |...+.++|.|.++++||..+-+....++ ..+.|.+-+|||-   ..++|+|..|-.|++.|+.++...+++.
T Consensus       107 ~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls  185 (397)
T KOG4283|consen  107 AIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS  185 (397)
T ss_pred             eEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence            99999 44588899999999999999988888776 4567888889883   3467888899999999999999999999


Q ss_pred             CCCCCeeEEEEcCCCCE-EEEEECCCcEEEEeCCCC-eeEEEEe--------------cCCCCeEEEEEcCCCCEEEEEE
Q 006220          503 GHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSG-ECVRIFI--------------GHRSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~-l~tgs~dg~V~iwd~~~~-~~~~~~~--------------~h~~~i~~l~~sp~g~~L~s~~  566 (656)
                      ||...|.+|.|+|...+ |++|+.||.|++||++.. .|.+++.              .|.+.+..++|+.+|.++++++
T Consensus       186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g  265 (397)
T KOG4283|consen  186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG  265 (397)
T ss_pred             cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence            99999999999998776 578999999999999865 4544443              5677899999999999999999


Q ss_pred             CCCcEEEEeCCCCe
Q 006220          567 EDGTIMMWDLASGR  580 (656)
Q Consensus       567 ~dg~I~iwD~~~~~  580 (656)
                      .|..+++|+..+|+
T Consensus       266 td~r~r~wn~~~G~  279 (397)
T KOG4283|consen  266 TDDRIRVWNMESGR  279 (397)
T ss_pred             CccceEEeecccCc
Confidence            99999999987764

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.6e-23  Score=199.30  Aligned_cols=239  Identities=20%  Similarity=0.381  Sum_probs=195.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      ..|+.||+.|.+||+|+.||.|.|||+.+.                            ...+.+.+|..+|++++||++|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~----------------------------~iar~lsaH~~pi~sl~WS~dg   77 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF----------------------------RIARMLSAHVRPITSLCWSRDG   77 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc----------------------------chhhhhhccccceeEEEecCCC
Confidence            889999999999999999999999999862                            2345678899999999999999


Q ss_pred             CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEE-------------------------------------------
Q 006220          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ-------------------------------------------  470 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~-------------------------------------------  470 (656)
                      +.|+++|.|..|.+||+..+.++..++ ..+|||...                                           
T Consensus        78 r~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa  156 (405)
T KOG1273|consen   78 RKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA  156 (405)
T ss_pred             CEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence            999999999999999999888766554 233333322                                           


Q ss_pred             ----EecCCCEEEEEECCCcEEEEECCCCceeEEecCCC-CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-------e
Q 006220          471 ----FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-------E  538 (656)
Q Consensus       471 ----~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~-~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-------~  538 (656)
                          |.+.|.|+++|...|.+.+++..+.+++..++-.. ..|..+.++..|+.|++-+.|+.||.|+++.-       +
T Consensus       157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e  236 (405)
T KOG1273|consen  157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE  236 (405)
T ss_pred             ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence                45567899999999999999999999988887655 78999999999999999999999999998621       1


Q ss_pred             eE--EEEe--cCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeeEeeeCCC-ccEEEEEEcCCCCEEEEEECCCc
Q 006220          539 CV--RIFI--GHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCT  612 (656)
Q Consensus       539 ~~--~~~~--~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~sgs~Dg~  612 (656)
                      +.  ..+.  -....-.+++||.+|.|+++|+ ....++||.-..|.+++.+.|.. .....+.|+|-...+++. ..|.
T Consensus       237 ~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~  315 (405)
T KOG1273|consen  237 VEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGV  315 (405)
T ss_pred             cChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCc
Confidence            11  1111  1123446789999999998876 44679999999999999999877 577889999998888887 7899


Q ss_pred             EEEEeCCCCC
Q 006220          613 VKLWDVTTST  622 (656)
Q Consensus       613 I~iWd~~~~~  622 (656)
                      |+||......
T Consensus       316 v~iw~~~~~e  325 (405)
T KOG1273|consen  316 VYIWAVVQVE  325 (405)
T ss_pred             eEEEEeeccc
Confidence            9999986543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.9e-23  Score=208.50  Aligned_cols=263  Identities=19%  Similarity=0.295  Sum_probs=195.2

Q ss_pred             EEEEEcC-------CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          355 NCASISQ-------DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       355 ~~l~fs~-------dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      .|++|-.       -|+|+|.|+.|..|.|||+.-.......-.+ +...    ...  ..........-.+|+..|.++
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~L-Gs~~----sk~--~~k~~k~~~~~~gHTdavl~L  249 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTL-GSKA----SKK--KKKKGKRSNSASGHTDAVLAL  249 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceee-chhh----hhh--hhhhcccccccccchHHHHHH
Confidence            5677643       3789999999999999998742211000000 0000    000  000111222345799999999


Q ss_pred             EEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220          428 SFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (656)
Q Consensus       428 ~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~  505 (656)
                      +|+..-+ .|+|||.|.+|++||+.++++..++..|...|.++.|+| ...++++|+.|+++.+.|.+........-...
T Consensus       250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~  329 (463)
T KOG0270|consen  250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD  329 (463)
T ss_pred             HhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec
Confidence            9987654 688999999999999999999999999999999999999 46789999999999999998543332222345


Q ss_pred             CCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCeee
Q 006220          506 SDVDCVRWHINC-NYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       506 ~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      +.|..++|+|.. ..+++++.||+|+-+|+|+. +++.++..|.++|++|++++. -.++++++.|+.|++|++.....-
T Consensus       330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~  409 (463)
T KOG0270|consen  330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK  409 (463)
T ss_pred             cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence            789999999854 56788889999999999975 999999999999999999985 457889999999999998643321


Q ss_pred             EeeeCCC---ccEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCCcee
Q 006220          583 TPLMGHT---SCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       583 ~~~~~h~---~~V~~l~~s~~~-~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                       ....|.   +...|+++.|+- -.++.||..+.++|||+.+...+.
T Consensus       410 -~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  410 -SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             -ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence             111222   446677777764 467778888889999998876543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=2.1e-21  Score=200.63  Aligned_cols=262  Identities=14%  Similarity=0.147  Sum_probs=192.0

Q ss_pred             cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       330 ~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ..+++|+..... +..++ .....+.+++|+|+++.+ ++++.++.|++||.....                        
T Consensus        11 ~~v~~~d~~t~~-~~~~~-~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~------------------------   64 (300)
T TIGR03866        11 NTISVIDTATLE-VTRTF-PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE------------------------   64 (300)
T ss_pred             CEEEEEECCCCc-eEEEE-ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc------------------------
Confidence            356666654332 22233 344557889999999976 567788999999986421                        


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEE-EeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC-c
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILS-SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-T  486 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s-~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg-~  486 (656)
                          ....+..+.. +..++|+|+++.+++ ++.++.|++||+.+...+..+.. ...+.+++|+|+|.++++++.++ .
T Consensus        65 ----~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~  138 (300)
T TIGR03866        65 ----VIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNM  138 (300)
T ss_pred             ----EEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCe
Confidence                1122222322 467899999997755 45689999999998877766653 33468899999999999998775 4


Q ss_pred             EEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEecCCC-------CeEEEEEcCC
Q 006220          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRS-------MILSLAMSPD  558 (656)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h~~-------~i~~l~~sp~  558 (656)
                      +..||..+.+....... ...+.+++|+|++.++++++ .++.|++||+.+++.+..+..+..       ....++|+|+
T Consensus       139 ~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d  217 (300)
T TIGR03866       139 AHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD  217 (300)
T ss_pred             EEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence            67789988776655432 23567899999999886554 689999999999988776653211       2346889999


Q ss_pred             CCEEEE-EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCCcee
Q 006220          559 GRYMAS-GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       559 g~~L~s-~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sg-s~Dg~I~iWd~~~~~~~~  625 (656)
                      |+++++ .+.++.|.+||+.+++.+..+. +...+.+++|+|+|++|+++ +.+|.|++||+.+++...
T Consensus       218 g~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~  285 (300)
T TIGR03866       218 GKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK  285 (300)
T ss_pred             CCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence            998655 4556789999999888776553 44578999999999999886 468999999999877554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=4.4e-23  Score=203.08  Aligned_cols=208  Identities=23%  Similarity=0.422  Sum_probs=173.3

Q ss_pred             EEeecCccCEEEEEEccCC--CEEEEEeCCCeEEEEecc----------------CCceeEEeeCCCccEEEEEEecC-C
Q 006220          415 TLYQGHSGPVYSASFSPLG--DFILSSSADTTIRLWSTK----------------LNANLVCYKGHNYPVWDVQFNPQ-G  475 (656)
Q Consensus       415 ~~l~~h~~~V~~l~~spd~--~~L~s~s~Dg~I~lwd~~----------------~~~~~~~~~~h~~~V~~l~~sp~-~  475 (656)
                      ....+|.+.|..+.-++-+  .+.++-+..|.|.||++.                ....+.++.+|...-..++|||- .
T Consensus       145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~  224 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT  224 (440)
T ss_pred             ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence            4456788888888877755  466777889999999975                23457788899999999999993 3


Q ss_pred             CEEEEEECCCcEEEEECCCCcee---EEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCC---eeEEEEecCCC
Q 006220          476 HYFASSSHDRTARIWSMDRIQPL---RIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSG---ECVRIFIGHRS  548 (656)
Q Consensus       476 ~~l~sgs~Dg~i~lwd~~~~~~~---~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~---~~~~~~~~h~~  548 (656)
                      ..+++|..-+.|++|...++.-.   +.+.+|...|..++|+|.. ..|++||.||+|+|||+|.+   .++.+ +.|.+
T Consensus       225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~s  303 (440)
T KOG0302|consen  225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNS  303 (440)
T ss_pred             cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCC
Confidence            34888888889999998775432   4566899999999999954 67899999999999999988   44444 78999


Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEeCCC---CeeeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCc
Q 006220          549 MILSLAMSPDGRYMASGDEDGTIMMWDLAS---GRCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~---~~~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      .|+.|.|+..-.+||+|+.||+++|||++.   ++++..++.|..+|+++.|+|. ...|+++|.|..|.|||+.....
T Consensus       304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            999999999888999999999999999975   6788999999999999999994 56888999999999999976543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=8.9e-22  Score=206.95  Aligned_cols=245  Identities=21%  Similarity=0.344  Sum_probs=208.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec-CccCEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-HSGPVYSAS  428 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~  428 (656)
                      ...+|.|++||.+.+.||+|-.+|.|.||++...                           ......+.+ -.+.|-+++
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~---------------------------w~~~~vi~g~~drsIE~L~   76 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN---------------------------WFLEPVIHGPEDRSIESLA   76 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCC---------------------------ceeeEEEecCCCCceeeEE
Confidence            4678999999999999999999999999998741                           112233334 457899999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee--EEecCCCC
Q 006220          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL--RIMAGHLS  506 (656)
Q Consensus       429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~--~~~~~~~~  506 (656)
                      |+ ++..|+|.+.+|.|.-||+.+.+....+....++||+++.+|.+..++.|+.||.++.++....+..  +.+....+
T Consensus        77 W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s  155 (691)
T KOG2048|consen   77 WA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS  155 (691)
T ss_pred             Ec-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence            99 4667889999999999999999999999999999999999999999999999998888887765543  34445668


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe--------cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~--------~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      .|.+++|+|++..|++|+.||.|++||+.++..+....        +...-|.++.|-.+ ..|++|.+.|+|.+||...
T Consensus       156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~  234 (691)
T KOG2048|consen  156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIF  234 (691)
T ss_pred             eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccC
Confidence            99999999999999999999999999999998776322        12234667777655 5899999999999999999


Q ss_pred             CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      |.++..+..|.+.|.+++.++++.+++++|.|+.|.-+...+...
T Consensus       235 gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  235 GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence            999999999999999999999999999999999999999887755

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.91  E-value=2.5e-23  Score=211.78  Aligned_cols=213  Identities=25%  Similarity=0.411  Sum_probs=172.3

Q ss_pred             eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce----eEEe-eCCCccEEEEEEecCCCEEEEEECCCcE
Q 006220          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~----~~~~-~~h~~~V~~l~~sp~~~~l~sgs~Dg~i  487 (656)
                      .-..+.+|+..|.++++.|.|-.|++||.|.+|++||+.....    ...+ ......|.+++|++.|..|++.+....+
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            4456889999999999999999999999999999999874322    1222 2345689999999999999999999999


Q ss_pred             EEEECCCCceeEE------------ecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCee-EEEEe-----cCCC
Q 006220          488 RIWSMDRIQPLRI------------MAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGEC-VRIFI-----GHRS  548 (656)
Q Consensus       488 ~lwd~~~~~~~~~------------~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~-~~~~~-----~h~~  548 (656)
                      +++|-+....+..            -.||...++|.+|||. .+.++|++.||++|+||+...+. ..++.     +-.-
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            9999876544332            3489999999999994 56789999999999999986543 33332     2334


Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee--e-EeeeCCCc--cEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRC--V-TPLMGHTS--CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~--~-~~~~~h~~--~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      +++.++|+++|++||+|..||+|.+||..+...  . ..-.+|..  .|+|++||++|++|++-|.|+++++||++..++
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence            789999999999999999999999999855422  1 22246775  899999999999999999999999999998765


Q ss_pred             ee
Q 006220          624 VL  625 (656)
Q Consensus       624 ~~  625 (656)
                      ..
T Consensus       399 pL  400 (641)
T KOG0772|consen  399 PL  400 (641)
T ss_pred             ch
Confidence            43

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=199.98  Aligned_cols=256  Identities=27%  Similarity=0.425  Sum_probs=192.7

Q ss_pred             eeCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          348 INTHNGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       348 ~~~~~~V~~l~fs~d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      ..|.+.++.+.-++-  ..+.|+-+..|.|+||++...-.....            ..........+.+..+.+|.+.=|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~------------~~~~~~~s~~~Pl~t~~ghk~EGy  215 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSE------------PGLEVKDSEFRPLFTFNGHKGEGY  215 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcC------------ccccccccccCceEEecccCccce
Confidence            455666666666654  455666677899999998752111110            011112244567778899999999


Q ss_pred             EEEEccCCC-EEEEEeCCCeEEEEeccCCcee---EEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCc--ee
Q 006220          426 SASFSPLGD-FILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ--PL  498 (656)
Q Consensus       426 ~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~---~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~--~~  498 (656)
                      +++|||-.. .|++|..-+.|++|...++.-.   ..+.+|+..|-+++||| ....|++||.||+|+|||++.+.  +-
T Consensus       216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~  295 (440)
T KOG0302|consen  216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA  295 (440)
T ss_pred             eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce
Confidence            999999332 4888888889999998876543   34567999999999999 45689999999999999999872  22


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC---CeeEEEEecCCCCeEEEEEcCC-CCEEEEEECCCcEEEE
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS---GECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMW  574 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~---~~~~~~~~~h~~~i~~l~~sp~-g~~L~s~~~dg~I~iw  574 (656)
                      .....|.++|+.|.|+....+||+|+.||+++|||+++   ++++..|+-|..+|++|.|+|. ...|++++.|.+|.||
T Consensus       296 ~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW  375 (440)
T KOG0302|consen  296 VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW  375 (440)
T ss_pred             eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence            23368999999999999888999999999999999985   6788999999999999999995 4678889999999999


Q ss_pred             eCCCCee----------------eEeeeCCC--ccEEEEEEcCC-CCEEEEEECCCcEEEE
Q 006220          575 DLASGRC----------------VTPLMGHT--SCVWTLAYSCE-GSLLASGSADCTVKLW  616 (656)
Q Consensus       575 D~~~~~~----------------~~~~~~h~--~~V~~l~~s~~-~~~l~sgs~Dg~I~iW  616 (656)
                      |+....-                ..-+.-|.  ..|..+.|+++ ..++++.+.||. .||
T Consensus       376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf  435 (440)
T KOG0302|consen  376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF  435 (440)
T ss_pred             EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence            9853211                11122343  46778999985 457888888874 444

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=2.2e-21  Score=207.84  Aligned_cols=270  Identities=21%  Similarity=0.361  Sum_probs=208.6

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ..++++|+.... ...|++.++..+|+|+.=+|--..+|.|..+|.|.|+++..                          
T Consensus       181 ~G~lql~Nvrt~-K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~--------------------------  233 (910)
T KOG1539|consen  181 QGRLQLWNVRTG-KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF--------------------------  233 (910)
T ss_pred             CCcEEEEEeccC-cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc--------------------------
Confidence            457888887654 44678999999999999999999999999999999999975                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEee-CCCccEEEEEEecCCCEEEEEECCCc
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRT  486 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~Dg~  486 (656)
                        .+....+..-.+.|++++|..||+ .+++|+..|.+.+||++....+.... .|.+.|....|.|....+++++.|..
T Consensus       234 --dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnS  311 (910)
T KOG1539|consen  234 --DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNS  311 (910)
T ss_pred             --CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCc
Confidence              234444444469999999999998 56677778999999998665554433 45555555555555555555555555


Q ss_pred             EEEEECCCCc----------------------------------------------------------------------
Q 006220          487 ARIWSMDRIQ----------------------------------------------------------------------  496 (656)
Q Consensus       487 i~lwd~~~~~----------------------------------------------------------------------  496 (656)
                      +++|=.+++.                                                                      
T Consensus       312 lk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~  391 (910)
T KOG1539|consen  312 LKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTE  391 (910)
T ss_pred             eeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchh
Confidence            5554222000                                                                      


Q ss_pred             -----ee--------------------------EE-----------ecCC------CCCeeEEEEcCCCCEEEEEECCCc
Q 006220          497 -----PL--------------------------RI-----------MAGH------LSDVDCVRWHINCNYIATGSSDKT  528 (656)
Q Consensus       497 -----~~--------------------------~~-----------~~~~------~~~V~~v~~~p~~~~l~tgs~dg~  528 (656)
                           ++                          +.           .-.+      ...+++++.++.|++.+.|++.|+
T Consensus       392 ~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~  471 (910)
T KOG1539|consen  392 KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT  471 (910)
T ss_pred             hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe
Confidence                 00                          00           0011      245788999999999999999999


Q ss_pred             EEEEeCCCCeeEEEE---ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-------------------------
Q 006220          529 VRLWDVSSGECVRIF---IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-------------------------  580 (656)
Q Consensus       529 V~iwd~~~~~~~~~~---~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~-------------------------  580 (656)
                      |-+|++++|-....|   ..|.++|+.++...-++.+++++.+|.+.+||.....                         
T Consensus       472 Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~  551 (910)
T KOG1539|consen  472 IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI  551 (910)
T ss_pred             EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh
Confidence            999999999988888   5899999999999889999999999999999986543                         


Q ss_pred             ----------------eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          581 ----------------CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       581 ----------------~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                                      .+..+.+|++.|++++|||||++|++++.|++|++||+.++..+-..
T Consensus       552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~  614 (910)
T KOG1539|consen  552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL  614 (910)
T ss_pred             hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence                            12234689999999999999999999999999999999998876433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=5.3e-23  Score=214.81  Aligned_cols=266  Identities=21%  Similarity=0.349  Sum_probs=222.3

Q ss_pred             ceecCCCCC----Cce-eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220          331 RVHLSSAAL----PSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (656)
Q Consensus       331 ~v~l~~~~~----ps~-~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (656)
                      .+++|....    |+. +..++..|..-|+.+....+|+.|++++.|.+|++|+.....                     
T Consensus        48 ~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~---------------------  106 (735)
T KOG0308|consen   48 IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN---------------------  106 (735)
T ss_pred             eEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc---------------------
Confidence            556665422    223 344566677789999999999999999999999999987421                     


Q ss_pred             CCCCCceeeEEeecCccCEEEEEE-ccCCCEEEEEeCCCeEEEEeccCCce--eE--------Eee-CCCccEEEEEEec
Q 006220          406 GPNGRKRSYTLYQGHSGPVYSASF-SPLGDFILSSSADTTIRLWSTKLNAN--LV--------CYK-GHNYPVWDVQFNP  473 (656)
Q Consensus       406 ~~~~~~~~~~~l~~h~~~V~~l~~-spd~~~L~s~s~Dg~I~lwd~~~~~~--~~--------~~~-~h~~~V~~l~~sp  473 (656)
                           ......+..|..-|.|+++ .++...++||+-|+.|.+||+.++..  +.        ... |+..+|.+++.++
T Consensus       107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~  181 (735)
T KOG0308|consen  107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ  181 (735)
T ss_pred             -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence                 1234567789999999999 77888999999999999999997732  21        122 7888999999999


Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEE
Q 006220          474 QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL  553 (656)
Q Consensus       474 ~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l  553 (656)
                      .|..|++|+..+.+++||.++.+.+..+.||...|.++..+++|+.++++|+||+|++||+...+|+.++..|...|.++
T Consensus       182 t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL  261 (735)
T KOG0308|consen  182 TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL  261 (735)
T ss_pred             cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       554 ~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ..+|+=..+++|+.||.|..=|+++......+-....+|..+..+.+.+-+-+++.|+.|+-|......
T Consensus       262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~  330 (735)
T KOG0308|consen  262 QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI  330 (735)
T ss_pred             eeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence            999999999999999999999998854333333445677777777655556788899999999876543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=4.2e-23  Score=219.42  Aligned_cols=251  Identities=19%  Similarity=0.332  Sum_probs=196.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ....+++..+++-..++++ ....++||.+........               +.      .....-+.-.-.+..|.|+
T Consensus        39 k~~~nAIs~nr~~~qiv~A-Grs~lklyai~~~~~~~~---------------~~------~~~k~kqn~~~S~~DVkW~   96 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVA-GRSLLKLYAINPNDFSEK---------------CN------HRFKTKQNKFYSAADVKWG   96 (839)
T ss_pred             ccccceEeecCCcceeEEe-cccceeeEeeCcccCCcc---------------ee------eecccccceeeehhhcccc
Confidence            4457778888888778777 456788888764211100               00      0000001111345567787


Q ss_pred             c-CCCEEEEEeCCCeEEEEeccC---CceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220          431 P-LGDFILSSSADTTIRLWSTKL---NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (656)
Q Consensus       431 p-d~~~L~s~s~Dg~I~lwd~~~---~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~  505 (656)
                      . +.++|++++..|.|.+||+..   ...+..+..|...+.++.|++ ..++|++||.||+|++||++..+....+.+..
T Consensus        97 ~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nS  176 (839)
T KOG0269|consen   97 QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNS  176 (839)
T ss_pred             cchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccc
Confidence            4 356899999999999999986   455677889999999999999 56789999999999999999999999999999


Q ss_pred             CCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220          506 SDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (656)
Q Consensus       506 ~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~  583 (656)
                      ..|..|+|+| .+++++++...|.+++||+|.. ++...+.+|.++|.|+.|+|++.+|||||.|+.|+|||..+++.-.
T Consensus       177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~  256 (839)
T KOG0269|consen  177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP  256 (839)
T ss_pred             hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence            9999999998 5788999999999999999864 6778899999999999999999999999999999999997655433


Q ss_pred             eeeCCC-ccEEEEEEcCCCC-EEEEEE--CCCcEEEEeCCCCCc
Q 006220          584 PLMGHT-SCVWTLAYSCEGS-LLASGS--ADCTVKLWDVTTSTK  623 (656)
Q Consensus       584 ~~~~h~-~~V~~l~~s~~~~-~l~sgs--~Dg~I~iWd~~~~~~  623 (656)
                      ...-++ .+|..+.|-|..+ .|++++  .|-.|+|||++.+--
T Consensus       257 ~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI  300 (839)
T KOG0269|consen  257 KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI  300 (839)
T ss_pred             eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc
Confidence            333333 7899999999755 466655  577899999987543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=4.6e-22  Score=208.88  Aligned_cols=312  Identities=16%  Similarity=0.231  Sum_probs=229.6

Q ss_pred             ccceecCCCCCCc--eeEEEEeeCCCCeEEEEEcCC-----------CCEEEEEeCCCcEEEEEcCCCCcccccc--cCC
Q 006220          329 RNRVHLSSAALPS--VSFYTFINTHNGLNCASISQD-----------GSLVAGGFSDSSLKVWDMAKLGQQAVSS--GLQ  393 (656)
Q Consensus       329 ~~~v~l~~~~~ps--~~~~~~~~~~~~V~~l~fs~d-----------g~~La~g~~dg~I~Iwdl~~~~~~~~~~--~~~  393 (656)
                      ...+++|+..-++  ..++.++-|...|+.+.--|.           ...+.+++.|++|++|++.......+..  ...
T Consensus       345 dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils  424 (1080)
T KOG1408|consen  345 DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS  424 (1080)
T ss_pred             CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch
Confidence            3467888765443  336677888888888876541           1348899999999999998622111100  000


Q ss_pred             C----CCCCCCCcccc---CCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccE
Q 006220          394 G----ENDTTPREDII---GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV  466 (656)
Q Consensus       394 ~----~~~~~~~~~~~---~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V  466 (656)
                      .    .........++   ......+......+....|.+++.||+|++|++|..-|++++|++..-.....+..|...|
T Consensus       425 ~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEi  504 (1080)
T KOG1408|consen  425 ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEI  504 (1080)
T ss_pred             hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccccee
Confidence            0    00000000000   0001111222233455679999999999999999999999999999888888889999999


Q ss_pred             EEEEEec---CCCEEEEEECCCcEEEEECCC-CceeEEecCCCCCeeEEEEcCCC--CEEEEEECCCcEEEEeCCCCeeE
Q 006220          467 WDVQFNP---QGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECV  540 (656)
Q Consensus       467 ~~l~~sp---~~~~l~sgs~Dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~--~~l~tgs~dg~V~iwd~~~~~~~  540 (656)
                      .|+.|+.   ...+|++++.|+.|++||+.. ..++.++.+|.+.|++|.|.-+|  ..+++++.|+.|.+--.+.....
T Consensus       505 lcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g  584 (1080)
T KOG1408|consen  505 LCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSG  584 (1080)
T ss_pred             EEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCc
Confidence            9999986   356899999999999999865 45678888999999999999877  67888989988755433333333


Q ss_pred             EEEecC-----CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC---CCccEEEEEEcCCCCEEEEEECCCc
Q 006220          541 RIFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---HTSCVWTLAYSCEGSLLASGSADCT  612 (656)
Q Consensus       541 ~~~~~h-----~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~---h~~~V~~l~~s~~~~~l~sgs~Dg~  612 (656)
                      +.|..|     ...+..|+..|..+++++++.|..|+|||+.+|+..+.|++   |.+....+...|.|.||++.+.|.+
T Consensus       585 ~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt  664 (1080)
T KOG1408|consen  585 RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT  664 (1080)
T ss_pred             eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc
Confidence            344333     24688999999999999999999999999999999999974   6678889999999999999999999


Q ss_pred             EEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEc
Q 006220          613 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVL  655 (656)
Q Consensus       613 I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ft  655 (656)
                      +.++|+-+++.+               +...+|+..|..|.|+
T Consensus       665 l~~~Df~sgEcv---------------A~m~GHsE~VTG~kF~  692 (1080)
T KOG1408|consen  665 LCFVDFVSGECV---------------AQMTGHSEAVTGVKFL  692 (1080)
T ss_pred             eEEEEeccchhh---------------hhhcCcchheeeeeec
Confidence            999999998754               4445566666666665

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=2.1e-22  Score=192.30  Aligned_cols=209  Identities=28%  Similarity=0.495  Sum_probs=176.3

Q ss_pred             eecCccCEEEEEEcc-CCCEEEEEeCCCeEEEEeccCCc------------ee---EEeeCCCccEEEEEEec-CCCEEE
Q 006220          417 YQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNA------------NL---VCYKGHNYPVWDVQFNP-QGHYFA  479 (656)
Q Consensus       417 l~~h~~~V~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~------------~~---~~~~~h~~~V~~l~~sp-~~~~l~  479 (656)
                      ...|.+.|.++...+ .|+++++|+.||.|.+||++...            ++   ..-.+|...|.++.|-| |...|.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            446889999999987 57899999999999999997543            11   11236889999999999 667899


Q ss_pred             EEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcC---CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEc
Q 006220          480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS  556 (656)
Q Consensus       480 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p---~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~s  556 (656)
                      +++.|.++++||+.+.+....|. ..+.|.+-+|+|   ....+|+|..+-.|++.|+.+|.+..++.||.+.|.++.|+
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS  197 (397)
T ss_pred             cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence            99999999999999988877776 446788888887   34578899999999999999999999999999999999999


Q ss_pred             CCCCE-EEEEECCCcEEEEeCCCC-eeeEee--------------eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          557 PDGRY-MASGDEDGTIMMWDLASG-RCVTPL--------------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       557 p~g~~-L~s~~~dg~I~iwD~~~~-~~~~~~--------------~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      |...+ |++|+.||.|++||++.. .|+..+              ..|.+.|.+++|+.++.++++++.|..+++|+..+
T Consensus       198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence            98775 678999999999999754 233222              35778899999999999999999999999999998


Q ss_pred             CCceee
Q 006220          621 STKVLK  626 (656)
Q Consensus       621 ~~~~~~  626 (656)
                      +.....
T Consensus       278 G~ntl~  283 (397)
T KOG4283|consen  278 GRNTLR  283 (397)
T ss_pred             Cccccc
Confidence            876543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=7.3e-22  Score=199.09  Aligned_cols=265  Identities=16%  Similarity=0.265  Sum_probs=214.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      .+++|+|+.|+|...+|.+|+.||.++||.++...                          ...+..+.--..||.+..|
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~--------------------------N~~lqS~~l~~fPi~~a~f  265 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV--------------------------NPKLQSIHLEKFPIQKAEF  265 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCcc--------------------------ChhheeeeeccCccceeee
Confidence            45789999999999999999999999999998522                          1233344445689999999


Q ss_pred             ccCCC-EEEEEeCCCeEEEEeccCCceeE--EeeCCC-ccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220          430 SPLGD-FILSSSADTTIRLWSTKLNANLV--CYKGHN-YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (656)
Q Consensus       430 spd~~-~L~s~s~Dg~I~lwd~~~~~~~~--~~~~h~-~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~  505 (656)
                      .|+|. .+++++....++.||+.+.+...  ...++. ..+.....++++++++..|..|.|.+....++..+..+. -.
T Consensus       266 ~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ie  344 (514)
T KOG2055|consen  266 APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IE  344 (514)
T ss_pred             cCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-ec
Confidence            99999 88999999999999998776533  223332 346778899999999999999999999999998888876 44


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC-CeEEEEEcCCCCEEEEEECCCcEEEEeCCC------
Q 006220          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLAS------  578 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~-~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~------  578 (656)
                      +.|..++|+.+++.|++++.+|.|++||+++..+++.|....+ .-++++.|++|.|||+|+..|.|.|||..+      
T Consensus       345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN  424 (514)
T ss_pred             cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC
Confidence            7899999999999999999999999999999999999985433 346788889999999999999999999754      


Q ss_pred             CeeeEeeeCCCccEEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCCceeecccccCCccccccccccCCCC---CeEEEE
Q 006220          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKST---PVYSLQ  653 (656)
Q Consensus       579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~---pv~sv~  653 (656)
                      .++++.+..-...|+++.|++++++||.+|  .+..+++-.+.+.+..               +-+|+.++   .|.||+
T Consensus       425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF---------------sNfP~~n~~vg~vtc~a  489 (514)
T KOG2055|consen  425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF---------------SNFPTSNTKVGHVTCMA  489 (514)
T ss_pred             CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee---------------ccCCCCCCcccceEEEE
Confidence            356666666678899999999999998887  4678888888765433               23444443   367788


Q ss_pred             EcC
Q 006220          654 VLR  656 (656)
Q Consensus       654 Ftr  656 (656)
                      |++
T Consensus       490 FSP  492 (514)
T KOG2055|consen  490 FSP  492 (514)
T ss_pred             ecC
Confidence            875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=1.5e-21  Score=209.14  Aligned_cols=198  Identities=23%  Similarity=0.381  Sum_probs=180.4

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe---eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                      ..+++++.++.|++.+.|+..|+|-+|++.+|-....|   ..|..+|.+++...-++.+++++.+|.+++||......+
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            56789999999999999999999999999999888888   579999999999988999999999999999999988877


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      ..+. -...+.++.+|.....++++..|-.|+++|+.+.+.+|.|.||...|++++|||||+||++++.|++|++||+.+
T Consensus       529 ~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  529 KSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             eeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence            7766 335688999999889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeEeeeCCCccEEEEEEcCCCCEEEEEECC-CcEEEEeCCCC
Q 006220          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-CTVKLWDVTTS  621 (656)
Q Consensus       579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D-g~I~iWd~~~~  621 (656)
                      +.++-.+. -..++.++.|||+|.+||+...| .-|++|.-.+.
T Consensus       608 ~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNksl  650 (910)
T KOG1539|consen  608 GTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSL  650 (910)
T ss_pred             cceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence            99987764 45678999999999999999998 67999986553

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.1e-22  Score=187.93  Aligned_cols=204  Identities=27%  Similarity=0.406  Sum_probs=174.0

Q ss_pred             eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc---eeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEEEEE
Q 006220          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWS  491 (656)
Q Consensus       417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lwd  491 (656)
                      -..|...|..+...--|+.|++|+.|++|+|+..+...   .+..+.||.+|||.++|-.  .|.+||+++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            34688888888777779999999999999999998654   4678899999999999976  899999999999999999


Q ss_pred             CCCCc--eeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC---eeEEEEecCCCCeEEEEEcCC---C--
Q 006220          492 MDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMSPD---G--  559 (656)
Q Consensus       492 ~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~---~~~~~~~~h~~~i~~l~~sp~---g--  559 (656)
                      -.+++  .......|...|++|+|.|.  |-.|+++++||.|.+.+.+..   ...+....|.-.|++++|.|.   |  
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            88764  33456689999999999885  568899999999999998754   234556789999999999995   4  


Q ss_pred             ---------CEEEEEECCCcEEEEeCCCCe--eeEeeeCCCccEEEEEEcCCC----CEEEEEECCCcEEEEeCCC
Q 006220          560 ---------RYMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEG----SLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       560 ---------~~L~s~~~dg~I~iwD~~~~~--~~~~~~~h~~~V~~l~~s~~~----~~l~sgs~Dg~I~iWd~~~  620 (656)
                               +.|++|+.|..|+||+..++.  .-.++.+|.+-|+.++|.|.-    .+||+++.||+|.||-...
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence                     569999999999999998763  334578999999999999953    5899999999999998874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=8.6e-22  Score=207.19  Aligned_cols=291  Identities=25%  Similarity=0.361  Sum_probs=212.7

Q ss_pred             cceecCCCCCCc-eeEEEEeeCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220          330 NRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGS---LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (656)
Q Consensus       330 ~~v~l~~~~~ps-~~~~~~~~~~~~V~~l~fs~dg~---~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (656)
                      ..+.++.....+ .....+.+|.+-|.+++|..-+.   +||+|++|.+||||.+........ ...........+....
T Consensus       169 ~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~-~~~e~~~t~~~~~~~f  247 (764)
T KOG1063|consen  169 FVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDS-NEREDSLTTLSNLPVF  247 (764)
T ss_pred             eEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccc-cccccccccccCCcee
Confidence            345555443222 22345678899999999986544   899999999999999874321110 0000000000000000


Q ss_pred             CCC----CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc---------------------------
Q 006220          406 GPN----GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---------------------------  454 (656)
Q Consensus       406 ~~~----~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~---------------------------  454 (656)
                      ...    -.......+.||.+.|+++.|+|.+..|+++|.|.++.+|...+..                           
T Consensus       248 ~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n  327 (764)
T KOG1063|consen  248 MILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN  327 (764)
T ss_pred             eeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC
Confidence            000    0000113456999999999999999999999999999999643210                           


Q ss_pred             -------------------------eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC----------Cc---
Q 006220          455 -------------------------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR----------IQ---  496 (656)
Q Consensus       455 -------------------------~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~----------~~---  496 (656)
                                               ....+.||...|.+++|+|.|.++++.|.|.+-|++-.-.          ++   
T Consensus       328 ~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG  407 (764)
T KOG1063|consen  328 SNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG  407 (764)
T ss_pred             CCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccc
Confidence                                     0112357888999999999999999999999888763210          00   


Q ss_pred             --------------------------------------------------------------------------------
Q 006220          497 --------------------------------------------------------------------------------  496 (656)
Q Consensus       497 --------------------------------------------------------------------------------  496 (656)
                                                                                                      
T Consensus       408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~  487 (764)
T KOG1063|consen  408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV  487 (764)
T ss_pred             ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence                                                                                            


Q ss_pred             -----------------------------eeEEecCCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeEEE
Q 006220          497 -----------------------------PLRIMAGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRI  542 (656)
Q Consensus       497 -----------------------------~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-----g~V~iwd~~~~~~~~~  542 (656)
                                                   .+..+.||...|.|++.+|+++.+|+++..     ..|++|+..+...+..
T Consensus       488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~  567 (764)
T KOG1063|consen  488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQE  567 (764)
T ss_pred             eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhe
Confidence                                         012234788889999999999999998754     4699999999998889


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe----eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          543 FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       543 ~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~----~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      +.+|.-.|+.|+|||||++|++.+.|.++.+|......    .....+.|+.-|++++|+|++.+++|+|.|.+|+||..
T Consensus       568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  568 LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence            99999999999999999999999999999999875432    23336789999999999999999999999999999999


Q ss_pred             CCC
Q 006220          619 TTS  621 (656)
Q Consensus       619 ~~~  621 (656)
                      ...
T Consensus       648 ~~~  650 (764)
T KOG1063|consen  648 PDL  650 (764)
T ss_pred             cCc
Confidence            886

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=4.2e-21  Score=185.23  Aligned_cols=232  Identities=19%  Similarity=0.252  Sum_probs=190.4

Q ss_pred             EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      ...+.|..++.+++|.+ ...+++|+.||.|+.+|+...                             ....+..|..+|
T Consensus        48 ~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~-----------------------------~~~~igth~~~i   97 (323)
T KOG1036|consen   48 KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG-----------------------------NEDQIGTHDEGI   97 (323)
T ss_pred             hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCC-----------------------------cceeeccCCCce
Confidence            34567888999999987 456888999999999999852                             234456799999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--  502 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~--  502 (656)
                      .|+.+++-...+++||.|++|++||.+.......+. ....|.++..+  |+.|++|+.|..+.+||+++........  
T Consensus        98 ~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS  174 (323)
T KOG1036|consen   98 RCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRES  174 (323)
T ss_pred             EEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccc
Confidence            999999988899999999999999998755544444 34478887775  7899999999999999998765433221  


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC----eeEEEEecCCC---------CeEEEEEcCCCCEEEEEECCC
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG----ECVRIFIGHRS---------MILSLAMSPDGRYMASGDEDG  569 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~----~~~~~~~~h~~---------~i~~l~~sp~g~~L~s~~~dg  569 (656)
                      .-.-.+.||++-|++.-.++++-||.|.+=.+...    ..-..|+.|..         ||++|+|+|-...|+||+.||
T Consensus       175 ~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG  254 (323)
T KOG1036|consen  175 SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG  254 (323)
T ss_pred             cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc
Confidence            33456899999999999999999999888666554    23345666642         799999999999999999999


Q ss_pred             cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC
Q 006220          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA  609 (656)
Q Consensus       570 ~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~  609 (656)
                      .|.+||+.+.+.+..+......|.+++|+.+|..||.++.
T Consensus       255 ~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  255 IVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            9999999999999999888888999999999999999874

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=4.1e-21  Score=184.47  Aligned_cols=250  Identities=19%  Similarity=0.248  Sum_probs=200.3

Q ss_pred             HhccceecCCCCCC-ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220          327 DLRNRVHLSSAALP-SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (656)
Q Consensus       327 ~~~~~v~l~~~~~p-s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (656)
                      .....+++|..... .........|.++|.|++|+.||+.+++|+.|+.+++||+...                      
T Consensus        47 SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~----------------------  104 (347)
T KOG0647|consen   47 SWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG----------------------  104 (347)
T ss_pred             ccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC----------------------
Confidence            34567777765331 1112345788999999999999999999999999999999852                      


Q ss_pred             CCCCCceeeEEeecCccCEEEEEEccCCC--EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC
Q 006220          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH  483 (656)
Q Consensus       406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~--~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~  483 (656)
                             .......|.++|.++.|-+...  .|++||.|.+|+.||++....+.++.- ...+.++..  ....++++..
T Consensus       105 -------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata  174 (347)
T KOG0647|consen  105 -------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATA  174 (347)
T ss_pred             -------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEec
Confidence                   3455677999999999987665  799999999999999998888777653 345665554  3557888899


Q ss_pred             CCcEEEEECCCCcee--EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--eeEEEEecCCC---------Ce
Q 006220          484 DRTARIWSMDRIQPL--RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRS---------MI  550 (656)
Q Consensus       484 Dg~i~lwd~~~~~~~--~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~--~~~~~~~~h~~---------~i  550 (656)
                      ++.|.+|+++++...  +.-..-.-.+.||+..++....+.|+-.|.+.+..+..+  +.-..|+.|..         .|
T Consensus       175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV  254 (347)
T KOG0647|consen  175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV  254 (347)
T ss_pred             CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence            999999999765322  112223346889999998888899999999999998876  44455666652         57


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEE
Q 006220          551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS  608 (656)
Q Consensus       551 ~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs  608 (656)
                      ++|+|+|....|+++|.||++.+||-.....++....|..+|++.+|+.+|.++|-+.
T Consensus       255 Nsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  255 NSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             cceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            8899999999999999999999999988888999999999999999999999887664

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=2.1e-20  Score=180.61  Aligned_cols=237  Identities=17%  Similarity=0.282  Sum_probs=190.4

Q ss_pred             EEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeE
Q 006220          366 VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTI  445 (656)
Q Consensus       366 La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I  445 (656)
                      +++|+....|.=+++..........                ..........+..|.++|++++.+  +.+++|||.|-+|
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s----------------~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI   65 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDS----------------VKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETI   65 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccc----------------cceeeeccccccccccceeEEEec--ceeEeccCCCCcE
Confidence            6778888777777766422000000                000112345577899999999997  8999999999999


Q ss_pred             EEEeccCCceeEEeeCCCccEEEEEEecCCC--EEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEE
Q 006220          446 RLWSTKLNANLVCYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG  523 (656)
Q Consensus       446 ~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg  523 (656)
                      +|||+.....+..+-.|.+.|+++.|.+.-.  .|++|+.||.|.+|+...-..+..+.+|.+.|+.++.||.++.-++.
T Consensus        66 ~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsV  145 (362)
T KOG0294|consen   66 HIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSV  145 (362)
T ss_pred             EEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEE
Confidence            9999999999999999999999999998664  89999999999999999999999999999999999999999999999


Q ss_pred             ECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCE
Q 006220          524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL  603 (656)
Q Consensus       524 s~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~  603 (656)
                      +.|+.+++||+-+|+.-....- ....+.+.|+|.|.+++.++.+ .|-||.+.+......+... ..+.++.|- ++..
T Consensus       146 g~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~  221 (362)
T KOG0294|consen  146 GGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSE  221 (362)
T ss_pred             cCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCce
Confidence            9999999999998876655442 2334559999999988888765 6999999887766555433 456677775 5678


Q ss_pred             EEEEECCCcEEEEeCCCCCce
Q 006220          604 LASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       604 l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      |++|+.|+.|++||..+....
T Consensus       222 L~vG~d~~~i~~~D~ds~~~~  242 (362)
T KOG0294|consen  222 LLVGGDNEWISLKDTDSDTPL  242 (362)
T ss_pred             EEEecCCceEEEeccCCCccc
Confidence            999999999999999885543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=8e-20  Score=186.00  Aligned_cols=233  Identities=21%  Similarity=0.418  Sum_probs=188.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      .-|.|++|.++|. +++|.++|.|.||+...                            .+.......|.+.|++++.-.
T Consensus       247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~----------------------------~~~~k~~~aH~ggv~~L~~lr  297 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-VITGDSGGNILIWSKGT----------------------------NRISKQVHAHDGGVFSLCMLR  297 (626)
T ss_pred             eEEEEEEEcCCCC-EEeecCCceEEEEeCCC----------------------------ceEEeEeeecCCceEEEEEec
Confidence            4599999999998 67899999999999643                            223333448999999999998


Q ss_pred             CCCEEEEEeCCCeEEEEeccCCc----------------------------------------eeEEeeCCCccEEEEEE
Q 006220          432 LGDFILSSSADTTIRLWSTKLNA----------------------------------------NLVCYKGHNYPVWDVQF  471 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~----------------------------------------~~~~~~~h~~~V~~l~~  471 (656)
                      +|.+ +||+.|..|..||-.-.+                                        -.....+|....|.++.
T Consensus       298 ~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~  376 (626)
T KOG2106|consen  298 DGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT  376 (626)
T ss_pred             CccE-eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence            8875 559999999999832000                                        01123568888999999


Q ss_pred             ecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeE
Q 006220          472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL  551 (656)
Q Consensus       472 sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~  551 (656)
                      +|+...++++++|+.+++|+  ..+++.... -..++.|+.|||.| .+|.|+..|...+.|..+...+..-.. ..+++
T Consensus       377 hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls  451 (626)
T KOG2106|consen  377 HPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLS  451 (626)
T ss_pred             CCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceE
Confidence            99999999999999999999  334443322 34678999999999 999999999999999999776665554 88999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCC-CeeeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          552 SLAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       552 ~l~~sp~g~~L~s~~~dg~I~iwD~~~-~~~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      ++.|+|+|.+||.|+.|+.|+||-+.. |........ |..+|+.+.||+|+++|.+-+.|-.|-.|.-.
T Consensus       452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  452 VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence            999999999999999999999998864 444444432 33899999999999999999999999999443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=6.5e-21  Score=193.26  Aligned_cols=269  Identities=18%  Similarity=0.225  Sum_probs=205.9

Q ss_pred             hccceecCCCC-CCceeEEEEeeCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220          328 LRNRVHLSSAA-LPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (656)
Q Consensus       328 ~~~~v~l~~~~-~ps~~~~~~~~~~~~V~~l~fs~dg~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (656)
                      ..+.++||+.+ +....+|......-++.+++|+....++ |+.+.|..|++|.-... .                    
T Consensus        10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~--------------------   68 (673)
T KOG4378|consen   10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-T--------------------   68 (673)
T ss_pred             cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC-C--------------------
Confidence            45667777653 3344455555556679999998876432 33345778999975531 0                    


Q ss_pred             CCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC
Q 006220          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (656)
Q Consensus       406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg  485 (656)
                         ..........+.  .-.|++......++++|+..+.|+|||++...+.+.+++|...|+++.++....|||+++..|
T Consensus        69 ---~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG  143 (673)
T KOG4378|consen   69 ---PEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGG  143 (673)
T ss_pred             ---Cccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCC
Confidence               001122222222  223444444458999999999999999997777888899999999999999999999999999


Q ss_pred             cEEEEECCCCceeEEecCC-CCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCeeEEEE-ecCCCCeEEEEEcCCC-CE
Q 006220          486 TARIWSMDRIQPLRIMAGH-LSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDG-RY  561 (656)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~-~~~V~~v~~~p~~~~l-~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g-~~  561 (656)
                      .|.+..+.++.....|... ...|.-+.|||..+.+ .+++.+|.|.+||+....+...+ ..|..|...|+|+|.. .+
T Consensus       144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l  223 (673)
T KOG4378|consen  144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL  223 (673)
T ss_pred             cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence            9999999988777777644 3446689999977654 56889999999999877666544 5799999999999954 57


Q ss_pred             EEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       562 L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      |++.+.|..|.+||+++.+....+. ...+..+++|+++|.+|+.|...|.|..||++..+.
T Consensus       224 ~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  224 LVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             EEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence            8899999999999999777666653 345789999999999999999999999999987553

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=8e-22  Score=193.31  Aligned_cols=207  Identities=20%  Similarity=0.343  Sum_probs=175.1

Q ss_pred             eEEeecCccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220          414 YTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (656)
Q Consensus       414 ~~~l~~h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~  492 (656)
                      +..+.||...|+|++=+|.. ..+++|+.||.|++||+....++..++.|.+.|.++++..  ..++++|.|.+|+.|.+
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            34468999999999999977 6799999999999999999999999999999999999986  67888999998888864


Q ss_pred             C--------------------------------------CCceeEEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEe
Q 006220          493 D--------------------------------------RIQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWD  533 (656)
Q Consensus       493 ~--------------------------------------~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd  533 (656)
                      +                                      ...|+..+.-....|.++.|+|.. ..|+++++|+.|.+||
T Consensus       137 ~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD  216 (433)
T KOG0268|consen  137 DGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD  216 (433)
T ss_pred             cCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence            3                                      222444455455668899999965 4566777999999999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCc
Q 006220          534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT  612 (656)
Q Consensus       534 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~  612 (656)
                      ++++.+++... ....-+.|+|+|.+-.+++|++|..++.||++.. .++....+|.+.|.+++|||.|+-+++||.|.+
T Consensus       217 ~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks  295 (433)
T KOG0268|consen  217 LRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS  295 (433)
T ss_pred             cccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce
Confidence            99999887665 2345678999998888999999999999999864 466777899999999999999999999999999


Q ss_pred             EEEEeCCCCCc
Q 006220          613 VKLWDVTTSTK  623 (656)
Q Consensus       613 I~iWd~~~~~~  623 (656)
                      |+||.+..+..
T Consensus       296 IRIf~~~~~~S  306 (433)
T KOG0268|consen  296 IRIFPVNHGHS  306 (433)
T ss_pred             EEEeecCCCcc
Confidence            99999987653

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=3.5e-20  Score=179.43  Aligned_cols=252  Identities=22%  Similarity=0.373  Sum_probs=191.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc--
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS--  430 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s--  430 (656)
                      -...+.|||||+.|++-+.|..+++|++....-......               +.........-......|+..+|-  
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~---------------~~~~~~~~~~r~~eg~tvydy~wYs~  115 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADG---------------PLNFSKHLSYRYQEGETVYDYCWYSR  115 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCC---------------ccccccceeEEeccCCEEEEEEeeec
Confidence            356789999999999999999999999864211000000               000011111122234678888886  


Q ss_pred             -----cCCCEEEEEeCCCeEEEEeccCCceeEEeeC--CCc---cEEEEEEecCCCEEEEEECCCcEEEEEC-CCCce--
Q 006220          431 -----PLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNY---PVWDVQFNPQGHYFASSSHDRTARIWSM-DRIQP--  497 (656)
Q Consensus       431 -----pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~---~V~~l~~sp~~~~l~sgs~Dg~i~lwd~-~~~~~--  497 (656)
                           |+..++++.+.+.-|++||.-+++....+.+  |..   ...+++|+|||.+|++| ..++|+++|+ +.+..  
T Consensus       116 M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~  194 (406)
T KOG2919|consen  116 MKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCP  194 (406)
T ss_pred             cccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCc
Confidence                 5677899999999999999999998877765  322   35689999999999876 4689999999 33332  


Q ss_pred             eEEe-----cCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCc
Q 006220          498 LRIM-----AGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGT  570 (656)
Q Consensus       498 ~~~~-----~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~  570 (656)
                      +...     .+..+-+.|++||| +...+++|+....+-||.-..+.++..+.+|.+.|+.++|.++|+.|++|. .|-.
T Consensus       195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dk  274 (406)
T KOG2919|consen  195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDK  274 (406)
T ss_pred             chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCe
Confidence            1111     13367789999999 556899999999999999888999999999999999999999999999986 5778


Q ss_pred             EEEEeCCC-CeeeEeeeCCCc-cEEE--EEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          571 IMMWDLAS-GRCVTPLMGHTS-CVWT--LAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       571 I~iwD~~~-~~~~~~~~~h~~-~V~~--l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      |..||++. +.++..+..|.+ .-..  +...|++++|++|+.||.|++||+..
T Consensus       275 Il~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  275 ILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             EEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            99999985 456666766654 2233  44578899999999999999999988

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=9.6e-22  Score=217.98  Aligned_cols=254  Identities=22%  Similarity=0.434  Sum_probs=208.8

Q ss_pred             eeCCCCeEEEEEcCCCCE----EEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          348 INTHNGLNCASISQDGSL----VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~----La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      +......++++|++.|..    ||.|..||.|.+||.....                      .+.....+.....|.++
T Consensus        61 ~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~----------------------~~~~~~~la~~~~h~G~  118 (1049)
T KOG0307|consen   61 LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII----------------------ANASEEVLATKSKHTGP  118 (1049)
T ss_pred             ccccccceeeeecccCCCccceeeccccCCceEEecchhhc----------------------cCcchHHHhhhcccCCc
Confidence            344567889999987766    8999999999999976420                      11223345567789999


Q ss_pred             EEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEee--CCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCCceeE
Q 006220          424 VYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLR  499 (656)
Q Consensus       424 V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~~~~~  499 (656)
                      |..+.|++... +|++|+.||.|.|||+...+.-..+.  .....|.+++|+.. .+.|++++.+|++.|||++..+++.
T Consensus       119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii  198 (1049)
T KOG0307|consen  119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII  198 (1049)
T ss_pred             eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence            99999999776 99999999999999998755544442  24567999999984 5678999999999999999999988


Q ss_pred             EecCCCC--CeeEEEEcCCC-CEEEEEECC---CcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCCC-CEEEEEECCCcE
Q 006220          500 IMAGHLS--DVDCVRWHINC-NYIATGSSD---KTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTI  571 (656)
Q Consensus       500 ~~~~~~~--~V~~v~~~p~~-~~l~tgs~d---g~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~g-~~L~s~~~dg~I  571 (656)
                      .+..+.+  .+..++|||+. ..|++++.|   -.|.+||+|. ...++++.+|...|.++.|++.+ ++|++++.|+.|
T Consensus       199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i  278 (1049)
T KOG0307|consen  199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI  278 (1049)
T ss_pred             ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence            8876655  46789999976 456666554   3699999985 45778889999999999999966 899999999999


Q ss_pred             EEEeCCCCeeeEeeeCCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCCc
Q 006220          572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       572 ~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      .+|+.++++.+..+......+..+.|+|... .+++++-||.|.|+.+.....
T Consensus       279 i~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~  331 (1049)
T KOG0307|consen  279 ICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT  331 (1049)
T ss_pred             eEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence            9999999999999988778899999999654 888999999999999987663

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.3e-20  Score=181.99  Aligned_cols=204  Identities=25%  Similarity=0.391  Sum_probs=162.8

Q ss_pred             EeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee--EEe--eCCCccEEEEEEecCCCEEEEEE-CCCcEEEE
Q 006220          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL--VCY--KGHNYPVWDVQFNPQGHYFASSS-HDRTARIW  490 (656)
Q Consensus       416 ~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~--~~~--~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lw  490 (656)
                      .+.+|.+.|++++|+.||+.|++++.|++|++|+++.....  ..+  .-.-..-+.+.|.||...+++.. ...++++|
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            47799999999999999999999999999999999865431  111  11122456789999987765554 55689999


Q ss_pred             ECCCCc----ee--------EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC
Q 006220          491 SMDRIQ----PL--------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD  558 (656)
Q Consensus       491 d~~~~~----~~--------~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~  558 (656)
                      -+...+    +.        ..-..|.-.+-.+-...++.+|++++.|..|.+|+++ |+.+..+......-+..+.||+
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~  239 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD  239 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence            764321    11        1122455566667777789999999999999999998 8888888777777788899999


Q ss_pred             CCEEEEEECCCcEEEEeCC---CC-----eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          559 GRYMASGDEDGTIMMWDLA---SG-----RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       559 g~~L~s~~~dg~I~iwD~~---~~-----~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      |++|++++-.--|++|.+-   .|     ..+..++||...|..++||+++..+++.+.||+++|||.+-
T Consensus       240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            9999999998999999863   22     35667889999999999999999999999999999999864

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=1.1e-20  Score=195.68  Aligned_cols=278  Identities=18%  Similarity=0.289  Sum_probs=219.1

Q ss_pred             CCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccC--------------------CCCC-
Q 006220          338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL--------------------QGEN-  396 (656)
Q Consensus       338 ~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~--------------------~~~~-  396 (656)
                      ..|..|.+.+.+|.+.|.|+...|.|.+||+|+.||+|+||.+.++.+.......                    .+.. 
T Consensus       387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~  466 (733)
T KOG0650|consen  387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECV  466 (733)
T ss_pred             CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCce
Confidence            4578888899999999999999999999999999999999999876543221100                    0000 


Q ss_pred             -------C---C----------CC--Cc-----cccCCC---CCceeeEEeecCccCEEEEEEccCCCEEEEEeCC---C
Q 006220          397 -------D---T----------TP--RE-----DIIGPN---GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD---T  443 (656)
Q Consensus       397 -------~---~----------~~--~~-----~~~~~~---~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~D---g  443 (656)
                             .   .          ..  ..     ......   .....+.....|..+|..+.|+..|.+|++...+   .
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence                   0   0          00  00     000000   0111234556789999999999999999987664   4


Q ss_pred             eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEE
Q 006220          444 TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG  523 (656)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg  523 (656)
                      .|.|.++.......-++-..+.|.++.|+|...+|++++. ..|++||+.....+..+......|..++.||+|..|+.|
T Consensus       547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g  625 (733)
T KOG0650|consen  547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG  625 (733)
T ss_pred             eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence            6889998877666666556678999999999999998876 789999998877777777777889999999999999999


Q ss_pred             ECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC------CC---eeeEeeeCCCcc--
Q 006220          524 SSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA------SG---RCVTPLMGHTSC--  591 (656)
Q Consensus       524 s~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~------~~---~~~~~~~~h~~~--  591 (656)
                      +.|+.+..+|+.-+ ++.+.+.-|...+++++|++.-.++++|+.||.+.|+--.      ..   -+++.+.+|...  
T Consensus       626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~  705 (733)
T KOG0650|consen  626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND  705 (733)
T ss_pred             cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence            99999999999754 6677888899999999999999999999999999998532      22   355677788754  


Q ss_pred             --EEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          592 --VWTLAYSCEGSLLASGSADCTVKLW  616 (656)
Q Consensus       592 --V~~l~~s~~~~~l~sgs~Dg~I~iW  616 (656)
                        |..+.|+|...+|+++|+||+|++|
T Consensus       706 ~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  706 LGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cceEeecccCCCceEEecCCCceEEee
Confidence              8999999999999999999999998

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=5.7e-20  Score=177.02  Aligned_cols=238  Identities=18%  Similarity=0.324  Sum_probs=184.5

Q ss_pred             eecCccCEEEEEEccCCCEEEEEeCCCeEEEEecc----CCceeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEEEE
Q 006220          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK----LNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW  490 (656)
Q Consensus       417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~----~~~~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lw  490 (656)
                      -.+|..-|.++.|.+-|+.+++|+.|++|+|||.+    ++.+....+.|.+.|+.+.|-+  .|+.+|+++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            34788999999999999999999999999999964    3345667788999999999976  68999999999999999


Q ss_pred             ECCC---------CceeEEecCCCCCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCC------eeEEEEe-------cC
Q 006220          491 SMDR---------IQPLRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSG------ECVRIFI-------GH  546 (656)
Q Consensus       491 d~~~---------~~~~~~~~~~~~~V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~------~~~~~~~-------~h  546 (656)
                      .-..         -....++....+.|+.|.|.|  -|-.+|+++.||++|||+.-..      .....+.       .+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            7521         112345567778999999998  4678999999999999987543      2222232       46


Q ss_pred             CCCeEEEEEcCC---CCEEEEEECC-----CcEEEEeCCCC----eeeEeeeCCCccEEEEEEcCC----CCEEEEEECC
Q 006220          547 RSMILSLAMSPD---GRYMASGDED-----GTIMMWDLASG----RCVTPLMGHTSCVWTLAYSCE----GSLLASGSAD  610 (656)
Q Consensus       547 ~~~i~~l~~sp~---g~~L~s~~~d-----g~I~iwD~~~~----~~~~~~~~h~~~V~~l~~s~~----~~~l~sgs~D  610 (656)
                      ..+..|+.|+|.   ..+||.|+.+     +.+.||....+    ..+.++.+|+.+|++++|.|+    -.+||+++.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence            678899999984   4578888766     57999987543    355677799999999999995    3579999999


Q ss_pred             CcEEEEeCCCCCceeecccc-----cCCccccccccccCCCCCeEEEEEc
Q 006220          611 CTVKLWDVTTSTKVLKTEEK-----SGTNRLRSLKTLPTKSTPVYSLQVL  655 (656)
Q Consensus       611 g~I~iWd~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~pv~sv~Ft  655 (656)
                      | |+||.+.........++.     ...-.+..++.+..|+.+|+.|.|.
T Consensus       249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN  297 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN  297 (361)
T ss_pred             c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe
Confidence            9 999999863322211111     1123466788899999999999884

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.3e-20  Score=190.11  Aligned_cols=267  Identities=16%  Similarity=0.206  Sum_probs=209.8

Q ss_pred             HHHhccceecCCCCCCce-eEEEEeeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCc
Q 006220          325 LEDLRNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE  402 (656)
Q Consensus       325 ~~~~~~~v~l~~~~~ps~-~~~~~~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~  402 (656)
                      +.++.++++++...-..- ....++-...+|.|++|.|+|. .+++++.....+.||+.+....                
T Consensus       230 vaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~----------------  293 (514)
T KOG2055|consen  230 VAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT----------------  293 (514)
T ss_pred             EecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc----------------
Confidence            345555555543221111 1222333456899999999999 8899999999999999763221                


Q ss_pred             cccCCCCCceeeEEeecCc-cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE
Q 006220          403 DIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS  481 (656)
Q Consensus       403 ~~~~~~~~~~~~~~l~~h~-~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg  481 (656)
                                .+....++. ..+.....||++++|+..+..|.|.+....+++.+..++ -.+.|.+++|+.++..++++
T Consensus       294 ----------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~  362 (514)
T KOG2055|consen  294 ----------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLAS  362 (514)
T ss_pred             ----------cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEE
Confidence                      122222332 456678889999999999999999999999999998887 46689999999999999999


Q ss_pred             ECCCcEEEEECCCCceeEEecCCCCCe--eEEEEcCCCCEEEEEECCCcEEEEeCCC------CeeEEEEecCCCCeEEE
Q 006220          482 SHDRTARIWSMDRIQPLRIMAGHLSDV--DCVRWHINCNYIATGSSDKTVRLWDVSS------GECVRIFIGHRSMILSL  553 (656)
Q Consensus       482 s~Dg~i~lwd~~~~~~~~~~~~~~~~V--~~v~~~p~~~~l~tgs~dg~V~iwd~~~------~~~~~~~~~h~~~i~~l  553 (656)
                      +.+|.|.+||++...+++.+... +.|  ++++.++++.|||+||..|.|.|||..+      .+++..+..-...|++|
T Consensus       363 ~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl  441 (514)
T KOG2055|consen  363 GGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL  441 (514)
T ss_pred             cCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence            99999999999999999888743 333  5667779999999999999999999753      35566666667789999


Q ss_pred             EEcCCCCEEEEEE--CCCcEEEEeCCCCeeeEeeeCCC---ccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          554 AMSPDGRYMASGD--EDGTIMMWDLASGRCVTPLMGHT---SCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       554 ~~sp~g~~L~s~~--~dg~I~iwD~~~~~~~~~~~~h~---~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      .|+|+++.||.++  .+..+++-.+.+......+....   +.|+|++|||.|.+||.|..+|.|.+|.+.
T Consensus       442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  442 QFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            9999999988776  56789999998887776665332   679999999999999999999999999874

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=5.3e-20  Score=199.58  Aligned_cols=233  Identities=19%  Similarity=0.307  Sum_probs=191.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      +...|.|++-  ++.+|++|+.+++|.+|.+....                            .-..+...+-++.+++|
T Consensus        55 ~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~----------------------------~~~iL~Rftlp~r~~~v  104 (933)
T KOG1274|consen   55 SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE----------------------------EDTILARFTLPIRDLAV  104 (933)
T ss_pred             cCceeEEEee--cccceEEeeccceEEEeeCCCCC----------------------------ccceeeeeeccceEEEE
Confidence            5556666664  56699999999999999987521                            11233445678999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC-----
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH-----  504 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~-----  504 (656)
                      +.+|.+++.||.|-.|++-++.+......+++|..+|.++.|+|++.+||+.+.||.+++||+.++.....+.+-     
T Consensus       105 ~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~  184 (933)
T KOG1274|consen  105 SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE  184 (933)
T ss_pred             ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999988766655421     


Q ss_pred             ---CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec--CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          505 ---LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       505 ---~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                         ...+..++|||+|..++..+.|+.|.+|+..++.....+..  +...+.+++|+|+|.|||+++.||.|.|||..+.
T Consensus       185 ~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~  264 (933)
T KOG1274|consen  185 FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH  264 (933)
T ss_pred             ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence               34467789999999999999999999999999988776653  3445999999999999999999999999999872


Q ss_pred             eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW  616 (656)
Q Consensus       580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iW  616 (656)
                      ..    ......|.+++|.|+.+.+-.-..-|+..+|
T Consensus       265 ~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  265 ER----HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             hh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence            21    2234689999999998876655555554444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.86  E-value=8.5e-19  Score=181.02  Aligned_cols=231  Identities=12%  Similarity=0.094  Sum_probs=175.2

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEE-EEEeC
Q 006220          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSA  441 (656)
Q Consensus       363 g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L-~s~s~  441 (656)
                      ++++++++.|+.|++||+.+.                            .....+.+|. .+.+++|+|+++.+ ++++.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~----------------------------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~   51 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATL----------------------------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASD   51 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCC----------------------------ceEEEEECCC-CCCceEECCCCCEEEEEECC
Confidence            357889999999999998642                            1223344443 36789999999876 56778


Q ss_pred             CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE-ECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEE
Q 006220          442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI  520 (656)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l  520 (656)
                      ++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.+++||+.+.+.+..+..+ ..+.+++|+|++.++
T Consensus        52 ~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l  129 (300)
T TIGR03866        52 SDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIV  129 (300)
T ss_pred             CCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEE
Confidence            89999999998887776665443 4678999999877655 56899999999988777776532 457889999999999


Q ss_pred             EEEECCC-cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCeeeEeeeCCC-----c--c
Q 006220          521 ATGSSDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRCVTPLMGHT-----S--C  591 (656)
Q Consensus       521 ~tgs~dg-~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iwD~~~~~~~~~~~~h~-----~--~  591 (656)
                      ++++.++ .+.+||..++........ ...+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..+..+.     .  .
T Consensus       130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  208 (300)
T TIGR03866       130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ  208 (300)
T ss_pred             EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence            9988765 577889998887665443 3345789999999988654 468999999999998877665321     1  2


Q ss_pred             EEEEEEcCCCCEEEE-EECCCcEEEEeCCCCCcee
Q 006220          592 VWTLAYSCEGSLLAS-GSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       592 V~~l~~s~~~~~l~s-gs~Dg~I~iWd~~~~~~~~  625 (656)
                      ...++|+|++++++. .+.++.|.+||+.+.+...
T Consensus       209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~  243 (300)
T TIGR03866       209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD  243 (300)
T ss_pred             ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence            346889999998554 4557789999998776543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.86  E-value=3.7e-20  Score=186.80  Aligned_cols=255  Identities=20%  Similarity=0.244  Sum_probs=200.3

Q ss_pred             EeeCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          347 FINTHNGLNCASISQDG--SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg--~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      ..-+.+.|+|++|+|..  +++|+|...|.|-+||+....                        .....+..+..|+++|
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~------------------------~d~d~v~~f~~hs~~V  237 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE------------------------KDKDGVYLFTPHSGPV  237 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC------------------------CccCceEEeccCCccc
Confidence            34567889999999974  589999999999999996211                        1123456788999999


Q ss_pred             EEEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEeeC--CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce-eEE
Q 006220          425 YSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRI  500 (656)
Q Consensus       425 ~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~-~~~  500 (656)
                      .++.|+|.+ ..+++.|.||+|++-|++....-..+..  ....+.++.|+.+...++.+..=|...+||+++... ...
T Consensus       238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~  317 (498)
T KOG4328|consen  238 SGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN  317 (498)
T ss_pred             cceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh
Confidence            999999966 4799999999999999987654333333  455677888998888888898888999999998665 566


Q ss_pred             ecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCe----eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          501 MAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (656)
Q Consensus       501 ~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~----~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD  575 (656)
                      +.-|...|+.++++|- ..+|+|++.|++++|||++.-.    +.-....|...|.+..|||.|..|++.+.|..|+|||
T Consensus       318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence            6778889999999995 4678999999999999998532    2233456999999999999988899999999999999


Q ss_pred             CC----CCeeeEeeeCCCc------cEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220          576 LA----SGRCVTPLMGHTS------CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       576 ~~----~~~~~~~~~~h~~------~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                      ..    ...+...+. |..      ......|.|+..++++|-.-..|-|+|-..++.+..
T Consensus       398 ss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e  457 (498)
T KOG4328|consen  398 SSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE  457 (498)
T ss_pred             cccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence            83    222333332 221      234567999999999999999999999888775544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.85  E-value=2.5e-19  Score=182.39  Aligned_cols=311  Identities=21%  Similarity=0.264  Sum_probs=219.2

Q ss_pred             HHhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc--cccc-------CCCCC
Q 006220          326 EDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQA--VSSG-------LQGEN  396 (656)
Q Consensus       326 ~~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~--~~~~-------~~~~~  396 (656)
                      .+....+.+|+.....+....+ .|.++|.|++.-.+|.+|- |+.|..|..||-.-.+...  ....       .++..
T Consensus       263 gDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~  340 (626)
T KOG2106|consen  263 GDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG  340 (626)
T ss_pred             ecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCC
Confidence            3556677888775555544444 8999999999999998777 9999999999932111100  0000       00000


Q ss_pred             CC---CCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec
Q 006220          397 DT---TPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP  473 (656)
Q Consensus       397 ~~---~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp  473 (656)
                      +.   .....++..+-.........+|......++.+|+...+++|+.|+++++|+  ..+.... +....++.|+.|+|
T Consensus       341 di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt-~~~~d~~~~~~fhp  417 (626)
T KOG2106|consen  341 DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT-KIIEDPAECADFHP  417 (626)
T ss_pred             cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE-EEecCceeEeeccC
Confidence            00   001111111222223345678999999999999999999999999999999  2333333 33567899999999


Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeE-EEEecCCCCeE
Q 006220          474 QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECV-RIFIGHRSMIL  551 (656)
Q Consensus       474 ~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~-~~~~~h~~~i~  551 (656)
                      .| .++.|+..|...+.|+++...+..-.. ..++++++|+|+|.+||.|+.|+.|++|-+..+ ... +.-..+.++|+
T Consensus       418 sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~it  495 (626)
T KOG2106|consen  418 SG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPIT  495 (626)
T ss_pred             cc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeE
Confidence            99 999999999999999999766666555 789999999999999999999999999998654 322 22233448999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEe--------------e----eCCCccEEEEEEcCCCCEEEEEECCCcE
Q 006220          552 SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP--------------L----MGHTSCVWTLAYSCEGSLLASGSADCTV  613 (656)
Q Consensus       552 ~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~--------------~----~~h~~~V~~l~~s~~~~~l~sgs~Dg~I  613 (656)
                      .+.||+|+++|.+.+.|-.|..|.-...+.+..              +    ..|...|..++-+.+.+++++|...|.|
T Consensus       496 hLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v  575 (626)
T KOG2106|consen  496 HLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKV  575 (626)
T ss_pred             EeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceE
Confidence            999999999999999999999995432221111              1    1234456666777788899999999999


Q ss_pred             EEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEc
Q 006220          614 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVL  655 (656)
Q Consensus       614 ~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ft  655 (656)
                      ++|...-......            .-.+-.+++-|.+|+|+
T Consensus       576 ~lf~yPc~s~rA~------------~he~~ghs~~vt~V~Fl  605 (626)
T KOG2106|consen  576 HLFSYPCSSPRAP------------SHEYGGHSSHVTNVAFL  605 (626)
T ss_pred             EEEccccCCCccc------------ceeeccccceeEEEEEe
Confidence            9998765443221            11244556666666664

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.85  E-value=1.5e-19  Score=190.42  Aligned_cols=293  Identities=26%  Similarity=0.394  Sum_probs=215.5

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCCccccc----------------
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGS---LVAGGFSDSSLKVWDMAKLGQQAVS----------------  389 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~---~La~g~~dg~I~Iwdl~~~~~~~~~----------------  389 (656)
                      ...+.++++.-+ ...+++.+|...|+|+.|-|+..   ++++|+.||.|.+|.+.........                
T Consensus        33 ~~~Iav~dp~k~-~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~  111 (764)
T KOG1063|consen   33 GPAIAVADPEKI-LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARS  111 (764)
T ss_pred             CceEEEeCcccc-eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeee
Confidence            345555554333 45667889999999999999877   8999999999999998732110000                


Q ss_pred             ----c----------cCCCCCC----C---------------CCCc--------------cccC-CCCCceeeEEeecCc
Q 006220          390 ----S----------GLQGEND----T---------------TPRE--------------DIIG-PNGRKRSYTLYQGHS  421 (656)
Q Consensus       390 ----~----------~~~~~~~----~---------------~~~~--------------~~~~-~~~~~~~~~~l~~h~  421 (656)
                          .          ..+..+.    .               ..+.              .+.+ ..........+.||.
T Consensus       112 ~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~  191 (764)
T KOG1063|consen  112 SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHT  191 (764)
T ss_pred             eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccc
Confidence                0          0000000    0               0000              0000 012234556788999


Q ss_pred             cCEEEEEEccCCC---EEEEEeCCCeEEEEeccCCc---------------------eeE----------EeeCCCccEE
Q 006220          422 GPVYSASFSPLGD---FILSSSADTTIRLWSTKLNA---------------------NLV----------CYKGHNYPVW  467 (656)
Q Consensus       422 ~~V~~l~~spd~~---~L~s~s~Dg~I~lwd~~~~~---------------------~~~----------~~~~h~~~V~  467 (656)
                      +.|.+++|...+.   +|+|+|.|..||||.+.-+.                     ...          .+.||..-|.
T Consensus       192 DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~  271 (764)
T KOG1063|consen  192 DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVY  271 (764)
T ss_pred             hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceE
Confidence            9999999987654   78999999999999865332                     111          1248999999


Q ss_pred             EEEEecCCCEEEEEECCCcEEEEECCCCc---------------------------------------------------
Q 006220          468 DVQFNPQGHYFASSSHDRTARIWSMDRIQ---------------------------------------------------  496 (656)
Q Consensus       468 ~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~---------------------------------------------------  496 (656)
                      ++.|+|.+..|+++|.|.++.+|..+...                                                   
T Consensus       272 sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w  351 (764)
T KOG1063|consen  272 SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFW  351 (764)
T ss_pred             EEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccce
Confidence            99999999999999999999999754221                                                   


Q ss_pred             -eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-------------------------C----------CeeE
Q 006220          497 -PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-------------------------S----------GECV  540 (656)
Q Consensus       497 -~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~-------------------------~----------~~~~  540 (656)
                       +...+.||...|..++|+|.|.+|++.+.|.+-|++-.-                         +          .+.+
T Consensus       352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVl  431 (764)
T KOG1063|consen  352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVL  431 (764)
T ss_pred             eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceee
Confidence             112345899999999999999999999999998886321                         0          0111


Q ss_pred             EEE-----------------------------------------------------------------------------
Q 006220          541 RIF-----------------------------------------------------------------------------  543 (656)
Q Consensus       541 ~~~-----------------------------------------------------------------------------  543 (656)
                      |.|                                                                             
T Consensus       432 RvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~  511 (764)
T KOG1063|consen  432 RVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQ  511 (764)
T ss_pred             eeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHH
Confidence            111                                                                             


Q ss_pred             ----------ecCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEE
Q 006220          544 ----------IGHRSMILSLAMSPDGRYMASGDED-----GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS  608 (656)
Q Consensus       544 ----------~~h~~~i~~l~~sp~g~~L~s~~~d-----g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs  608 (656)
                                -||...|.+++.+|+|+++|+++..     -.|++|+..+...+..+.+|+-.|+.++|||||++|++.|
T Consensus       512 ~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs  591 (764)
T KOG1063|consen  512 NTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS  591 (764)
T ss_pred             hccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEee
Confidence                      1788899999999999999998754     3599999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCC
Q 006220          609 ADCTVKLWDVTTST  622 (656)
Q Consensus       609 ~Dg~I~iWd~~~~~  622 (656)
                      .|.++.+|......
T Consensus       592 RDRt~sl~~~~~~~  605 (764)
T KOG1063|consen  592 RDRTVSLYEVQEDI  605 (764)
T ss_pred             cCceEEeeeeeccc
Confidence            99999999985543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=7.3e-21  Score=196.51  Aligned_cols=260  Identities=22%  Similarity=0.321  Sum_probs=203.3

Q ss_pred             EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      +++..|.+.|+.++|.+-...|++|+.||.|++|+++....                    ........+..+.+|.+||
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~--------------------s~~~~~epi~tfraH~gPV  347 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK--------------------SAEKDVEPILTFRAHEGPV  347 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC--------------------ccccceeeeEEEecccCce
Confidence            37888999999999999999999999999999999953110                    0112345778899999999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCC----------ceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLN----------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~----------~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~  494 (656)
                      .|++.++.+..+++|+.||+|+.|++...          ....++.||...||.+++|+....|++|+.||++++|+...
T Consensus       348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~  427 (577)
T KOG0642|consen  348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE  427 (577)
T ss_pred             EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCC
Confidence            99999999999999999999999965411          22356789999999999999999999999999999999887


Q ss_pred             CceeEEecCC--CCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEEecC-------CCCeEEEEEcCCCCEEEE
Q 006220          495 IQPLRIMAGH--LSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGH-------RSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       495 ~~~~~~~~~~--~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-------~~~i~~l~~sp~g~~L~s  564 (656)
                      ..+ ..+...  .+...++.+-... ...++...-+.-.+++...+..+..+...       ...+..+.++|.+.+.++
T Consensus       428 ~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~  506 (577)
T KOG0642|consen  428 ESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT  506 (577)
T ss_pred             cCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe
Confidence            766 333321  1233444443222 22233333344445555555555544321       134677889999999999


Q ss_pred             EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      +..|+.|+++|..++..+..+..|...++++++.|+|-+|++|+.||.+++|.+.......
T Consensus       507 ~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  507 AHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             cccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence            9999999999999999999999999999999999999999999999999999997766544

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=4.1e-20  Score=193.03  Aligned_cols=254  Identities=21%  Similarity=0.330  Sum_probs=192.3

Q ss_pred             EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      ++.+..|.+.|..+.|-|....|++++.|.++++||+.....                          .-...+.||.+.
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l--------------------------~G~~~~~GH~~S  146 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL--------------------------VGGRLNLGHTGS  146 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee--------------------------ecceeecccccc
Confidence            456788999999999999778899999999999999986221                          122357899999


Q ss_pred             EEEEEEccCCC-EEEEEeCCCeEEEEeccCCce---------------------------eEEeeCCCccEEE---EEEe
Q 006220          424 VYSASFSPLGD-FILSSSADTTIRLWSTKLNAN---------------------------LVCYKGHNYPVWD---VQFN  472 (656)
Q Consensus       424 V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~---------------------------~~~~~~h~~~V~~---l~~s  472 (656)
                      |.+++|.|++. .|++|+.||.|.|||++-...                           +...+.+...|.+   +.+.
T Consensus       147 vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f  226 (720)
T KOG0321|consen  147 VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF  226 (720)
T ss_pred             cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE
Confidence            99999999776 678999999999999863320                           1111223444555   6666


Q ss_pred             cCCCEEEEEEC-CCcEEEEECCCCceeE------E--ecCC---CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--e
Q 006220          473 PQGHYFASSSH-DRTARIWSMDRIQPLR------I--MAGH---LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--E  538 (656)
Q Consensus       473 p~~~~l~sgs~-Dg~i~lwd~~~~~~~~------~--~~~~---~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~--~  538 (656)
                      .|...||++|. |+.|++||++..+...      .  +..|   .-.+.++.....|.+|++.+.|+.|++|++.+-  .
T Consensus       227 kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s  306 (720)
T KOG0321|consen  227 KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS  306 (720)
T ss_pred             eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence            78899999987 9999999998654322      1  2222   234677888888999999999999999999864  3


Q ss_pred             eEEEEecCCCC--eEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-eeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEE
Q 006220          539 CVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVK  614 (656)
Q Consensus       539 ~~~~~~~h~~~--i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~-~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~  614 (656)
                      ++..+.++...  -..-..+|++.+|++|+.|...++|.+.+.. ....+.+|.-.|++++|.|. -.-+++++.|..++
T Consensus       307 P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~k  386 (720)
T KOG0321|consen  307 PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVK  386 (720)
T ss_pred             chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceE
Confidence            44445444321  1223468999999999999999999998754 45566799999999999883 33477779999999


Q ss_pred             EEeCCCCCc
Q 006220          615 LWDVTTSTK  623 (656)
Q Consensus       615 iWd~~~~~~  623 (656)
                      ||++..+-.
T Consensus       387 iW~l~~~l~  395 (720)
T KOG0321|consen  387 IWRLSNGLE  395 (720)
T ss_pred             EEeccCchh
Confidence            999966543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=1.1e-17  Score=178.44  Aligned_cols=254  Identities=36%  Similarity=0.654  Sum_probs=212.0

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc-cCE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPV  424 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V  424 (656)
                      ....+...+.++.|.+.+..++.++.|+.+.+|+.....                           .....+.++. ..+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~  112 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---------------------------KLIKSLEGLHDSSV  112 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---------------------------eeEEEEeccCCCce
Confidence            356778899999999999999999999999999987521                           1233333433 367


Q ss_pred             EEEEE-ccCCC-EEEEEeC-CCeEEEEeccC-CceeEEeeCCCccEEEEEEecCCCEEEEEEC-CCcEEEEECCCCceeE
Q 006220          425 YSASF-SPLGD-FILSSSA-DTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLR  499 (656)
Q Consensus       425 ~~l~~-spd~~-~L~s~s~-Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~lwd~~~~~~~~  499 (656)
                      ..+.+ ++++. .++.++. |+.+.+|+... ......+..|...|.+++|+|++.++++++. |+.+++|+......+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (466)
T COG2319         113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS  192 (466)
T ss_pred             eeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence            77777 77777 5555455 99999999998 7778888999999999999999998888886 9999999999988999


Q ss_pred             EecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCeeEE-EEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          500 IMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~~~~~~-~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~  577 (656)
                      .+.+|...|.+++|+|++. .+++++.|+.|++||...+.... .+.+|.... ...|+|++.++++++.|+.+++||+.
T Consensus       193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence            9999999999999999998 55555899999999999888888 688888875 44899999999999999999999998


Q ss_pred             CCee-eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          578 SGRC-VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       578 ~~~~-~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      .... +..+.+|...|.++.|+|++..+++++.|+.+.+|++.........
T Consensus       272 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  322 (466)
T COG2319         272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL  322 (466)
T ss_pred             CCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence            7665 4444688899999999998889998999999999988877654433

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=1.4e-19  Score=189.10  Aligned_cols=268  Identities=20%  Similarity=0.308  Sum_probs=195.5

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeC
Q 006220          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA  441 (656)
Q Consensus       362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~  441 (656)
                      ....||.+..||.|.++|.......                      .....+.....|.+.|..+.|-|....|++++.
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr----------------------~ee~~lk~~~aH~nAifDl~wapge~~lVsasG  120 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFR----------------------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASG  120 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcc----------------------hhhhhhcccccccceeEeeccCCCceeEEEccC
Confidence            3567999999999999998642111                      112345667789999999999996678999999


Q ss_pred             CCeEEEEeccCCceeEE--eeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCc--------------------e-
Q 006220          442 DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ--------------------P-  497 (656)
Q Consensus       442 Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~--------------------~-  497 (656)
                      |.++++||+.+.+++..  +.+|.+.|.+++|.| +...|++|+.||.+.|||++-..                    + 
T Consensus       121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps  200 (720)
T KOG0321|consen  121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS  200 (720)
T ss_pred             CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence            99999999999888766  889999999999999 45679999999999999986321                    1 


Q ss_pred             ------eEEecCCCCCeeE---EEEcCCCCEEEEEEC-CCcEEEEeCCCCeeEE--------EEecC---CCCeEEEEEc
Q 006220          498 ------LRIMAGHLSDVDC---VRWHINCNYIATGSS-DKTVRLWDVSSGECVR--------IFIGH---RSMILSLAMS  556 (656)
Q Consensus       498 ------~~~~~~~~~~V~~---v~~~p~~~~l~tgs~-dg~V~iwd~~~~~~~~--------~~~~h---~~~i~~l~~s  556 (656)
                            ++....+...|.+   +.+..|...||+++. |+.|++||++......        .+..|   ...++++...
T Consensus       201 kp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD  280 (720)
T KOG0321|consen  201 KPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD  280 (720)
T ss_pred             chhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence                  1111123333444   444567788888777 9999999998754432        12223   3357788888


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCC--eeeEeeeCCCc-cE-EEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccC
Q 006220          557 PDGRYMASGDEDGTIMMWDLASG--RCVTPLMGHTS-CV-WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG  632 (656)
Q Consensus       557 p~g~~L~s~~~dg~I~iwD~~~~--~~~~~~~~h~~-~V-~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~  632 (656)
                      ..|.+|++.+.|+.|++|++.+.  .++..+.++.. .+ ..-..+|++.++++|+.|...++|.+.+........ ...
T Consensus       281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-~Gh  359 (720)
T KOG0321|consen  281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-LGH  359 (720)
T ss_pred             CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-hCc
Confidence            88999988888999999999764  23444444431 11 122358999999999999999999998876533221 133


Q ss_pred             CccccccccccCCCCCeEEE
Q 006220          633 TNRLRSLKTLPTKSTPVYSL  652 (656)
Q Consensus       633 ~~~~~~l~~~p~~~~pv~sv  652 (656)
                      ...+..+.+.|...+||..+
T Consensus       360 t~eVt~V~w~pS~~t~v~Tc  379 (720)
T KOG0321|consen  360 TREVTTVRWLPSATTPVATC  379 (720)
T ss_pred             ceEEEEEeeccccCCCceee
Confidence            34556777888888888654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=8.1e-19  Score=174.90  Aligned_cols=256  Identities=20%  Similarity=0.355  Sum_probs=192.8

Q ss_pred             CCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220          350 THNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  428 (656)
                      .+.+|.++.|.+++. .+|+|+.|..|+||.+.......                   ..........+..|...|+++.
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-------------------~~~~V~y~s~Ls~H~~aVN~vR   72 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-------------------GDMKVEYLSSLSRHTRAVNVVR   72 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCC-------------------CceeEEEeecccCCcceeEEEE
Confidence            456899999998866 99999999999999987521110                   0012345667889999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEecc--------C--------CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220          429 FSPLGDFILSSSADTTIRLWSTK--------L--------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (656)
Q Consensus       429 ~spd~~~L~s~s~Dg~I~lwd~~--------~--------~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~  492 (656)
                      |+|+|..|+||+.+|.|.+|-..        +        +.......+|...|..++|+|++.++++++-|.++++||+
T Consensus        73 f~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv  152 (434)
T KOG1009|consen   73 FSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV  152 (434)
T ss_pred             EcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence            99999999999999999999765        2        2334566789999999999999999999999999999999


Q ss_pred             CCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEE---------------------EEecC--CCC
Q 006220          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR---------------------IFIGH--RSM  549 (656)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~---------------------~~~~h--~~~  549 (656)
                      ..++....+.+|...|..++|.|-++|+++-+.|...+.+++...+.+.                     .|...  ..-
T Consensus       153 ~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF  232 (434)
T KOG1009|consen  153 HAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF  232 (434)
T ss_pred             ccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence            9999999999999999999999999999999888877777664322211                     11100  001


Q ss_pred             eEEEEEcCCCCEEEEEE---------------------------------------------------------------
Q 006220          550 ILSLAMSPDGRYMASGD---------------------------------------------------------------  566 (656)
Q Consensus       550 i~~l~~sp~g~~L~s~~---------------------------------------------------------------  566 (656)
                      ...++|+|+|.+|++..                                                               
T Consensus       233 FrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr  312 (434)
T KOG1009|consen  233 FRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR  312 (434)
T ss_pred             hhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence            22344555554444321                                                               


Q ss_pred             ------CCCcEEEEeCCCCeeeEeee-CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          567 ------EDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       567 ------~dg~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                            ..+.|.|||..+..++.... -|-..|+.++|+++|..|+..+.||.+.+--+...+..
T Consensus       313 lvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  313 LVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             eEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence                  12345566655555544443 36678999999999999999999999888777665543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=1e-19  Score=184.58  Aligned_cols=241  Identities=16%  Similarity=0.294  Sum_probs=194.8

Q ss_pred             ceecCC--CCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          331 RVHLSS--AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       331 ~v~l~~--~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      .+.+|.  ..+|.++........ .-.|++......|+++|+..++|+|||+..                          
T Consensus        58 ~~~~~~K~g~~~~Vp~~~k~~gd-~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~--------------------------  110 (673)
T KOG4378|consen   58 VMRIKEKDGKTPEVPRVRKLTGD-NAFCVACASQSLYEISGGQSGCVKIWDLRA--------------------------  110 (673)
T ss_pred             eEEEecccCCCCccceeeccccc-hHHHHhhhhcceeeeccCcCceeeehhhHH--------------------------
Confidence            444553  234555544433333 344554444458999999999999999974                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC-CccEEEEEEecCCC-EEEEEECCCc
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGH-YFASSSHDRT  486 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~-~l~sgs~Dg~  486 (656)
                        ....+.+.+|...|+++.++....+|++++..|.|.|..+.++.....+... ...|.-+.|+|..+ +|.+++.+|.
T Consensus       111 --kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~  188 (673)
T KOG4378|consen  111 --KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA  188 (673)
T ss_pred             --HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCe
Confidence              3456778899999999999999999999999999999999998877777654 44566899999665 4677889999


Q ss_pred             EEEEECCCCceeEEec-CCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220          487 ARIWSMDRIQPLRIMA-GHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       487 i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s  564 (656)
                      |.+||+....++..+. .|..+...|+|+|. ...|++.+.|..|.+||++.......+. ...|.+.++|+++|.+|++
T Consensus       189 VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~a  267 (673)
T KOG4378|consen  189 VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCA  267 (673)
T ss_pred             EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEe
Confidence            9999999888876554 79999999999994 5677889999999999999877776665 4578999999999999999


Q ss_pred             EECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCCC
Q 006220          565 GDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEG  601 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~~  601 (656)
                      |...|.|..||++.. .++..+..|...|++++|-+..
T Consensus       268 G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  268 GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            999999999999864 5778888999999999997654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=6.9e-19  Score=174.55  Aligned_cols=209  Identities=24%  Similarity=0.387  Sum_probs=170.9

Q ss_pred             eeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCC-------ceeEEeeCCCccEEEEEEecC-CCEEEEEEC
Q 006220          413 SYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQ-GHYFASSSH  483 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~-~~~l~sgs~  483 (656)
                      .+-...||+++|..++|+|.+. .++|||.|.+|.||.+..+       +.+..+.+|...|-.++|+|. .+.|++++.
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~  152 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS  152 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence            3445679999999999999654 6889999999999998643       346788999999999999995 567899999


Q ss_pred             CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC-CeEEEEEcCCCCEE
Q 006220          484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYM  562 (656)
Q Consensus       484 Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~-~i~~l~~sp~g~~L  562 (656)
                      |.+|.+|++.+++.+..+. |..-|.++.|+.+|.+|+|++.|+.|||||.++++.+..-.+|.+ .-..+.|-.+|..+
T Consensus       153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence            9999999999999888887 999999999999999999999999999999999999998888876 34556788888866


Q ss_pred             EEEE---CCCcEEEEeCCCCee---eEeeeCCCccEEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCCc
Q 006220          563 ASGD---EDGTIMMWDLASGRC---VTPLMGHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTK  623 (656)
Q Consensus       563 ~s~~---~dg~I~iwD~~~~~~---~~~~~~h~~~V~~l~~s~~~~~l~sg-s~Dg~I~iWd~~~~~~  623 (656)
                      .+|.   ++..+-+||-.....   +..+. .++.|.---|.+|.+++..+ -.|+.||.|.+.+...
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            5553   578899999765432   22332 23455555578888877555 4899999999988764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=2.6e-19  Score=173.84  Aligned_cols=241  Identities=27%  Similarity=0.462  Sum_probs=189.5

Q ss_pred             eCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          349 NTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       349 ~~~~~V~~l~fs~d----g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      .+......++|+-|    ..++|+|+.-|.|+|.|+..                            ......+.+|.+.|
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~----------------------------~~~~~~~~ghG~sI  138 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS----------------------------GQCSKNYRGHGGSI  138 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch----------------------------hhhccceeccCccc
Confidence            45667788888754    45899999999999999875                            34556688999999


Q ss_pred             EEEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEe---eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc----
Q 006220          425 YSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----  496 (656)
Q Consensus       425 ~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~----  496 (656)
                      ..+.+.|+. +++++||.|.+||+|++++..++..+   .+|...|.++.|+++|.+|++||.|.++++|++...+    
T Consensus       139 Neik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~  218 (385)
T KOG1034|consen  139 NEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK  218 (385)
T ss_pred             hhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence            999999976 58899999999999999999998876   4699999999999999999999999999999987321    


Q ss_pred             -----------------------eeE-EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC-CCCe-------------
Q 006220          497 -----------------------PLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV-SSGE-------------  538 (656)
Q Consensus       497 -----------------------~~~-~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~-~~~~-------------  538 (656)
                                             +.. +-.-|...|.|+.|-  |+++++-|.++.|..|.. +-++             
T Consensus       219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~T  296 (385)
T KOG1034|consen  219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATT  296 (385)
T ss_pred             hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCcccee
Confidence                                   000 122477778888885  578999888999999987 2111             


Q ss_pred             eEEEEecCCCCeEEEE--EcCCCCEEEEEECCCcEEEEeCCCCeee--EeeeCC--CccEEEEEEcCCCCEEEEEECCCc
Q 006220          539 CVRIFIGHRSMILSLA--MSPDGRYMASGDEDGTIMMWDLASGRCV--TPLMGH--TSCVWTLAYSCEGSLLASGSADCT  612 (656)
Q Consensus       539 ~~~~~~~h~~~i~~l~--~sp~g~~L~s~~~dg~I~iwD~~~~~~~--~~~~~h--~~~V~~l~~s~~~~~l~sgs~Dg~  612 (656)
                      .+..+.-....|.-|.  |.|.+++||.|...|.|.+||++...+.  .++..+  ...|...+||.|+.+|+..+.|++
T Consensus       297 i~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~  376 (385)
T KOG1034|consen  297 ILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGT  376 (385)
T ss_pred             eeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence            1233333344455554  5567899999999999999999877653  222222  367999999999999999999999


Q ss_pred             EEEEeCC
Q 006220          613 VKLWDVT  619 (656)
Q Consensus       613 I~iWd~~  619 (656)
                      |.-||..
T Consensus       377 Vwrwdrv  383 (385)
T KOG1034|consen  377 VWRWDRV  383 (385)
T ss_pred             EEEEEee
Confidence            9999864

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=6.5e-19  Score=177.41  Aligned_cols=200  Identities=23%  Similarity=0.378  Sum_probs=163.8

Q ss_pred             EEEEEEcc-------CCCEEEEEeCCCeEEEEeccCCcee---------------------EEeeCCCccEEEEEEecC-
Q 006220          424 VYSASFSP-------LGDFILSSSADTTIRLWSTKLNANL---------------------VCYKGHNYPVWDVQFNPQ-  474 (656)
Q Consensus       424 V~~l~~sp-------d~~~L~s~s~Dg~I~lwd~~~~~~~---------------------~~~~~h~~~V~~l~~sp~-  474 (656)
                      -.|+.|..       .|++++.|+.|..|.|||+.-...+                     ....+|+..|..+.|+.. 
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            35666643       3579999999999999998622110                     112368888889999874 


Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEE
Q 006220          475 GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL  553 (656)
Q Consensus       475 ~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l  553 (656)
                      .+.||+||.|.+|++||+.+++|..++..|...|.++.||| ...+|++|+.|++|.+.|+|...+....-.-.+.|-.+
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv  335 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV  335 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence            56789999999999999999999999999999999999998 56789999999999999999533322222245779999


Q ss_pred             EEcCCC-CEEEEEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCc
Q 006220          554 AMSPDG-RYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       554 ~~sp~g-~~L~s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      +|.|.. ..+++++.||+|+-+|++.. +++.+++.|.++|.++++++. -.++++++.|+.|++|++.....
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence            999965 46778889999999999875 899999999999999999885 45789999999999999976554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=7e-20  Score=203.35  Aligned_cols=207  Identities=22%  Similarity=0.365  Sum_probs=167.2

Q ss_pred             ccCEEEEEEccCCCE----EEEEeCCCeEEEEeccCC------ceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEE
Q 006220          421 SGPVYSASFSPLGDF----ILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARI  489 (656)
Q Consensus       421 ~~~V~~l~~spd~~~----L~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~l  489 (656)
                      ....+.++|.+.+..    ++.|..||.|.+||...-      ..+..+..|.++|..+.|++.. +.+|+|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            356788999987765    888999999999997642      2356677899999999999965 59999999999999


Q ss_pred             EECCCCceeEEec--CCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC--CeEEEEEcCCCC-EEE
Q 006220          490 WSMDRIQPLRIMA--GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS--MILSLAMSPDGR-YMA  563 (656)
Q Consensus       490 wd~~~~~~~~~~~--~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~--~i~~l~~sp~g~-~L~  563 (656)
                      ||+.+.+.-....  ...+.|.|++|+. ....|++++.+|.+.|||++..+.+-.+..+.+  .+..++|+|++. .|+
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence            9998755443332  2457899999996 456778899999999999999988877766654  478899999863 555


Q ss_pred             EEECCC---cEEEEeCCCC-eeeEeeeCCCccEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCCceeec
Q 006220          564 SGDEDG---TIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       564 s~~~dg---~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      +++.|.   .|.+||++.. .+++.+.+|...|.++.|++.+ .+|+|++.|+.|.+|+..+++.+...
T Consensus       224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~  292 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL  292 (1049)
T ss_pred             eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence            555443   6999998754 5677788999999999999965 89999999999999999998765544

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.81  E-value=8.8e-17  Score=171.59  Aligned_cols=266  Identities=36%  Similarity=0.649  Sum_probs=213.8

Q ss_pred             ccceecCCCCCCceeEEEEeeCC-CCeEEEEE-cCCCC-EEEEEeC-CCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220          329 RNRVHLSSAALPSVSFYTFINTH-NGLNCASI-SQDGS-LVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~-~~V~~l~f-s~dg~-~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (656)
                      ...+.+|....+......+.... ..+..+.+ ++++. +++..+. |+.+.+|+...                      
T Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----------------------  143 (466)
T COG2319          86 DGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST----------------------  143 (466)
T ss_pred             CCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC----------------------
Confidence            34566666555542333444433 36777777 88887 5555444 99999999863                      


Q ss_pred             cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeC-CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEE
Q 006220          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSS  482 (656)
Q Consensus       405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs  482 (656)
                           .......+..|...|.+++|+|++..+++++. |+.+++|++..+..+..+.+|...|.+++|+|++. .+++++
T Consensus       144 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  218 (466)
T COG2319         144 -----PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS  218 (466)
T ss_pred             -----CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence                 12355677889999999999999998888886 99999999998888888999999999999999998 566669


Q ss_pred             CCCcEEEEECCCCceeE-EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EEEEecCCCCeEEEEEcCCCC
Q 006220          483 HDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR  560 (656)
Q Consensus       483 ~Dg~i~lwd~~~~~~~~-~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~~~~~h~~~i~~l~~sp~g~  560 (656)
                      .|+.+++||...+.... .+.+|...+ ...|+|++.++++++.|+.+++||++.... +..+.+|...+.++.|+|++.
T Consensus       219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  297 (466)
T COG2319         219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK  297 (466)
T ss_pred             CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence            99999999988777777 688888776 448999999999999999999999987665 555568889999999999888


Q ss_pred             EEEEEECCCcEEEEeCCCCeeeEeee--CCCccEEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCC
Q 006220          561 YMASGDEDGTIMMWDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTST  622 (656)
Q Consensus       561 ~L~s~~~dg~I~iwD~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~sg-s~Dg~I~iWd~~~~~  622 (656)
                      .+++++.|+.+.+||..+........  .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus       298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            88889999999999999888777766  788889999994332455555 688999999998876

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=1.9e-18  Score=165.04  Aligned_cols=254  Identities=20%  Similarity=0.301  Sum_probs=192.4

Q ss_pred             EEeeCCCCeEEEEEcC-CCCEEEEEeCC-------CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220          346 TFINTHNGLNCASISQ-DGSLVAGGFSD-------SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~-dg~~La~g~~d-------g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  417 (656)
                      .|..+.+.|+.++-+| |.++|+++..+       -.+.||.+.........                   .....+..+
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-------------------~tlE~v~~L  118 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-------------------STLECVASL  118 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc-------------------chhhHhhcC
Confidence            5677888999999998 46677777552       24789998752211100                   011122222


Q ss_pred             e-cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce-eEEee-----CCCccEEEEEEec--CCCEEEEEECCCcEE
Q 006220          418 Q-GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-LVCYK-----GHNYPVWDVQFNP--QGHYFASSSHDRTAR  488 (656)
Q Consensus       418 ~-~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~-~~~~~-----~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~  488 (656)
                      . .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+.     ++....++-+|+|  +|+.+++. .|+++.
T Consensus       119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~  196 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ  196 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence            2 4567999999999999988876 77899999987766 22222     2556678889999  67777776 579999


Q ss_pred             EEECCCCceeEEec-CCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCC-CCEEEE
Q 006220          489 IWSMDRIQPLRIMA-GHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPD-GRYMAS  564 (656)
Q Consensus       489 lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~-g~~L~s  564 (656)
                      .||+++.+....+. .|...|..+.|+|+-+ +|++|+.||.|++||.+. ..++..+.+|...|.++.|+|. .++|++
T Consensus       197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs  276 (370)
T KOG1007|consen  197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS  276 (370)
T ss_pred             EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence            99999887766655 7888899999999876 567899999999999985 5678899999999999999995 568889


Q ss_pred             EECCCcEEEEeCCCC-----------------------------eeeEeeeCCCccEEEEEEcC-CCCEEEEEECCCcEE
Q 006220          565 GDEDGTIMMWDLASG-----------------------------RCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVK  614 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~-----------------------------~~~~~~~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~  614 (656)
                      |+.|..|.+|-..+-                             ..+.++..|...|++++||. |.-++|+-+.||.+.
T Consensus       277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence            999999999965321                             13345667999999999987 555788899999998


Q ss_pred             EEeCCC
Q 006220          615 LWDVTT  620 (656)
Q Consensus       615 iWd~~~  620 (656)
                      |=.+..
T Consensus       357 Is~V~r  362 (370)
T KOG1007|consen  357 ISSVPR  362 (370)
T ss_pred             eecCCh
Confidence            876644

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=8.2e-18  Score=177.34  Aligned_cols=264  Identities=19%  Similarity=0.248  Sum_probs=206.6

Q ss_pred             HHHhccceecCCCCCCceeEEEEeeC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcc
Q 006220          325 LEDLRNRVHLSSAALPSVSFYTFINT-HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED  403 (656)
Q Consensus       325 ~~~~~~~v~l~~~~~ps~~~~~~~~~-~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~  403 (656)
                      +......+.+|+....-.+...++++ .+.|.+++|++.++ |.+.+-+|.|.-||+.+.                    
T Consensus        42 vsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~l--------------------  100 (691)
T KOG2048|consen   42 VSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTL--------------------  100 (691)
T ss_pred             eeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe-EEeecCCceEEEEecccC--------------------
Confidence            33445567788766544444455554 45699999996555 555558999999999863                    


Q ss_pred             ccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEE
Q 006220          404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASS  481 (656)
Q Consensus       404 ~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sg  481 (656)
                              ..........++|++++.+|.+..++.|+.||.+..++...+....  .+....+.|.+++|+|++..+++|
T Consensus       101 --------k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~G  172 (691)
T KOG2048|consen  101 --------KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGG  172 (691)
T ss_pred             --------ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEec
Confidence                    2334455567899999999999999999999977777776554432  233356899999999999999999


Q ss_pred             ECCCcEEEEECCCCceeEEecC--------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEE
Q 006220          482 SHDRTARIWSMDRIQPLRIMAG--------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL  553 (656)
Q Consensus       482 s~Dg~i~lwd~~~~~~~~~~~~--------~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l  553 (656)
                      +.||.|++||...+..+.....        ...-|.++.|- ....|++|.+-|+|.+||...|..+..+..|.+.|.|+
T Consensus       173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~L  251 (691)
T KOG2048|consen  173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLAL  251 (691)
T ss_pred             ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEE
Confidence            9999999999998887763321        11224555555 44589999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCee----eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          554 AMSPDGRYMASGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       554 ~~sp~g~~L~s~~~dg~I~iwD~~~~~~----~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      +..+++.+++++|.|+.|..+...+++.    ......|...|.+++..++  .+++||.|+++.+-....
T Consensus       252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             EEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence            9999999999999999999998766533    2233478888999998876  899999999998877655

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.81  E-value=5.5e-18  Score=183.96  Aligned_cols=268  Identities=20%  Similarity=0.257  Sum_probs=203.9

Q ss_pred             ceecCCCCCCceeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCC
Q 006220          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (656)
Q Consensus       331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (656)
                      .+.+|+...|..+.+. +.....|+|++|+|. ..+||.|+.+|.|.+||+.......                      
T Consensus       223 ~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~----------------------  279 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP----------------------  279 (555)
T ss_pred             eEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC----------------------
Confidence            5778888878665554 455778999999995 7788999999999999998643211                      


Q ss_pred             CceeeEEeecCccCEEEEEEccCCCE--EEEEeCCCeEEEEeccCCceeE------Eee------CCCccEEEEEEec-C
Q 006220          410 RKRSYTLYQGHSGPVYSASFSPLGDF--ILSSSADTTIRLWSTKLNANLV------CYK------GHNYPVWDVQFNP-Q  474 (656)
Q Consensus       410 ~~~~~~~l~~h~~~V~~l~~spd~~~--L~s~s~Dg~I~lwd~~~~~~~~------~~~------~h~~~V~~l~~sp-~  474 (656)
                      ..........|..+|+.+.|..+-.-  ++++|.||.|..|+++.-....      ...      .....++++.|.+ +
T Consensus       280 ~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~  359 (555)
T KOG1587|consen  280 PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD  359 (555)
T ss_pred             CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC
Confidence            01233345579999999999775544  9999999999999877433211      011      1234688999998 5


Q ss_pred             CCEEEEEECCCcEEEEECCCC--------ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCeeEEEEec
Q 006220          475 GHYFASSSHDRTARIWSMDRI--------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVRIFIG  545 (656)
Q Consensus       475 ~~~l~sgs~Dg~i~lwd~~~~--------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~-~~~~~~~~~~  545 (656)
                      ...|++|+.+|.|.--+-...        +....+..|.+.|.++.++|-+..++..+.|.+|+||... ...++..+..
T Consensus       360 p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~  439 (555)
T KOG1587|consen  360 PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS  439 (555)
T ss_pred             CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh
Confidence            667999999999887443222        2233556788999999999988777666669999999987 6677777777


Q ss_pred             CCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCC--eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          546 HRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASG--RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       546 h~~~i~~l~~sp~g-~~L~s~~~dg~I~iwD~~~~--~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      +...+++++|||.. ..++++..||.|.+||+...  .++.+..-+....+.+.|++.|+.|++|+..|++.+|++...
T Consensus       440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            88889999999965 47788888999999999643  445555455667778889999999999999999999999654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.80  E-value=1e-18  Score=181.66  Aligned_cols=117  Identities=26%  Similarity=0.487  Sum_probs=102.1

Q ss_pred             eeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-------eeEEEEecCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 006220          508 VDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-------ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       508 V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~-------~~~~~~~~h~~~i~~l~~sp-~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      |+.+.|.| +...|++++.||.|++|.+..+       .+...+++|...|+++.|+| -...|++++.|-+|++||+++
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            44555665 4556999999999999998754       34567889999999999999 456899999999999999999


Q ss_pred             CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      ++....+.+|++.|.+++|||+|+.+++.+.||+|+||.-++++..
T Consensus       710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p  755 (1012)
T KOG1445|consen  710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP  755 (1012)
T ss_pred             hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence            9999999999999999999999999999999999999998876643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.6e-17  Score=155.17  Aligned_cols=241  Identities=18%  Similarity=0.241  Sum_probs=182.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  432 (656)
                      .|.+-+|+|.+++|++|..+|.|-+.++........                  .......+...++|.++|+.++|.  
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa------------------~~~gk~~iv~eqahdgpiy~~~f~--   71 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA------------------EPPGKLKIVPEQAHDGPIYYLAFH--   71 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc------------------CCCCCcceeeccccCCCeeeeeee--
Confidence            355668899999999999999999999875211110                  011123445568999999999998  


Q ss_pred             CCEEEEEeCCCeEEEEeccCCce------eE--EeeCC-----CccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220          433 GDFILSSSADTTIRLWSTKLNAN------LV--CYKGH-----NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~------~~--~~~~h-----~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~  499 (656)
                      ..+|++|+. |.|+-|..+....      +.  ...-|     -..|+.+...|..+.+++++.|+.++.||+++++..+
T Consensus        72 d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r  150 (325)
T KOG0649|consen   72 DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR  150 (325)
T ss_pred             hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence            567777764 9999998653322      00  01112     2458899999988888888899999999999999999


Q ss_pred             EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec---------C-CCCeEEEEEcCCCCEEEEEECCC
Q 006220          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---------H-RSMILSLAMSPDGRYMASGDEDG  569 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~---------h-~~~i~~l~~sp~g~~L~s~~~dg  569 (656)
                      .++||...|.++.--.....+++|+.||++|+||.++++++..+..         | ...|-+++.+  ..+|++|+. .
T Consensus       151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p  227 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-P  227 (325)
T ss_pred             EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-C
Confidence            9999999999999855566799999999999999999999987643         2 2246666654  568888764 5


Q ss_pred             cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       570 ~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      .+.+|.+++.++...+. -.++|..+.|..+  .+++++..+.|.-|.+..
T Consensus       228 ~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  228 KLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             ceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeecc
Confidence            79999999988776663 3345777888644  678888888899998754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=4.4e-18  Score=164.34  Aligned_cols=195  Identities=17%  Similarity=0.309  Sum_probs=161.7

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~  503 (656)
                      -.|+.|++.|.+|++|+.||.|.|||+.|...-..+.+|..||++++||++|+.|+|+|.|..|.+||+..+.++..+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            6899999999999999999999999999999888899999999999999999999999999999999999999998887 


Q ss_pred             CCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEEecC----CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          504 HLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGH----RSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       504 ~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~~h----~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      ..++|..+.|||.. +..++.-.+..-.+-++..+...-.-...    .....+..|.+.|+++++|...|.+.++|..+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            56899999999954 33333334444555555442221111111    11223446889999999999999999999999


Q ss_pred             CeeeEeeeCCC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          579 GRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       579 ~~~~~~~~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      .+++..++-.+ ..|.++.++..|+.|+.-+.|..||.|++.
T Consensus       185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            99999888666 789999999999999999999999999987

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.80  E-value=6.6e-18  Score=161.38  Aligned_cols=241  Identities=22%  Similarity=0.363  Sum_probs=181.0

Q ss_pred             eeEEeecCccCEEEEEEccCCC-EEEEEeCC-------CeEEEEeccCC---------ceeEEee-CCCccEEEEEEecC
Q 006220          413 SYTLYQGHSGPVYSASFSPLGD-FILSSSAD-------TTIRLWSTKLN---------ANLVCYK-GHNYPVWDVQFNPQ  474 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~spd~~-~L~s~s~D-------g~I~lwd~~~~---------~~~~~~~-~h~~~V~~l~~sp~  474 (656)
                      ....+..|.+.|..++-+|-.+ .|+++..+       ..+.||.+...         +++..+. .+-+.|.|+.|.|+
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn  134 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN  134 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence            3455677899999999999665 55555442       24789987532         2333333 34568999999999


Q ss_pred             CCEEEEEECCCcEEEEECCCCce-eEEec-----CCCCCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEE-ec
Q 006220          475 GHYFASSSHDRTARIWSMDRIQP-LRIMA-----GHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIF-IG  545 (656)
Q Consensus       475 ~~~l~sgs~Dg~i~lwd~~~~~~-~~~~~-----~~~~~V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~  545 (656)
                      +..+++-. |..|.+|+++.... +..+.     ++....++-+|+|  +|+.+++. .|++++.||+++..+...+ ..
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA  212 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA  212 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence            99888876 88999999987665 32222     3455678889988  77777776 5899999999988766544 46


Q ss_pred             CCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCC
Q 006220          546 HRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       546 h~~~i~~l~~sp~g~-~L~s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      |...|..+.|+|+-+ +|++|+.||.|+|||++.- .++..+.+|...|+++.|+|. .+++.+||.|..|.+|-..+..
T Consensus       213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence            888899999999865 6889999999999999864 578889999999999999994 6789999999999999876544


Q ss_pred             ceeecc--------------cccCCccccccccccCCCCCeEEEEEc
Q 006220          623 KVLKTE--------------EKSGTNRLRSLKTLPTKSTPVYSLQVL  655 (656)
Q Consensus       623 ~~~~~~--------------~~~~~~~~~~l~~~p~~~~pv~sv~Ft  655 (656)
                      .....+              ++..+-.--++.++..+...||+++++
T Consensus       293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS  339 (370)
T KOG1007|consen  293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS  339 (370)
T ss_pred             cccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence            222211              111112223567888899999999986

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.79  E-value=3e-17  Score=171.76  Aligned_cols=239  Identities=19%  Similarity=0.341  Sum_probs=188.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  432 (656)
                      .|..++|-|||+.|+.+ .+..+.|||.+.                            +.....+.+|...|+|++|+.|
T Consensus        14 ci~d~afkPDGsqL~lA-Ag~rlliyD~nd----------------------------G~llqtLKgHKDtVycVAys~d   64 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILA-AGSRLLVYDTSD----------------------------GTLLQPLKGHKDTVYCVAYAKD   64 (1081)
T ss_pred             chheeEECCCCceEEEe-cCCEEEEEeCCC----------------------------cccccccccccceEEEEEEccC
Confidence            68999999999998887 567899999875                            3456778999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeccCCc--------eeEEee---------------------------C--CCccEEEEEEecCC
Q 006220          433 GDFILSSSADTTIRLWSTKLNA--------NLVCYK---------------------------G--HNYPVWDVQFNPQG  475 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~--------~~~~~~---------------------------~--h~~~V~~l~~sp~~  475 (656)
                      |+.++||+.|..|.+|+-.-..        .+.++.                           .  ....|.+.+|..||
T Consensus        65 GkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDG  144 (1081)
T KOG1538|consen   65 GKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDG  144 (1081)
T ss_pred             CceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCC
Confidence            9999999999999999854211        111110                           0  12357778899999


Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEec--CCCCCeeEEEEcCCC-----CEEEEEECCCcEEEEeCCCCeeEEEEecCCC
Q 006220          476 HYFASSSHDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINC-----NYIATGSSDKTVRLWDVSSGECVRIFIGHRS  548 (656)
Q Consensus       476 ~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~-----~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~  548 (656)
                      .+|+.|-.+|+|.+-+-.....+++-+  |..++|.+++|+|+.     ..+++.....++.+|.+. |+.+..-..-.-
T Consensus       145 qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~F  223 (1081)
T KOG1538|consen  145 QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNF  223 (1081)
T ss_pred             cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCC
Confidence            999999999999998755444444433  567899999999965     467777777788888764 444432222333


Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ...|+.+.++|.++..|+.|+.+.+|- +.|-.+.++-.....||+++..|++++++.|+.||+|-.|++...+
T Consensus       224 dP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST  296 (1081)
T KOG1538|consen  224 DPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST  296 (1081)
T ss_pred             CchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence            457899999999999999999999996 6788888877777899999999999999999999999999986544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.79  E-value=1.9e-18  Score=174.52  Aligned_cols=207  Identities=18%  Similarity=0.271  Sum_probs=169.4

Q ss_pred             eeEEeecCccCEEEEEEccCCC--EEEEEeCCCeEEEEeccCC----ceeEEeeCCCccEEEEEEec-CCCEEEEEECCC
Q 006220          413 SYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDR  485 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~spd~~--~L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg  485 (656)
                      ......-|.++|++++|+|...  .+++|+.-|+|-+||+.+.    ..+..+..|..+|.++.|+| +...+++.|.||
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            3445667899999999999764  7889999999999999633    33566778999999999999 567899999999


Q ss_pred             cEEEEECCCCceeEEecC--CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EEEEecCCCCeEEEEEcCCC-CE
Q 006220          486 TARIWSMDRIQPLRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDG-RY  561 (656)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~~~~~h~~~i~~l~~sp~g-~~  561 (656)
                      +|++-|+++...-..+..  ....+..+.|+.....+++|..=|...+||.+++.. ...+.-|...|..|+++|.. .+
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~  337 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF  337 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence            999999987644333332  445567788888888888888878999999998765 56667788899999999965 57


Q ss_pred             EEEEECCCcEEEEeCCCCee----eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          562 MASGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       562 L~s~~~dg~I~iwD~~~~~~----~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      |++++.|++.+|||++.-..    +-....|...|.+..|||.+..|++.+.|+.|+|||..
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            89999999999999976432    23334799999999999988889999999999999984

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=2.1e-18  Score=162.94  Aligned_cols=249  Identities=16%  Similarity=0.257  Sum_probs=182.1

Q ss_pred             CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee-
Q 006220          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-  418 (656)
Q Consensus       340 ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  418 (656)
                      |.-++|.+-+|.+.|+|+.|-.+++ |.+|..-|.|++|++++....                            ..+. 
T Consensus         3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~----------------------------~~~r~   53 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL----------------------------PLIRL   53 (323)
T ss_pred             CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccc----------------------------hhhhh
Confidence            4455777889999999999988776 888999999999999863321                            1122 


Q ss_pred             cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee------------------------------------------
Q 006220          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL------------------------------------------  456 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~------------------------------------------  456 (656)
                      .|...|+.+.--|+ ..|.+-+.|+.+.+|++..+..+                                          
T Consensus        54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D  132 (323)
T KOG0322|consen   54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD  132 (323)
T ss_pred             hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence            34556666666654 44566666666777765431110                                          


Q ss_pred             -------EEe----eCCCccEEEEEEec-CCC--EEEEEECCCcEEEEECCCCc----------eeEEecCCCCCeeEEE
Q 006220          457 -------VCY----KGHNYPVWDVQFNP-QGH--YFASSSHDRTARIWSMDRIQ----------PLRIMAGHLSDVDCVR  512 (656)
Q Consensus       457 -------~~~----~~h~~~V~~l~~sp-~~~--~l~sgs~Dg~i~lwd~~~~~----------~~~~~~~~~~~V~~v~  512 (656)
                             ...    .+..+.+.|..|.- .+.  .++.|-.+|.+.+||+.++.          .......|..+|.++.
T Consensus       133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld  212 (323)
T KOG0322|consen  133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD  212 (323)
T ss_pred             cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence                   000    01123344444322 233  34566689999999998863          3334457899999999


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCC--ee-EE-EEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC
Q 006220          513 WHINCNYIATGSSDKTVRLWDVSSG--EC-VR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH  588 (656)
Q Consensus       513 ~~p~~~~l~tgs~dg~V~iwd~~~~--~~-~~-~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h  588 (656)
                      |.+....=++|+.+..+.+|++...  .+ ++ ...-....|..+.+-||++.+|+++.||+|+||..++.+++..++-|
T Consensus       213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH  292 (323)
T KOG0322|consen  213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH  292 (323)
T ss_pred             echhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh
Confidence            9987766778888889999988643  22 11 22223345888999999999999999999999999999999999999


Q ss_pred             CccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          589 TSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       589 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      .+.|.+++|+|+..++|+++.|+.|.+|++
T Consensus       293 sagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  293 SAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999986

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.78  E-value=6.2e-17  Score=154.98  Aligned_cols=284  Identities=18%  Similarity=0.245  Sum_probs=201.6

Q ss_pred             CCceeEEEEeeCCCCeEEEEEc--CC-CCEEEEEeC----CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCc
Q 006220          339 LPSVSFYTFINTHNGLNCASIS--QD-GSLVAGGFS----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK  411 (656)
Q Consensus       339 ~ps~~~~~~~~~~~~V~~l~fs--~d-g~~La~g~~----dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (656)
                      .+..+.++-.+.+-.+.++.||  ++ +-+||.|+-    ...|.|-.+.....                         .
T Consensus        32 ~~r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-------------------------e   86 (364)
T KOG0290|consen   32 NPRRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-------------------------E   86 (364)
T ss_pred             CcccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-------------------------c
Confidence            3444444556667789999998  33 456888863    45677776653111                         0


Q ss_pred             eeeEEeecCccCEEEEEEccCCC-----EEEEEeCCCeEEEEeccCCceeE---------EeeCCCccEEEEEEec-CCC
Q 006220          412 RSYTLYQGHSGPVYSASFSPLGD-----FILSSSADTTIRLWSTKLNANLV---------CYKGHNYPVWDVQFNP-QGH  476 (656)
Q Consensus       412 ~~~~~l~~h~~~V~~l~~spd~~-----~L~s~s~Dg~I~lwd~~~~~~~~---------~~~~h~~~V~~l~~sp-~~~  476 (656)
                      ........|.-|++.+.|.|+..     +|++++ | .+|+|.+.......         .-..+..|++++.|+. +.+
T Consensus        87 ~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~  164 (364)
T KOG0290|consen   87 LVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN  164 (364)
T ss_pred             eeccCCCCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc
Confidence            11111256899999999999873     455543 3 69999987422211         1123677999999998 778


Q ss_pred             EEEEEECCCcEEEEECCCCce---eEEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEEec---CCCC
Q 006220          477 YFASSSHDRTARIWSMDRIQP---LRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIG---HRSM  549 (656)
Q Consensus       477 ~l~sgs~Dg~i~lwd~~~~~~---~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~~---h~~~  549 (656)
                      ++.++|-|-+..|||++++..   ...+-.|...|..++|...+ +.+|+.+.||.||+||++.-+.-..+-.   ...+
T Consensus       165 ~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p  244 (364)
T KOG0290|consen  165 LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP  244 (364)
T ss_pred             eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence            999999999999999998643   34556899999999999754 5788999999999999997654433322   2457


Q ss_pred             eEEEEEcCC-CCEEEEEE-CCCcEEEEeCCC-CeeeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCcee
Q 006220          550 ILSLAMSPD-GRYMASGD-EDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       550 i~~l~~sp~-g~~L~s~~-~dg~I~iwD~~~-~~~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      ...++|++. -+++|+-. ....|.|.|++. +.++.++++|.+.|++++|.|. +..|+|+|.|..+-|||+.......
T Consensus       245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~  324 (364)
T KOG0290|consen  245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN  324 (364)
T ss_pred             ceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC
Confidence            888999884 56788754 445799999985 5788999999999999999995 5689999999999999998765411


Q ss_pred             eccc---ccCCccccccccccCCCCCe
Q 006220          626 KTEE---KSGTNRLRSLKTLPTKSTPV  649 (656)
Q Consensus       626 ~~~~---~~~~~~~~~l~~~p~~~~pv  649 (656)
                      ...+   -.....+.++.+.+.++.-|
T Consensus       325 ~~dPilay~a~~EVNqi~Ws~~~~Dwi  351 (364)
T KOG0290|consen  325 GEDPILAYTAGGEVNQIQWSSSQPDWI  351 (364)
T ss_pred             CCCchhhhhccceeeeeeecccCCCEE
Confidence            1111   02234455666666655444

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.7e-18  Score=167.85  Aligned_cols=228  Identities=23%  Similarity=0.384  Sum_probs=174.1

Q ss_pred             CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC--CCEEEEEeC
Q 006220          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL--GDFILSSSA  441 (656)
Q Consensus       364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd--~~~L~s~s~  441 (656)
                      +.+|++.+.|.|++||..+                            ...+..+.+|...+..+.|..+  ...+.+|+.
T Consensus        41 ~~vav~lSngsv~lyd~~t----------------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss   92 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT----------------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSS   92 (376)
T ss_pred             eeEEEEecCCeEEEEeccc----------------------------hhhhheecCCCCcccceEEecCCCCCeeEEecc
Confidence            6799999999999999875                            3455667788888899999773  457899999


Q ss_pred             CCeEEEEeccCCceeEE--eeCCC-ccEEEEEEecCCCEEEEEE----CCCcEEEEECCCCce-eEEe-cCCCCCeeEEE
Q 006220          442 DTTIRLWSTKLNANLVC--YKGHN-YPVWDVQFNPQGHYFASSS----HDRTARIWSMDRIQP-LRIM-AGHLSDVDCVR  512 (656)
Q Consensus       442 Dg~I~lwd~~~~~~~~~--~~~h~-~~V~~l~~sp~~~~l~sgs----~Dg~i~lwd~~~~~~-~~~~-~~~~~~V~~v~  512 (656)
                      ||+|++||+++......  +..+. .+..+++.+..++.+++|+    .+-.+.+||++..+. ++.+ ..|..+|+++.
T Consensus        93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr  172 (376)
T KOG1188|consen   93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR  172 (376)
T ss_pred             CCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence            99999999998766543  34444 4667777777888888886    467899999998766 5554 47999999999


Q ss_pred             EcC-CCCEEEEEECCCcEEEEeCCCCe---eEEEEecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeeE----
Q 006220          513 WHI-NCNYIATGSSDKTVRLWDVSSGE---CVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRCVT----  583 (656)
Q Consensus       513 ~~p-~~~~l~tgs~dg~V~iwd~~~~~---~~~~~~~h~~~i~~l~~sp~g-~~L~s~~~dg~I~iwD~~~~~~~~----  583 (656)
                      ||| +.+.|++||.||.|.+||+....   .+.....|.+.|.++.|..++ +.|.+-+-.+...+|++..+.+..    
T Consensus       173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~  252 (376)
T KOG1188|consen  173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN  252 (376)
T ss_pred             ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence            999 56899999999999999997542   122233466779999998776 357777777888888875432111    


Q ss_pred             ---------------------------------------------------------eeeC-CCccEEEEEEcCCCCEEE
Q 006220          584 ---------------------------------------------------------PLMG-HTSCVWTLAYSCEGSLLA  605 (656)
Q Consensus       584 ---------------------------------------------------------~~~~-h~~~V~~l~~s~~~~~l~  605 (656)
                                                                               .+.+ |..-|.++.|...+.++.
T Consensus       253 ~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~  332 (376)
T KOG1188|consen  253 PDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLY  332 (376)
T ss_pred             ccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceee
Confidence                                                                     1122 334566677777788999


Q ss_pred             EEECCCcEEEEeCC
Q 006220          606 SGSADCTVKLWDVT  619 (656)
Q Consensus       606 sgs~Dg~I~iWd~~  619 (656)
                      |||.||.+.+|...
T Consensus       333 TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  333 TGGEDGLLQAWKVE  346 (376)
T ss_pred             ccCCCceEEEEecC
Confidence            99999999999963

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=3.9e-19  Score=190.19  Aligned_cols=247  Identities=24%  Similarity=0.450  Sum_probs=197.0

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      +.+|.+.|.|+.|...|.++++|+.|..|+||++.+                            ........||++.|+.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et----------------------------~~~lAs~rGhs~ditd  237 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET----------------------------ARCLASCRGHSGDITD  237 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccc----------------------------hhhhccCCCCccccch
Confidence            467889999999999999999999999999999775                            2345567899999999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC-CC-----cee--
Q 006220          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RI-----QPL--  498 (656)
Q Consensus       427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~-~~-----~~~--  498 (656)
                      ++.+..+.+++++|.|..|++|.+.++..+..+.+|++.|++++|+|-.    +.+.||++++||.+ ..     .+.  
T Consensus       238 lavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~  313 (1113)
T KOG0644|consen  238 LAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKF  313 (1113)
T ss_pred             hccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCc
Confidence            9999988899999999999999999999999999999999999999954    77899999999987 10     000  


Q ss_pred             ------EE----------ecC------CCCCeeEEEEcCCCCEEEEEE-----------CCCcEEEEeCCCCeeEEEEec
Q 006220          499 ------RI----------MAG------HLSDVDCVRWHINCNYIATGS-----------SDKTVRLWDVSSGECVRIFIG  545 (656)
Q Consensus       499 ------~~----------~~~------~~~~V~~v~~~p~~~~l~tgs-----------~dg~V~iwd~~~~~~~~~~~~  545 (656)
                            ..          ..+      ..-.+.+++|+.+.-.+++++           .+..+.+|++.+|...+...+
T Consensus       314 ~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g  393 (1113)
T KOG0644|consen  314 TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG  393 (1113)
T ss_pred             ccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc
Confidence                  00          000      001123344444443344433           345577899999999999999


Q ss_pred             CCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          546 HRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       546 h~~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      |...+..+.++|- .+...+++.||...|||+-.|.+++.+....+.+...+||++|+.++....-|.+.|.....++..
T Consensus       394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence            9999999999994 456668999999999999999888776543456778899999999999888899999988766554


Q ss_pred             e
Q 006220          625 L  625 (656)
Q Consensus       625 ~  625 (656)
                      .
T Consensus       474 k  474 (1113)
T KOG0644|consen  474 K  474 (1113)
T ss_pred             c
Confidence            3

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.78  E-value=1e-17  Score=162.86  Aligned_cols=249  Identities=17%  Similarity=0.314  Sum_probs=190.4

Q ss_pred             eeCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE--eecC
Q 006220          348 INTHNGLNCASISQ-----DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL--YQGH  420 (656)
Q Consensus       348 ~~~~~~V~~l~fs~-----dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~h  420 (656)
                      .+|...|..++|++     +...+|+. ....+.||........                         ..+..  -..|
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatv-G~~rvtiy~c~~d~~i-------------------------r~lq~y~D~d~   88 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATV-GGNRVTIYECPGDGGI-------------------------RLLQSYADEDH   88 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEe-CCcEEEEEEECCccce-------------------------eeeeeccCCCC
Confidence            34556788888874     33455555 4567889987642210                         11111  1146


Q ss_pred             ccCEEEEEEccC----CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 006220          421 SGPVYSASFSPL----GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI  495 (656)
Q Consensus       421 ~~~V~~l~~spd----~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~  495 (656)
                      ....+.++|+-+    +.+++.|+.-|.|+|.|+.++++...+.+|...|..+.++|+ .+++++||.|.+|++|++++.
T Consensus        89 ~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~  168 (385)
T KOG1034|consen   89 DESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD  168 (385)
T ss_pred             CcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence            777888888764    347999999999999999999999999999999999999995 478999999999999999999


Q ss_pred             ceeEEec---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee------E-------------------E---EEe
Q 006220          496 QPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC------V-------------------R---IFI  544 (656)
Q Consensus       496 ~~~~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~------~-------------------~---~~~  544 (656)
                      .++.++.   +|...|.++.|+++|.+|++++.|.++.+|++...+.      .                   .   +-.
T Consensus       169 ~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d  248 (385)
T KOG1034|consen  169 VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD  248 (385)
T ss_pred             eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence            9998876   7999999999999999999999999999999973211      0                   0   112


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CC-------------eeeEeeeCCCccEEEEEE--cCCCCEEEEEE
Q 006220          545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA-SG-------------RCVTPLMGHTSCVWTLAY--SCEGSLLASGS  608 (656)
Q Consensus       545 ~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~-~~-------------~~~~~~~~h~~~V~~l~~--s~~~~~l~sgs  608 (656)
                      -|..+|.|+.|-  |.++++-+.++.|..|... -+             ..+.++.-....|+-+.|  .+-+++||.|.
T Consensus       249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn  326 (385)
T KOG1034|consen  249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN  326 (385)
T ss_pred             cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence            366677777776  7899999999999999862 11             122333344456676655  56688999999


Q ss_pred             CCCcEEEEeCCCCCce
Q 006220          609 ADCTVKLWDVTTSTKV  624 (656)
Q Consensus       609 ~Dg~I~iWd~~~~~~~  624 (656)
                      ..|.|.+||+++.+..
T Consensus       327 q~g~v~vwdL~~~ep~  342 (385)
T KOG1034|consen  327 QSGKVYVWDLDNNEPP  342 (385)
T ss_pred             CCCcEEEEECCCCCCc
Confidence            9999999999987763

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=8.8e-16  Score=161.71  Aligned_cols=264  Identities=14%  Similarity=0.231  Sum_probs=174.8

Q ss_pred             cceecCCCCC-CceeEEEEeeCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220          330 NRVHLSSAAL-PSVSFYTFINTHNGLNCASISQDGSLVAGGF-SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (656)
Q Consensus       330 ~~v~l~~~~~-ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~-~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (656)
                      +.+.+|+... ..........+.+....++++|++++|++++ .++.|.+|++...+..                     
T Consensus        12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l---------------------   70 (330)
T PRK11028         12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL---------------------   70 (330)
T ss_pred             CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce---------------------
Confidence            3455554421 2223333444556788999999999987764 5788999998631110                     


Q ss_pred             CCCceeeEEeecCccCEEEEEEccCCCEEEEEeC-CCeEEEEeccCCc----eeEEeeCCCccEEEEEEecCCCEEEEEE
Q 006220          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSS  482 (656)
Q Consensus       408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~-Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~~~~l~sgs  482 (656)
                          ..... ....+....++|+|+++++++++. ++.|.+|++++..    .+..+. +.....+++++|+++++++++
T Consensus        71 ----~~~~~-~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~  144 (330)
T PRK11028         71 ----TFAAE-SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPC  144 (330)
T ss_pred             ----EEeee-ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEee
Confidence                00010 112234568999999998887764 8899999997432    222222 233467789999999886655


Q ss_pred             -CCCcEEEEECCCCceeE-------EecCCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCC--Ce--eEEEEecC---
Q 006220          483 -HDRTARIWSMDRIQPLR-------IMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSS--GE--CVRIFIGH---  546 (656)
Q Consensus       483 -~Dg~i~lwd~~~~~~~~-------~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~--~~--~~~~~~~h---  546 (656)
                       .++.|.+||+++...+.       ... .......++|+|+++++++++. +++|.+||+..  +.  .+..+..+   
T Consensus       145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~  223 (330)
T PRK11028        145 LKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD  223 (330)
T ss_pred             CCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence             66999999997633221       111 2244678999999999988876 89999999973  32  23333221   


Q ss_pred             ---CCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeeEeeeCCC---ccEEEEEEcCCCCEEEEEEC-CCcEEEEeC
Q 006220          547 ---RSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHT---SCVWTLAYSCEGSLLASGSA-DCTVKLWDV  618 (656)
Q Consensus       547 ---~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~~~~~~~~h~---~~V~~l~~s~~~~~l~sgs~-Dg~I~iWd~  618 (656)
                         ......+.++|+|++|+++. .++.|.+|++........+.++.   .....+.|+|+|++|++++. +++|.+|++
T Consensus       224 ~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        224 FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence               11234688999999999885 47899999986543222222221   24567899999999988775 899999998


Q ss_pred             CCC
Q 006220          619 TTS  621 (656)
Q Consensus       619 ~~~  621 (656)
                      ...
T Consensus       304 ~~~  306 (330)
T PRK11028        304 DGE  306 (330)
T ss_pred             cCC
Confidence            643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.77  E-value=1.2e-17  Score=161.97  Aligned_cols=232  Identities=23%  Similarity=0.354  Sum_probs=181.8

Q ss_pred             CCeEEEEEc-------CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc--
Q 006220          352 NGLNCASIS-------QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG--  422 (656)
Q Consensus       352 ~~V~~l~fs-------~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~--  422 (656)
                      ..|...+|-       |+..++|+.+.+.-|++||..++...+..                          .-..|..  
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy--------------------------~~ydh~de~  158 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASY--------------------------RAYDHQDEY  158 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccch--------------------------hhhhhHHhh
Confidence            346666664       78899999999999999998764432211                          1112333  


Q ss_pred             -CEEEEEEccCCCEEEEEeCCCeEEEEec-cCCceeEEe-------eCCCccEEEEEEecCC-CEEEEEECCCcEEEEEC
Q 006220          423 -PVYSASFSPLGDFILSSSADTTIRLWST-KLNANLVCY-------KGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSM  492 (656)
Q Consensus       423 -~V~~l~~spd~~~L~s~s~Dg~I~lwd~-~~~~~~~~~-------~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~  492 (656)
                       .-.++.|+|||..|++|.. ..|+++|+ +.|.....+       .+..+-|.+++|+|.. ..+++|+...++-||.-
T Consensus       159 taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~  237 (406)
T KOG2919|consen  159 TAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND  237 (406)
T ss_pred             hhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence             3358999999999988765 68999999 444322111       2336678999999955 48999999999999999


Q ss_pred             CCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCC-eeEEEEecCCC-CeEE--EEEcCCCCEEEEEEC
Q 006220          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSG-ECVRIFIGHRS-MILS--LAMSPDGRYMASGDE  567 (656)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~~-~~~~~~~~h~~-~i~~--l~~sp~g~~L~s~~~  567 (656)
                      ....++..+-+|.+.|+.+.|+++|+.|++|+. |..|..||++.. .++..+..|.+ .-..  ....|+|++|++|+.
T Consensus       238 ~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t  317 (406)
T KOG2919|consen  238 DGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT  317 (406)
T ss_pred             CCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC
Confidence            999999999999999999999999999999985 678999999864 45555666655 2233  345688999999999


Q ss_pred             CCcEEEEeCCC-CeeeEeeeCCCccEEEEEEcCCCCEEEEEECC
Q 006220          568 DGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD  610 (656)
Q Consensus       568 dg~I~iwD~~~-~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D  610 (656)
                      ||.|++||+.. |..+..+..|+..|+.++++|--.++++++..
T Consensus       318 dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  318 DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            99999999988 77788888899999999999998888888765

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=3.9e-16  Score=154.35  Aligned_cols=236  Identities=18%  Similarity=0.279  Sum_probs=181.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ..++.+.|+.|...|.+|+.||+ ++|+......                            +.........|.-+-|+ 
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k----------------------------~~~~~~~~~~IvEmLFS-   55 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK----------------------------CFSKDTEGVSIVEMLFS-   55 (391)
T ss_pred             cceeeeeeccceeEEEccCCCce-eEEecCchHH----------------------------hhcccCCCeEEEEeecc-
Confidence            34677779999999999999885 6777664211                            00011112335555566 


Q ss_pred             CCCEEEEEeCC--CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC---CCC
Q 006220          432 LGDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---HLS  506 (656)
Q Consensus       432 d~~~L~s~s~D--g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~---~~~  506 (656)
                       ..+++..+.+  ..+++.+++.+..+..+. ...+|.++.++.  +.++++-.+. |+|||+++.+.+.++..   +..
T Consensus        56 -SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~  130 (391)
T KOG2110|consen   56 -SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPK  130 (391)
T ss_pred             -cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCcc
Confidence             4555555544  348999998777776655 456899999974  4566665544 99999999998887763   444


Q ss_pred             CeeEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCc-EEEEeCCCCeeeE
Q 006220          507 DVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT-IMMWDLASGRCVT  583 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs--~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~-I~iwD~~~~~~~~  583 (656)
                      .+.++++++.+.|++.-+  ..|.|.+||..+-+.+..+..|.+++-|++|+++|.+||++++.|+ |+|+.+.+|+.+.
T Consensus       131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~  210 (391)
T KOG2110|consen  131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY  210 (391)
T ss_pred             ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee
Confidence            566666666777988633  4689999999999999999999999999999999999999999886 7999999999999


Q ss_pred             eeeCCC--ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          584 PLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       584 ~~~~h~--~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      +++...  ..|++++|+|++++|++.|..++|+||.+....
T Consensus       211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            997543  578999999999999999999999999997654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.75  E-value=7.7e-17  Score=156.47  Aligned_cols=239  Identities=18%  Similarity=0.248  Sum_probs=186.6

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .++-...+|+|.+|++|++.+|++.....|.||......                         .......+..|...|+
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------------------~w~~~htls~Hd~~vt   59 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------------------LWEPAHTLSEHDKIVT   59 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC-------------------------CceeceehhhhCccee
Confidence            445556789999999999999999999999999987421                         1345677889999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccC---CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee----
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKL---NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL----  498 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~---~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~----  498 (656)
                      +|.|+|..+.|++|+.|..-++|....   +.....+..++..++++.|+|.++.|++||.-+.|.+|-++...--    
T Consensus        60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK  139 (361)
T KOG1523|consen   60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK  139 (361)
T ss_pred             EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence            999999999999999999999999832   2344555668899999999999999999999999999988764432    


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-----C-------------CeeEEEEecCCCCeEEEEEcCCCC
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-----S-------------GECVRIFIGHRSMILSLAMSPDGR  560 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~-----~-------------~~~~~~~~~h~~~i~~l~~sp~g~  560 (656)
                      .+-..+.+.|++++|||++-.+++|+.|+.+|++..-     .             |+.+..+....+.+..+.|+|+|.
T Consensus       140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~  219 (361)
T KOG1523|consen  140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN  219 (361)
T ss_pred             hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence            2233567889999999999999999999999998641     0             223333434567899999999999


Q ss_pred             EEEEEECCCcEEEEeCCCCe-eeEeeeCCCccEEEEEEcCCCCEEEEEECC
Q 006220          561 YMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCEGSLLASGSAD  610 (656)
Q Consensus       561 ~L~s~~~dg~I~iwD~~~~~-~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D  610 (656)
                      .|+-.+-|..+.+-|..... .+.....-.-+..++.|-.+.. ++.++.|
T Consensus       220 ~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~~  269 (361)
T KOG1523|consen  220 RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENS-VVAAGYD  269 (361)
T ss_pred             EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCc-eeecCCC
Confidence            99999999999999976554 3333333336677777754433 3344444

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.5e-16  Score=157.44  Aligned_cols=289  Identities=15%  Similarity=0.205  Sum_probs=207.5

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      -+.+|.+.|+++.||.++++||+|+.|-.+++|++.......+.                     ...-..-..|...|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~---------------------KPI~~~~~~H~SNIF  109 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP---------------------KPIGVMEHPHRSNIF  109 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC---------------------CCceeccCccccceE
Confidence            35788899999999999999999999999999998752211110                     011112234668999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC--CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc-eeE--E
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-PLR--I  500 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~-~~~--~  500 (656)
                      |++|...++++++|..+++|.+.|+.+.+.+..+..  ..+.|..+..+|..+.|++.+.++.|.+||.+... ++.  .
T Consensus       110 ~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~  189 (609)
T KOG4227|consen  110 SLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL  189 (609)
T ss_pred             EEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee
Confidence            999999999999999999999999999888776652  23589999999999999999999999999998654 332  2


Q ss_pred             ecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCee-EEE---EecCC---CCeEEEEEcCCCCEEEEEECCCcEE
Q 006220          501 MAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGEC-VRI---FIGHR---SMILSLAMSPDGRYMASGDEDGTIM  572 (656)
Q Consensus       501 ~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~-~~~---~~~h~---~~i~~l~~sp~g~~L~s~~~dg~I~  572 (656)
                      ..........+.|+|. ..+|++.+..+-+-+||++.... +..   +.+-.   ..-....|+|+|..+++--....-.
T Consensus       190 ~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~  269 (609)
T KOG4227|consen  190 PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL  269 (609)
T ss_pred             ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence            2344566788999995 46778888899999999986432 211   11211   1235678999999998877767778


Q ss_pred             EEeCCCCeeeEeeeCCC-------ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccc--------cCCcccc
Q 006220          573 MWDLASGRCVTPLMGHT-------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK--------SGTNRLR  637 (656)
Q Consensus       573 iwD~~~~~~~~~~~~h~-------~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~--------~~~~~~~  637 (656)
                      +||+-+.++..--..|.       ..+.+++|..|-. +++|+.+-.|++|.+............        ...--..
T Consensus       270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~  348 (609)
T KOG4227|consen  270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK  348 (609)
T ss_pred             EeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence            89998766544333333       2466788876544 999999999999999765433221110        0001112


Q ss_pred             ccccccCCCCCeEEEEEcC
Q 006220          638 SLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       638 ~l~~~p~~~~pv~sv~Ftr  656 (656)
                      -+..+.++.+.+.-|.|++
T Consensus       349 ~~~VLrGHRSv~NQVRF~~  367 (609)
T KOG4227|consen  349 ELTVLRGHRSVPNQVRFSQ  367 (609)
T ss_pred             eeEEEecccccccceeecC
Confidence            3445677777777787764

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=1.9e-16  Score=157.30  Aligned_cols=213  Identities=18%  Similarity=0.276  Sum_probs=169.4

Q ss_pred             EeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          347 FINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      +.+|.+.|..++|+|- ...+|+|+.|.+|.||++........                     .......+.||+..|-
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~---------------------ltepvv~L~gH~rrVg  135 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD---------------------LTEPVVELYGHQRRVG  135 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC---------------------cccceEEEeecceeEE
Confidence            4688999999999994 67799999999999999875332211                     1245678999999999


Q ss_pred             EEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220          426 SASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (656)
Q Consensus       426 ~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  504 (656)
                      -+.|+|... .|+|++.|.+|.+|++.++..+..+. |...|++++|+.+|.+|++++.|+.|+|||.++++.+..-.+|
T Consensus       136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h  214 (472)
T KOG0303|consen  136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH  214 (472)
T ss_pred             EEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc
Confidence            999999764 78899999999999999999998888 9999999999999999999999999999999999999887777


Q ss_pred             CCC-eeEEEEcCCCCEEEEEE---CCCcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEE-EECCCcEEEEeCC
Q 006220          505 LSD-VDCVRWHINCNYIATGS---SDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMAS-GDEDGTIMMWDLA  577 (656)
Q Consensus       505 ~~~-V~~v~~~p~~~~l~tgs---~dg~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s-~~~dg~I~iwD~~  577 (656)
                      .+. -..+.|-.+|..+-||.   ++..+-+||..+-+....+.  ..++.|.---|.++.+.++. |-.|+.|+-|.+.
T Consensus       215 eG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  215 EGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             cCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence            653 34556777888555553   57889999987543222221  23345666667888887765 4579999999987


Q ss_pred             CCee
Q 006220          578 SGRC  581 (656)
Q Consensus       578 ~~~~  581 (656)
                      ...+
T Consensus       295 ~d~P  298 (472)
T KOG0303|consen  295 NEPP  298 (472)
T ss_pred             CCCc
Confidence            6553

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.3e-15  Score=165.68  Aligned_cols=246  Identities=19%  Similarity=0.308  Sum_probs=180.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      |.-.++|.++||+++++|+|..||.|.||.--..                        ......++.+.-|..+|.+++|
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------------------------~~~~~t~t~lHWH~~~V~~L~f  259 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------------------------SDDSETCTLLHWHHDEVNSLSF  259 (792)
T ss_pred             hcccceeEEeccccceEEEeccCCcEEEEecccc------------------------ccccccceEEEecccccceeEE
Confidence            3344899999999999999999999999984320                        1223466778889999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC------
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG------  503 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~------  503 (656)
                      +++|.+|+||+..|.+.+|.+.+++ ..-+..-.++|..+.++|++.+.+....|..|.+....+......+.+      
T Consensus       260 S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~  338 (792)
T KOG1963|consen  260 SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP  338 (792)
T ss_pred             ecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence            9999999999999999999999988 444555688999999999999999999999999997754433333222      


Q ss_pred             -----CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-----------------------------------
Q 006220          504 -----HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-----------------------------------  543 (656)
Q Consensus       504 -----~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-----------------------------------  543 (656)
                           ..+-.+.++++|..+.++..+..|.|.+||+.+...+..+                                   
T Consensus       339 ~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~  418 (792)
T KOG1963|consen  339 STKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEA  418 (792)
T ss_pred             cccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeee
Confidence                 1233456677776666666667777777766433222111                                   


Q ss_pred             ---------------------------------ecCCCCeEEEEEcC-CCC-EEEEEECCCcEEEEeCCCC---------
Q 006220          544 ---------------------------------IGHRSMILSLAMSP-DGR-YMASGDEDGTIMMWDLASG---------  579 (656)
Q Consensus       544 ---------------------------------~~h~~~i~~l~~sp-~g~-~L~s~~~dg~I~iwD~~~~---------  579 (656)
                                                       ..|...+...++.+ ... ..++++.||.++||-+...         
T Consensus       419 ~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~  498 (792)
T KOG1963|consen  419 RIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSN  498 (792)
T ss_pred             eehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccc
Confidence                                             14555544455443 222 7889999999999988321         


Q ss_pred             -eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          580 -RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       580 -~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                       .|...-.-|..++++++|+.||.. ++.+.|++|.+||..+.
T Consensus       499 W~c~~i~sy~k~~i~a~~fs~dGsl-la~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  499 WTCKAIGSYHKTPITALCFSQDGSL-LAVSFDDTITIWDYDTK  540 (792)
T ss_pred             eEEeeeeccccCcccchhhcCCCcE-EEEecCCEEEEecCCCh
Confidence             222222247789999999999964 55667889999999884

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=2.1e-16  Score=164.32  Aligned_cols=211  Identities=23%  Similarity=0.368  Sum_probs=172.0

Q ss_pred             eeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCE--EEEEECCCcEEE
Q 006220          412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY--FASSSHDRTARI  489 (656)
Q Consensus       412 ~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~--l~sgs~Dg~i~l  489 (656)
                      .....+.||++.|.|++..|.|.+|++|+.||+|+||.+.++.|+..+. ..+.|.||+|+|.+..  ||++- ...+.+
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i  468 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLI  468 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence            3456789999999999999999999999999999999999999998887 4568999999997654  33333 333444


Q ss_pred             EECCCC-------------------------------------ceeEEecCCCCCeeEEEEcCCCCEEEEEECC---CcE
Q 006220          490 WSMDRI-------------------------------------QPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTV  529 (656)
Q Consensus       490 wd~~~~-------------------------------------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~V  529 (656)
                      .+..-+                                     .-++..-.|...|..+.||..|.||++...+   ..|
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence            432100                                     1123444688899999999999999997653   579


Q ss_pred             EEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC
Q 006220          530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA  609 (656)
Q Consensus       530 ~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~  609 (656)
                      .|.++.......-|....+.|.++.|+|...+|++++. ..|+|||+..+..++.+......|.+++.+|.|.-|+.|+.
T Consensus       549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~  627 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY  627 (733)
T ss_pred             EEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence            99999887776667666788999999999999988875 68999999998888888877788999999999999999999


Q ss_pred             CCcEEEEeCCCCCcee
Q 006220          610 DCTVKLWDVTTSTKVL  625 (656)
Q Consensus       610 Dg~I~iWd~~~~~~~~  625 (656)
                      |+.+..+|+.-+.+..
T Consensus       628 d~k~~WfDldlsskPy  643 (733)
T KOG0650|consen  628 DKKMCWFDLDLSSKPY  643 (733)
T ss_pred             CCeeEEEEcccCcchh
Confidence            9999999998775543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.72  E-value=1.8e-16  Score=165.23  Aligned_cols=274  Identities=18%  Similarity=0.216  Sum_probs=193.5

Q ss_pred             EcCCCCEEEE--EeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc-CCCE
Q 006220          359 ISQDGSLVAG--GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-LGDF  435 (656)
Q Consensus       359 fs~dg~~La~--g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-d~~~  435 (656)
                      |+.+...+|+  .+..|.|-||++...+......                       +- -.-....|+.+.|.| |...
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv-----------------------~p-~l~Ngt~vtDl~WdPFD~~r  642 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGV-----------------------MP-GLFNGTLVTDLHWDPFDDER  642 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCccc-----------------------cc-ccccCceeeecccCCCChHH
Confidence            4445566665  4567899999998644322100                       00 011346799999999 5568


Q ss_pred             EEEEeCCCeEEEEeccCCc-------eeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecCCCCC
Q 006220          436 ILSSSADTTIRLWSTKLNA-------NLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (656)
Q Consensus       436 L~s~s~Dg~I~lwd~~~~~-------~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~  507 (656)
                      |++++.||.|++|.+..+.       .-..+..|...|+++.|+| -.+.+++++.|.+|++||+.+.+....+.+|.+.
T Consensus       643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdq  722 (1012)
T KOG1445|consen  643 LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQ  722 (1012)
T ss_pred             eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCc
Confidence            9999999999999987543       3466788999999999999 4567999999999999999999999999999999


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EEEEecCC-CCeEEEEEcCCCCEEEEEECC----CcEEEEeCCCC--
Q 006220          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHR-SMILSLAMSPDGRYMASGDED----GTIMMWDLASG--  579 (656)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~~~~~h~-~~i~~l~~sp~g~~L~s~~~d----g~I~iwD~~~~--  579 (656)
                      |..++|+|+|+.+++.+.||+|++|..++++. ++.-.+.. ..--.|.|.-+|+++++.+.|    ..|.+||..+-  
T Consensus       723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~  802 (1012)
T KOG1445|consen  723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL  802 (1012)
T ss_pred             eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC
Confidence            99999999999999999999999999987643 33322221 223457788899999887755    46888887542  


Q ss_pred             eeeEeeeCCC-ccEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCCcee-ecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          580 RCVTPLMGHT-SCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVL-KTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       580 ~~~~~~~~h~-~~V~~l~~s~~~-~~l~sgs~Dg~I~iWd~~~~~~~~-~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      ..+.+..-.. -.+.--.+.+|. -++++|-.|..|.+|.+-....-. ..........-..+.+++....-|.+|.|++
T Consensus       803 ~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K~~CdV~~VEf~~  882 (1012)
T KOG1445|consen  803 RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQKLKCDVMAVEFQV  882 (1012)
T ss_pred             CcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeecccccceeeeehhh
Confidence            2332221110 011111234454 467888899999999987655432 2222233334456777888888888888864

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.72  E-value=2.5e-16  Score=157.29  Aligned_cols=232  Identities=24%  Similarity=0.403  Sum_probs=172.6

Q ss_pred             CccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCce---------eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEE
Q 006220          420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN---------LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (656)
Q Consensus       420 h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~---------~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~l  489 (656)
                      ...+|+++.|.+++. .++||+.|..|++|-+..+..         +..+..|...|+++.|+|+|..+++|+.+|.+.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            346899999999877 999999999999998764322         2345679999999999999999999999999999


Q ss_pred             EECC--------C--------CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEE
Q 006220          490 WSMD--------R--------IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL  553 (656)
Q Consensus       490 wd~~--------~--------~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l  553 (656)
                      |-..        +        ....+.+.+|...|..++|+|+++++++|+.|..+++||+..|+....+..|...+..+
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            9755        2        12335667899999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-------------------CCC----ccEEEEEEcCCCCEEEEEECC
Q 006220          554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-------------------GHT----SCVWTLAYSCEGSLLASGSAD  610 (656)
Q Consensus       554 ~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-------------------~h~----~~V~~l~~s~~~~~l~sgs~D  610 (656)
                      +|.|-++++++-+.|...+.+++...+.+....                   .|.    .....++|+|+|.+|++.+. 
T Consensus       172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag-  250 (434)
T KOG1009|consen  172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG-  250 (434)
T ss_pred             ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc-
Confidence            999999999999999888887775443332211                   111    12345789999999988642 


Q ss_pred             CcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          611 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       611 g~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                          ++++..+......--..+......+..+|.-..|++.+.|++
T Consensus       251 ----~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p  292 (434)
T KOG1009|consen  251 ----LFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP  292 (434)
T ss_pred             ----eeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence                111111111000000011122234556677777777777763

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=6.8e-16  Score=168.11  Aligned_cols=219  Identities=19%  Similarity=0.197  Sum_probs=158.1

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      .+..+...+.+.+|||||+.||.++.+   ..|.+||+.+..                          ......+.+|  
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~--------------------------~~~l~~~~g~--  249 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA--------------------------RKVVASFRGH--  249 (429)
T ss_pred             EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc--------------------------eEEEecCCCc--
Confidence            445667789999999999999987653   369999986421                          1112222233  


Q ss_pred             CEEEEEEccCCCEEEEEe-CCCeEEEE--eccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCC-ce
Q 006220          423 PVYSASFSPLGDFILSSS-ADTTIRLW--STKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRI-QP  497 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s-~Dg~I~lw--d~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~-~~  497 (656)
                       ..+++|+|||+.|+.++ .+|.+.||  |+.++. ...+..+...+....|+|+|..++.++ .+|...+|+++.. ..
T Consensus       250 -~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~  327 (429)
T PRK01742        250 -NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG  327 (429)
T ss_pred             -cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence             34689999999888764 67876665  555544 445556677788999999999877665 5788888876532 22


Q ss_pred             eEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC-
Q 006220          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL-  576 (656)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~-  576 (656)
                      ...+ .+..  .+..|+|+|++|++++.++ +.+||+.++........+  ....+.|+|+|++|+.++.+|.+.+|++ 
T Consensus       328 ~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        328 ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            2333 3433  4678999999999887765 556999988765433222  3456789999999999999998888876 


Q ss_pred             -CCCeeeEeeeCCCccEEEEEEcCC
Q 006220          577 -ASGRCVTPLMGHTSCVWTLAYSCE  600 (656)
Q Consensus       577 -~~~~~~~~~~~h~~~V~~l~~s~~  600 (656)
                       .+|+....+..|.+.+...+|+|-
T Consensus       402 ~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        402 SADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ECCCCceEEccCCCCCCCCcccCCC
Confidence             368888888888888999999984

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=1.6e-16  Score=164.64  Aligned_cols=232  Identities=23%  Similarity=0.417  Sum_probs=176.6

Q ss_pred             CCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220          338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (656)
Q Consensus       338 ~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  417 (656)
                      .....+.++|-+|.++|.|+++++++..+.+|+.||+|+.|++.....         ..+         ..........+
T Consensus       331 ~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d---------p~d---------s~dp~vl~~~l  392 (577)
T KOG0642|consen  331 EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD---------PDD---------SYDPSVLSGTL  392 (577)
T ss_pred             ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC---------ccc---------ccCcchhccce
Confidence            445677899999999999999999999999999999999999863110         000         00112344568


Q ss_pred             ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee---CCCccEEEEEEecCC-CEEEEEECCCcEEEEECC
Q 006220          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMD  493 (656)
Q Consensus       418 ~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~  493 (656)
                      .||.+.|+.+++|+....|++|+.||++++|....... ..+.   .|..| .++.+-... .+.++...-+...+++++
T Consensus       393 ~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P-lsvd~~ss~~a~~~~s~~~~~~~~~~~e  470 (577)
T KOG0642|consen  393 LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP-LSVDRTSSRPAHSLASFRFGYTSIDDME  470 (577)
T ss_pred             eccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc-ceEeeccchhHhhhhhcccccccchhhh
Confidence            89999999999999999999999999999999876555 2232   23333 244443322 223333333444455555


Q ss_pred             CCceeEEecC-------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220          494 RIQPLRIMAG-------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       494 ~~~~~~~~~~-------~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~  566 (656)
                      ....+..+..       ....+.-+.++|+....+++..|+.|+++|..++..+.....|...++++++.|+|-+|++++
T Consensus       471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s  550 (577)
T KOG0642|consen  471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS  550 (577)
T ss_pred             hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeec
Confidence            5555555442       124577889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeEeeeCCC
Q 006220          567 EDGTIMMWDLASGRCVTPLMGHT  589 (656)
Q Consensus       567 ~dg~I~iwD~~~~~~~~~~~~h~  589 (656)
                      .||.+++|.+....++.....|.
T Consensus       551 ~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  551 HDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             CCceeehhhccchheeecccccc
Confidence            99999999998888877766664

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=5.1e-16  Score=169.06  Aligned_cols=195  Identities=18%  Similarity=0.243  Sum_probs=142.0

Q ss_pred             EEeecCccCEEEEEEccCCCEEEEEeCC---CeEEEEeccCCce--eEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEE
Q 006220          415 TLYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTAR  488 (656)
Q Consensus       415 ~~l~~h~~~V~~l~~spd~~~L~s~s~D---g~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~  488 (656)
                      ..+..|...+.+.+|||||+.|+.++.+   ..|++||+.++..  +..+.+|   ...++|+|+|+.|+.++ .+|.+.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~  273 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN  273 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence            3455678889999999999999887654   4799999987754  3333333   34689999999888765 678665


Q ss_pred             EE--ECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220          489 IW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       489 lw--d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~L~s  564 (656)
                      +|  |+.++. ...+..+...+....|+|+|+.|+.++ .+|...||++... .....+ ++.+  .+..|+|+|++|+.
T Consensus       274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~  349 (429)
T PRK01742        274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVM  349 (429)
T ss_pred             EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEE
Confidence            55  665554 444556667788999999999877655 5788888876532 222333 4443  46789999999998


Q ss_pred             EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      ++.++ +.+||+.+++.......+  ...+++|+|+|++|+.++.+|.+.+|++.
T Consensus       350 ~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        350 INGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             EcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            87765 666999888654322222  23567899999999999999999988864

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.71  E-value=7.1e-16  Score=147.80  Aligned_cols=245  Identities=18%  Similarity=0.294  Sum_probs=178.9

Q ss_pred             eeCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          348 INTHNGLNCASISQDG-----SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg-----~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      +.|.-+++.+-|.|+.     .+||+.  +..+|+|.+.........            ...+       ....-..+.+
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~------------~~~L-------~~~kns~~~a  151 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVEL------------QSVL-------NNNKNSEFCA  151 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceeh------------hhhh-------ccCcccccCC
Confidence            5677789999999986     356654  458999998742111000            0000       1111335678


Q ss_pred             CEEEEEEccC-CCEEEEEeCCCeEEEEeccCCce---eEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCce
Q 006220          423 PVYSASFSPL-GDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQP  497 (656)
Q Consensus       423 ~V~~l~~spd-~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~  497 (656)
                      ++++..|+.- -+++.++|-|.+..|||+.++..   ...+-.|...|.+++|...+ ..|+++|.||.++++|++....
T Consensus       152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            9999999874 46788999999999999998733   44566799999999999854 5799999999999999987655


Q ss_pred             eEEecC---CCCCeeEEEEcC-CCCEEEEEECC-CcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCC-CCEEEEEECCCc
Q 006220          498 LRIMAG---HLSDVDCVRWHI-NCNYIATGSSD-KTVRLWDVSS-GECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGT  570 (656)
Q Consensus       498 ~~~~~~---~~~~V~~v~~~p-~~~~l~tgs~d-g~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~-g~~L~s~~~dg~  570 (656)
                      ..++-.   ...+...++|++ +-+|+||-..| ..|.|.|++. +.++..+.+|.+.|+.|+|.|. +..|+++|.|..
T Consensus       232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q  311 (364)
T KOG0290|consen  232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ  311 (364)
T ss_pred             ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence            444432   235678889986 55788875554 5699999986 5678889999999999999995 568999999999


Q ss_pred             EEEEeCCCCee------eEeeeCCCccEEEEEEcC-CCCEEEEEECCCcEEE
Q 006220          571 IMMWDLASGRC------VTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKL  615 (656)
Q Consensus       571 I~iwD~~~~~~------~~~~~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~i  615 (656)
                      +.|||+...-.      +-.+ .-.+.|..+.|++ .+..++.+. ++++.|
T Consensus       312 aliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  312 ALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             EEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            99999975322      1112 2456899999996 566776665 344444

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.8e-16  Score=159.49  Aligned_cols=197  Identities=25%  Similarity=0.347  Sum_probs=159.5

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC-
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG-  503 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~-  503 (656)
                      .+++|+++|..+++|+.||++|+|+......+.....|...|.++.|+|||..+++-+.| .++||+++++.++..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            689999999999999999999999988787777778899999999999999999999999 999999999876655542 


Q ss_pred             -CCCCeeEEEEcCCC---CEEE--EEECCCcEEEEeCCCCee-----EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220          504 -HLSDVDCVRWHINC---NYIA--TGSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (656)
Q Consensus       504 -~~~~V~~v~~~p~~---~~l~--tgs~dg~V~iwd~~~~~~-----~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~  572 (656)
                       .......+.|+.++   .+.+  .....+.|+.||+....-     .+........|++++.|++|++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence             22345677887665   3332  233456777777653221     122222334699999999999999999999999


Q ss_pred             EEeCCCCeeeEeee-CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          573 MWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       573 iwD~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      |++..+.+++.-.+ .|...|+.+.|+|+.+++++.+.|..+.|..+.-..
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~  357 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK  357 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence            99999888887665 799999999999999999999999999998876543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.70  E-value=1.3e-17  Score=178.68  Aligned_cols=212  Identities=23%  Similarity=0.461  Sum_probs=173.7

Q ss_pred             eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~  492 (656)
                      .++.+.||...|||+.|...|.++++|+.|..|+||++.+..++....||.+.|++++.+.+..+++++|.|..|++|.+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--------------eeEEEEe----------c---
Q 006220          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--------------ECVRIFI----------G---  545 (656)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~--------------~~~~~~~----------~---  545 (656)
                      ..+.++..+.+|.+.|++++|+|-.    +.+.||++++||.+-.              ..+-.+.          +   
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD  337 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence            9999999999999999999999954    7788999999998711              0000000          0   


Q ss_pred             ---CCCCeEEEEEcCCC-----------CEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCC-CEEEEEECC
Q 006220          546 ---HRSMILSLAMSPDG-----------RYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG-SLLASGSAD  610 (656)
Q Consensus       546 ---h~~~i~~l~~sp~g-----------~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~sgs~D  610 (656)
                         ....+.+++|...+           .+.+++-.+..+++|++.+|..++.+.+|...++.+.++|-+ .+..+++.|
T Consensus       338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~d  417 (1113)
T KOG0644|consen  338 GEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYD  417 (1113)
T ss_pred             cccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCC
Confidence               00011122222222           234444456778999999999999999999999999999954 556789999


Q ss_pred             CcEEEEeCCCCCceeecc
Q 006220          611 CTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       611 g~I~iWd~~~~~~~~~~~  628 (656)
                      |...|||+..+.++....
T Consensus       418 gst~iwdi~eg~pik~y~  435 (1113)
T KOG0644|consen  418 GSTIIWDIWEGIPIKHYF  435 (1113)
T ss_pred             CceEeeecccCCcceeee
Confidence            999999999988876554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.70  E-value=4.6e-16  Score=159.69  Aligned_cols=185  Identities=17%  Similarity=0.271  Sum_probs=148.4

Q ss_pred             EeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 006220          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI  495 (656)
Q Consensus       416 ~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~  495 (656)
                      ....|.+.|.|-.|+|+|.-|+++++||.|++|+-. |-...++-....+|.|++|.|+.+.++.|.. +.+.+=.+...
T Consensus        99 sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n  176 (737)
T KOG1524|consen   99 SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAAN  176 (737)
T ss_pred             hhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccc
Confidence            355799999999999999999999999999999865 3333333345678999999998877666543 56777677666


Q ss_pred             ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (656)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD  575 (656)
                      ..+.....|.+-|.|+.|++.++.+++|+.|-..++||. .|..+..-..|..+|++++|.|+ ..++.++. +++++  
T Consensus       177 ~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~--  251 (737)
T KOG1524|consen  177 SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF--  251 (737)
T ss_pred             cceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeee-eeeee--
Confidence            666677889999999999999999999999999999995 56666666789999999999999 55555553 33441  


Q ss_pred             CCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW  616 (656)
Q Consensus       576 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iW  616 (656)
                               -....+.|..++||+||..++.|+..|.+.+=
T Consensus       252 ---------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  252 ---------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ---------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence                     11345789999999999999999999987653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.69  E-value=1.5e-15  Score=147.65  Aligned_cols=203  Identities=21%  Similarity=0.283  Sum_probs=171.1

Q ss_pred             CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc---eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC-CC
Q 006220          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RI  495 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~-~~  495 (656)
                      -..+|+|.+|++|...++.+.....|.||.....+   ...+++.|...|++|+|+|..+.|++|+.|+..++|... .+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            45799999999999999999999999999987544   577888999999999999999999999999999999983 32


Q ss_pred             --ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeE----EEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 006220          496 --QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV----RIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (656)
Q Consensus       496 --~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~----~~~~~h~~~i~~l~~sp~g~~L~s~~~dg  569 (656)
                        ++.-.+..+....+||.|+|+++.+|+|+..+.|.+|-....+--    .+-+.+.+.|+++.|+|++-+|++|+.|+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence              455566678899999999999999999999999999987654322    23345678899999999999999999999


Q ss_pred             cEEEEeCC------------------CCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          570 TIMMWDLA------------------SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       570 ~I~iwD~~------------------~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ..++|..-                  -|.++.++....+.|..+.|+|+|..|+-.+.|+++.+=|...+.
T Consensus       169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            99999641                  133444444456789999999999999999999999999987764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=2.3e-15  Score=140.94  Aligned_cols=200  Identities=20%  Similarity=0.353  Sum_probs=155.8

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccC----------CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEE
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd  491 (656)
                      ..|.+-+|+|.+++|+.|..+|+|.+.++..          ...+...++|.+||..++|.  ..++++|+ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            3466778999999999999999999998763          22355668999999999998  44566665 59999997


Q ss_pred             CCCCc-------------eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC
Q 006220          492 MDRIQ-------------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD  558 (656)
Q Consensus       492 ~~~~~-------------~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~  558 (656)
                      .+...             |.+.-...-..|+++-..|..+.+++++.|+.++-||+.+|+..+.++||+..|.++.--..
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            64321             11111122356899999998888888889999999999999999999999999999998555


Q ss_pred             CCEEEEEECCCcEEEEeCCCCeeeEeeeC---------CC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          559 GRYMASGDEDGTIMMWDLASGRCVTPLMG---------HT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       559 g~~L~s~~~dg~I~iwD~~~~~~~~~~~~---------h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      ...+++|++||++++||+++++++..+..         |. ..|-+++-  +..+|++|+. -.+.+|.+++.+.....
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vf  243 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVF  243 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEE
Confidence            66789999999999999999999887742         22 23555554  4557877764 47899999998876544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=5.8e-16  Score=155.84  Aligned_cols=195  Identities=25%  Similarity=0.367  Sum_probs=154.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCC
Q 006220          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (656)
Q Consensus       355 ~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~  434 (656)
                      .+++|+.+|+.|++|+.||++|||++...                            ........|.+.|.++.|+|||+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----------------------------~t~l~e~~~~~eV~DL~FS~dgk  199 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----------------------------LTILEEIAHHAEVKDLDFSPDGK  199 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc----------------------------hhhhhhHhhcCccccceeCCCCc
Confidence            78999999999999999999999997642                            12333557999999999999999


Q ss_pred             EEEEEeCCCeEEEEeccCCceeEEee--CCCccEEEEEEecCC---C--EEEEEECCCcEEEEECCCCc-----eeEEec
Q 006220          435 FILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQG---H--YFASSSHDRTARIWSMDRIQ-----PLRIMA  502 (656)
Q Consensus       435 ~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~~---~--~l~sgs~Dg~i~lwd~~~~~-----~~~~~~  502 (656)
                      +|++-+.| ..+||+++++.++....  ........+.|+.++   .  .++....-+.|+.|++...+     +.+...
T Consensus       200 ~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~  278 (398)
T KOG0771|consen  200 FLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI  278 (398)
T ss_pred             EEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh
Confidence            99999999 89999999997665544  234456678888776   3  33333455667776654221     222222


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      .....|++++.+++|++++.|+.||.|-|++..+-+++... ..|...|+.+.|+|+.+++++.+.|..+.+..+.-
T Consensus       279 ~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  279 KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            33457999999999999999999999999999988877654 47999999999999999999999999888887753

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=8e-14  Score=135.69  Aligned_cols=236  Identities=16%  Similarity=0.245  Sum_probs=168.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      ..+++|+.|...+++|..+| .+||+++..+......                          ...-.-.+.-+-|-  .
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~--------------------------~~~~G~~~veMLfR--~   58 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ--------------------------FIDGGFKIVEMLFR--S   58 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc--------------------------cccCchhhhhHhhh--h
Confidence            44599999999999996665 7999988632211100                          00000111112221  2


Q ss_pred             CEEE-EEeCC------CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC-CCceeEEecCCC
Q 006220          434 DFIL-SSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIMAGHL  505 (656)
Q Consensus       434 ~~L~-s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~-~~~~~~~~~~~~  505 (656)
                      ++|+ +|+.+      ..|.|||-....++..+. ...+|.++.+.++  .+++.- .+.|++|... +.+.++.+....
T Consensus        59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~  134 (346)
T KOG2111|consen   59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRS  134 (346)
T ss_pred             ceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeeccc
Confidence            3333 33333      479999966666666665 6779999999865  444443 5789999987 667776665332


Q ss_pred             --CCeeEEEEcCCCCEEEE-EECCCcEEEEeCCCCee--EEEEecCCCCeEEEEEcCCCCEEEEEECCCc-EEEEeCCCC
Q 006220          506 --SDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGT-IMMWDLASG  579 (656)
Q Consensus       506 --~~V~~v~~~p~~~~l~t-gs~dg~V~iwd~~~~~~--~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~-I~iwD~~~~  579 (656)
                        ..+.+++-+.+..+||. |-.-|.|+|-|+...+.  ...+.+|.+.|.|++.+-+|..+||++..|+ |+|||..+|
T Consensus       135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g  214 (346)
T KOG2111|consen  135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG  214 (346)
T ss_pred             CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC
Confidence              33444433334455555 45679999999986655  4778899999999999999999999999886 899999999


Q ss_pred             eeeEeeeCC--CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          580 RCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       580 ~~~~~~~~h--~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      +.+.+++..  ...|++++|||++.+|+++|.-|+|.|+.+....
T Consensus       215 ~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  215 TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            999998742  3689999999999999999999999999998754

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.66  E-value=1.9e-16  Score=160.29  Aligned_cols=231  Identities=20%  Similarity=0.258  Sum_probs=194.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  432 (656)
                      +-..+.++.+|++|+.|+..|.|-.+|+.+....                             ....-...|.++.|-.+
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~-----------------------------~Ei~v~Etv~Dv~~LHn  181 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH-----------------------------FEINVMETVRDVTFLHN  181 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceee-----------------------------eeeehhhhhhhhhhhcc
Confidence            4567889999999999999999999998763221                             11122356888999888


Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEE
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~  512 (656)
                      .++++++- ...+.|||-. |..+++++.|. .|..+.|-|..-+|++++..|.++--|+.+++.+..+....+.+..++
T Consensus       182 eq~~AVAQ-K~y~yvYD~~-GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~  258 (545)
T KOG1272|consen  182 EQFFAVAQ-KKYVYVYDNN-GTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMK  258 (545)
T ss_pred             hHHHHhhh-hceEEEecCC-CcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhh
Confidence            77777765 4689999976 88889988655 689999999998999999999999999999999999988888999999


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccE
Q 006220          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV  592 (656)
Q Consensus       513 ~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V  592 (656)
                      -+|-...+-+|...|+|.+|.....+++..+..|.++|.+|++.++|+|++|.|.|..++|||++....+.++.. ..+.
T Consensus       259 qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a  337 (545)
T KOG1272|consen  259 QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPA  337 (545)
T ss_pred             cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCc
Confidence            999888999999999999999999999888889999999999999999999999999999999998887766654 3456


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          593 WTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       593 ~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      ..+++|..|  ++++|....|.||.=
T Consensus       338 ~~ls~Sqkg--lLA~~~G~~v~iw~d  361 (545)
T KOG1272|consen  338 SNLSLSQKG--LLALSYGDHVQIWKD  361 (545)
T ss_pred             ccccccccc--ceeeecCCeeeeehh
Confidence            788888765  333444557999963

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=1.6e-14  Score=158.79  Aligned_cols=244  Identities=20%  Similarity=0.292  Sum_probs=177.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc-
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-  431 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-  431 (656)
                      .-..+.|+|=...++++...-.|+|||.........                         +..-......|+.+.+-. 
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~-------------------------F~n~~~~~t~Vs~l~liNe 1120 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNG-------------------------FDNGAFPDTRVSDLELINE 1120 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceecc-------------------------ccCCCCCCCccceeeeecc
Confidence            466788999888999998788999999986322110                         000002335678888765 


Q ss_pred             -CCCEEEEEeCCCeEEEEeccC-----CceeEEeeC-------CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220          432 -LGDFILSSSADTTIRLWSTKL-----NANLVCYKG-------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       432 -d~~~L~s~s~Dg~I~lwd~~~-----~~~~~~~~~-------h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                       |..++++|+.||.|+||+--.     .+.+..+.+       ..+.-.-+.|.....+++++|.-+.|+|||......+
T Consensus      1121 ~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred             cchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeE
Confidence             345899999999999997421     122222211       1111234678887777777777899999999988777


Q ss_pred             EEec-CCCCCeeEEEEc-CCCCEEEEEECCCcEEEEeCCCCe---eEEEEecCCCC--eEEEEEcCCCC-EEEEEECCCc
Q 006220          499 RIMA-GHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGE---CVRIFIGHRSM--ILSLAMSPDGR-YMASGDEDGT  570 (656)
Q Consensus       499 ~~~~-~~~~~V~~v~~~-p~~~~l~tgs~dg~V~iwd~~~~~---~~~~~~~h~~~--i~~l~~sp~g~-~L~s~~~dg~  570 (656)
                      ..+. +....|+++.-+ +.|+.+++|..||.||+||.+...   .+...+.|...  |..+.+.+.|- .|++|+.||.
T Consensus      1201 ~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred             eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence            7665 444557776554 467999999999999999998643   46777888887  99999999775 5999999999


Q ss_pred             EEEEeCCCCeeeE--eeeCCC--c-cEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          571 IMMWDLASGRCVT--PLMGHT--S-CVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       571 I~iwD~~~~~~~~--~~~~h~--~-~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      |++||++......  .+..|.  + .++++..+++..++|+|+. +.|+||++....
T Consensus      1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred             EEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence            9999998742222  222333  3 5899999999999999998 999999997644

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=4.4e-15  Score=163.18  Aligned_cols=251  Identities=17%  Similarity=0.245  Sum_probs=180.4

Q ss_pred             CCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCC--cccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          352 NGLNCASISQ--DGSLVAGGFSDSSLKVWDMAKLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       352 ~~V~~l~fs~--dg~~La~g~~dg~I~Iwdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      ..|+.+.+-.  |..++.+|+.||.|+||+-....  ........                  ........+-.+.=.-+
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw------------------~~Ls~~~~~~r~~~~v~ 1171 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAW------------------SSLSDQLPGARGTGLVV 1171 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEee------------------ccccccCccCCCCCeee
Confidence            4588888753  57789999999999999854321  00000000                  00000011111222456


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC-CCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCc---eeEEec
Q 006220          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ---PLRIMA  502 (656)
Q Consensus       428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~---~~~~~~  502 (656)
                      .|.....+|++++.-..|+|||.....++..+.. ....|+++.-+. .|+.++.|..||.+++||.+...   .+...+
T Consensus      1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred             ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence            8888777888888788999999997777666543 344566554433 57999999999999999987543   466777


Q ss_pred             CCCCC--eeEEEEcCCCCE-EEEEECCCcEEEEeCCCCeeEE--EEecCC--C-CeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          503 GHLSD--VDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVR--IFIGHR--S-MILSLAMSPDGRYMASGDEDGTIMMW  574 (656)
Q Consensus       503 ~~~~~--V~~v~~~p~~~~-l~tgs~dg~V~iwd~~~~~~~~--~~~~h~--~-~i~~l~~sp~g~~L~s~~~dg~I~iw  574 (656)
                      .|...  |..+.+.++|-- |++|+.+|.|++||++......  ....|.  + ..+++..+++...+|+|+. +.|.||
T Consensus      1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred             ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence            88877  999999987754 9999999999999999853222  222332  3 5999999999999999998 999999


Q ss_pred             eCCCCeeeEeeeCC-------CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          575 DLASGRCVTPLMGH-------TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       575 D~~~~~~~~~~~~h-------~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ++ .|+.+..++.+       .+.+.|++|+|..-++|+|+.|.+|.||....+.
T Consensus      1331 ~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1331 SL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            98 45555544322       2578999999999999999999999999986643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=8.3e-16  Score=158.24  Aligned_cols=213  Identities=27%  Similarity=0.475  Sum_probs=164.1

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+.+|.+.|+|++|+.||.+|++|+.|-.+.|||....                           +.....-.||.+.|.
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---------------------------KllhsI~TgHtaNIF   97 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---------------------------KLLHSISTGHTANIF   97 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhc---------------------------ceeeeeeccccccee
Confidence            36789999999999999999999999999999997631                           234455679999999


Q ss_pred             EEEEcc--CCCEEEEEeCCCeEEEEeccC----------CceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEEC
Q 006220          426 SASFSP--LGDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSM  492 (656)
Q Consensus       426 ~l~~sp--d~~~L~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~  492 (656)
                      |+.|-|  .++.+++|+.|..|+++|+..          ......+..|...|..++-.|++ +.|.+++.||+|+-+|+
T Consensus        98 svKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDi  177 (758)
T KOG1310|consen   98 SVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDI  177 (758)
T ss_pred             EEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecc
Confidence            999998  456899999999999999984          23356677899999999999988 88999999999999999


Q ss_pred             CCCcee----------EEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCC--------C----------eeEEEE
Q 006220          493 DRIQPL----------RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS--------G----------ECVRIF  543 (656)
Q Consensus       493 ~~~~~~----------~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~--------~----------~~~~~~  543 (656)
                      +....-          ..+.+..-...|+..+| +..+|++|+.|-..++||.+.        +          .|++-|
T Consensus       178 REph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf  257 (758)
T KOG1310|consen  178 REPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYF  257 (758)
T ss_pred             cCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhee
Confidence            863211          11112223467899998 456889999999999999531        1          133333


Q ss_pred             e-cCC-----------CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220          544 I-GHR-----------SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       544 ~-~h~-----------~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      . +|.           ..++-++|+|+|.-|+..-..-.|+++|+..++....+
T Consensus       258 ~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  258 SPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             cCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            2 221           12566889999987777666668999999888766554

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.66  E-value=1.3e-14  Score=157.81  Aligned_cols=205  Identities=17%  Similarity=0.223  Sum_probs=156.4

Q ss_pred             CccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCCce--eE----EeeCCCccEEEEEEecCCCE--EEEEECCCcEEEE
Q 006220          420 HSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNAN--LV----CYKGHNYPVWDVQFNPQGHY--FASSSHDRTARIW  490 (656)
Q Consensus       420 h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~--~~----~~~~h~~~V~~l~~sp~~~~--l~sgs~Dg~i~lw  490 (656)
                      -..+|.|+.|+|.. .+++.|+.+|+|.+||++.+..  ..    ....|..+++.+.|..+..-  |++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            45789999999965 4677888999999999987655  22    22358899999999875544  9999999999999


Q ss_pred             ECCCCce-eE-----Eec------CCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC---e-----eEEEEecCCCC
Q 006220          491 SMDRIQP-LR-----IMA------GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG---E-----CVRIFIGHRSM  549 (656)
Q Consensus       491 d~~~~~~-~~-----~~~------~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~---~-----~~~~~~~h~~~  549 (656)
                      +++.... ..     ...      .....+++++|.+ +.+.+++|+.+|.|.--+....   .     .+..+..|.++
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            9875332 11     111      1234588999997 5567899999999988443322   1     23356678899


Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeeeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCce
Q 006220          550 ILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       550 i~~l~~sp~g~~L~s~~~dg~I~iwD~~-~~~~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      |+++.++|=+..++..+.|.+++||... ...++..+..+...|++++|||- ...++++..||.|.|||+......
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~  477 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE  477 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC
Confidence            9999999977655554459999999988 66777777788888999999995 467888889999999999775543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.9e-15  Score=146.73  Aligned_cols=194  Identities=21%  Similarity=0.315  Sum_probs=157.3

Q ss_pred             CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEEEEECCCCcee--EEecCCC-CCe
Q 006220          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPL--RIMAGHL-SDV  508 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lwd~~~~~~~--~~~~~~~-~~V  508 (656)
                      ..++++...|+|++||..+++.+..++++...+..+.|..  ..+.+.+|+.||+|++||++.....  ..+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4578888899999999999999999999999999999987  5778999999999999999875443  3444554 466


Q ss_pred             eEEEEcCCCCEEEEEE----CCCcEEEEeCCCCee-EEEE-ecCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCe-
Q 006220          509 DCVRWHINCNYIATGS----SDKTVRLWDVSSGEC-VRIF-IGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGR-  580 (656)
Q Consensus       509 ~~v~~~p~~~~l~tgs----~dg~V~iwd~~~~~~-~~~~-~~h~~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~-  580 (656)
                      .|++.+-+++.+++|+    .+-.|.+||+|..+. ++.+ ..|...|+++.|+|. .++|++|+.||.|.+||+.... 
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            7777777888999886    467899999998766 5544 579999999999995 5799999999999999996542 


Q ss_pred             --eeEeeeCCCccEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCCceeec
Q 006220          581 --CVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       581 --~~~~~~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                        .+.....|...|.++.|..++ +.|.+-+..++..+|++..+......
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence              222233567789999998876 45888889999999999988755443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=3e-14  Score=140.47  Aligned_cols=270  Identities=19%  Similarity=0.246  Sum_probs=183.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  432 (656)
                      .+.-++|++.-..+|++..|-.|+||+-... .                           ....-......|+|++|-|.
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst-~---------------------------pt~Lks~sQrnvtclawRPl  151 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST-C---------------------------PTKLKSVSQRNVTCLAWRPL  151 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCC-C---------------------------CceecchhhcceeEEEeccC
Confidence            4677899998778899999999999996531 0                           11111223467999999997


Q ss_pred             CC-EEEEEeCCCeEEEEeccCCc--------------eeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCc
Q 006220          433 GD-FILSSSADTTIRLWSTKLNA--------------NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQ  496 (656)
Q Consensus       433 ~~-~L~s~s~Dg~I~lwd~~~~~--------------~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~  496 (656)
                      +. .|+.|+.. -|.+|..+...              .+...++| .+|++++|.+||..+++++ .|..|.+||.+++.
T Consensus       152 saselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~  229 (445)
T KOG2139|consen  152 SASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ  229 (445)
T ss_pred             Ccceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence            64 56666665 59999865211              12334556 6899999999999999998 56789999999988


Q ss_pred             eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC-CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV-SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~-~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD  575 (656)
                      .+.......+.++-+.|+|++.+|++++-|+..++|+. ++..+.+-.. -.+.|...+|+|+|++|.-+.. |.-++|.
T Consensus       230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lys  307 (445)
T KOG2139|consen  230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYS  307 (445)
T ss_pred             cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEE
Confidence            77766556678999999999999999999999999954 4444444443 3458999999999997665443 3344554


Q ss_pred             CCCC---------------eeeEee------eC---CCccEEEEEEcCCCCEEEEEECCC--------cEEEEeCCCCCc
Q 006220          576 LASG---------------RCVTPL------MG---HTSCVWTLAYSCEGSLLASGSADC--------TVKLWDVTTSTK  623 (656)
Q Consensus       576 ~~~~---------------~~~~~~------~~---h~~~V~~l~~s~~~~~l~sgs~Dg--------~I~iWd~~~~~~  623 (656)
                      +...               ..+..+      .+   -.+.+.+++|.|.|.+||+.-..+        .|.+||......
T Consensus       308 l~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~  387 (445)
T KOG2139|consen  308 LTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP  387 (445)
T ss_pred             EeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence            4210               011111      11   136788999999999999876443        377788766544


Q ss_pred             eeecc--cccCCccccccccccC-CCCCeEEEEEc
Q 006220          624 VLKTE--EKSGTNRLRSLKTLPT-KSTPVYSLQVL  655 (656)
Q Consensus       624 ~~~~~--~~~~~~~~~~l~~~p~-~~~pv~sv~Ft  655 (656)
                      ..-..  ...+. .+..+.+.|. +..++.+|.++
T Consensus       388 vels~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWs  421 (445)
T KOG2139|consen  388 VELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWS  421 (445)
T ss_pred             eEEEecccccCC-CCceEEeeecccCCcEEEEEec
Confidence            33221  11111 1334444333 45667777765

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.4e-15  Score=156.48  Aligned_cols=213  Identities=23%  Similarity=0.365  Sum_probs=166.0

Q ss_pred             EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe-eCCCccEEEEEEec--CCCEEEEEECCCcEEEEE
Q 006220          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPVWDVQFNP--QGHYFASSSHDRTARIWS  491 (656)
Q Consensus       415 ~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lwd  491 (656)
                      ..+.||+|.|.|+.|+.+|.+|++||.|-.+.|||.-..+.+..+ .+|...|.++.|-|  +...+++|+.|..|+++|
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            457899999999999999999999999999999999877777665 57999999999999  567899999999999999


Q ss_pred             CCC----------CceeEEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEE----------EEecCCCCe
Q 006220          492 MDR----------IQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVR----------IFIGHRSMI  550 (656)
Q Consensus       492 ~~~----------~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~----------~~~~h~~~i  550 (656)
                      +..          ..+.+.+..|...|..++-.|++ +.+.+++.||+|+-+|++......          .+...--..
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel  203 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL  203 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence            984          34566777899999999999988 889999999999999998632111          111122346


Q ss_pred             EEEEEcCC-CCEEEEEECCCcEEEEeCCC--------C----------eeeEeee-CCC-----------ccEEEEEEcC
Q 006220          551 LSLAMSPD-GRYMASGDEDGTIMMWDLAS--------G----------RCVTPLM-GHT-----------SCVWTLAYSC  599 (656)
Q Consensus       551 ~~l~~sp~-g~~L~s~~~dg~I~iwD~~~--------~----------~~~~~~~-~h~-----------~~V~~l~~s~  599 (656)
                      .|+.++|. ..+|++|+.|-..++||.+.        +          .++..+. +|-           ..++-+.|+|
T Consensus       204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp  283 (758)
T KOG1310|consen  204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP  283 (758)
T ss_pred             eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence            78999995 46899999999999999431        1          1222221 221           1256788999


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          600 EGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       600 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      +|.-|...-....|+++|+...+.....
T Consensus       284 NGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  284 NGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             CCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            9986666555568999999987765543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.65  E-value=5.2e-15  Score=152.41  Aligned_cols=193  Identities=21%  Similarity=0.332  Sum_probs=152.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeEEee----CCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCC----------
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLVCYK----GHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI----------  495 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~----~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~----------  495 (656)
                      |.+--|+.|-.-|.|.+.|....+....+.    -....|+|+.|-| +...|+++-.+|.+++||....          
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            455567888888899998876532221111    1246799999999 4556777889999999976310          


Q ss_pred             ------------------ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcC
Q 006220          496 ------------------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP  557 (656)
Q Consensus       496 ------------------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp  557 (656)
                                        .|+..+.--.+.|+.++|+|+|++||+.+.||.+||||..+.+.+..++..-+...|++|||
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP  342 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP  342 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence                              12222222335788999999999999999999999999999888877777778899999999


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcC-----------------------------------CC-
Q 006220          558 DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC-----------------------------------EG-  601 (656)
Q Consensus       558 ~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~-----------------------------------~~-  601 (656)
                      ||+||++|++|.-|.||.+..++.+..-++|.+.|..++|.|                                   ++ 
T Consensus       343 DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~  422 (636)
T KOG2394|consen  343 DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGC  422 (636)
T ss_pred             CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCC
Confidence            999999999999999999999999999999999999999983                                   01 


Q ss_pred             ------------CEEEEEECCCcEEEEeCCCCCc
Q 006220          602 ------------SLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       602 ------------~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                                  -.+.+.+.|-.+.+||+.....
T Consensus       423 ~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  423 PLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             cccccccccceEEEeecccccceEEEEecchhhc
Confidence                        1577888999999999976443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.65  E-value=6.3e-15  Score=154.62  Aligned_cols=247  Identities=20%  Similarity=0.339  Sum_probs=176.3

Q ss_pred             HHHhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc--CCCCCCCCCCc
Q 006220          325 LEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG--LQGENDTTPRE  402 (656)
Q Consensus       325 ~~~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~--~~~~~~~~~~~  402 (656)
                      +....+|+.+++.+-.+ .+.++.+|.+.|+|++||.||+.+|+|+.|..|.||+-.-.+....+..  .+.- ...+..
T Consensus        28 ~lAAg~rlliyD~ndG~-llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCM-sFNP~~  105 (1081)
T KOG1538|consen   28 ILAAGSRLLVYDTSDGT-LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCM-SFNPIT  105 (1081)
T ss_pred             EEecCCEEEEEeCCCcc-cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEe-ecCchH
Confidence            33445677777665443 3568899999999999999999999999999999998654332221110  0000 000000


Q ss_pred             cc--------cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee---CCCccEEEEEE
Q 006220          403 DI--------IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQF  471 (656)
Q Consensus       403 ~~--------~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~  471 (656)
                      ..        ++.-........-...+..|.+++|..||++|+.|-.+|+|.+-+-. ++....+.   |.+++||+++|
T Consensus       106 h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~  184 (1081)
T KOG1538|consen  106 HQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICW  184 (1081)
T ss_pred             HHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEe
Confidence            00        00000000011111234678899999999999999999999998655 44333332   47889999999


Q ss_pred             ecC-----CCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC
Q 006220          472 NPQ-----GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH  546 (656)
Q Consensus       472 sp~-----~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h  546 (656)
                      +|.     ...+++..+..++.++.+.. +.+..-..-.-...|+.+.+||.|++.|+.|+.+.+|- +.|-.+.+....
T Consensus       185 ~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~  262 (1081)
T KOG1538|consen  185 NPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ  262 (1081)
T ss_pred             cCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc
Confidence            995     35688888999999998764 33332233334567999999999999999999999996 667777777777


Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       547 ~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      ..+|..++..|++++++.|+.||+|..|++
T Consensus       263 D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  263 DSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            889999999999999999999999999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.63  E-value=4.6e-16  Score=157.60  Aligned_cols=201  Identities=17%  Similarity=0.233  Sum_probs=178.0

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~  502 (656)
                      .-+.+.++.+|++++.|+..|.|-.+|+.++.....+. -...|.++.|-.+..+||++ ....++|||-. +..+..+.
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHClk  207 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCLK  207 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeehh
Confidence            34789999999999999999999999999988777665 35578999999888777776 55789999965 45566666


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      .| ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+..-.+.+..|+-+|-+..+-+|...|+|.+|.-.+..++
T Consensus       208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL  286 (545)
T KOG1272|consen  208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL  286 (545)
T ss_pred             hc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence            55 67999999999999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       583 ~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      ..+..|.++|.++++.++|.+++|.|.|..|+|||++.-......
T Consensus       287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             HHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence            999999999999999999999999999999999999987655443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=3e-15  Score=152.61  Aligned_cols=279  Identities=22%  Similarity=0.358  Sum_probs=204.2

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCC----CC----------------CCcccc
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----TT----------------PREDII  405 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~----~~----------------~~~~~~  405 (656)
                      .+..|.+.|+.+.|+..|..|++|+.|..|.+||+............-..+.    ..                .....+
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            5678899999999999999999999999999999986543322111000000    00                000111


Q ss_pred             CCCCCceeeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeE---EeeCCCc---cEEEEEEecCC-CE
Q 006220          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLV---CYKGHNY---PVWDVQFNPQG-HY  477 (656)
Q Consensus       406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~---~~~~h~~---~V~~l~~sp~~-~~  477 (656)
                      ...+.......+..|.++|.-++.-|+.. -|++++.|+.+.-+|++.+....   +-..+..   ....++..|.. +.
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~  296 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE  296 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence            11222233455778999999999999876 58899999999999998765432   2222333   46788888854 48


Q ss_pred             EEEEECCCcEEEEECCCCce------eEEec------CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC--C------
Q 006220          478 FASSSHDRTARIWSMDRIQP------LRIMA------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--G------  537 (656)
Q Consensus       478 l~sgs~Dg~i~lwd~~~~~~------~~~~~------~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~--~------  537 (656)
                      |++|+.|..+++||.+....      +..+.      ...-.|+|++|+.++.-|.++-.|-.|+++.-.-  |      
T Consensus       297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~  376 (559)
T KOG1334|consen  297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS  376 (559)
T ss_pred             cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence            99999999999999875322      22222      2234589999998888888888899999995432  2      


Q ss_pred             ----eeE-EEEecCCC--CeEEEE-EcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC
Q 006220          538 ----ECV-RIFIGHRS--MILSLA-MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA  609 (656)
Q Consensus       538 ----~~~-~~~~~h~~--~i~~l~-~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~  609 (656)
                          ..+ +.++||..  .|..+- |-|...|+++|+.-|.|.||+-.+++.+.-+.+...-|+||.-+|.-.+||++|-
T Consensus       377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGi  456 (559)
T KOG1334|consen  377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGI  456 (559)
T ss_pred             cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCC
Confidence                222 23788875  355565 4678899999999999999999999999999887779999999999999999999


Q ss_pred             CCcEEEEeCCCCCce
Q 006220          610 DCTVKLWDVTTSTKV  624 (656)
Q Consensus       610 Dg~I~iWd~~~~~~~  624 (656)
                      |..|+||--.+.+..
T Consensus       457 d~DVKIWTP~~~er~  471 (559)
T KOG1334|consen  457 DHDVKIWTPLTAERA  471 (559)
T ss_pred             ccceeeecCCccccc
Confidence            999999987555443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.62  E-value=1.1e-13  Score=154.81  Aligned_cols=262  Identities=18%  Similarity=0.254  Sum_probs=186.1

Q ss_pred             eeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC
Q 006220          342 VSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (656)
Q Consensus       342 ~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  420 (656)
                      +..-.++.|...|..++.++. +.++++|+.||+|+||++......                     .+..+...++..-
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---------------------~~s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---------------------GGSARSELTYSPE 1097 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---------------------cceeeeeEEEecc
Confidence            334567788888889888765 599999999999999998752111                     1112333444446


Q ss_pred             ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC--ce-----eEEeeCC-CccEEEE-EEec-CC-CEEEEEECCCcEEE
Q 006220          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLN--AN-----LVCYKGH-NYPVWDV-QFNP-QG-HYFASSSHDRTARI  489 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~--~~-----~~~~~~h-~~~V~~l-~~sp-~~-~~l~sgs~Dg~i~l  489 (656)
                      .+++.++...+.+..++.++.||.|++.+++..  ..     ......+ .+.+.++ +|.. .+ ..++.+..-+.|..
T Consensus      1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred             CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEE
Confidence            788999999999999999999999999998752  11     1111112 2223332 3332 23 36888888899999


Q ss_pred             EECCCCceeEEec--CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcCCC---CEEE
Q 006220          490 WSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDG---RYMA  563 (656)
Q Consensus       490 wd~~~~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~g---~~L~  563 (656)
                      ||++.......+.  ...+.|++++.+|.++++++|+..|.+.+||+|=+.++..+. ++..+|..+..+|-.   .+.+
T Consensus      1178 ~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred             ecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEE
Confidence            9998765544333  344789999999999999999999999999999888887664 345788888877732   4555


Q ss_pred             EEE--CCCcEEEEeCCCCeeeEeeeCC-------------------CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          564 SGD--EDGTIMMWDLASGRCVTPLMGH-------------------TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       564 s~~--~dg~I~iwD~~~~~~~~~~~~h-------------------~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      +++  ..+.|.+|++.+|.+-..+...                   .-......+...+..+.+|+.|+.|+.||.....
T Consensus      1258 s~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             EecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence            544  5788999999988766555322                   1112223344456689999999999999998766


Q ss_pred             ce
Q 006220          623 KV  624 (656)
Q Consensus       623 ~~  624 (656)
                      ..
T Consensus      1338 ~s 1339 (1431)
T KOG1240|consen 1338 IS 1339 (1431)
T ss_pred             cc
Confidence            54

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=1.6e-13  Score=149.29  Aligned_cols=220  Identities=15%  Similarity=0.109  Sum_probs=153.0

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~---dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      +..+...+.+.+|||||+.||..+.   +..|.+|++.+...                          ....   ...+.
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--------------------------~~l~---~~~~~  244 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------------------------RQVA---SFPRH  244 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--------------------------EEcc---CCCCC
Confidence            3445567999999999999987542   35688888764211                          1111   12233


Q ss_pred             EEEEEEccCCCEEEEE-eCCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC-Cc--EEEEECCCCce
Q 006220          424 VYSASFSPLGDFILSS-SADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-RT--ARIWSMDRIQP  497 (656)
Q Consensus       424 V~~l~~spd~~~L~s~-s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D-g~--i~lwd~~~~~~  497 (656)
                      +..+.|+|||+.|+.. +.+|  .|.+||+.++..... ..+...+....|+|+|+.|+.++.+ +.  |+++|+.++..
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            4467999999988754 4444  588999987765443 3344567889999999998877754 44  55557766654


Q ss_pred             eEEecCCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCc---E
Q 006220          498 LRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT---I  571 (656)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~---I  571 (656)
                      .+ +..+.....+..|+|+|++|+..+.+   ..|.+||+.++.... +... .......|+|||++|+.++.++.   +
T Consensus       324 ~~-lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l  400 (429)
T PRK03629        324 QR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL  400 (429)
T ss_pred             EE-eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence            33 33344456678999999999876643   358899998886543 3322 23446789999999999887764   6


Q ss_pred             EEEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220          572 MMWDLASGRCVTPLMGHTSCVWTLAYSCE  600 (656)
Q Consensus       572 ~iwD~~~~~~~~~~~~h~~~V~~l~~s~~  600 (656)
                      .++++ +|.....+.+|.+.+...+|+|-
T Consensus       401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        401 NLVST-DGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             EEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence            77777 56667778888888999999873

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.61  E-value=4.5e-13  Score=141.11  Aligned_cols=228  Identities=14%  Similarity=0.221  Sum_probs=153.3

Q ss_pred             EEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe-CCCeE
Q 006220          367 AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS-ADTTI  445 (656)
Q Consensus       367 a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s-~Dg~I  445 (656)
                      ++...++.|++|++...+.                         ......+ .+.+....++++|++++|++++ .++.|
T Consensus         6 ~~~~~~~~I~~~~~~~~g~-------------------------l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i   59 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGA-------------------------LTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRV   59 (330)
T ss_pred             EEcCCCCCEEEEEECCCCc-------------------------eeeeeEE-ecCCCCccEEECCCCCEEEEEECCCCcE
Confidence            3445789999999863111                         1122222 2335567889999999887664 57889


Q ss_pred             EEEeccC-Cce--eEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCC----ceeEEecCCCCCeeEEEEcCCC
Q 006220          446 RLWSTKL-NAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRI----QPLRIMAGHLSDVDCVRWHINC  517 (656)
Q Consensus       446 ~lwd~~~-~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~----~~~~~~~~~~~~V~~v~~~p~~  517 (656)
                      .+|+++. +..  +.... .......++|+|+++++++++ .++.+.+|++++.    ..+..+. +.....+++++|++
T Consensus        60 ~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g  137 (330)
T PRK11028         60 LSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN  137 (330)
T ss_pred             EEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC
Confidence            9999973 322  12222 233456899999999988887 4889999999742    2233332 23456788999999


Q ss_pred             CEEEEEE-CCCcEEEEeCCCCeeEE-----EEe-cCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCC--C--eeeEee
Q 006220          518 NYIATGS-SDKTVRLWDVSSGECVR-----IFI-GHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLAS--G--RCVTPL  585 (656)
Q Consensus       518 ~~l~tgs-~dg~V~iwd~~~~~~~~-----~~~-~h~~~i~~l~~sp~g~~L~s~~~-dg~I~iwD~~~--~--~~~~~~  585 (656)
                      +++++++ .++.|.+||+.+...+.     ... ........++|+|+|++++++.. ++.|.+||+..  +  +.+..+
T Consensus       138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~  217 (330)
T PRK11028        138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL  217 (330)
T ss_pred             CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence            9987655 56899999997633221     011 11234568999999999988876 89999999973  3  233333


Q ss_pred             eCC------CccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCC
Q 006220          586 MGH------TSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTST  622 (656)
Q Consensus       586 ~~h------~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~~~  622 (656)
                      ..+      ......+.++|++++++++. .++.|.+|++....
T Consensus       218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~  261 (330)
T PRK11028        218 DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG  261 (330)
T ss_pred             ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence            221      11233688999999998885 47899999996543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.61  E-value=9.2e-15  Score=150.28  Aligned_cols=183  Identities=17%  Similarity=0.247  Sum_probs=150.3

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      -.|.+.|.|-.|+|||.-|++.+.||.|++|+-...                             ...++.....+|+|+
T Consensus       101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-----------------------------LRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen  101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-----------------------------LRSTVVQNEESIRCA  151 (737)
T ss_pred             hhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-----------------------------HHHHHhhcCceeEEE
Confidence            456778999999999999999999999999996531                             112233456789999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCC
Q 006220          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (656)
Q Consensus       428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~  507 (656)
                      +|.|+++.++.|.. +.+.+=.+.....+...+.|.+-|.++.|++..+.+++|+.|-..++||-. +.++..-..|.-+
T Consensus       152 ~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~  229 (737)
T KOG1524|consen  152 RWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA  229 (737)
T ss_pred             EECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence            99999988777655 468888888788888899999999999999999999999999999999965 4567777789999


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (656)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw  574 (656)
                      |++++|+|+ ..++.||. +++|+           -....+.|..++||+||..+++|+..|.+.+=
T Consensus       230 ITSva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  230 ITSVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             eeeeeeccc-cceeeeee-eeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            999999999 66666654 34542           22345789999999999999999999887653

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=2.1e-13  Score=148.70  Aligned_cols=236  Identities=23%  Similarity=0.363  Sum_probs=177.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCC
Q 006220          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (656)
Q Consensus       355 ~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~  434 (656)
                      ....||+|+++++.. .+..|+||...+                            +...+.+.+|..++.++.+.|...
T Consensus        20 ~~avfSnD~k~l~~~-~~~~V~VyS~~T----------------------------g~~i~~l~~~~a~l~s~~~~~~~~   70 (792)
T KOG1963|consen   20 SPAVFSNDAKFLFLC-TGNFVKVYSTAT----------------------------GECITSLEDHTAPLTSVIVLPSSE   70 (792)
T ss_pred             cccccccCCcEEEEe-eCCEEEEEecch----------------------------HhhhhhcccccCccceeeecCCCc
Confidence            345699999999877 567899999876                            334557889999999999988654


Q ss_pred             ---EEEEEeCCCeEEEEeccCCceeEEeeCCCccE---------------------------------------------
Q 006220          435 ---FILSSSADTTIRLWSTKLNANLVCYKGHNYPV---------------------------------------------  466 (656)
Q Consensus       435 ---~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V---------------------------------------------  466 (656)
                         ++++++.||+|++||...+..+.++..+. ++                                             
T Consensus        71 ~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~  149 (792)
T KOG1963|consen   71 NANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATF  149 (792)
T ss_pred             cceEEEEEecCccEEEecCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeec
Confidence               67899999999999988766655443211 11                                             


Q ss_pred             --------------EEEEEecCCCEEEEEECCCcEEEEECCCCceeE----EecCCCCCeeEEEEcCCCCEEEEEECCCc
Q 006220          467 --------------WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR----IMAGHLSDVDCVRWHINCNYIATGSSDKT  528 (656)
Q Consensus       467 --------------~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~----~~~~~~~~V~~v~~~p~~~~l~tgs~dg~  528 (656)
                                    .++.+++.|.+... ..+..+.+|.........    .-..|.-.++|+++||+++++++|..||.
T Consensus       150 ~~~~~d~~~~~~~~~~I~~~~~ge~~~i-~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr  228 (792)
T KOG1963|consen  150 DSAKGDFLKEHQEPKSIVDNNSGEFKGI-VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR  228 (792)
T ss_pred             cccchhhhhhhcCCccEEEcCCceEEEE-EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc
Confidence                          12333333333222 234556777766533111    11146666899999999999999999999


Q ss_pred             EEEEeCCC----CeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEE
Q 006220          529 VRLWDVSS----GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL  604 (656)
Q Consensus       529 V~iwd~~~----~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  604 (656)
                      |.+|.--.    ......+.-|...|++++|+++|.+|++||..|.+.+|.+.+++ -+-+..-.++|..+.+|||+.+.
T Consensus       229 I~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~  307 (792)
T KOG1963|consen  229 ILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLY  307 (792)
T ss_pred             EEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeE
Confidence            99996432    12345677899999999999999999999999999999999988 33344556899999999999999


Q ss_pred             EEEECCCcEEEEeCCCCC
Q 006220          605 ASGSADCTVKLWDVTTST  622 (656)
Q Consensus       605 ~sgs~Dg~I~iWd~~~~~  622 (656)
                      +....|+.|.+-...+..
T Consensus       308 sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  308 SLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             EEEecCceEEEEeccchh
Confidence            999999999999885543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=7.4e-13  Score=144.05  Aligned_cols=199  Identities=17%  Similarity=0.156  Sum_probs=140.3

Q ss_pred             eecCccCEEEEEEccCCCEEEEEe---CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE-ECCC--cEEEE
Q 006220          417 YQGHSGPVYSASFSPLGDFILSSS---ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDR--TARIW  490 (656)
Q Consensus       417 l~~h~~~V~~l~~spd~~~L~s~s---~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~Dg--~i~lw  490 (656)
                      +..+...+.+.+|||||+.|+..+   .+..|.+|++.+++.... ......+....|+|+|..++.. +.+|  .|++|
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~  272 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  272 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence            345667899999999999888654   345799999987754332 2223334568999999988765 4444  58899


Q ss_pred             ECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      |+++++..+... +...+....|+|+|+.|+.++.+ +  .|+++|+.++...+ +..+.....+..|+|||++|+..+.
T Consensus       273 d~~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~SpDG~~Ia~~~~  350 (429)
T PRK03629        273 DLASGQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSS  350 (429)
T ss_pred             ECCCCCEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEEc
Confidence            998876655443 44567889999999999877654 4  45555777665543 3444455677899999999887654


Q ss_pred             C---CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCc---EEEEeCCC
Q 006220          568 D---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT---VKLWDVTT  620 (656)
Q Consensus       568 d---g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~---I~iWd~~~  620 (656)
                      +   ..|.+||+.++... .+... ....+..|+|||++|+.++.++.   +.+|++..
T Consensus       351 ~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        351 NGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             cCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            3   35889999887643 33321 22346789999999999998865   66777744

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=1.1e-13  Score=138.15  Aligned_cols=207  Identities=17%  Similarity=0.251  Sum_probs=166.1

Q ss_pred             eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc----eeEEeeCCCccEEEEEEecCC-CEEEEEECC--CcEEE
Q 006220          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQG-HYFASSSHD--RTARI  489 (656)
Q Consensus       417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~D--g~i~l  489 (656)
                      ....+++|.++...  +..|++|-.+|.+.+|....+.    .+..+..+ .++..+.-++.. ..+++||..  ..+.+
T Consensus       101 ~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki  177 (412)
T KOG3881|consen  101 VSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI  177 (412)
T ss_pred             cccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence            34456777777765  4678899999999999988443    23333333 456667767644 456668888  88999


Q ss_pred             EECCCCceeEEecCCC---------CCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcC
Q 006220          490 WSMDRIQPLRIMAGHL---------SDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSP  557 (656)
Q Consensus       490 wd~~~~~~~~~~~~~~---------~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp  557 (656)
                      ||+.+.+++..-..-.         -.++.+.|-+.  ...|++++.-+.||+||.+.+ +++..|.-...+++++...|
T Consensus       178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p  257 (412)
T KOG3881|consen  178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP  257 (412)
T ss_pred             eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence            9999875554433211         23577888876  789999999999999999976 57888887889999999999


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCeeeEe-eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220          558 DGRYMASGDEDGTIMMWDLASGRCVTP-LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       558 ~g~~L~s~~~dg~I~iwD~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                      +|++|++|..-|.+..||++.++.+.. +.+..+.|+++..+|.+.+++++|-|..|||+|+.+...+..
T Consensus       258 ~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  258 SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence            999999999999999999999998877 788899999999999999999999999999999999655543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.59  E-value=2e-14  Score=148.11  Aligned_cols=173  Identities=22%  Similarity=0.390  Sum_probs=134.3

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCC-EEEEE
Q 006220          361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD-FILSS  439 (656)
Q Consensus       361 ~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~-~L~s~  439 (656)
                      +++--|..|...|.|.+.|........                .+        .....-....|+|+.|-|.+. .++.+
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sk----------------lf--------ne~r~i~ktsvT~ikWvpg~~~~Fl~a  238 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSK----------------LF--------NEERLINKSSVTCIKWVPGSDSLFLVA  238 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHH----------------hh--------hhcccccccceEEEEEEeCCCceEEEE
Confidence            566778889999999988865310000                00        000001237899999999654 56677


Q ss_pred             eCCCeEEEEeccC--------------Cc--------------eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEE
Q 006220          440 SADTTIRLWSTKL--------------NA--------------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (656)
Q Consensus       440 s~Dg~I~lwd~~~--------------~~--------------~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd  491 (656)
                      -.+|.+.++|...              +.              .+..+.-....|..++|+|||.+||+.+.||.++|+|
T Consensus       239 ~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~  318 (636)
T KOG2394|consen  239 HASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFD  318 (636)
T ss_pred             EecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEee
Confidence            7889999997531              11              1111222235688899999999999999999999999


Q ss_pred             CCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcC
Q 006220          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP  557 (656)
Q Consensus       492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp  557 (656)
                      .++.+.+..+....+...||+|+|||+||++|+.|.-|.+|.+..++.+..-.+|.++|+.++|.|
T Consensus       319 fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  319 FDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            999888888888888999999999999999999999999999999999999999999999999983

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=1.1e-13  Score=143.75  Aligned_cols=273  Identities=13%  Similarity=0.167  Sum_probs=190.4

Q ss_pred             eeCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCCcccccccCCCC------CCCCCCccccCCCCCceeeEEeecC
Q 006220          348 INTHNGLNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGE------NDTTPREDIIGPNGRKRSYTLYQGH  420 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~h  420 (656)
                      +.+...-+.|..||||+| +|+|...-.|++||+...............      .+......++..+..........-|
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h  127 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH  127 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence            455666788999999998 567888999999999875433221100000      0000000011000000000000001


Q ss_pred             -----ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 006220          421 -----SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI  495 (656)
Q Consensus       421 -----~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~  495 (656)
                           ...-..++++.-+.-|++++....|+-+++..|.-+..+....++++++..++...+|++|+.+|.+-+||.+..
T Consensus       128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence                 112234455443333444455557999999999999888888899999999999999999999999999999877


Q ss_pred             ceeEEec------CCCC-----CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcCC--CCE
Q 006220          496 QPLRIMA------GHLS-----DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPD--GRY  561 (656)
Q Consensus       496 ~~~~~~~------~~~~-----~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~--g~~  561 (656)
                      ..+..+.      .|.+     .|+++.|+.+|-.+++|+++|.|.|||+++.+++..-. +..-+|..+.|.+.  +..
T Consensus       208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~  287 (703)
T KOG2321|consen  208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK  287 (703)
T ss_pred             hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence            6655443      2333     39999999999999999999999999999988876432 23458999999875  455


Q ss_pred             EEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       562 L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      +++.. ...++|||-.+|+....+.. +..+..+|+-|++.+++++-.++.+..|=+..-.
T Consensus       288 v~S~D-k~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  288 VVSMD-KRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             EEecc-hHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence            66654 46899999999999888754 3458999999999999999999888887776543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.58  E-value=2.3e-12  Score=127.99  Aligned_cols=199  Identities=15%  Similarity=0.212  Sum_probs=154.4

Q ss_pred             CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC---CCccEEEEEEecCCCEEEEEE--CCCcEEEEECCC
Q 006220          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG---HNYPVWDVQFNPQGHYFASSS--HDRTARIWSMDR  494 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~---h~~~V~~l~~sp~~~~l~sgs--~Dg~i~lwd~~~  494 (656)
                      ...+|.+|.++.  +.|+++-.+. |+|||+++.+.+.++..   +...+..+++++.+.|++.-+  ..|.|.+||+.+
T Consensus        86 fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n  162 (391)
T KOG2110|consen   86 FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN  162 (391)
T ss_pred             cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc
Confidence            346788898873  5666666654 99999999988877654   444566777777777887654  568999999999


Q ss_pred             CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCc-EEEEeCCCCeeEEEEecCC--CCeEEEEEcCCCCEEEEEECCCcE
Q 006220          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT-VRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMASGDEDGTI  571 (656)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~-V~iwd~~~~~~~~~~~~h~--~~i~~l~~sp~g~~L~s~~~dg~I  571 (656)
                      -+++..+..|.+.+.|++|+++|.+|||+|..|+ ||++.+.+|+.+..|+--.  ..|.+++|+|++.+|++.++.++|
T Consensus       163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV  242 (391)
T KOG2110|consen  163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV  242 (391)
T ss_pred             ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence            9999999999999999999999999999999987 8999999999998886432  368899999999999999999999


Q ss_pred             EEEeCCCCe-------------------------------------eeEeeeCCCc---cEEEEEEcCCCCEEEEEECCC
Q 006220          572 MMWDLASGR-------------------------------------CVTPLMGHTS---CVWTLAYSCEGSLLASGSADC  611 (656)
Q Consensus       572 ~iwD~~~~~-------------------------------------~~~~~~~h~~---~V~~l~~s~~~~~l~sgs~Dg  611 (656)
                      +||.+....                                     .....+...+   .+..+.-.+...++..++.||
T Consensus       243 HiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG  322 (391)
T KOG2110|consen  243 HIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDG  322 (391)
T ss_pred             EEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCC
Confidence            999875311                                     0000111111   222222234678899999999


Q ss_pred             cEEEEeCCCC
Q 006220          612 TVKLWDVTTS  621 (656)
Q Consensus       612 ~I~iWd~~~~  621 (656)
                      .++.|.+...
T Consensus       323 ~~y~y~l~~~  332 (391)
T KOG2110|consen  323 HLYSYRLPPK  332 (391)
T ss_pred             eEEEEEcCCC
Confidence            9999998763

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1e-12  Score=143.69  Aligned_cols=203  Identities=13%  Similarity=0.034  Sum_probs=146.2

Q ss_pred             EEeecCccCEEEEEEccCCCEEEEEeC---CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEE-EEECCCc--EE
Q 006220          415 TLYQGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRT--AR  488 (656)
Q Consensus       415 ~~l~~h~~~V~~l~~spd~~~L~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-sgs~Dg~--i~  488 (656)
                      ..+..|...+.+.+|+|||+.|+..+.   +..|.+||+.++... .+..+...+...+|+|+|..++ +.+.++.  |+
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            445567889999999999998887763   468999999887653 3445566778899999998875 4555554  77


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~  565 (656)
                      +||+.++... .+..+........|+|+|+.|+..+. +|  .|++||+.++...+ +..+.+.+....|+|+|++|+..
T Consensus       274 ~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        274 TMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             EEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEE
Confidence            7788876554 45556666778999999999987764 33  68888987665544 33345567778999999999876


Q ss_pred             ECC---CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC------CcEEEEeCCCCC
Q 006220          566 DED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD------CTVKLWDVTTST  622 (656)
Q Consensus       566 ~~d---g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D------g~I~iWd~~~~~  622 (656)
                      +.+   ..|.+||+..+. ...+. ....+.+..|+|||+.|+..+.+      ..+.++|+..+.
T Consensus       352 ~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        352 KQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             EcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence            643   368889975543 33332 22346788999999988776543      257777876543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=9.4e-13  Score=130.06  Aligned_cols=278  Identities=15%  Similarity=0.200  Sum_probs=179.7

Q ss_pred             HHHHhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCc
Q 006220          324 ILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE  402 (656)
Q Consensus       324 ~~~~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~  402 (656)
                      ++....+.+++++.+....+.++ ......|+|++|-|. ++-|++|+. +.|.||..+.......              
T Consensus       114 ava~nddvVriy~ksst~pt~Lk-s~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r--------------  177 (445)
T KOG2139|consen  114 AVATNDDVVRIYDKSSTCPTKLK-SVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANR--------------  177 (445)
T ss_pred             hhhccCcEEEEeccCCCCCceec-chhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccc--------------
Confidence            34456677888776653333222 233457999999997 556777755 5588999874211100              


Q ss_pred             cccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeC-CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE
Q 006220          403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS  481 (656)
Q Consensus       403 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg  481 (656)
                      .+.........+....|| .+|+++.|.+||..+++++. |..|.|||.+++.++....-..+.+.-+.|||+|.+|+.+
T Consensus       178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence            000001112233344556 79999999999999998885 5789999999998876554456678899999999999999


Q ss_pred             ECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC----Ce--------eEE---EE---
Q 006220          482 SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS----GE--------CVR---IF---  543 (656)
Q Consensus       482 s~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~----~~--------~~~---~~---  543 (656)
                      +-|+..++|...............+.|...+|+|.|..|+..+. |.-++|.+.-    +.        .+.   .+   
T Consensus       257 t~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~  335 (445)
T KOG2139|consen  257 TCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV  335 (445)
T ss_pred             cccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence            99999999965443322222233458999999999998766543 3334444321    10        000   00   


Q ss_pred             ---ec---CCCCeEEEEEcCCCCEEEEEECCC--------cEEEEeCCCCeeeEeee-CC--CccEEEEEEcC---CCCE
Q 006220          544 ---IG---HRSMILSLAMSPDGRYMASGDEDG--------TIMMWDLASGRCVTPLM-GH--TSCVWTLAYSC---EGSL  603 (656)
Q Consensus       544 ---~~---h~~~i~~l~~sp~g~~L~s~~~dg--------~I~iwD~~~~~~~~~~~-~h--~~~V~~l~~s~---~~~~  603 (656)
                         .+   ..+.+.+++|.|.|.+||+....+        .|.+||.+..-.+.-.. +-  .....-++|+|   ++.+
T Consensus       336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~l  415 (445)
T KOG2139|consen  336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRL  415 (445)
T ss_pred             hhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcE
Confidence               11   246789999999999999976543        47788876544333221 10  11234566665   5677


Q ss_pred             EEEEECCCcEEEEeCC
Q 006220          604 LASGSADCTVKLWDVT  619 (656)
Q Consensus       604 l~sgs~Dg~I~iWd~~  619 (656)
                      |..+=..|.|.-|++.
T Consensus       416 LsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  416 LSIAWSTGRIQRYPLT  431 (445)
T ss_pred             EEEEeccCceEeeeeE
Confidence            7777778888877763

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=3.2e-13  Score=147.44  Aligned_cols=221  Identities=18%  Similarity=0.121  Sum_probs=153.1

Q ss_pred             EEEeeCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc
Q 006220          345 YTFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~  421 (656)
                      ..+..+...+.+.+|+|||+.|+..+.+   ..|.+|++.....                             ..+..+.
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-----------------------------~~l~~~~  247 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-----------------------------ELVASFR  247 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----------------------------EEeccCC
Confidence            3455667789999999999999987643   4699999864211                             1122233


Q ss_pred             cCEEEEEEccCCCEEE-EEeCCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CCc--EEEEECCCC
Q 006220          422 GPVYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRT--ARIWSMDRI  495 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg~--i~lwd~~~~  495 (656)
                      +...+.+|+|||+.|+ +.+.+|  .|++||+.++.. ..+..+.......+|+|+|++++.++. +|.  |+++++.++
T Consensus       248 g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g  326 (433)
T PRK04922        248 GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG  326 (433)
T ss_pred             CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            4455789999999775 555555  599999987764 344445555567899999999887764 444  667777766


Q ss_pred             ceeEEecCCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC---C
Q 006220          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---G  569 (656)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d---g  569 (656)
                      +..+.. .+.......+|+|+|++|+..+.++   .|.+||+.+++... +. +........|+|||++|+..+.+   +
T Consensus       327 ~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~  403 (433)
T PRK04922        327 SAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATREGGRG  403 (433)
T ss_pred             CeEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEecCCce
Confidence            544433 2333455789999999998876443   69999998887653 33 33345567999999988776643   4


Q ss_pred             cEEEEeCCCCeeeEeeeCCCccEEEEEEcC
Q 006220          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSC  599 (656)
Q Consensus       570 ~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~  599 (656)
                      .|.++++. +.....+..+.+.+...+|+|
T Consensus       404 ~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        404 VLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            68888874 555566666666777788876

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2.2e-13  Score=135.29  Aligned_cols=247  Identities=16%  Similarity=0.215  Sum_probs=183.1

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      -..|.+.|.|++|....++|.+|..+++|...|+.+....                          .+.......+.|+.
T Consensus       101 ~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi--------------------------~V~~~~~~~~~VY~  154 (609)
T KOG4227|consen  101 EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI--------------------------YVANENNNRGDVYH  154 (609)
T ss_pred             cCccccceEEEEEccCCeeEecCCCcceeEeeecccceee--------------------------eeecccCcccceee
Confidence            3455678999999999999999999999999998752110                          01111123469999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeccCCce---eEEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCCce-eEEe
Q 006220          427 ASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQP-LRIM  501 (656)
Q Consensus       427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~~~-~~~~  501 (656)
                      +..+|..+.|++.+.+|.|.+||.+....   ..+..........+.|+|. ..+|++.+..+-+.+||.+.... +...
T Consensus       155 m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~  234 (609)
T KOG4227|consen  155 MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQR  234 (609)
T ss_pred             cccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhh
Confidence            99999999999999999999999986542   2333334556788999995 56788888889999999986432 2111


Q ss_pred             ---cCCCC---CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC-------CeEEEEEcCCCCEEEEEECC
Q 006220          502 ---AGHLS---DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-------MILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       502 ---~~~~~---~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~-------~i~~l~~sp~g~~L~s~~~d  568 (656)
                         .+-..   .-..+.|+|+|+.+.+--....-.+||+-+..|...-..|..       .+.+++|.-+. -+++|+.+
T Consensus       235 ~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~  313 (609)
T KOG4227|consen  235 SMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDH  313 (609)
T ss_pred             hccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcc
Confidence               12112   225688999999998877777777899887655433233322       45677777554 49999999


Q ss_pred             CcEEEEeCCCC-----------------------eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          569 GTIMMWDLASG-----------------------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       569 g~I~iwD~~~~-----------------------~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      -.|++|.+...                       +.+..+++|.+-+..+.|+|...+|++.|..+.++||.-..
T Consensus       314 ~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  314 WGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             cceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence            99999988531                       23445679999999999999999999999999999998543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=3.1e-13  Score=147.10  Aligned_cols=222  Identities=17%  Similarity=0.154  Sum_probs=149.9

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      .+..+...+.+.+|||||+.|+..+.+   ..|.+||+.+..                             ...+....+
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-----------------------------~~~l~~~~g  240 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-----------------------------RRVVANFKG  240 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-----------------------------EEEeecCCC
Confidence            344566789999999999999887643   359999987421                             111222334


Q ss_pred             CEEEEEEccCCCEEE-EEeCCCeEEEEeccC-CceeEEeeCCCccEEEEEEecCCCEEEEEEC-CCcEEEEEC--CCCce
Q 006220          423 PVYSASFSPLGDFIL-SSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSM--DRIQP  497 (656)
Q Consensus       423 ~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~lwd~--~~~~~  497 (656)
                      .+.+.+|+|||+.|+ +.+.+|...||.++. +.....+..+........|+|+|+.++..+. +|...+|.+  .++..
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~  320 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA  320 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence            566889999999876 567788777766532 2234455555555667899999998887664 456666654  44443


Q ss_pred             eEEecCCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC---cE
Q 006220          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---TI  571 (656)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg---~I  571 (656)
                      .+.. .+.......+|+|+|++|+..+.++   .|.+||+.+++...... . .......|+|||++|+.++.++   .+
T Consensus       321 ~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l  397 (427)
T PRK02889        321 QRVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVL  397 (427)
T ss_pred             EEEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEE
Confidence            3332 2223344678999999998877654   69999998887654332 2 3346789999999888876544   35


Q ss_pred             EEEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220          572 MMWDLASGRCVTPLMGHTSCVWTLAYSCE  600 (656)
Q Consensus       572 ~iwD~~~~~~~~~~~~h~~~V~~l~~s~~  600 (656)
                      .+.++ .|.....+..+.+.+...+|+|-
T Consensus       398 ~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        398 AAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            56566 46666666667677788888874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=8.2e-13  Score=144.21  Aligned_cols=199  Identities=18%  Similarity=0.179  Sum_probs=142.0

Q ss_pred             eecCccCEEEEEEccCCCEEEEEeC---CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEE-EEECCC--cEEEE
Q 006220          417 YQGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDR--TARIW  490 (656)
Q Consensus       417 l~~h~~~V~~l~~spd~~~L~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-sgs~Dg--~i~lw  490 (656)
                      +..|...+.+.+|+|||+.|+.++.   +..|.+||+.++.... +..+.....+..|+|+|+.++ +.+.+|  .|++|
T Consensus       199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~  277 (433)
T PRK04922        199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVM  277 (433)
T ss_pred             eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence            4456778999999999999888764   3469999998776543 333344556789999999775 445555  59999


Q ss_pred             ECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CCc--EEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKT--VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~--V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      |+.+++.. .+..+.......+|+|+|++|+.++. +|.  |+++|+.+++..+.. .+......++|||+|++|+..+.
T Consensus       278 d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        278 DLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHG  355 (433)
T ss_pred             ECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEEC
Confidence            99887644 44455555678899999999887764 444  777787777654432 33344557899999999987654


Q ss_pred             CC---cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC---CcEEEEeCCC
Q 006220          568 DG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD---CTVKLWDVTT  620 (656)
Q Consensus       568 dg---~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D---g~I~iWd~~~  620 (656)
                      ++   .|.+||+.+++.. .+. +........|+|||++++..+.+   +.|.+|++..
T Consensus       356 ~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        356 SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             CCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            43   6999999887654 332 22345567999999988777653   3577888754

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=3.2e-13  Score=132.54  Aligned_cols=250  Identities=22%  Similarity=0.370  Sum_probs=178.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC----------
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH----------  420 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h----------  420 (656)
                      ..-|.|+.|...|.+||+|..+|.|.++.-.....                       +.......++.|          
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-----------------------~ey~~~t~fqshepEFDYLkSl   81 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-----------------------GEYNFQTEFQSHEPEFDYLKSL   81 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccc-----------------------cceeeeeeeeccCcccchhhhh
Confidence            45689999999999999999999999998654221                       001122223333          


Q ss_pred             --ccCEEEEEEccCCC--EEEEEeCCCeEEEEeccCCce-----------------------------------eEEe-e
Q 006220          421 --SGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNAN-----------------------------------LVCY-K  460 (656)
Q Consensus       421 --~~~V~~l~~spd~~--~L~s~s~Dg~I~lwd~~~~~~-----------------------------------~~~~-~  460 (656)
                        ...|..+.|.+++.  .++..+.|.+|++|.+.....                                   .+.+ .
T Consensus        82 eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN  161 (433)
T KOG1354|consen   82 EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN  161 (433)
T ss_pred             hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence              35688899998775  567778899999998652211                                   0111 3


Q ss_pred             CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE---ecCC-----CCCeeEEEEcC-CCCEEEEEECCCcEEE
Q 006220          461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI---MAGH-----LSDVDCVRWHI-NCNYIATGSSDKTVRL  531 (656)
Q Consensus       461 ~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~---~~~~-----~~~V~~v~~~p-~~~~l~tgs~dg~V~i  531 (656)
                      .|+..|.+++++.|+..++++. |=.|.+|+++-......   +..+     ..-|++..||| ..+.++-.++.|+|++
T Consensus       162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            5888899999999999888874 67899999864332221   2222     24588999999 4678888999999999


Q ss_pred             EeCCCCeeE----EE------------EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC-CCCeeeEeeeCCC-----
Q 006220          532 WDVSSGECV----RI------------FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL-ASGRCVTPLMGHT-----  589 (656)
Q Consensus       532 wd~~~~~~~----~~------------~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~-~~~~~~~~~~~h~-----  589 (656)
                      .|++.....    ..            |..--..|..+.|+++|+|+++-+. -+|++||+ ...+++.++.-|.     
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~k  319 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSK  319 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence            999853221    11            1122346888999999999998764 58999999 4566777766553     


Q ss_pred             -------ccE---EEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          590 -------SCV---WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       590 -------~~V---~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                             ..|   ..++|+-++.+++||+..+.++++++..+.+..
T Consensus       320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d  365 (433)
T KOG1354|consen  320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKED  365 (433)
T ss_pred             HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCccee
Confidence                   122   357899999999999999999999987766543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.55  E-value=5.2e-13  Score=128.67  Aligned_cols=152  Identities=22%  Similarity=0.418  Sum_probs=113.7

Q ss_pred             EEEEEecCCCEEEEEEC----------CCcEEEEECCC-CceeEEec-CCCCCeeEEEEcCCCCEEEE--EECCCcEEEE
Q 006220          467 WDVQFNPQGHYFASSSH----------DRTARIWSMDR-IQPLRIMA-GHLSDVDCVRWHINCNYIAT--GSSDKTVRLW  532 (656)
Q Consensus       467 ~~l~~sp~~~~l~sgs~----------Dg~i~lwd~~~-~~~~~~~~-~~~~~V~~v~~~p~~~~l~t--gs~dg~V~iw  532 (656)
                      ..+.|+|+|.+|++-..          -|...+|.++. ..++..+. ...++|.+++|+|+|+.+++  |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46889999988766543          12344554422 23444443 24457999999999998765  4467899999


Q ss_pred             eCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC
Q 006220          533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE---DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA  609 (656)
Q Consensus       533 d~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~---dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~  609 (656)
                      |++ ++.+..+  +...+..+.|||+|++|++|+.   .|.|.+||.++.+.+.....  ..++.++|+|+|++|++++.
T Consensus        89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEe
Confidence            996 6666665  3567889999999999999874   36799999999888877643  34789999999999999874


Q ss_pred             ------CCcEEEEeCCCCCce
Q 006220          610 ------DCTVKLWDVTTSTKV  624 (656)
Q Consensus       610 ------Dg~I~iWd~~~~~~~  624 (656)
                            |+.++||++. |+.+
T Consensus       164 ~~r~~~dng~~Iw~~~-G~~l  183 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ-GRLL  183 (194)
T ss_pred             ccceeccccEEEEEec-CeEe
Confidence                  7899999985 4444

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.55  E-value=8.9e-14  Score=131.91  Aligned_cols=158  Identities=19%  Similarity=0.309  Sum_probs=129.3

Q ss_pred             cCccCEEEEEEccC-CC--EEEEEeCCCeEEEEeccCCce----------eEEeeCCCccEEEEEEecCCCEEEEEECCC
Q 006220          419 GHSGPVYSASFSPL-GD--FILSSSADTTIRLWSTKLNAN----------LVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (656)
Q Consensus       419 ~h~~~V~~l~~spd-~~--~L~s~s~Dg~I~lwd~~~~~~----------~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg  485 (656)
                      +..+.|.|..|..+ +.  +|++|-++|.|.+||+.++..          ...+..|..+|.++.|.+.-..=++|+.+.
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d  227 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD  227 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence            34577888886543 33  467888999999999998743          334456999999999998766677888888


Q ss_pred             cEEEEECCCCc---eeE-EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCE
Q 006220          486 TARIWSMDRIQ---PLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY  561 (656)
Q Consensus       486 ~i~lwd~~~~~---~~~-~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~  561 (656)
                      .+..|+++...   +++ ...-....|..+..-|+++.+||++-|+.||+|..++.+++.+++-|.+.|++++|+|+...
T Consensus       228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~l  307 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCEL  307 (323)
T ss_pred             cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCch
Confidence            89999886531   111 11222356888999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCcEEEEeC
Q 006220          562 MASGDEDGTIMMWDL  576 (656)
Q Consensus       562 L~s~~~dg~I~iwD~  576 (656)
                      +|+++.|++|.+|++
T Consensus       308 mAaaskD~rISLWkL  322 (323)
T KOG0322|consen  308 MAAASKDARISLWKL  322 (323)
T ss_pred             hhhccCCceEEeeec
Confidence            999999999999986

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.5e-12  Score=142.21  Aligned_cols=220  Identities=14%  Similarity=0.098  Sum_probs=152.4

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~---dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      .+..+...+.+.+|||||+.|+..+.   +..|.+|++.+..                             ...+..+.+
T Consensus       196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-----------------------------~~~l~~~~g  246 (435)
T PRK05137        196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-----------------------------RELVGNFPG  246 (435)
T ss_pred             EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-----------------------------EEEeecCCC
Confidence            34566778999999999999988753   4679999986421                             122344566


Q ss_pred             CEEEEEEccCCCEEE-EEeCCCe--EEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CC--cEEEEECCCCc
Q 006220          423 PVYSASFSPLGDFIL-SSSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQ  496 (656)
Q Consensus       423 ~V~~l~~spd~~~L~-s~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg--~i~lwd~~~~~  496 (656)
                      .+.+.+|+|||+.|+ +.+.++.  |.+||+.++.. ..+..+........|+|+|+.++.++. +|  .|++||+..+.
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN  325 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence            778899999999765 5555555  77778887654 445556666778999999999887773 33  68888987765


Q ss_pred             eeEEecCCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC-----
Q 006220          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-----  568 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d-----  568 (656)
                      ..+.. .+...+....|+|+|++|+..+.+   ..|.+||+.++. .+.+. ....+..+.|+|||++|+..+.+     
T Consensus       326 ~~~lt-~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~  402 (435)
T PRK05137        326 PRRIS-FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGG  402 (435)
T ss_pred             eEEee-cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCC
Confidence            54443 334556778999999999887643   368889976554 34343 23356788999999988775543     


Q ss_pred             -CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220          569 -GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE  600 (656)
Q Consensus       569 -g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~  600 (656)
                       ..+.++|+..+.. ..+. ..+.+...+|+|-
T Consensus       403 ~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        403 APKLYTVDLTGRNE-REVP-TPGDASDPAWSPL  433 (435)
T ss_pred             cceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence             2578888865543 3443 2344666777763

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.54  E-value=7.6e-13  Score=127.53  Aligned_cols=155  Identities=19%  Similarity=0.403  Sum_probs=115.7

Q ss_pred             EEEEEccCCCEEEEEeC----------CCeEEEEeccCC-ceeEEeeC-CCccEEEEEEecCCCEEEEEE--CCCcEEEE
Q 006220          425 YSASFSPLGDFILSSSA----------DTTIRLWSTKLN-ANLVCYKG-HNYPVWDVQFNPQGHYFASSS--HDRTARIW  490 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~----------Dg~I~lwd~~~~-~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs--~Dg~i~lw  490 (656)
                      ..+.|+|+|.+|+.-..          -|...+|.++.. .....+.. ..++|.+++|+|+|..|++..  .++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35789999987664332          134566666332 23333332 345799999999999976653  67899999


Q ss_pred             ECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      |++ .+++..+.  ...++.+.|+|+|++|++|+.   .|.|.+||+++.+.+..+. | ..++.++|||+|++|++++.
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence            997 56666653  467889999999999999874   4679999999888887664 3 35789999999999999864


Q ss_pred             ------CCcEEEEeCCCCeeeEee
Q 006220          568 ------DGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       568 ------dg~I~iwD~~~~~~~~~~  585 (656)
                            |+.++||+. .|+.+...
T Consensus       164 ~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             ccceeccccEEEEEe-cCeEeEec
Confidence                  788999998 57766554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.4e-12  Score=141.87  Aligned_cols=197  Identities=18%  Similarity=0.196  Sum_probs=135.4

Q ss_pred             eecCccCEEEEEEccCCCEEEEEeCC---CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEE-EEECCCcEEEEE-
Q 006220          417 YQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWS-  491 (656)
Q Consensus       417 l~~h~~~V~~l~~spd~~~L~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-sgs~Dg~i~lwd-  491 (656)
                      +..+...+.+.+|+|||+.|+.++.+   ..|.+||+.+++... +......+....|+|+|+.++ +.+.+|...+|. 
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            44577889999999999998877643   459999999886543 333344566899999999886 456777766665 


Q ss_pred             -CCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEe--CCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          492 -MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWD--VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       492 -~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd--~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                       +..+. .+.+..+........|+|+|+.|+..+. +|...+|.  +.++...+. ..+........|||+|++|+..+.
T Consensus       270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~~s~  347 (427)
T PRK02889        270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTSPRISPDGKLLAYISR  347 (427)
T ss_pred             ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCceEECCCCCEEEEEEc
Confidence             44443 4445555555677899999998886654 45556664  445544332 223334456789999999987765


Q ss_pred             CC---cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCC---cEEEEeC
Q 006220          568 DG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC---TVKLWDV  618 (656)
Q Consensus       568 dg---~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg---~I~iWd~  618 (656)
                      ++   .|.+||+.+++.. .+..+ .......|+|||+.|+.++.++   .+.+.++
T Consensus       348 ~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        348 VGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             cCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            54   6999999887644 33322 2346789999999988887554   2445455

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.51  E-value=1.9e-12  Score=144.92  Aligned_cols=217  Identities=17%  Similarity=0.246  Sum_probs=162.9

Q ss_pred             CceeeEEeecCccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCC-------ceeEEeeCCCccEEEEEEecCCCEEEEE
Q 006220          410 RKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQGHYFASS  481 (656)
Q Consensus       410 ~~~~~~~l~~h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~~~~l~sg  481 (656)
                      .+..+..+..|+..|..++.++.. .+++|||.||+|++|+.+.-       .+..++......+.++.+.+.++.+|++
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            456677788899999999988766 89999999999999997631       2334455457789999999999999999


Q ss_pred             ECCCcEEEEECCCCc-------eeEEecCCCC-C-eeEEEEcC-CC-CEEEEEECCCcEEEEeCCCCeeEEEEe--cCCC
Q 006220          482 SHDRTARIWSMDRIQ-------PLRIMAGHLS-D-VDCVRWHI-NC-NYIATGSSDKTVRLWDVSSGECVRIFI--GHRS  548 (656)
Q Consensus       482 s~Dg~i~lwd~~~~~-------~~~~~~~~~~-~-V~~v~~~p-~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~--~h~~  548 (656)
                      +.||.|++.+++...       +.+....+.. . |.+-+|.. .+ ..++.++.-+.|..||+++......++  ...+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            999999999998621       2223222222 2 23333332 22 367888889999999998766554433  2347


Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-CCCccEEEEEEcC---CCCEEEEEE--CCCcEEEEeCCCCC
Q 006220          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSC---EGSLLASGS--ADCTVKLWDVTTST  622 (656)
Q Consensus       549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~---~~~~l~sgs--~Dg~I~iWd~~~~~  622 (656)
                      .|++++.+|.+.+++.|+..|.+.+||++-+.++..+. .+..+|..+..+|   .....++++  ..+-|.+|++.++.
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            89999999999999999999999999999998888775 3457788887766   334555554  46789999999986


Q ss_pred             ceee
Q 006220          623 KVLK  626 (656)
Q Consensus       623 ~~~~  626 (656)
                      +...
T Consensus      1277 ~~~v 1280 (1431)
T KOG1240|consen 1277 RQTV 1280 (1431)
T ss_pred             ceEE
Confidence            6443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=2.7e-12  Score=128.28  Aligned_cols=221  Identities=14%  Similarity=0.219  Sum_probs=165.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ..|..++.. || .|.+|..+|.+.+|........                        ......+..+ ..++.+.-++
T Consensus       106 ~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h------------------------ss~l~~la~g-~g~~~~r~~~  158 (412)
T KOG3881|consen  106 KSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH------------------------SSKLIKLATG-PGLYDVRQTD  158 (412)
T ss_pred             ccccchhhc-CC-EEEEEecCCcEEEEeccCCccc------------------------cccceeeecC-CceeeeccCC
Confidence            344444443 33 5667789999999998742110                        0111222222 5567777777


Q ss_pred             CCCE-EEEEeCC--CeEEEEeccCCceeEEeeCC-------CccE--EEEEEecC--CCEEEEEECCCcEEEEECCCC-c
Q 006220          432 LGDF-ILSSSAD--TTIRLWSTKLNANLVCYKGH-------NYPV--WDVQFNPQ--GHYFASSSHDRTARIWSMDRI-Q  496 (656)
Q Consensus       432 d~~~-L~s~s~D--g~I~lwd~~~~~~~~~~~~h-------~~~V--~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~-~  496 (656)
                      .... +++|+..  ..+.+||+...+.+..-+.-       .-||  +++.|-+.  ...|++++.-+.+++||++.+ +
T Consensus       159 ~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR  238 (412)
T KOG3881|consen  159 TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR  238 (412)
T ss_pred             CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc
Confidence            6654 5568888  78999999977555443321       1234  46788886  788999999999999999864 5


Q ss_pred             eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~-~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD  575 (656)
                      |+..+.-...+++++...|.++.|++|..-|.+..||++++..... +.+..+.|++|..+|.+++|++||-|..|+|+|
T Consensus       239 PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  239 PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD  318 (412)
T ss_pred             ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence            7888887888999999999999999999999999999999998877 889999999999999999999999999999999


Q ss_pred             CCCCeeeEeeeCCCccEEEEEEcCC
Q 006220          576 LASGRCVTPLMGHTSCVWTLAYSCE  600 (656)
Q Consensus       576 ~~~~~~~~~~~~h~~~V~~l~~s~~  600 (656)
                      +.+.+++.... -...++++-+.++
T Consensus       319 ~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  319 IKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             cccchhhhhhh-hhccccEEEecCC
Confidence            99977665442 1234566666543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.48  E-value=2.9e-11  Score=118.07  Aligned_cols=197  Identities=16%  Similarity=0.256  Sum_probs=141.1

Q ss_pred             cCccCEEEEEEccCCCEEEEEeCCCeEEEEecc-CCceeEEeeCCC--ccEEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 006220          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-LNANLVCYKGHN--YPVWDVQFNPQGHYFASSS-HDRTARIWSMDR  494 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~-~~~~~~~~~~h~--~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~  494 (656)
                      ....+|.+|.+.++  .+++.- .+.|.||... ..+.+..+....  ....+++-+.+..+||.-| .-|.|++-|+..
T Consensus        92 ~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~  168 (346)
T KOG2111|consen   92 SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS  168 (346)
T ss_pred             EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh
Confidence            35688999999854  455554 4689999987 334455444322  2244444444445555544 569999999976


Q ss_pred             Cce--eEEecCCCCCeeEEEEcCCCCEEEEEECCCc-EEEEeCCCCeeEEEEec--CCCCeEEEEEcCCCCEEEEEECCC
Q 006220          495 IQP--LRIMAGHLSDVDCVRWHINCNYIATGSSDKT-VRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDG  569 (656)
Q Consensus       495 ~~~--~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~-V~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~~L~s~~~dg  569 (656)
                      .+.  ...+..|.++|.|++.+-+|..+||+|..|+ |||||..+|..+..+.-  ....|.||+|||++.+|+++++.|
T Consensus       169 ~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg  248 (346)
T KOG2111|consen  169 TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG  248 (346)
T ss_pred             cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence            655  5778899999999999999999999999997 89999999999988763  235799999999999999999999


Q ss_pred             cEEEEeCCCCeee------------------------EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          570 TIMMWDLASGRCV------------------------TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       570 ~I~iwD~~~~~~~------------------------~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      ++.||.++....-                        ..+.-..+...-++|..+.+.++..+.||+-+=+.+
T Consensus       249 TlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f  321 (346)
T KOG2111|consen  249 TLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKF  321 (346)
T ss_pred             eEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEe
Confidence            9999988642211                        111122344455667666566666777777554443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.45  E-value=4.8e-12  Score=140.34  Aligned_cols=198  Identities=20%  Similarity=0.335  Sum_probs=161.7

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCC----ccEEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN----YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~----~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~  497 (656)
                      +.|....+.-+...++.++.+..+.+||...+.......+..    .+..-+.++++.-++++|+--+.|.+|+......
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence            344444555566788888888999999988665554443221    1223345667778999999999999999864333


Q ss_pred             eEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEE-EEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~-~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      -..+.+|.+.+..+.|+-+|.++++.|.|.++|+|++.+.+... ..-+|+..|..++|.|+  .+++++.|.+.++|+.
T Consensus       168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence            33678999999999999999999999999999999999988776 66789999999999998  9999999999999976


Q ss_pred             CCCeeeEeeeCCC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          577 ASGRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       577 ~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                       .+..+..+.+|. ..|+.++..++...++|++.||.+++|++....
T Consensus       246 -~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  246 -NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             -ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence             466666888887 689999999999999999999999999987643

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.44  E-value=2e-11  Score=119.32  Aligned_cols=242  Identities=19%  Similarity=0.283  Sum_probs=166.7

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          352 NGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      +.|.-+.|+.|.-++.++ ..++.|.+|++..                            ..-.......+.++.+++||
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Q----------------------------pew~ckIdeg~agls~~~WS  100 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ----------------------------PEWYCKIDEGQAGLSSISWS  100 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeec----------------------------ceeEEEeccCCCcceeeeEC
Confidence            346667788887776654 6788999999874                            22344555667889999999


Q ss_pred             cCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC--------------------------
Q 006220          431 PLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--------------------------  483 (656)
Q Consensus       431 pd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~--------------------------  483 (656)
                      |||+.+ .+...+-.|.+|++.+...... +-....+..++|+|+|++.+.++.                          
T Consensus       101 PdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~  179 (447)
T KOG4497|consen  101 PDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTI  179 (447)
T ss_pred             CCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcc
Confidence            999755 5666788999999987655432 222345678899999988877664                          


Q ss_pred             ----------CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE----------
Q 006220          484 ----------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF----------  543 (656)
Q Consensus       484 ----------Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~----------  543 (656)
                                +..+.+||.--...+..+. -.-.+..++|+|.+++|++|+.|+.+|+.+--+.+....|          
T Consensus       180 DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~  258 (447)
T KOG4497|consen  180 DLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPT  258 (447)
T ss_pred             cccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCch
Confidence                      1223444432111222221 2246889999999999999999999998654222211100          


Q ss_pred             --------------------------------------------------e------cCCCCeEEEEEcCCCCEEEEEEC
Q 006220          544 --------------------------------------------------I------GHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       544 --------------------------------------------------~------~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                                                                        +      .....+.-++||+|..++++-.+
T Consensus       259 ~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd  338 (447)
T KOG4497|consen  259 LHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND  338 (447)
T ss_pred             hhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence                                                              0      11224567899999999988653


Q ss_pred             --CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          568 --DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       568 --dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                        -+.+.+||++..+....+ -...+|....|+|....|+.+.....+++|.......+
T Consensus       339 ~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V  396 (447)
T KOG4497|consen  339 KYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV  396 (447)
T ss_pred             CCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence              367999999876544333 34568999999999988888888888999988664433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.44  E-value=2.3e-10  Score=121.27  Aligned_cols=244  Identities=14%  Similarity=0.150  Sum_probs=159.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCC
Q 006220          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (656)
Q Consensus       355 ~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~  434 (656)
                      ..+.|+|||+++.+++.||.|.++|+.+..                            ....... .....++++|+||+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~----------------------------~v~~i~~-G~~~~~i~~s~DG~   90 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGK----------------------------VVATIKV-GGNPRGIAVSPDGK   90 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSS----------------------------EEEEEE--SSEEEEEEE--TTT
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCccc----------------------------EEEEEec-CCCcceEEEcCCCC
Confidence            447799999999999999999999998622                            2222322 23457899999999


Q ss_pred             EEEEEe-CCCeEEEEeccCCceeEEeeCC-------CccEEEEEEecCCCEEEEEECC-CcEEEEECCCCceeEE-ecCC
Q 006220          435 FILSSS-ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSHD-RTARIWSMDRIQPLRI-MAGH  504 (656)
Q Consensus       435 ~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~sgs~D-g~i~lwd~~~~~~~~~-~~~~  504 (656)
                      +++++. ..+++.++|..+.+.+..+...       ...+..+..+|....++..-.| +.|-+.|....+++.. ....
T Consensus        91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~  170 (369)
T PF02239_consen   91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV  170 (369)
T ss_dssp             EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred             EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc
Confidence            988665 6899999999999988877543       3457788888888877766654 7888888877655432 2223


Q ss_pred             CCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCeeEEEEe---------------------------------------
Q 006220          505 LSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFI---------------------------------------  544 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~~~~~~~~~---------------------------------------  544 (656)
                      ........|+|+++|++++ ..+..|-++|..+++.+..+.                                       
T Consensus       171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~  250 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP  250 (369)
T ss_dssp             -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred             cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc
Confidence            3456788999999998775 456688888888776554321                                       


Q ss_pred             ----------------cCCCCeEEEEEcCCCCEEEEE----ECCCcEEEEeCCCCeeeEeeeCC-CccEEEEEEcCCCCE
Q 006220          545 ----------------GHRSMILSLAMSPDGRYMASG----DEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSL  603 (656)
Q Consensus       545 ----------------~h~~~i~~l~~sp~g~~L~s~----~~dg~I~iwD~~~~~~~~~~~~h-~~~V~~l~~s~~~~~  603 (656)
                                      ...++ .-+..+|+++++++.    ...++|.++|..+.+.+.++... ...+..+.|+++|+.
T Consensus       251 v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~  329 (369)
T PF02239_consen  251 VSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE  329 (369)
T ss_dssp             TT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred             cccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence                            11111 336679999999988    45589999999999888777532 235899999999997


Q ss_pred             EEEEECC--CcEEEEeCCCCCceeecc
Q 006220          604 LASGSAD--CTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       604 l~sgs~D--g~I~iWd~~~~~~~~~~~  628 (656)
                      +..+..+  |.|.|||..+.+.....+
T Consensus       330 v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  330 VWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            6655544  369999999977665443

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.43  E-value=3.5e-11  Score=117.60  Aligned_cols=264  Identities=16%  Similarity=0.268  Sum_probs=163.2

Q ss_pred             ceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCC
Q 006220          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (656)
Q Consensus       331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (656)
                      .++.|+...|...+ .+-....++.+++|||||+.+. +..-+-.|.||++.+...........+     ...-.+.+++
T Consensus        72 ~vqvwsl~Qpew~c-kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~-----~kg~~f~~dg  145 (447)
T KOG4497|consen   72 KVQVWSLVQPEWYC-KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN-----VKGYAFHPDG  145 (447)
T ss_pred             eEEEEEeecceeEE-EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccC-----ceeEEECCCC
Confidence            56667665555433 3445567899999999996655 455688999999986432111100000     0000000000


Q ss_pred             Cc---------------------eeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEE
Q 006220          410 RK---------------------RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD  468 (656)
Q Consensus       410 ~~---------------------~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~  468 (656)
                      ..                     .....+.-.+-..+++.|+|||..|         .+||.--.-.+..+. ..-.+..
T Consensus       146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l---------aVwd~~Leykv~aYe-~~lG~k~  215 (447)
T KOG4497|consen  146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL---------AVWDNVLEYKVYAYE-RGLGLKF  215 (447)
T ss_pred             ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE---------EEecchhhheeeeee-eccceeE
Confidence            00                     0000111112234556666666544         345533222222332 2346888


Q ss_pred             EEEecCCCEEEEEECCCcEEEEECCCCc----------------------------------------------------
Q 006220          469 VQFNPQGHYFASSSHDRTARIWSMDRIQ----------------------------------------------------  496 (656)
Q Consensus       469 l~~sp~~~~l~sgs~Dg~i~lwd~~~~~----------------------------------------------------  496 (656)
                      ++|+|.++++++|+.|+.+++.+--+-+                                                    
T Consensus       216 v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~  295 (447)
T KOG4497|consen  216 VEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI  295 (447)
T ss_pred             EEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence            9999999999999999998875421000                                                    


Q ss_pred             ------e--eEE------ecCCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCC
Q 006220          497 ------P--LRI------MAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR  560 (656)
Q Consensus       497 ------~--~~~------~~~~~~~V~~v~~~p~~~~l~tgs~--dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~  560 (656)
                            +  +..      +......+.-++|++++.|++|-.+  -+.+.+||++.-+.-..+. ...+|....|.|...
T Consensus       296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~p  374 (447)
T KOG4497|consen  296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRP  374 (447)
T ss_pred             hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCc
Confidence                  0  001      1112234667899999999988653  3679999998776654443 457899999999988


Q ss_pred             EEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCc
Q 006220          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT  612 (656)
Q Consensus       561 ~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~  612 (656)
                      .|+.+.....+++|... |-......+..-.|..+.|..+|..++-.+.|..
T Consensus       375 rL~vctg~srLY~W~ps-g~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  375 RLVVCTGKSRLYFWAPS-GPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             eEEEEcCCceEEEEcCC-CceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence            88888777889999864 4444444444568999999999999999998864

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.43  E-value=8e-11  Score=128.18  Aligned_cols=198  Identities=19%  Similarity=0.180  Sum_probs=140.2

Q ss_pred             EeecCccCEEEEEEccCCCEEEEEeCC---CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE-ECCC--cEEE
Q 006220          416 LYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDR--TARI  489 (656)
Q Consensus       416 ~l~~h~~~V~~l~~spd~~~L~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~Dg--~i~l  489 (656)
                      .+..+...+.+.+|+|+|++|+.++.+   ..|++||+.++.... +..+...+.+++|+|+|..|+.. +.++  .|++
T Consensus       184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~  262 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV  262 (417)
T ss_pred             EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence            344566778899999999999877654   479999998875543 33355566779999999877654 4444  5889


Q ss_pred             EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~  566 (656)
                      |++.++... .+..+........|+|+|+.|+.++.. +  .|++||+.+++..+ +..+...+..+.|+|+|++|+.++
T Consensus       263 ~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~~~~  340 (417)
T TIGR02800       263 MDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNASPSWSPDGDLIAFVH  340 (417)
T ss_pred             EECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccCeEECCCCCEEEEEE
Confidence            998876543 334454555678999999998876643 3  58888988776543 444556677889999999999888


Q ss_pred             CCC---cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCc---EEEEeC
Q 006220          567 EDG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT---VKLWDV  618 (656)
Q Consensus       567 ~dg---~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~---I~iWd~  618 (656)
                      .++   .|.+||+.++... .+... .......|+|+|+.|+.++.++.   +.+.+.
T Consensus       341 ~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       341 REGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             ccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            776   7999999875432 22222 22345689999998888776643   444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.42  E-value=1.8e-09  Score=114.24  Aligned_cols=249  Identities=15%  Similarity=0.237  Sum_probs=166.1

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          348 INTHNGLNCASISQDGSLVAGGFS----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~----dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      .........++++|++++|.+...    +|.|..|++....                        +..............
T Consensus        33 ~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~------------------------g~L~~~~~~~~~g~~   88 (345)
T PF10282_consen   33 VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT------------------------GTLTLLNSVPSGGSS   88 (345)
T ss_dssp             EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT------------------------TEEEEEEEEEESSSC
T ss_pred             ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc------------------------ceeEEeeeeccCCCC
Confidence            334556778899999999988876    5689999887521                        111122222223345


Q ss_pred             EEEEEEccCCCEEEEEe-CCCeEEEEeccCCceeEE----ee----------CCCccEEEEEEecCCCEEEEEE-CCCcE
Q 006220          424 VYSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVC----YK----------GHNYPVWDVQFNPQGHYFASSS-HDRTA  487 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s-~Dg~I~lwd~~~~~~~~~----~~----------~h~~~V~~l~~sp~~~~l~sgs-~Dg~i  487 (656)
                      ...++++|++++|+++. .+|+|.++++.....+..    +.          .......++.|+|+|+++++.. ....|
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v  168 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV  168 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence            56799999999988876 489999999987433221    11          1234578899999999988875 34579


Q ss_pred             EEEECCCCc--e--eEEec-CCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC--CCee--EEEEec----C--CCCeE
Q 006220          488 RIWSMDRIQ--P--LRIMA-GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS--SGEC--VRIFIG----H--RSMIL  551 (656)
Q Consensus       488 ~lwd~~~~~--~--~~~~~-~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~--~~~~--~~~~~~----h--~~~i~  551 (656)
                      .+|+++...  .  ...+. ........++|+|+++++++.. .+++|.+|++.  ++..  +.....    .  .....
T Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T PF10282_consen  169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA  248 (345)
T ss_dssp             EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred             EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence            999987654  2  12222 3446688999999999987765 46789999988  4432  222221    1  12578


Q ss_pred             EEEEcCCCCEEEEEE-CCCcEEEEeCC--CC--eeeEeeeCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 006220          552 SLAMSPDGRYMASGD-EDGTIMMWDLA--SG--RCVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT  620 (656)
Q Consensus       552 ~l~~sp~g~~L~s~~-~dg~I~iwD~~--~~--~~~~~~~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~  620 (656)
                      .|+++|||++|+++. ..+.|.+|++.  ++  +.+..+.......+.++++|+|++|++++ .++.|.+|++..
T Consensus       249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            899999999988765 56789999993  23  23333433344579999999999998887 567899998854

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.41  E-value=1.7e-11  Score=128.79  Aligned_cols=189  Identities=19%  Similarity=0.282  Sum_probs=158.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeEEeeCC---CccEEEEEEe--------------------cCCCEEEEEECCCcE
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGH---NYPVWDVQFN--------------------PQGHYFASSSHDRTA  487 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~l~~s--------------------p~~~~l~sgs~Dg~i  487 (656)
                      |...+++....||.+++|+...++....|...   .+...+..|.                    .+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            44578999999999999999988776665431   2223333331                    244567888899999


Q ss_pred             EEEECCCCceeEEec--CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220          488 RIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       488 ~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~  565 (656)
                      .+|++..++....+.  .|.+.|+++.++.+-..|.+++.|+.+..|+...+..++.+......+.+++.+|||..++++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            999999998877776  799999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCC-----CCEEEE-EECCCcEEEEeCCCC
Q 006220          566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE-----GSLLAS-GSADCTVKLWDVTTS  621 (656)
Q Consensus       566 ~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~-----~~~l~s-gs~Dg~I~iWd~~~~  621 (656)
                      +  +.|.+||+.+++.+..+.||.++|.+++|.-+     |.++.+ ...+.-|.+|-+...
T Consensus       163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            7  68999999999999999999999999999776     555555 445667888888763

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.41  E-value=4.3e-11  Score=130.31  Aligned_cols=218  Identities=17%  Similarity=0.134  Sum_probs=147.3

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      .+..+...+.+.+|||||++||.++.+   ..|.+|++.+..                             ...+..+.+
T Consensus       184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-----------------------------~~~~~~~~~  234 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-----------------------------REKVASFPG  234 (417)
T ss_pred             EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-----------------------------EEEeecCCC
Confidence            344556678999999999999987654   479999986421                             112233455


Q ss_pred             CEEEEEEccCCCEEE-EEeCCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC-C--cEEEEECCCCc
Q 006220          423 PVYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-R--TARIWSMDRIQ  496 (656)
Q Consensus       423 ~V~~l~~spd~~~L~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D-g--~i~lwd~~~~~  496 (656)
                      .+.+++|+||++.|+ +.+.++  .|.+|++.++.. ..+..+........|+|+|..|+.++.. +  .|++||+.+++
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            677789999998775 444444  588899887654 3334444455677999999988776643 3  58888887766


Q ss_pred             eeEEecCCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC---c
Q 006220          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---T  570 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg---~  570 (656)
                      ..+ +..+...+....|+|+|++++.++.++   .|.+||+.++.... +... .......|+|+|++|+.++.++   .
T Consensus       314 ~~~-l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~  390 (417)
T TIGR02800       314 VRR-LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRGGRGV  390 (417)
T ss_pred             EEE-eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCCCcEE
Confidence            443 333455677889999999999988776   79999998865433 3322 2345568999999888876654   3


Q ss_pred             EEEEeCCCCeeeEeeeCCCccEEEEEE
Q 006220          571 IMMWDLASGRCVTPLMGHTSCVWTLAY  597 (656)
Q Consensus       571 I~iwD~~~~~~~~~~~~h~~~V~~l~~  597 (656)
                      +.+.+. .+.....+..+.+.+..++|
T Consensus       391 l~~~~~-~g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       391 LGLVST-DGRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             EEEEEC-CCceeeECCCCCCCcCCCCC
Confidence            555554 45555555444455555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=7.3e-11  Score=129.03  Aligned_cols=221  Identities=15%  Similarity=0.100  Sum_probs=145.9

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      .+..+...+.+.+|||||+.|+..+.+   ..|.+|++.+...                             ..+....+
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----------------------------~~l~~~~g  243 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----------------------------EQITNFEG  243 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----------------------------EEccCCCC
Confidence            344556678999999999999876543   3588888764211                             11112223


Q ss_pred             CEEEEEEccCCCEEE-EEeCCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CC--cEEEEECCCCc
Q 006220          423 PVYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQ  496 (656)
Q Consensus       423 ~V~~l~~spd~~~L~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg--~i~lwd~~~~~  496 (656)
                      .+....|+|||+.|+ +.+.+|  .|.+||+.++... .+..+........|+|+|..++..+. +|  .|+++++.+++
T Consensus       244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            445689999999876 454555  5888899876543 34445555667899999998877663 33  57778887776


Q ss_pred             eeEEecCCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC---Cc
Q 006220          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---GT  570 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d---g~  570 (656)
                      ..+.... ........|+|+|++|+..+.+ +  .|.+||+.+++... +. +........|+|+|++++..+.+   ..
T Consensus       323 ~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~  399 (430)
T PRK00178        323 AERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGV  399 (430)
T ss_pred             EEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence            5443322 2234457899999999887653 3  58899998876543 32 22233356899999988876643   35


Q ss_pred             EEEEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCE  600 (656)
Q Consensus       571 I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~  600 (656)
                      |.++++. |.....+..+.+.+...+|+|-
T Consensus       400 l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        400 LMLVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence            7777774 4444455555566777788763

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.9e-10  Score=125.76  Aligned_cols=200  Identities=17%  Similarity=0.144  Sum_probs=137.0

Q ss_pred             EeecCccCEEEEEEccCCCEEEEEeCC---CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEE-EECCC--cEEE
Q 006220          416 LYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDR--TARI  489 (656)
Q Consensus       416 ~l~~h~~~V~~l~~spd~~~L~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-gs~Dg--~i~l  489 (656)
                      .+..+...+.+.+|+|||+.|+..+.+   ..|.+|++.++.... +......+....|+|+|+.++. .+.+|  .|++
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~  271 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV  271 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence            344567789999999999998876643   369999998776533 2223344557899999998874 44455  5888


Q ss_pred             EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~  566 (656)
                      ||++++.... +..+........|+|+|+.|+..+. +|  .|+++|+.+++..+... .........|+|+|++|+..+
T Consensus       272 ~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~  349 (430)
T PRK00178        272 MDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVH  349 (430)
T ss_pred             EECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEE
Confidence            8998876543 4445556677899999998877654 33  58888888877544332 223344678999999998776


Q ss_pred             CC-C--cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC---CcEEEEeCCC
Q 006220          567 ED-G--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD---CTVKLWDVTT  620 (656)
Q Consensus       567 ~d-g--~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D---g~I~iWd~~~  620 (656)
                      .+ +  .|.+||+.++... .+. +........|+|+|+.++..+.+   ..|.++++..
T Consensus       350 ~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        350 RQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             ccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            43 3  5889999887542 232 22222356899999998877654   3466777743

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1.3e-10  Score=126.27  Aligned_cols=221  Identities=14%  Similarity=0.136  Sum_probs=139.6

Q ss_pred             CCCCeEEEEEcCCCCEEE---EEeCCCc--EEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          350 THNGLNCASISQDGSLVA---GGFSDSS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La---~g~~dg~--I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      ....+.+-+|||||+.++   +...+|.  |.+.++.+..                          ...   +....+..
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--------------------------~~~---lt~~~g~~  233 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--------------------------GKK---ILALQGNQ  233 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--------------------------ceE---eecCCCCc
Confidence            445567889999997532   4445554  5555554311                          112   22233445


Q ss_pred             EEEEEccCCCEEEEEeC-----CCeEEEEeccCC---ceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEE--ECC
Q 006220          425 YSASFSPLGDFILSSSA-----DTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIW--SMD  493 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~-----Dg~I~lwd~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lw--d~~  493 (656)
                      ...+|||||+.|+..+.     +..+.+|++..+   .......++.......+|+|+|..|+..+ .+|...+|  +++
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~  313 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID  313 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence            56899999998876543     223445776653   22233333333446789999999888766 46655555  443


Q ss_pred             C-CceeEEecCCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC--
Q 006220          494 R-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE--  567 (656)
Q Consensus       494 ~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~--  567 (656)
                      . +...+.+..+...+....|+|+|+.|+..+.+   ..|.+||+.+++..... .....+....|+|||++|+..+.  
T Consensus       314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~  392 (428)
T PRK01029        314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGNS  392 (428)
T ss_pred             ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECCC
Confidence            2 23344455455667889999999999876543   36999999988765443 33445678999999998875443  


Q ss_pred             -CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCC
Q 006220          568 -DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG  601 (656)
Q Consensus       568 -dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~  601 (656)
                       .+.|.+||+..++.. .+....+.+...+|+|-.
T Consensus       393 g~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        393 NESELYLISLITKKTR-KIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCceEEEEECCCCCEE-EeecCCCcccCceecCCC
Confidence             356889998776643 333344556778888753

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=3.1e-10  Score=123.16  Aligned_cols=202  Identities=17%  Similarity=0.152  Sum_probs=132.8

Q ss_pred             CccCEEEEEEccCCCE--E-EEEeCCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CC----cEEE
Q 006220          420 HSGPVYSASFSPLGDF--I-LSSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR----TARI  489 (656)
Q Consensus       420 h~~~V~~l~~spd~~~--L-~s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg----~i~l  489 (656)
                      ....+.+-.|||||+.  + ++...+|  .|.+.++.+++.... ....+.....+|+|||+.|+..+. +|    .+..
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            4456677899999974  2 2444443  577788887654332 223344556899999998887653 22    3444


Q ss_pred             EECCC---CceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEE--eCCC-CeeEEEEecCCCCeEEEEEcCCCCEE
Q 006220          490 WSMDR---IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLW--DVSS-GECVRIFIGHRSMILSLAMSPDGRYM  562 (656)
Q Consensus       490 wd~~~---~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iw--d~~~-~~~~~~~~~h~~~i~~l~~sp~g~~L  562 (656)
                      |++..   +.+.+...++.......+|+|+|+.|+..+ .+|...+|  ++.. +...+.+..+...+....|||||+.|
T Consensus       262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L  341 (428)
T PRK01029        262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI  341 (428)
T ss_pred             eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence            67664   233444433334456789999999888765 45655555  4432 33345555555677889999999988


Q ss_pred             EEEECC---CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCCc
Q 006220          563 ASGDED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA---DCTVKLWDVTTSTK  623 (656)
Q Consensus       563 ~s~~~d---g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~---Dg~I~iWd~~~~~~  623 (656)
                      +..+.+   ..|.+||+.+++.. .+......+.+..|+|||+.|+..+.   .+.|.+||+..++.
T Consensus       342 af~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        342 AFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             EEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            876543   46999999888654 33333345678999999998875443   35688899877654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=3.8e-10  Score=123.42  Aligned_cols=199  Identities=17%  Similarity=0.170  Sum_probs=131.9

Q ss_pred             EeecCccCEEEEEEccCCCEEEEEeCC---CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEE-EECCCc--EEE
Q 006220          416 LYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDRT--ARI  489 (656)
Q Consensus       416 ~l~~h~~~V~~l~~spd~~~L~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-gs~Dg~--i~l  489 (656)
                      .+..+...+.+..|+|||+.|+..+.+   ..|.+||+.+++... +...........|+|+|+.|+. .+.+|.  |++
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~  290 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV  290 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence            344566788999999999988866543   358889998776432 2222233446899999998765 456664  777


Q ss_pred             EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~  566 (656)
                      ||+.+++... +..+.......+|+|+|+.|+..+. ++  .|+++|+.+++..+.. .+.......+|+|||++|+..+
T Consensus       291 ~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~  368 (448)
T PRK04792        291 VDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVN  368 (448)
T ss_pred             EECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEE
Confidence            8888765443 4445556678899999998877654 33  5777788877755432 2223344578999999888765


Q ss_pred             C-CC--cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC-C--cEEEEeCC
Q 006220          567 E-DG--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-C--TVKLWDVT  619 (656)
Q Consensus       567 ~-dg--~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D-g--~I~iWd~~  619 (656)
                      . ++  .|.++|+.++... .+... .......|+|+|+.|+..+.+ |  .+.+++..
T Consensus       369 ~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        369 RTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             ecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            4 33  4666788777543 23222 122345799999988776644 3  36677764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=3.6e-11  Score=125.32  Aligned_cols=212  Identities=16%  Similarity=0.210  Sum_probs=159.7

Q ss_pred             ecCccCEEEEEEccCCCEE-EEEeCCCeEEEEeccCCcee---------EE-------------------eeCCC-----
Q 006220          418 QGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTKLNANL---------VC-------------------YKGHN-----  463 (656)
Q Consensus       418 ~~h~~~V~~l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~---------~~-------------------~~~h~-----  463 (656)
                      .+|+...+.|..+|||+++ ++|..--.|++||+..-...         ..                   +.-|.     
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h  127 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH  127 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence            4678888999999999986 56777888999997632110         00                   00110     


Q ss_pred             ------ccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          464 ------YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG  537 (656)
Q Consensus       464 ------~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~  537 (656)
                            ..-.+++++.-..-+++++....|+-++++.+.-+..+....+.+++|..++-..+|++|+.+|.|..||.++.
T Consensus       128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence                  11234445443344666666778999999999999999888899999999999999999999999999999987


Q ss_pred             eeEEEEe------cCCC-----CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-CCCccEEEEEEcCC--CCE
Q 006220          538 ECVRIFI------GHRS-----MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCE--GSL  603 (656)
Q Consensus       538 ~~~~~~~------~h~~-----~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~~--~~~  603 (656)
                      ..+..+.      .|.+     .|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.+.  +..
T Consensus       208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~  287 (703)
T KOG2321|consen  208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK  287 (703)
T ss_pred             hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence            7665543      2333     49999999999999999999999999999988775432 33468999999775  345


Q ss_pred             EEEEECCCcEEEEeCCCCCceeecccc
Q 006220          604 LASGSADCTVKLWDVTTSTKVLKTEEK  630 (656)
Q Consensus       604 l~sgs~Dg~I~iWd~~~~~~~~~~~~~  630 (656)
                      ++|. ....++|||-.+++.....+..
T Consensus       288 v~S~-Dk~~~kiWd~~~Gk~~asiEpt  313 (703)
T KOG2321|consen  288 VVSM-DKRILKIWDECTGKPMASIEPT  313 (703)
T ss_pred             EEec-chHHhhhcccccCCceeecccc
Confidence            5554 3458999999999988766554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.8e-10  Score=126.07  Aligned_cols=219  Identities=15%  Similarity=0.084  Sum_probs=141.4

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          348 INTHNGLNCASISQDGSLVAGGFS-DS--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~-dg--~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      ......+.+..|||||+.|+..+. ++  .|.+||+.+...                          ...   ....+..
T Consensus       214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--------------------------~~l---t~~~g~~  264 (448)
T PRK04792        214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--------------------------EKV---TSFPGIN  264 (448)
T ss_pred             ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--------------------------EEe---cCCCCCc
Confidence            344556789999999999987654 33  477777654211                          111   1112233


Q ss_pred             EEEEEccCCCEEEE-EeCCCe--EEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CC--cEEEEECCCCcee
Q 006220          425 YSASFSPLGDFILS-SSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQPL  498 (656)
Q Consensus       425 ~~l~~spd~~~L~s-~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg--~i~lwd~~~~~~~  498 (656)
                      ....|+|||+.|+. .+.+|.  |.+||+.+++. ..+..+.......+|+|+|+.++..+. ++  .|+++|+.+++..
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~  343 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS  343 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            46799999997764 556665  77778876654 334445555677899999998877663 33  5667788777654


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC--cEE
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-DG--TIM  572 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~-dg--~I~  572 (656)
                      +... ........+|+|+|++|+..+.+ +  .|.++|+.++.... +... .......|+|+|++|+..+. +|  .+.
T Consensus       344 ~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~  420 (448)
T PRK04792        344 RLTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA  420 (448)
T ss_pred             EEec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence            4322 22223457899999999876553 3  46667888776543 3322 12234589999998876553 33  377


Q ss_pred             EEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220          573 MWDLASGRCVTPLMGHTSCVWTLAYSCE  600 (656)
Q Consensus       573 iwD~~~~~~~~~~~~h~~~V~~l~~s~~  600 (656)
                      +++. +|.....+..+.+.+...+|+|-
T Consensus       421 ~~~~-~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        421 AVSI-DGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             EEEC-CCCceEECcCCCCCcCCCccCCC
Confidence            7786 56666667666667778888873

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1.8e-10  Score=120.23  Aligned_cols=111  Identities=18%  Similarity=0.346  Sum_probs=90.7

Q ss_pred             CCCeeEEEEcCCCCEEEE--EECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCCC
Q 006220          505 LSDVDCVRWHINCNYIAT--GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE---DGTIMMWDLASG  579 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~t--gs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~---dg~I~iwD~~~~  579 (656)
                      .++|.++.|+|+++-+++  |-.-.++.|||++ +.++..|  ..++-+++-|+|.|++|+.+|-   -|.|-|||+.+.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence            578999999999977655  6677899999975 5555544  4578889999999999988774   488999999998


Q ss_pred             eeeEeeeCCCccEEEEEEcCCCCEEEEEEC------CCcEEEEeCCC
Q 006220          580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSA------DCTVKLWDVTT  620 (656)
Q Consensus       580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~------Dg~I~iWd~~~  620 (656)
                      +++..+..-..  +-+.|+|||++++|++.      |+.++||+...
T Consensus       347 K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  347 KLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             hhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            88888765443  45789999999999874      68999999864

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.31  E-value=3.4e-10  Score=119.18  Aligned_cols=145  Identities=17%  Similarity=0.187  Sum_probs=127.0

Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEee--CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCee
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD  509 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~  509 (656)
                      +...++-|...|.|.+|++..++....+.  +|.++|.++.++.+-..|.+++.|+.+..|+......++.+.+....+.
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~  148 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS  148 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence            34468888999999999999888776665  5899999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC-----CCEEEEE-ECCCcEEEEeCCC
Q 006220          510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-----GRYMASG-DEDGTIMMWDLAS  578 (656)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~-----g~~L~s~-~~dg~I~iwD~~~  578 (656)
                      +++.+|+|..+++++  +.|.+||+.+++.+..|.||.++|.++.|-.+     |.++.++ ..+.-|.+|-+..
T Consensus       149 sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  149 SLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999999999986  68999999999999999999999999999876     6666654 4555677886543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.31  E-value=1.5e-10  Score=114.16  Aligned_cols=202  Identities=19%  Similarity=0.357  Sum_probs=152.8

Q ss_pred             eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (656)
Q Consensus       349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  428 (656)
                      ....+++++.++++...|.+|...|++.-+.+...-                        ......+.+..|.++|..+-
T Consensus        66 ~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf------------------------nkm~~~r~~~~h~~~v~~~i  121 (404)
T KOG1409|consen   66 YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF------------------------NKMTFLKDYLAHQARVSAIV  121 (404)
T ss_pred             hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh------------------------hhcchhhhhhhhhcceeeEE
Confidence            346779999999999999999999999988876411                        11223455678999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC--CCCceeEEecCCCC
Q 006220          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPLRIMAGHLS  506 (656)
Q Consensus       429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~--~~~~~~~~~~~~~~  506 (656)
                      |+-...++++++.|..+.---.+.+..+..|.-. .+..++.+.-.  +...|...|.+....+  ..-.++..+.+|.+
T Consensus       122 f~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~  198 (404)
T KOG1409|consen  122 FSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTG  198 (404)
T ss_pred             ecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCccc
Confidence            9999999999999987665555555444333211 11112222211  5566666676666554  34567788899999


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~  577 (656)
                      .+.+++|.|....+++|..|..|.+||+-..+- .....+|...|..+...+.-+.+.+++.||.|.+|+++
T Consensus       199 ~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  199 EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            999999999999999999999999999975443 34567899999999888888999999999999999975

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.31  E-value=1.2e-08  Score=102.28  Aligned_cols=252  Identities=12%  Similarity=0.190  Sum_probs=169.3

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~---dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      .....+..+=++|+|++++|-++-.   +|.|-.|.++...                        +..........-..+
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~------------------------G~Lt~ln~~~~~g~~   90 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD------------------------GRLTFLNRQTLPGSP   90 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC------------------------CeEEEeeccccCCCC
Confidence            4455667888999999998887754   5778888877421                        000111111111123


Q ss_pred             EEEEEEccCCCEEEEEeC-CCeEEEEeccCCceeE---EeeCCCcc----------EEEEEEecCCCEEEEEEC-CCcEE
Q 006220          424 VYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLV---CYKGHNYP----------VWDVQFNPQGHYFASSSH-DRTAR  488 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~-Dg~I~lwd~~~~~~~~---~~~~h~~~----------V~~l~~sp~~~~l~sgs~-Dg~i~  488 (656)
                      -+.+++++++++|+++.. -|.|.++-++....+.   ....|.++          +....+.|++++++++.- --.|.
T Consensus        91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~  170 (346)
T COG2706          91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF  170 (346)
T ss_pred             CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence            378999999999988875 5789999986532221   22234444          888999999999998872 34689


Q ss_pred             EEECCCCceeEEe---cCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCC-eeEEEEec---------CCCCeEEEE
Q 006220          489 IWSMDRIQPLRIM---AGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG-ECVRIFIG---------HRSMILSLA  554 (656)
Q Consensus       489 lwd~~~~~~~~~~---~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~-~~~~~~~~---------h~~~i~~l~  554 (656)
                      +|+++.++....-   .........|.|||++++.++.+ -+++|-+|..... ..+..++.         -......|.
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence            9999866533211   13345678899999999987766 4899999998873 22222221         124577899


Q ss_pred             EcCCCCEEEEEE-CCCcEEEEeCCC--Cee--eEeeeCCCccEEEEEEcCCCCEEEEEECC-CcEEEEeCCCCC
Q 006220          555 MSPDGRYMASGD-EDGTIMMWDLAS--GRC--VTPLMGHTSCVWTLAYSCEGSLLASGSAD-CTVKLWDVTTST  622 (656)
Q Consensus       555 ~sp~g~~L~s~~-~dg~I~iwD~~~--~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~D-g~I~iWd~~~~~  622 (656)
                      ++|||++|.++. ....|.+|.+..  +++  +.....+......+.|++.|++|+++..+ .+|.+|.+...+
T Consensus       251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            999999999875 234788887753  322  22222344456899999999999998865 468899886644

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.30  E-value=4.3e-11  Score=132.90  Aligned_cols=195  Identities=24%  Similarity=0.316  Sum_probs=152.8

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEE
Q 006220          357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI  436 (656)
Q Consensus       357 l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L  436 (656)
                      ..+.-+...++.++.+..+.+|+............                   . ....+    .+..-+-++++.-++
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-------------------~-er~~l----~~~~~~g~s~~~~~i  148 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS-------------------D-ERCTL----YSSLIIGDSAEELYI  148 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCC-------------------C-ceEEE----EeEEEEeccCcEEEE
Confidence            44556777889999999999999875221110000                   0 00000    112223456666789


Q ss_pred             EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE-EecCCCCCeeEEEEcC
Q 006220          437 LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHI  515 (656)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~-~~~~~~~~V~~v~~~p  515 (656)
                      ++|+.-+.|.+|+.........+.+|.+.|.++.|+.+|++++++|.|+++++|++++.+... ..-+|...|..+.|+|
T Consensus       149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~  228 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP  228 (967)
T ss_pred             EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc
Confidence            999999999999988444444688999999999999999999999999999999999987776 5568999999999999


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC-CeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          516 NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       516 ~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~-~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      +  .++|++.|.++++|+.. +..+..+.+|.+ .|..++..++...++|++.||.+++||+..
T Consensus       229 n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  229 N--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             c--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            8  99999999999999754 555557888865 689999999999999999999999999753

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=1.3e-09  Score=116.21  Aligned_cols=257  Identities=15%  Similarity=0.208  Sum_probs=171.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      .+..+.|++|+....++|+|+.||.++|..+.+........+             +...........+.||.+.|.-+.|
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------------laa~snLsmNQtLeGH~~sV~vvTW   79 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------------LAAASNLSMNQTLEGHNASVMVVTW   79 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------------cccccccchhhhhccCcceEEEEEe
Confidence            345689999999999999999999999999875322111111             0011112334568899999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeEEe--eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee---------
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL---------  498 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~---------  498 (656)
                      +...+.|-+...+|-|.+|-+-.+.-...+  ....+-|.+++|+.+|..++..-.||.|.+=.++.....         
T Consensus        80 Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l  159 (1189)
T KOG2041|consen   80 NENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLL  159 (1189)
T ss_pred             ccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhec
Confidence            999999999999999999987655432211  224566889999999988888777777665444321100         


Q ss_pred             -------------------------------------------EEecCCCCCeeEEEEc--------CCCCEEEEEECCC
Q 006220          499 -------------------------------------------RIMAGHLSDVDCVRWH--------INCNYIATGSSDK  527 (656)
Q Consensus       499 -------------------------------------------~~~~~~~~~V~~v~~~--------p~~~~l~tgs~dg  527 (656)
                                                                 ..+......+..+.|.        |+...++++-.+|
T Consensus       160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG  239 (1189)
T KOG2041|consen  160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG  239 (1189)
T ss_pred             cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence                                                       0011111123344443        4556677777777


Q ss_pred             cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC---------CcEEEEeCCCCeeeEeeeCCCccEEEEEEc
Q 006220          528 TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---------GTIMMWDLASGRCVTPLMGHTSCVWTLAYS  598 (656)
Q Consensus       528 ~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d---------g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s  598 (656)
                      .+.|..-.+......+. ..-.+..+.|+++|..|+.+|.+         +.|.+|. .-|+.+.+++.....|++++|-
T Consensus       240 r~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWE  317 (1189)
T KOG2041|consen  240 RMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWE  317 (1189)
T ss_pred             eehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEc
Confidence            77665443322222221 22567889999999999998854         3566665 4688888888888999999998


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCC
Q 006220          599 CEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       599 ~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ..|-.++.+ .|+.|.+=+++..-
T Consensus       318 g~gLriA~A-vdsfiyfanIRP~y  340 (1189)
T KOG2041|consen  318 GTGLRIAIA-VDSFIYFANIRPEY  340 (1189)
T ss_pred             CCceEEEEE-ecceEEEEeecccc
Confidence            766555544 57788877776543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.28  E-value=1.9e-09  Score=114.22  Aligned_cols=192  Identities=13%  Similarity=0.166  Sum_probs=138.8

Q ss_pred             EEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcC
Q 006220          436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI  515 (656)
Q Consensus       436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p  515 (656)
                      +++-..+|.|.+.|..+.+.+..+......-..+.|+|+|+++++++.||.|.++|+.+.+.+..+... ....++++++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~   87 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP   87 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC
Confidence            356667899999999999999998865544456789999999999999999999999999999888754 4568899999


Q ss_pred             CCCEEEEEE-CCCcEEEEeCCCCeeEEEEecC-------CCCeEEEEEcCCCCEEE-EEECCCcEEEEeCCCCeeeE-ee
Q 006220          516 NCNYIATGS-SDKTVRLWDVSSGECVRIFIGH-------RSMILSLAMSPDGRYMA-SGDEDGTIMMWDLASGRCVT-PL  585 (656)
Q Consensus       516 ~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h-------~~~i~~l~~sp~g~~L~-s~~~dg~I~iwD~~~~~~~~-~~  585 (656)
                      +|+++++++ .++.+.++|.++.+.++.+...       .+.+..|..+|.+..++ +.-+.+.|.+.|....+.+. ..
T Consensus        88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~  167 (369)
T PF02239_consen   88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT  167 (369)
T ss_dssp             TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred             CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence            999999876 6899999999999999877543       34678888899888554 44555889888987654332 22


Q ss_pred             eCCCccEEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCCceeecc
Q 006220          586 MGHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       586 ~~h~~~V~~l~~s~~~~~l~sg-s~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      ...........|+|++++++.+ ..++.|-++|..+.+......
T Consensus       168 i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  168 IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             ecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence            2334567789999999987665 466789999999887665443

...

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=2.8e-11  Score=139.84  Aligned_cols=197  Identities=15%  Similarity=0.274  Sum_probs=158.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      +-..|.|+.=+|...+-++|+.||.|++|.......                           .+..-......|+.+.|
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~---------------------------v~~~rt~g~s~vtr~~f 2259 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ---------------------------VVCFRTAGNSRVTRSRF 2259 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCe---------------------------EEEeeccCcchhhhhhh
Confidence            335688888889999999999999999999764211                           11111223388999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE---CCCcEEEEECCCC-ceeEEecCCC
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS---HDRTARIWSMDRI-QPLRIMAGHL  505 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs---~Dg~i~lwd~~~~-~~~~~~~~~~  505 (656)
                      +.+|+.+..+..||.+.+|.+. .......+.|+....++.|-.  ..+++++   .++.+.+||+--. ..-.+-..|.
T Consensus      2260 ~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred             cccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecC
Confidence            9999999999999999999988 666777888999999999975  6677775   5789999997532 1122226899


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      +.++++++-|..+.|++|+.+|.|.+||++..+..+.+..         +. ...++++|+..|.|+||++..-..++.+
T Consensus      2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence            9999999999999999999999999999998887776654         33 5679999999999999999887777666


Q ss_pred             e
Q 006220          586 M  586 (656)
Q Consensus       586 ~  586 (656)
                      .
T Consensus      2407 p 2407 (2439)
T KOG1064|consen 2407 P 2407 (2439)
T ss_pred             c
Confidence            4

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.22  E-value=5.3e-11  Score=137.66  Aligned_cols=197  Identities=20%  Similarity=0.359  Sum_probs=163.8

Q ss_pred             EeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCC
Q 006220          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (656)
Q Consensus       416 ~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~  494 (656)
                      ....|-..|.++.-+|...+.++|+.||.|++|....+..+.+++. .+..|+.+.|+.+|+.+..+..||.+.+|.+. 
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            3445567788899999999999999999999999998888887763 34789999999999999999999999999987 


Q ss_pred             CceeEEecCCCCCeeEEEEcCCCCEEEEEE---CCCcEEEEeCCCC---eeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs---~dg~V~iwd~~~~---~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      .++......|......+.|-.  ..+++++   .++.+.+||..-.   .++.  +.|.+.++++++.|..+.|++||.+
T Consensus      2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred             CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence            677777788888888888865  4566643   5689999997532   2344  7899999999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      |.|++||++..+..+.++.         +. ...++++|+..|.|+||++.....+...
T Consensus      2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence            9999999998887776654         44 5678999999999999999887555443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.22  E-value=3.5e-10  Score=111.43  Aligned_cols=228  Identities=22%  Similarity=0.340  Sum_probs=151.5

Q ss_pred             CCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCC----CccccCCCC---CceeeE-Eeec
Q 006220          350 THNGLNCASISQDGS--LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTP----REDIIGPNG---RKRSYT-LYQG  419 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~--~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~-~l~~  419 (656)
                      -...|+.+.|.++++  .+...+.|.+|++|.+....................    ......+-.   .....+ .-.+
T Consensus        83 ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa  162 (433)
T KOG1354|consen   83 IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA  162 (433)
T ss_pred             hhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc
Confidence            345688889988754  466677999999999986443331111111111100    000110000   001111 2346


Q ss_pred             CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc---eeEEeeCCC-----ccEEEEEEec-CCCEEEEEECCCcEEEE
Q 006220          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHN-----YPVWDVQFNP-QGHYFASSSHDRTARIW  490 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~-----~~V~~l~~sp-~~~~l~sgs~Dg~i~lw  490 (656)
                      |+-.|.+++++.|+..++++. |=.|.+|++.-..   .++-++.+.     .-|++..|+| ..+.|+-.+..|+|++.
T Consensus       163 HtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc  241 (433)
T KOG1354|consen  163 HTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC  241 (433)
T ss_pred             ceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence            889999999999999998875 5679999986332   244445443     3488889999 45678888899999999


Q ss_pred             ECCCCc----------------eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC-CCCeeEEEEecCCC-----
Q 006220          491 SMDRIQ----------------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV-SSGECVRIFIGHRS-----  548 (656)
Q Consensus       491 d~~~~~----------------~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~-~~~~~~~~~~~h~~-----  548 (656)
                      |++...                ....+.+-.+.|..+.|+++|+|+++-+. -+|.+||+ ...+++.+++-|..     
T Consensus       242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence            998421                11222334466889999999999988543 58999999 45677777765532     


Q ss_pred             -------Ce---EEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          549 -------MI---LSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       549 -------~i---~~l~~sp~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                             .|   ..++|+-++.+++||+..+..++++...|
T Consensus       321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                   12   34789988899999999999999996544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.22  E-value=1.2e-09  Score=105.83  Aligned_cols=196  Identities=20%  Similarity=0.258  Sum_probs=142.9

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCce--eEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCc-eeE
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ-PLR  499 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~-~~~  499 (656)
                      ..++.|++.+..++++..+|.+.+-+......  ++..+.|..++|...|+. +.+.+.+||.|+.+..||++..+ .+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            45788999999999999999999666554433  347889999999999987 45789999999999999999433 222


Q ss_pred             E-ecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCC--CCEEEEEECCCcEEEE
Q 006220          500 I-MAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPD--GRYMASGDEDGTIMMW  574 (656)
Q Consensus       500 ~-~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~--g~~L~s~~~dg~I~iw  574 (656)
                      . ...|...|.++.-+| .+.+|+||+.|-.|++||.|+ ++++..- .-.+.|..+.++|.  ++.|+++-..| .+|-
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~  281 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKIL  281 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEE
Confidence            2 346888999998885 678999999999999999994 5655432 23478999999994  34455554444 5555


Q ss_pred             eCCCC--e---eeEeeeCCCccEEEEEEcCCCCEEEEEE-CCCcEE-EEeCCCC
Q 006220          575 DLASG--R---CVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVK-LWDVTTS  621 (656)
Q Consensus       575 D~~~~--~---~~~~~~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~-iWd~~~~  621 (656)
                      +...+  +   .....+.|.+-++.-.|......|+|++ .|..++ +|-.-++
T Consensus       282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             EecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            65443  2   3344456777777788855556788876 566655 7765544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=2.2e-10  Score=117.59  Aligned_cols=215  Identities=23%  Similarity=0.329  Sum_probs=150.8

Q ss_pred             eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee-CCCccEEEEEEec--CCCEEEEEECCCcEEE
Q 006220          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNP--QGHYFASSSHDRTARI  489 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~l  489 (656)
                      ....+.+|.|.|..|.|+..|..|++||.|..|.+||...+.....+. +|...|....|-|  +...+++++.||.+++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            345678899999999999999999999999999999999888776664 6888898888988  4567999999999998


Q ss_pred             EECCCCcee---EEecCCCCCeeEEEEcCC--------------------------------------------------
Q 006220          490 WSMDRIQPL---RIMAGHLSDVDCVRWHIN--------------------------------------------------  516 (656)
Q Consensus       490 wd~~~~~~~---~~~~~~~~~V~~v~~~p~--------------------------------------------------  516 (656)
                      =.+.....+   ..+..|.++|.-++.-|.                                                  
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            776432222   122234444443333332                                                  


Q ss_pred             CCEEEEEECCCcEEEEeCCCCe------eEEEEecC------CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--C---
Q 006220          517 CNYIATGSSDKTVRLWDVSSGE------CVRIFIGH------RSMILSLAMSPDGRYMASGDEDGTIMMWDLAS--G---  579 (656)
Q Consensus       517 ~~~l~tgs~dg~V~iwd~~~~~------~~~~~~~h------~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~--~---  579 (656)
                      .+.+++|+.|-.+++||.+.-.      .+..|..|      ...|+|++|+.++.-|.++-.|-.|+++.-..  |   
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p  373 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP  373 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence            2345555556666666654311      11222222      23689999998888777777888899994322  2   


Q ss_pred             -------eeeEe-eeCCC--ccEEEEEE-cCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          580 -------RCVTP-LMGHT--SCVWTLAY-SCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       580 -------~~~~~-~~~h~--~~V~~l~~-s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                             ..+.. +++|.  ..|..+-| -|...++++|+.=|.|.||+-.+++-+.-.
T Consensus       374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M  432 (559)
T KOG1334|consen  374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM  432 (559)
T ss_pred             CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh
Confidence                   22333 67886  35666664 788899999999999999999887765544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.19  E-value=1.6e-08  Score=120.65  Aligned_cols=252  Identities=15%  Similarity=0.192  Sum_probs=162.6

Q ss_pred             EEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          355 NCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       355 ~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      ..++++++ +.++++-+.++.|++||...........  .+....        .++..     -.++-....++++++++
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~--~g~~G~--------~dG~~-----~~a~f~~P~GIavd~~g  635 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS--TGEEGL--------RDGSF-----EDATFNRPQGLAYNAKK  635 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc--CCCcCC--------CCCch-----hccccCCCcEEEEeCCC
Confidence            35688874 6677777788999999976421111000  000000        00000     00122345789999988


Q ss_pred             CEEEEEe-CCCeEEEEeccCCceeEEeeCC-----------------CccEEEEEEec-CCCEEEEEECCCcEEEEECCC
Q 006220          434 DFILSSS-ADTTIRLWSTKLNANLVCYKGH-----------------NYPVWDVQFNP-QGHYFASSSHDRTARIWSMDR  494 (656)
Q Consensus       434 ~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h-----------------~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~  494 (656)
                      ..|+.+. ..+.|+++|..++. +..+.+.                 -..-++++++| ++..+++.+.++.|++||..+
T Consensus       636 n~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~  714 (1057)
T PLN02919        636 NLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD  714 (1057)
T ss_pred             CEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC
Confidence            8665554 45789999987654 3322110                 11236899999 566667777889999999877


Q ss_pred             CceeEEecCC---------------CCCeeEEEEcCCCCEEE-EEECCCcEEEEeCCCCeeEEEEec-------------
Q 006220          495 IQPLRIMAGH---------------LSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGECVRIFIG-------------  545 (656)
Q Consensus       495 ~~~~~~~~~~---------------~~~V~~v~~~p~~~~l~-tgs~dg~V~iwd~~~~~~~~~~~~-------------  545 (656)
                      +... .+.+.               ......++++|++.+|+ +.+.++.|++||+.++.......+             
T Consensus       715 g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~  793 (1057)
T PLN02919        715 GVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD  793 (1057)
T ss_pred             CeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence            6432 22211               12356799999998555 455678999999987653211100             


Q ss_pred             C--------CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-C------------CCccEEEEEEcCCCCEE
Q 006220          546 H--------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-G------------HTSCVWTLAYSCEGSLL  604 (656)
Q Consensus       546 h--------~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-~------------h~~~V~~l~~s~~~~~l  604 (656)
                      +        -.....++++++|..+++-+.++.|++||..++....... +            .-.....++++++|+++
T Consensus       794 ~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly  873 (1057)
T PLN02919        794 HDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF  873 (1057)
T ss_pred             CCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence            0        0123578999999988888899999999998776543221 1            11246789999999999


Q ss_pred             EEEECCCcEEEEeCCCCCc
Q 006220          605 ASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       605 ~sgs~Dg~I~iWd~~~~~~  623 (656)
                      ++-+.++.|++||+.++..
T Consensus       874 VaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        874 VADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEECCCCEEEEEECCCCcc
Confidence            9999999999999988764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.19  E-value=2.4e-09  Score=103.70  Aligned_cols=201  Identities=17%  Similarity=0.211  Sum_probs=144.1

Q ss_pred             ccCEEEEEEcc---CCC-EEEEEeCCCeEEEEeccCCceeEEeeCCC------ccEEEEEEecCCCEEEEEECCCcEEEE
Q 006220          421 SGPVYSASFSP---LGD-FILSSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSSHDRTARIW  490 (656)
Q Consensus       421 ~~~V~~l~~sp---d~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~l~~sp~~~~l~sgs~Dg~i~lw  490 (656)
                      ++.+..+.|.-   +|. .++-+..+|.|.++..........+++-.      ....++.|++.+..++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            34566677753   344 46677778999999877555444444321      124578899999999999999999966


Q ss_pred             ECCCCce--eEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCC-CCeeEEE-EecCCCCeEEEEEcC-CCCEEEE
Q 006220          491 SMDRIQP--LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGECVRI-FIGHRSMILSLAMSP-DGRYMAS  564 (656)
Q Consensus       491 d~~~~~~--~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~-~~~~~~~-~~~h~~~i~~l~~sp-~g~~L~s  564 (656)
                      +......  +....+|.-......|+. +.+.+++|+.|+.+..||+| .++.+.. .+-|...|.+|.-+| .+.+|++
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence            6554433  347778999999999885 44788999999999999999 4444433 456888999999887 5779999


Q ss_pred             EECCCcEEEEeCC-CCeeeEeeeCCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCC
Q 006220          565 GDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       565 ~~~dg~I~iwD~~-~~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      |+.|-.|++||.+ .++++..- ...+.|+.+.++|.-. .|..++.-+-.+|-++....
T Consensus       229 GsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~  287 (339)
T KOG0280|consen  229 GSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV  287 (339)
T ss_pred             eccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence            9999999999998 45666543 3348999999999432 33334444446666665543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.17  E-value=5.7e-11  Score=122.86  Aligned_cols=208  Identities=22%  Similarity=0.323  Sum_probs=155.4

Q ss_pred             eeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEecc-------CCceeEEeeCCCccEEEEEEecCCCEEEEEECC
Q 006220          412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-------LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (656)
Q Consensus       412 ~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~-------~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D  484 (656)
                      .....+.||+..|..+.--.+.+.+++++.|.+|++|+++       +..|..+|..|..+|.++-|-.+.++++++  |
T Consensus       726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D  803 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D  803 (1034)
T ss_pred             eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence            3456688999999988877777889999999999999986       334778899999999999999988888765  8


Q ss_pred             CcEEEEECCCCceeEEec--CCCCCeeEEEEcCC--CCEEEEE-ECCCcEEEEeCCCCeeEEEEe-----cCCCCeEEEE
Q 006220          485 RTARIWSMDRIQPLRIMA--GHLSDVDCVRWHIN--CNYIATG-SSDKTVRLWDVSSGECVRIFI-----GHRSMILSLA  554 (656)
Q Consensus       485 g~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~--~~~l~tg-s~dg~V~iwd~~~~~~~~~~~-----~h~~~i~~l~  554 (656)
                      |-|++||.-.+.++..+.  ...+.+..+..-++  ...+++| +...+|+++|.+.++.+..++     +..+.+.+++
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            899999976666554322  12233333433343  3344444 678999999999987665554     3345688999


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEE-EeCCCCC
Q 006220          555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL-WDVTTST  622 (656)
Q Consensus       555 ~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i-Wd~~~~~  622 (656)
                      ..+.|++++++-..|.|.+.|.++|+.+..++.-......++ .|..+.|+....|.++.| |-.-.+.
T Consensus       884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence            999999999999999999999999998887764433333333 355567777777888877 7765544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.16  E-value=1.1e-09  Score=106.42  Aligned_cols=245  Identities=20%  Similarity=0.354  Sum_probs=168.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc---------
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS---------  421 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~---------  421 (656)
                      ...|+++.|...|.|||+|...|.|.+|.-.... .                      ...+..+.+++|.         
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~----------------------ceykf~teFQshe~EFDYLkSl   82 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-G----------------------CEYKFFTEFQSHELEFDYLKSL   82 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeeccccc-c----------------------cchhhhhhhcccccchhhhhhc
Confidence            3469999999999999999989999999865321 0                      0011122233332         


Q ss_pred             ---cCEEEEEEccCCC--EEEEEeCCCeEEEEeccCC------------------c-e------------------e---
Q 006220          422 ---GPVYSASFSPLGD--FILSSSADTTIRLWSTKLN------------------A-N------------------L---  456 (656)
Q Consensus       422 ---~~V~~l~~spd~~--~L~s~s~Dg~I~lwd~~~~------------------~-~------------------~---  456 (656)
                         ..|..+.|..++.  .++..+.|.+|++|.+...                  . .                  +   
T Consensus        83 eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~  162 (460)
T COG5170          83 EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK  162 (460)
T ss_pred             cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec
Confidence               4577888876553  5667778999999986421                  0 0                  0   


Q ss_pred             --EEe-eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce---eEEecCCC-----CCeeEEEEcCC-CCEEEEEE
Q 006220          457 --VCY-KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAGHL-----SDVDCVRWHIN-CNYIATGS  524 (656)
Q Consensus       457 --~~~-~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~---~~~~~~~~-----~~V~~v~~~p~-~~~l~tgs  524 (656)
                        +.+ ..|...|.++.|+.+...++++ .|-.|.+|+++-...   +.-+..|.     .-|++..|||. .+.+.-.+
T Consensus       163 p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs  241 (460)
T COG5170         163 PCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS  241 (460)
T ss_pred             cceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence              112 3577889999999888877776 467899999864332   22223332     34788999984 56667788


Q ss_pred             CCCcEEEEeCCCCeeE----------------EEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeeEeeeC
Q 006220          525 SDKTVRLWDVSSGECV----------------RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMG  587 (656)
Q Consensus       525 ~dg~V~iwd~~~~~~~----------------~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~-~~~~~~~~  587 (656)
                      +.|.|.+-|++.....                .-|.+-...|..+.|+++|+++++-+. -+|+|||.+.. .+++++.-
T Consensus       242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~  320 (460)
T COG5170         242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM  320 (460)
T ss_pred             CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech
Confidence            8999999999843211                112233457888999999999998765 58999999764 46666644


Q ss_pred             CC------------ccE---EEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          588 HT------------SCV---WTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       588 h~------------~~V---~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      |.            ..|   ..+.||.|...+.+|+..+..-|+-+.+
T Consensus       321 h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         321 HCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             HHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence            42            233   3478899999999999998888887544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.16  E-value=1.3e-09  Score=107.58  Aligned_cols=249  Identities=17%  Similarity=0.278  Sum_probs=182.8

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      +.++.+.|+....-|...-+.+.+.|.+++||--....+                          ........-..++++
T Consensus        20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q--------------------------~wpsI~~~mP~~~~~   73 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ--------------------------YWPSIYHYMPSPCSA   73 (404)
T ss_pred             hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccc--------------------------cCchhhhhCCCCceE
Confidence            345566677777777777788999999999996443111                          011112234578899


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEecc----CCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220          427 ASFSPLGDFILSSSADTTIRLWSTK----LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       427 l~~spd~~~L~s~s~Dg~I~lwd~~----~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~  502 (656)
                      ++++++...|+.|-..|++.-+.+.    ....++.+..|..+|..+.|+-....+++.+.|..+.---.+.+..+..+.
T Consensus        74 ~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~  153 (404)
T KOG1409|consen   74 MEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN  153 (404)
T ss_pred             eeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE
Confidence            9999999999999999999988764    334456677899999999999988999999998876554455544432221


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC--CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDV--SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~--~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~  580 (656)
                      -. ..-++..+.-.  +.+.|...|.|.+-.+  ..-..+..+.+|.+++++++|.|..+.|++|..|..|.+||+.-.+
T Consensus       154 ~~-~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~  230 (404)
T KOG1409|consen  154 FE-TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK  230 (404)
T ss_pred             ee-ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc
Confidence            00 11111122111  5566767777666544  4456788899999999999999999999999999999999996544


Q ss_pred             -eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          581 -CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       581 -~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                       ....+.+|...|..+..-+--+.+++++.||.|.+|+++.....
T Consensus       231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE  275 (404)
T ss_pred             ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence             33456789999999988888889999999999999999875443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.16  E-value=1.5e-07  Score=99.60  Aligned_cols=200  Identities=14%  Similarity=0.197  Sum_probs=135.9

Q ss_pred             ccCEEEEEEccCCCEEEEEeC----CCeEEEEeccCC--c--eeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEE
Q 006220          421 SGPVYSASFSPLGDFILSSSA----DTTIRLWSTKLN--A--NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWS  491 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~----Dg~I~lwd~~~~--~--~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd  491 (656)
                      ......++++|++++|+++..    +|.|..|++...  .  .+..........+.++++|++.+++++. .+|++.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            344567889999999988877    578999998864  2  2233332344556799999999999987 589999999


Q ss_pred             CCCC-ceeEE---ec----------CCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCe--eE--EEEe-cCCCCeE
Q 006220          492 MDRI-QPLRI---MA----------GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGE--CV--RIFI-GHRSMIL  551 (656)
Q Consensus       492 ~~~~-~~~~~---~~----------~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~~~--~~--~~~~-~h~~~i~  551 (656)
                      ++.. .....   +.          .......++.|+|+++++++... ...|++|++....  ..  ..+. .......
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            9863 32221   21          12345789999999999888653 3579999997654  32  2222 3345678


Q ss_pred             EEEEcCCCCEEEEEE-CCCcEEEEeCC--CCe--eeEeeeC----CC--ccEEEEEEcCCCCEEEEEE-CCCcEEEEeCC
Q 006220          552 SLAMSPDGRYMASGD-EDGTIMMWDLA--SGR--CVTPLMG----HT--SCVWTLAYSCEGSLLASGS-ADCTVKLWDVT  619 (656)
Q Consensus       552 ~l~~sp~g~~L~s~~-~dg~I~iwD~~--~~~--~~~~~~~----h~--~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~  619 (656)
                      .++|+|+|+++++.. .++.|.++++.  .+.  .+..+..    ..  .....+.++|||++|.++. .+++|.+|++.
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            899999999887665 57789999988  442  2222221    11  2578899999999887765 56789999995


Q ss_pred             C
Q 006220          620 T  620 (656)
Q Consensus       620 ~  620 (656)
                      .
T Consensus       276 ~  276 (345)
T PF10282_consen  276 P  276 (345)
T ss_dssp             T
T ss_pred             c
Confidence            4

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.10  E-value=3.4e-10  Score=117.23  Aligned_cols=254  Identities=15%  Similarity=0.227  Sum_probs=178.9

Q ss_pred             CCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220          338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (656)
Q Consensus       338 ~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  417 (656)
                      ....+....|.+|.+.|..++--.+.+-+++++.|.+|++|++...+...                     +......++
T Consensus       722 n~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~---------------------~tsaCQfTY  780 (1034)
T KOG4190|consen  722 NFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI---------------------GTSACQFTY  780 (1034)
T ss_pred             ccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc---------------------ccceeeeEh
Confidence            44556667788999999998877777888999999999999997522110                     112244567


Q ss_pred             ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC--CCccEEEEEEec--CCCEEEE-EECCCcEEEEEC
Q 006220          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNP--QGHYFAS-SSHDRTARIWSM  492 (656)
Q Consensus       418 ~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp--~~~~l~s-gs~Dg~i~lwd~  492 (656)
                      ..|..+|.++.|-.+.++++++  ||.|.+||.-.++.+.....  ..+.+..+..-+  +...++. |+...+++++|.
T Consensus       781 ~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da  858 (1034)
T KOG4190|consen  781 QAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDA  858 (1034)
T ss_pred             hhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeec
Confidence            8999999999999988888766  78899999876666543211  112222233323  3444444 478899999999


Q ss_pred             CCCceeEEec-----CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          493 DRIQPLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       493 ~~~~~~~~~~-----~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      +.......+.     +...-+.|++..+.|+.+++|-++|+|.+.|.++|+.+..+.........++ .|..+.|+....
T Consensus       859 Rsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal  937 (1034)
T KOG4190|consen  859 RSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL  937 (1034)
T ss_pred             ccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc
Confidence            8876554443     4446689999999999999999999999999999999988877666555555 466678888888


Q ss_pred             CCcEEE-EeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          568 DGTIMM-WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       568 dg~I~i-wD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      |.++.+ |-.-.|....+.+....+..-+  -.-|..|+++...+.+.||.
T Consensus       938 dHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  938 DHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             cceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence            999998 9877665554444322221111  11245567776666677765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.09  E-value=2.7e-07  Score=95.94  Aligned_cols=243  Identities=12%  Similarity=0.053  Sum_probs=151.9

Q ss_pred             EcCCCCEEEEEeC----------CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220          359 ISQDGSLVAGGFS----------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (656)
Q Consensus       359 fs~dg~~La~g~~----------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  428 (656)
                      +||||+.|.++..          +..|.|||..+...........               ..    +..  .......++
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~---------------~p----~~~--~~~~~~~~~  111 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE---------------GP----RFL--VGTYPWMTS  111 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC---------------Cc----hhh--ccCccceEE
Confidence            9999998887755          7889999998743322111000               00    000  112234688


Q ss_pred             EccCCCEEEEEe-C-CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE-----Ee
Q 006220          429 FSPLGDFILSSS-A-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-----IM  501 (656)
Q Consensus       429 ~spd~~~L~s~s-~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~-----~~  501 (656)
                      ++|||++|+... . +..|.+.|+.+++.+..+.... +..-...++...+  +-+.||......++......     .+
T Consensus       112 ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf  188 (352)
T TIGR02658       112 LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVF  188 (352)
T ss_pred             ECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeee
Confidence            999999988766 3 6899999999999888776422 2222333322222  22345555444333211111     11


Q ss_pred             cCCCCCeeE-EEEcC-CCCEEEEEECCCcEEEEeCCCC-----eeEEEEec-------CCCCeEEEEEcCCCCEEEEEE-
Q 006220          502 AGHLSDVDC-VRWHI-NCNYIATGSSDKTVRLWDVSSG-----ECVRIFIG-------HRSMILSLAMSPDGRYMASGD-  566 (656)
Q Consensus       502 ~~~~~~V~~-v~~~p-~~~~l~tgs~dg~V~iwd~~~~-----~~~~~~~~-------h~~~i~~l~~sp~g~~L~s~~-  566 (656)
                      .+....+.. -.|.+ +|.++++... |+|.+.|+...     .....+..       ..+.+.-++++|+|+.+++.. 
T Consensus       189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~  267 (352)
T TIGR02658       189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD  267 (352)
T ss_pred             cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence            110000000 03345 7888877776 99999996433     33333221       223344599999999888742 


Q ss_pred             ---------CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCCceeec
Q 006220          567 ---------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       567 ---------~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs-~Dg~I~iWd~~~~~~~~~~  627 (656)
                               ..+.|.++|..+++.+..+.. ...+++++++||++ +|++.. .++.|.+.|+.+++.+...
T Consensus       268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       268 QRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence                     225799999999999998864 34789999999999 777666 6788999999998877654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=2.6e-08  Score=104.47  Aligned_cols=218  Identities=19%  Similarity=0.294  Sum_probs=147.3

Q ss_pred             CCCCeEEEEEcCC--CCEEEE-----EeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          350 THNGLNCASISQD--GSLVAG-----GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       350 ~~~~V~~l~fs~d--g~~La~-----g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      |..+|+.+.+||.  -..+|+     ++.-+.|+||.+.........                       ..+.+  ...
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~-----------------------a~ksF--Fka  218 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV-----------------------ANKSF--FKA  218 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-----------------------hhccc--ccc
Confidence            3567999999986  334554     345567999987632111100                       00000  011


Q ss_pred             CEEEEEEccCCCE-EEEEeC--C---------CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE--CCCcEE
Q 006220          423 PVYSASFSPLGDF-ILSSSA--D---------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTAR  488 (656)
Q Consensus       423 ~V~~l~~spd~~~-L~s~s~--D---------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs--~Dg~i~  488 (656)
                      .=..+.|++-|.- |+.++.  |         .++++.+++...+...+. ..+||.++.|+|++.-|+++-  .-..+.
T Consensus       219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvt  297 (566)
T KOG2315|consen  219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVT  297 (566)
T ss_pred             ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEE
Confidence            1235678776663 222222  2         468888888444444443 478999999999998876653  567899


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~  565 (656)
                      ++|++. .++..+  ..++-+++-|+|.|++|+.++-   .|.|.+||+.+.+++..+...  ..+-..|+|||.+++|+
T Consensus       298 ifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTA  372 (566)
T KOG2315|consen  298 IFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTA  372 (566)
T ss_pred             EEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEE
Confidence            999864 455554  3567789999999999988764   489999999998888877653  34568999999999998


Q ss_pred             EC------CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220          566 DE------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE  600 (656)
Q Consensus       566 ~~------dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~  600 (656)
                      +.      |+.++||+. +|..+....-.+ ..+.+.|-|.
T Consensus       373 TTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P~  411 (566)
T KOG2315|consen  373 TTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRPF  411 (566)
T ss_pred             eccccEEecCCeEEEEe-cCceeehhhhhH-hHhheeeeec
Confidence            73      688999998 677665433222 5677888763

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.06  E-value=5.8e-08  Score=100.70  Aligned_cols=285  Identities=16%  Similarity=0.171  Sum_probs=177.3

Q ss_pred             cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCc---------------EEEEEcCCCCcccccccCCC
Q 006220          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSS---------------LKVWDMAKLGQQAVSSGLQG  394 (656)
Q Consensus       330 ~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~---------------I~Iwdl~~~~~~~~~~~~~~  394 (656)
                      ..|.+|....-..+  ..+. +..|.-+.|||.++||.+=+..+.               +.|||...+...........
T Consensus        53 ~~V~~~~g~~~~~l--~~~~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q  129 (561)
T COG5354          53 AGVECWGGPSKAKL--VRFR-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ  129 (561)
T ss_pred             cceEEccccchhhe--eeee-cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCC
Confidence            45566654333322  2222 346999999999999998765443               89999876543322211111


Q ss_pred             C--CCCCCC---ccccCCCCCceeeEEee------c------CccCEEEEEEccCCC--EEEE-----EeCCCeEEEEec
Q 006220          395 E--NDTTPR---EDIIGPNGRKRSYTLYQ------G------HSGPVYSASFSPLGD--FILS-----SSADTTIRLWST  450 (656)
Q Consensus       395 ~--~~~~~~---~~~~~~~~~~~~~~~l~------~------h~~~V~~l~~spd~~--~L~s-----~s~Dg~I~lwd~  450 (656)
                      .  .+....   .+.+.....+..+....      .      ....|...+|+|.++  .|+.     ....+++++|.+
T Consensus       130 ~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sI  209 (561)
T COG5354         130 PYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSI  209 (561)
T ss_pred             cccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEc
Confidence            0  000000   00000000000000000      0      125678888998643  3442     456789999999


Q ss_pred             cCCceeEEeeCCCccEEEEEEecCCCEEEEEE-----------CCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCE
Q 006220          451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-----------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY  519 (656)
Q Consensus       451 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-----------~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~  519 (656)
                      ..+..+..-.-....-..+.|.+.|.++++--           ....++++++... .++...+..++|..++|.|.++.
T Consensus       210 p~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~  288 (561)
T COG5354         210 PKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSR  288 (561)
T ss_pred             cCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCc
Confidence            87766654333333345788999998876532           1256888888743 33333356789999999998887


Q ss_pred             EEEE--ECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeeE-eeeCCCccEE
Q 006220          520 IATG--SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---GTIMMWDLASGRCVT-PLMGHTSCVW  593 (656)
Q Consensus       520 l~tg--s~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d---g~I~iwD~~~~~~~~-~~~~h~~~V~  593 (656)
                      +++.  -.+..+.++|++.. ..  +......=..+.|||.+++++.++-|   |.|.+||......+. .+.+..  ..
T Consensus       289 F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s  363 (561)
T COG5354         289 FAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TS  363 (561)
T ss_pred             eeEEecccccceeecccccc-eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ce
Confidence            7664  47889999999866 33  33344556678999999999997754   789999987654444 554433  34


Q ss_pred             EEEEcCCCCEEEEEE------CCCcEEEEeCCCCCc
Q 006220          594 TLAYSCEGSLLASGS------ADCTVKLWDVTTSTK  623 (656)
Q Consensus       594 ~l~~s~~~~~l~sgs------~Dg~I~iWd~~~~~~  623 (656)
                      -+.|+||++++.+..      .|+.|.|||+.....
T Consensus       364 ~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         364 YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             EeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence            567999999887764      478999999976544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.06  E-value=1.2e-07  Score=111.22  Aligned_cols=239  Identities=14%  Similarity=0.185  Sum_probs=159.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      .+.|.++.|-++..-++.+..+|.|.+.......                         ..........-.+.|.+++||
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~-------------------------~~~~~E~VG~vd~GI~a~~WS  129 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDP-------------------------DEDEIEIVGSVDSGILAASWS  129 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCC-------------------------CCceeEEEEEEcCcEEEEEEC
Confidence            4579999999999999999999999998443200                         011122222335789999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCcee------------------------EEeeC------------------------C
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANL------------------------VCYKG------------------------H  462 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~------------------------~~~~~------------------------h  462 (656)
                      ||+..|+..+.++++.+.+.+ ...+                        ..|+|                        +
T Consensus       130 PD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~  208 (928)
T PF04762_consen  130 PDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSW  208 (928)
T ss_pred             CCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcccc
Confidence            999999999999998886422 1100                        01111                        1


Q ss_pred             CccEEEEEEecCCCEEEEEEC------CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEe
Q 006220          463 NYPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWD  533 (656)
Q Consensus       463 ~~~V~~l~~sp~~~~l~sgs~------Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~V~iwd  533 (656)
                      ...-..|+|-.||.|||+.+-      -+.+++|+-+ +.....-..-.+--.+++|.|+|++||+...   ...|.+|.
T Consensus       209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence            223456889999999999874      2689999976 4333332222333457899999999998764   34677776


Q ss_pred             CCCCeeEEEEe----cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee--EeeeC-CCccEEEEEEcCC-CCEEE
Q 006220          534 VSSGECVRIFI----GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV--TPLMG-HTSCVWTLAYSCE-GSLLA  605 (656)
Q Consensus       534 ~~~~~~~~~~~----~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~--~~~~~-h~~~V~~l~~s~~-~~~l~  605 (656)
                       ++|-.-..|.    .....|..+.|++|+..||....|. |.+|-..+..-.  ..+.. ....+..+.|+|. ...|.
T Consensus       288 -rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~  365 (928)
T PF04762_consen  288 -RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH  365 (928)
T ss_pred             -cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence             4554444443    3356799999999999999987665 999998776522  22222 2234555999995 44577


Q ss_pred             EEECCCcEEEEeC
Q 006220          606 SGSADCTVKLWDV  618 (656)
Q Consensus       606 sgs~Dg~I~iWd~  618 (656)
                      .++.+|.+.++++
T Consensus       366 v~t~~g~~~~~~~  378 (928)
T PF04762_consen  366 VLTSNGQYEIYDF  378 (928)
T ss_pred             EEecCCcEEEEEE
Confidence            7777677655443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.05  E-value=2.2e-09  Score=114.96  Aligned_cols=245  Identities=19%  Similarity=0.285  Sum_probs=173.4

Q ss_pred             CCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          352 NGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       352 ~~V~~l~fs~d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      -.|-...|||.  -.+-++.+....-.||++....                         ....--.+.||+..|+.+.|
T Consensus        68 w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss-------------------------~~aIef~lhghsraitd~n~  122 (1081)
T KOG0309|consen   68 WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS-------------------------SNAIEFVLHGHSRAITDINF  122 (1081)
T ss_pred             chhcceecccCCCCceeEEecCcchhhhhhhhcCC-------------------------ccceEEEEecCccceecccc
Confidence            34778888875  3455555566666789886411                         12234567899999999999


Q ss_pred             ccCCC-EEEEEeCCCeEEEEeccCCce-eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecCCCC
Q 006220          430 SPLGD-FILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLS  506 (656)
Q Consensus       430 spd~~-~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~~~~  506 (656)
                      +|... .+++++.|..+..||+++... +..+..-......+.|+-....+.+.++.+.|++||++.+ .++..+.+|..
T Consensus       123 ~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs  202 (1081)
T KOG0309|consen  123 NPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS  202 (1081)
T ss_pred             CCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccce
Confidence            99775 788999999999999987543 3344444455678999886666777778889999999865 57778889999


Q ss_pred             CeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEE-EEecCCCCeEEEEEcCCCC--EEEEEECCCcEEEEeCC-----
Q 006220          507 DVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLA-----  577 (656)
Q Consensus       507 ~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~-~~~~h~~~i~~l~~sp~g~--~L~s~~~dg~I~iwD~~-----  577 (656)
                      .|+.++|.. ....+.+.+.||+|..||........ .......+|..-.+-|-|.  ++.-.-.+..+.+++.+     
T Consensus       203 ~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e  282 (1081)
T KOG0309|consen  203 SVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE  282 (1081)
T ss_pred             eeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhh
Confidence            999999875 34567889999999999987543221 1223445677777777443  33322222344444432     


Q ss_pred             -----CCeeeEeeeCCCccEEEEEEcCCC----------CEEEEEECCCcEEEEeCCCC
Q 006220          578 -----SGRCVTPLMGHTSCVWTLAYSCEG----------SLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       578 -----~~~~~~~~~~h~~~V~~l~~s~~~----------~~l~sgs~Dg~I~iWd~~~~  621 (656)
                           ..++++++.||...|..+.|-..+          -.|+|-+.|.++++|-+.+.
T Consensus       283 ~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  283 WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             hccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence                 246789999999988877774422          26999999999999998753

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.04  E-value=2.3e-07  Score=90.49  Aligned_cols=232  Identities=13%  Similarity=0.145  Sum_probs=138.8

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEE
Q 006220          357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI  436 (656)
Q Consensus       357 l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L  436 (656)
                      ++.+.||++||+- +|..|.|=.....-...                       ...+.........=..++||||+.+|
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si-----------------------~~kcqVpkD~~PQWRkl~WSpD~tlL   58 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSI-----------------------IGKCQVPKDPNPQWRKLAWSPDCTLL   58 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchhe-----------------------eEEEecCCCCCchheEEEECCCCcEE
Confidence            5678899999887 88888887755311000                       01111122222234568999999999


Q ss_pred             EEEeCCCeEEEEeccCCceeEEeeC-------CCccEEEEEEecC------CCEEEEEECCCcEEEEECCC-----Ccee
Q 006220          437 LSSSADTTIRLWSTKLNANLVCYKG-------HNYPVWDVQFNPQ------GHYFASSSHDRTARIWSMDR-----IQPL  498 (656)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~~~~~~~~~-------h~~~V~~l~~sp~------~~~l~sgs~Dg~i~lwd~~~-----~~~~  498 (656)
                      +.+...|+|+++|+.. ..+..+..       -..+|.++.|.+.      ...|++-..+|.++-|-+..     .+..
T Consensus        59 a~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~  137 (282)
T PF15492_consen   59 AYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQEN  137 (282)
T ss_pred             EEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceee
Confidence            9999999999999984 44433332       2356777777653      22466777788887776522     2222


Q ss_pred             EEec---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEE---cCCCCEEEEEECCC---
Q 006220          499 RIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM---SPDGRYMASGDEDG---  569 (656)
Q Consensus       499 ~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~---sp~g~~L~s~~~dg---  569 (656)
                      ..+.   .+...|.++.|+|..+.|++|+....      ..+..    ++....+++-..   +|..+.+ +...|+   
T Consensus       138 hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s----~a~~~GLtaWRiL~~~Pyyk~v-~~~~~~~~~  206 (282)
T PF15492_consen  138 HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGMS----KASSCGLTAWRILSDSPYYKQV-TSSEDDITA  206 (282)
T ss_pred             EEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCccc----cccccCceEEEEcCCCCcEEEc-cccCccccc
Confidence            3333   34678999999999999888775422      00000    011111222111   1111111 111111   


Q ss_pred             ---cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          570 ---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       570 ---~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                         +-.+|.+-+.+...........|..+..||||+.||+...+|.|.+|++.+-...
T Consensus       207 ~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  207 SSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             cccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence               1234444433333222234578999999999999999999999999999886544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.02  E-value=1.5e-07  Score=110.50  Aligned_cols=270  Identities=17%  Similarity=0.166  Sum_probs=163.1

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC--cccccccCCCCCC-----CCCCccccC-CCCCc--------
Q 006220          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLG--QQAVSSGLQGEND-----TTPREDIIG-PNGRK--------  411 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~--~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~--------  411 (656)
                      ..-.++|.|++||||+.+||..+.+|+|.+-+.+-..  .........+...     ....+.-+. ..++.        
T Consensus       117 G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p  196 (928)
T PF04762_consen  117 GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP  196 (928)
T ss_pred             EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence            3456789999999999999999999998887543211  0000000000000     000000000 00000        


Q ss_pred             ----eeeEEeecCccCEEEEEEccCCCEEEEEeC---C---CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE
Q 006220          412 ----RSYTLYQGHSGPVYSASFSPLGDFILSSSA---D---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS  481 (656)
Q Consensus       412 ----~~~~~l~~h~~~V~~l~~spd~~~L~s~s~---D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg  481 (656)
                          .....+. +...-..++|-.||.++++.+-   .   ..||||+-+ |....+...-.+--.+++|-|.|+.+|+.
T Consensus       197 ~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~  274 (928)
T PF04762_consen  197 TVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASS  274 (928)
T ss_pred             CCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEE
Confidence                0001122 3445668999999999997764   2   579999976 54433333223333468999999999988


Q ss_pred             EC---CCcEEEEECCCCceeEEe----cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee--EEEEe-cCCCCeE
Q 006220          482 SH---DRTARIWSMDRIQPLRIM----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC--VRIFI-GHRSMIL  551 (656)
Q Consensus       482 s~---Dg~i~lwd~~~~~~~~~~----~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~--~~~~~-~h~~~i~  551 (656)
                      ..   ...|.+|.-+ |-.-..|    ......|..+.|++++..||....|. |.+|-..+..-  ...+. .....+.
T Consensus       275 q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~  352 (928)
T PF04762_consen  275 QRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVN  352 (928)
T ss_pred             EEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCC
Confidence            64   3456666533 2222222    23456799999999999999987665 99998877542  12222 1223455


Q ss_pred             EEEEcCC-CCEEEEEECCCcEEEEeCC----CCe--------eeE----------eee-------------CCCccEEEE
Q 006220          552 SLAMSPD-GRYMASGDEDGTIMMWDLA----SGR--------CVT----------PLM-------------GHTSCVWTL  595 (656)
Q Consensus       552 ~l~~sp~-g~~L~s~~~dg~I~iwD~~----~~~--------~~~----------~~~-------------~h~~~V~~l  595 (656)
                      .+.|+|. ...|...+.+|.+..+++.    .+.        .+.          .+.             ....+|.++
T Consensus       353 ~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v  432 (928)
T PF04762_consen  353 FVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV  432 (928)
T ss_pred             ceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE
Confidence            5899995 3456666666666655431    110        011          110             124679999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          596 AYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       596 ~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      +|++++..+++-..||.|.+|.....
T Consensus       433 af~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  433 AFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             EEeCCCCeEEEEECCCCEEEEEecCC
Confidence            99999988999999999999996554

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.01  E-value=3.5e-08  Score=106.58  Aligned_cols=239  Identities=17%  Similarity=0.126  Sum_probs=178.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      -.++.|+|.| ++|.|+ .+.|.|-|...                            .+.+..+.-|...|+.+.|.|-.
T Consensus        18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s----------------------------~q~iqsie~h~s~V~~VrWap~~   67 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGS-HSLVSVVDSRS----------------------------LQLIQSIELHQSAVTSVRWAPAP   67 (1062)
T ss_pred             ccccccCccc-eEEEec-CceEEEEehhh----------------------------hhhhhccccCccceeEEEeccCC
Confidence            6788999876 677774 45677777553                            23445566788999999998731


Q ss_pred             ------------CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec---CC-CEEEEEECCCcEEEEECCCCce
Q 006220          434 ------------DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP---QG-HYFASSSHDRTARIWSMDRIQP  497 (656)
Q Consensus       434 ------------~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp---~~-~~l~sgs~Dg~i~lwd~~~~~~  497 (656)
                                  -.|+++...|.|.+||...+..+..+..|..++.+++|-+   +. ..++.-....++.+|+++++..
T Consensus        68 ~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen   68 SPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             CchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence                        2467888889999999999998888999999999999987   33 4566667778999999999999


Q ss_pred             eEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCC-------CCeeEEEEecCCC---------------------
Q 006220          498 LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-------SGECVRIFIGHRS---------------------  548 (656)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~-------~~~~~~~~~~h~~---------------------  548 (656)
                      ............|+.+.| +.+.+...+..|.|.+.+.-       .|+...+-..|..                     
T Consensus       148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa  227 (1062)
T KOG1912|consen  148 FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA  227 (1062)
T ss_pred             eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence            888776667788899998 66777777778888877653       1333333333322                     


Q ss_pred             ----CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCC--CEEEEEECCCcEEEEeCCCCC
Q 006220          549 ----MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG--SLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       549 ----~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~--~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                          ..-.++|+|.-+-++-...-..+.++|+.-..++....-..+.+.-+.|-|++  ..|.++..||.+.+|--+...
T Consensus       228 ~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~  307 (1062)
T KOG1912|consen  228 YFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP  307 (1062)
T ss_pred             hHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence                01235678876655555566789999999888888877666666777777754  579999999999999876643

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.99  E-value=9.6e-08  Score=91.59  Aligned_cols=231  Identities=10%  Similarity=-0.010  Sum_probs=153.0

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC-CCEEEEEe
Q 006220          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL-GDFILSSS  440 (656)
Q Consensus       362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-~~~L~s~s  440 (656)
                      ...+||.|+..|...+|...+...                           .......|...|.-+.=..+ .--+..++
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~---------------------------h~~~cd~snn~v~~~~r~cd~~~~~~i~s  135 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDG---------------------------HLYQCDVSNNDVTLVKRYCDLKFPLNIAS  135 (344)
T ss_pred             cccEEEeccccceeeeecccCccc---------------------------ceeeecccccchhhhhhhcccccceeecc
Confidence            567899999999999999875211                           11111112222211111111 12366778


Q ss_pred             CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc--eeE-EecCCCCCeeEEEEcCCC
Q 006220          441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLR-IMAGHLSDVDCVRWHINC  517 (656)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~--~~~-~~~~~~~~V~~v~~~p~~  517 (656)
                      .|.++++.+++.+..........-.+.++.+++++.++++.+....|..|.++...  .++ ........-.+..|+.+.
T Consensus       136 ndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~  215 (344)
T KOG4532|consen  136 NDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND  215 (344)
T ss_pred             CCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence            89999999887554433322222338899999999999999999999999987532  233 223344456788999999


Q ss_pred             CEEEEEECCCcEEEEeCCCCeeEE-----EEecCCCCeEEEEEcCCCC--EEEEEECCCcEEEEeCCCCeeeEeee----
Q 006220          518 NYIATGSSDKTVRLWDVSSGECVR-----IFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLASGRCVTPLM----  586 (656)
Q Consensus       518 ~~l~tgs~dg~V~iwd~~~~~~~~-----~~~~h~~~i~~l~~sp~g~--~L~s~~~dg~I~iwD~~~~~~~~~~~----  586 (656)
                      ..+|+++.||++.|||++.-....     .-..|.+.+..+.|++-|.  +|+..-.-+.+.+.|+++++....+.    
T Consensus       216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d  295 (344)
T KOG4532|consen  216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD  295 (344)
T ss_pred             ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence            999999999999999999654322     2235889999999998664  45555456789999999987555442    


Q ss_pred             ---CCC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          587 ---GHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       587 ---~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                         .|. ..|..-.|+.++..+.+.+.+ .+.=|++.+
T Consensus       296 ~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  296 VERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             ccccccccccccccccCCCcccccccch-hhheeeccc
Confidence               233 337777787776666555544 344565544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.98  E-value=9.4e-09  Score=103.82  Aligned_cols=164  Identities=21%  Similarity=0.250  Sum_probs=116.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      +..+..++++++||++..+....++++......                        .+..... .-...-+++.|..+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~------------------------~kl~~~~-~v~~~~~ai~~~~~~  119 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKG------------------------AKLLDVS-CVPKRPTAISFIRED  119 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCc------------------------ceeeeEe-ecccCcceeeeeecc
Confidence            445567889999999988888888887652210                        0111111 111222334444333


Q ss_pred             CEEE---EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-CCCCCee
Q 006220          434 DFIL---SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-GHLSDVD  509 (656)
Q Consensus       434 ~~L~---s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-~~~~~V~  509 (656)
                      ....   .++....+.+|+...+ +...+-||-+.+.+++|+||+.+++++..|..|++-.......+..+- ||..-|.
T Consensus       120 ~sv~v~dkagD~~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS  198 (390)
T KOG3914|consen  120 TSVLVADKAGDVYSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS  198 (390)
T ss_pred             ceEEEEeecCCceeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee
Confidence            3333   4445566777776653 344456899999999999999999999999999998887766665554 7999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe
Q 006220          510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI  544 (656)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~  544 (656)
                      .++.-++. .|++||.|++|++||+++|+++.++.
T Consensus       199 ~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  199 TISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eeeeccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence            99987654 58999999999999999999987654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=6.2e-08  Score=101.24  Aligned_cols=235  Identities=16%  Similarity=0.228  Sum_probs=163.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      =+-+.|||.|+||++--.- -|.+|-=..-                            ..+.. ..|. .|.-+.|||..
T Consensus       213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f----------------------------~r~~R-F~Hp-~Vq~idfSP~E  261 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESF----------------------------DRIQR-FYHP-GVQFIDFSPNE  261 (698)
T ss_pred             eeeEEecCCceEEEEEecc-ceeeecCccH----------------------------HHHHh-ccCC-CceeeecCCcc
Confidence            4678999999999987444 4778863210                            01111 1244 47889999999


Q ss_pred             CEEEEEeC-----------CCeEEEEeccCCceeEEeeC--CCccEEE-EEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220          434 DFILSSSA-----------DTTIRLWSTKLNANLVCYKG--HNYPVWD-VQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (656)
Q Consensus       434 ~~L~s~s~-----------Dg~I~lwd~~~~~~~~~~~~--h~~~V~~-l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~  499 (656)
                      ++|++-|.           ...++|||+.+|.....+..  ....+|. +.||-|+.|+|.-.. .+|.||+..+..++.
T Consensus       262 kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld  340 (698)
T KOG2314|consen  262 KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD  340 (698)
T ss_pred             ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeec
Confidence            99998663           25799999999998887766  3445554 579999999988776 569999987655444


Q ss_pred             EecCCCCCeeEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC-------
Q 006220          500 IMAGHLSDVDCVRWHINCNYIATGS-----SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-------  567 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs-----~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~-------  567 (656)
                      .-.-..+.|....|+|.++.||-=+     .-..+.+..+.+++.+++-.-|.-.=..+.|-.+|.+|+.--.       
T Consensus       341 ~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~  420 (698)
T KOG2314|consen  341 KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKV  420 (698)
T ss_pred             ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccc
Confidence            3334556788999999999888533     2246778888888888776655544456778888998886321       


Q ss_pred             ---CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC---CcEEEEeCCC
Q 006220          568 ---DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD---CTVKLWDVTT  620 (656)
Q Consensus       568 ---dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D---g~I~iWd~~~  620 (656)
                         -..+.|+.++........-.-...|..++|-|.|+.+++-+..   .++.+|.+.+
T Consensus       421 ~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  421 KGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             cceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence               1235555555443322222345678999999999987776543   6799999874

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=3e-07  Score=99.45  Aligned_cols=190  Identities=11%  Similarity=-0.028  Sum_probs=121.1

Q ss_pred             CeEEEEEcCCCCE-EEEEeCC---CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220          353 GLNCASISQDGSL-VAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (656)
Q Consensus       353 ~V~~l~fs~dg~~-La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  428 (656)
                      .+....|||||+. ++..+.+   ..|.++|+.+..                             ...+....+.+....
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-----------------------------~~~lt~~~g~~~~~~  239 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-----------------------------KEKIASSQGMLVVSD  239 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-----------------------------EEEEecCCCcEEeeE
Confidence            5778999999985 6654443   457777765411                             112223445566778


Q ss_pred             EccCCCEEEE-EeCC--CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CC--cEEEEECCCCceeEEec
Q 006220          429 FSPLGDFILS-SSAD--TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQPLRIMA  502 (656)
Q Consensus       429 ~spd~~~L~s-~s~D--g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg--~i~lwd~~~~~~~~~~~  502 (656)
                      |+|||+.++. .+.+  ..|.++++.++.. ..+..+........|+|+|+.|+..+. .+  .|+++|+.+++..+...
T Consensus       240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~  318 (419)
T PRK04043        240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF  318 (419)
T ss_pred             ECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence            9999987653 3333  4688888877654 334333333345689999998877763 23  68888888776655443


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECC---------CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--c
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSD---------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-G--T  570 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~d---------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d-g--~  570 (656)
                      ...   ....|+|+|++|+..+..         ..|.+.|+.++.... +... .......|+|||+.|+..+.+ +  .
T Consensus       319 ~g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~  393 (419)
T PRK04043        319 HGK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSA  393 (419)
T ss_pred             CCC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEE
Confidence            211   124899999999876643         368888988876543 3332 233458899999987765533 2  3


Q ss_pred             EEEEeCC
Q 006220          571 IMMWDLA  577 (656)
Q Consensus       571 I~iwD~~  577 (656)
                      +.+.++.
T Consensus       394 L~~~~l~  400 (419)
T PRK04043        394 LGIIRLN  400 (419)
T ss_pred             EEEEecC
Confidence            5666663

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=4.6e-07  Score=97.96  Aligned_cols=193  Identities=7%  Similarity=-0.011  Sum_probs=127.9

Q ss_pred             cCEEEEEEccCCCE-EEEEeC---CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CC--CcEEEEECCC
Q 006220          422 GPVYSASFSPLGDF-ILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HD--RTARIWSMDR  494 (656)
Q Consensus       422 ~~V~~l~~spd~~~-L~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~D--g~i~lwd~~~  494 (656)
                      +.+....|+|||+. ++..+.   +..|.++|+.+++...... ..+......|+|||..++... .+  ..|.++|+.+
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            37788999999984 554443   3569999998876654433 444566788999998776543 33  4678888877


Q ss_pred             CceeEEecCCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC---
Q 006220          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---  568 (656)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d---  568 (656)
                      +...+ +..+........|+|+|+.|+..+.. +  .|+++|+.+++..+.... ...  ...|||+|++|+..+..   
T Consensus       267 g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~  342 (419)
T PRK04043        267 KTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNN  342 (419)
T ss_pred             CcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCc
Confidence            76444 33333333456899999988776632 3  688889988877554332 111  24899999988876543   


Q ss_pred             ------CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCC---cEEEEeCCCC
Q 006220          569 ------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC---TVKLWDVTTS  621 (656)
Q Consensus       569 ------g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg---~I~iWd~~~~  621 (656)
                            ..|.+.|+.++.. ..+... +......|+|||+.|+..+.++   .+.+.++...
T Consensus       343 ~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        343 EFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             ccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence                  3688889877754 334332 2334688999999877766432   3666666553

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.94  E-value=7.2e-09  Score=104.66  Aligned_cols=160  Identities=21%  Similarity=0.352  Sum_probs=114.5

Q ss_pred             cEEEEEEecCCCEEEEEECCCcEEEEECCCCce----eEEecCCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCC
Q 006220          465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP----LRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSG  537 (656)
Q Consensus       465 ~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~----~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~V~iwd~~~~  537 (656)
                      ..+.+..++.+.++|++..+....+++++....    +.... -...-+++.|......+..+..-   ..+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            455567788888999988888877777765433    11111 11223344444444445444433   44555555444


Q ss_pred             eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-CCCccEEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLW  616 (656)
Q Consensus       538 ~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iW  616 (656)
                      .+ +.+.||-+.++.++|+||+++|+++..|..|++-.......+..+- ||+..|..++.-++ ..|+|||.|++|++|
T Consensus       143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW  220 (390)
T ss_pred             Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence            33 4456899999999999999999999999999998887666666554 79999999998765 459999999999999


Q ss_pred             eCCCCCceeec
Q 006220          617 DVTTSTKVLKT  627 (656)
Q Consensus       617 d~~~~~~~~~~  627 (656)
                      |+.+++.+...
T Consensus       221 d~~sgk~L~t~  231 (390)
T KOG3914|consen  221 DITSGKLLDTC  231 (390)
T ss_pred             ecccCCccccc
Confidence            99999887543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.92  E-value=3e-06  Score=85.22  Aligned_cols=216  Identities=16%  Similarity=0.146  Sum_probs=144.7

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc-cCC
Q 006220          356 CASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS-PLG  433 (656)
Q Consensus       356 ~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s-pd~  433 (656)
                      ++.|.+ ++.++++....+.|..|+....                             ...... ..+ ..++.+. +++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~-----------------------------~~~~~~-~~~-~~G~~~~~~~g   52 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG-----------------------------EVEVID-LPG-PNGMAFDRPDG   52 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT-----------------------------EEEEEE-SSS-EEEEEEECTTS
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC-----------------------------eEEEEe-cCC-CceEEEEccCC
Confidence            578887 7888888878899999997641                             111111 112 6677777 554


Q ss_pred             CEEEEEeCCCeEEEEeccCCceeEEeeC-----CCccEEEEEEecCCCEEEEEECC--------CcEEEEECCCCceeEE
Q 006220          434 DFILSSSADTTIRLWSTKLNANLVCYKG-----HNYPVWDVQFNPQGHYFASSSHD--------RTARIWSMDRIQPLRI  500 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~l~sgs~D--------g~i~lwd~~~~~~~~~  500 (656)
                       .|+.+...+ +.++|..+++.......     ......++++.|+|++.++....        |.+..++.+ ++....
T Consensus        53 -~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~  129 (246)
T PF08450_consen   53 -RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV  129 (246)
T ss_dssp             -EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred             -EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence             455555544 66669888755433332     34568899999999977776643        457777776 443333


Q ss_pred             ecCCCCCeeEEEEcCCCCEEE-EEECCCcEEEEeCCCCee----EEEE---ecCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220          501 MAGHLSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGEC----VRIF---IGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (656)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~~l~-tgs~dg~V~iwd~~~~~~----~~~~---~~h~~~i~~l~~sp~g~~L~s~~~dg~I~  572 (656)
                       .......+.++|+|+++.|+ +-+..+.|..|++.....    .+.+   ....+....+++..+|++.++....+.|.
T Consensus       130 -~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~  208 (246)
T PF08450_consen  130 -ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV  208 (246)
T ss_dssp             -EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred             -ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence             33456678999999999776 455678899999863221    2223   22223477899999999888888899999


Q ss_pred             EEeCCCCeeeEeeeCCCccEEEEEE-cCCCCEEEEE
Q 006220          573 MWDLASGRCVTPLMGHTSCVWTLAY-SCEGSLLASG  607 (656)
Q Consensus       573 iwD~~~~~~~~~~~~h~~~V~~l~~-s~~~~~l~sg  607 (656)
                      ++|.. |+.+..+......+++++| .++.+.|...
T Consensus       209 ~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  209 VFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             EECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            99976 9988888766568999999 4665555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.89  E-value=5.7e-07  Score=92.52  Aligned_cols=172  Identities=17%  Similarity=0.198  Sum_probs=135.6

Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC-cEEEEECCCCceeEEecCCCCCeeE
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-TARIWSMDRIQPLRIMAGHLSDVDC  510 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg-~i~lwd~~~~~~~~~~~~~~~~V~~  510 (656)
                      +|.+++..|. |...+.+...+-.+.  -+|...|.-..+..++.-++.|..|| .+-++|.++++..+. .+..+.|.+
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEE
Confidence            5778887776 667777765444333  35677788888888888999999999 899999998765544 456788999


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC----cEEEEeCCCCeeeEeee
Q 006220          511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG----TIMMWDLASGRCVTPLM  586 (656)
Q Consensus       511 v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg----~I~iwD~~~~~~~~~~~  586 (656)
                      +..+|+|++++++.....+.+.|+.+|+....-+...+-|+...|+|+++++|-+--+|    .|+++|+..++.... .
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-T  485 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-T  485 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe-c
Confidence            99999999999999999999999999988776667778899999999999999887665    699999987765543 2


Q ss_pred             CCCccEEEEEEcCCCCEEEEEE
Q 006220          587 GHTSCVWTLAYSCEGSLLASGS  608 (656)
Q Consensus       587 ~h~~~V~~l~~s~~~~~l~sgs  608 (656)
                      ...+.=.+-+|.|++++|.--+
T Consensus       486 T~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         486 TPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CCcccccCcccCCCCcEEEEEe
Confidence            2333334567899999876554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.88  E-value=3.6e-07  Score=94.97  Aligned_cols=236  Identities=14%  Similarity=0.198  Sum_probs=165.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      .-++..++|||.|.+|++.... .|.+|.-....                            .+..+  ....|+.+.||
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~----------------------------~l~~~--~~~~V~~~~fS   80 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA----------------------------KLVRF--RHPDVKYLDFS   80 (561)
T ss_pred             CcchhheeecCcchheehhhcc-ceEEccccchh----------------------------heeee--ecCCceecccC
Confidence            4468899999999999987544 48888754311                            11111  22468999999


Q ss_pred             cCCCEEEEEeCCC---------------eEEEEeccCCceeEEeeCCCcc--EE-EEEEecCCCEEEEEECCCcEEEEEC
Q 006220          431 PLGDFILSSSADT---------------TIRLWSTKLNANLVCYKGHNYP--VW-DVQFNPQGHYFASSSHDRTARIWSM  492 (656)
Q Consensus       431 pd~~~L~s~s~Dg---------------~I~lwd~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~l~sgs~Dg~i~lwd~  492 (656)
                      |.+++|.+-+..+               .+.+||+.++..+..+.+...+  .| -+.|+-+..|+|-. ....++++++
T Consensus        81 P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~  159 (561)
T COG5354          81 PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI  159 (561)
T ss_pred             cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec
Confidence            9999999876543               4999999999999988887766  77 78999988887655 3356899995


Q ss_pred             -CCCc--eeEEecCCCCCeeEEEEcCCC--CEEEE-----EECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEE
Q 006220          493 -DRIQ--PLRIMAGHLSDVDCVRWHINC--NYIAT-----GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM  562 (656)
Q Consensus       493 -~~~~--~~~~~~~~~~~V~~v~~~p~~--~~l~t-----gs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L  562 (656)
                       .+..  +...+  ....|....|+|.+  ..|+.     ++.++.+++|.+..+..+.+..-....-..+.|.+.|.+|
T Consensus       160 t~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~l  237 (561)
T COG5354         160 TDNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYL  237 (561)
T ss_pred             CCccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceE
Confidence             2222  11122  23567888899854  33443     5678899999998777665543333334568899999887


Q ss_pred             EEEE-----------CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEE--CCCcEEEEeCCCC
Q 006220          563 ASGD-----------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTS  621 (656)
Q Consensus       563 ~s~~-----------~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iWd~~~~  621 (656)
                      ++--           ....+.|+++....+-.. ..-.++|..++|.|.++.+++.+  .+-.+.++|++..
T Consensus       238 l~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         238 LVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             EEEEEEeeecccceeccceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc
Confidence            6532           124688888864333322 25578999999999888766655  6778899998876

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.88  E-value=2.9e-06  Score=85.37  Aligned_cols=207  Identities=11%  Similarity=0.148  Sum_probs=142.7

Q ss_pred             eecCccCEEEEEEccCCCEEEEEeCC---CeEEEEeccC--Cce--eEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEE
Q 006220          417 YQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKL--NAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTAR  488 (656)
Q Consensus       417 l~~h~~~V~~l~~spd~~~L~s~s~D---g~I~lwd~~~--~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~  488 (656)
                      +..+.+.++-++|+|+++.|.++-.+   |.|..|.++.  |..  +........+-+.++++++|++++++. .-|.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            34566788899999999999887654   7788877764  332  111222233447899999999999987 568899


Q ss_pred             EEECCC-CceeE--EecCCCCC----------eeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeeEEEEe---cCCCCeE
Q 006220          489 IWSMDR-IQPLR--IMAGHLSD----------VDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFI---GHRSMIL  551 (656)
Q Consensus       489 lwd~~~-~~~~~--~~~~~~~~----------V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~~~~~~~~~---~h~~~i~  551 (656)
                      ++-++. +....  ....|.+.          +.+..+.|++++|++.+- --.|.+|++..|.....-.   .....-.
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR  194 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR  194 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence            998854 32221  12234444          888999999999988753 2479999999776543211   2344568


Q ss_pred             EEEEcCCCCEEEEEE-CCCcEEEEeCCCC-eeeEeeeC---------CCccEEEEEEcCCCCEEEEEE-CCCcEEEEeCC
Q 006220          552 SLAMSPDGRYMASGD-EDGTIMMWDLASG-RCVTPLMG---------HTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVT  619 (656)
Q Consensus       552 ~l~~sp~g~~L~s~~-~dg~I~iwD~~~~-~~~~~~~~---------h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~  619 (656)
                      .|.|+|+|++..+.+ -+++|.+|..... ..+..++.         -......+..++||++|.++. ....|.++.+.
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            899999999887755 6889999998763 23333321         123456788999999988775 33478888877


Q ss_pred             CCCc
Q 006220          620 TSTK  623 (656)
Q Consensus       620 ~~~~  623 (656)
                      ....
T Consensus       275 ~~~g  278 (346)
T COG2706         275 PDGG  278 (346)
T ss_pred             CCCC
Confidence            6543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.87  E-value=5.6e-07  Score=107.66  Aligned_cols=215  Identities=13%  Similarity=0.167  Sum_probs=136.1

Q ss_pred             eEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc-
Q 006220          354 LNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-  431 (656)
Q Consensus       354 V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-  431 (656)
                      -..++++++++.|.++ +.++.|+++|+.+.........  +.....     . ..+......    .-..-++++|+| 
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~--G~~g~~-----~-~gg~~~~~~----~ln~P~gVa~dp~  693 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGN--GTKGSD-----Y-QGGKKGTSQ----VLNSPWDVCFEPV  693 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEecc--CcccCC-----C-CCChhhhHh----hcCCCeEEEEecC
Confidence            4788899888765554 4457799998765221111000  000000     0 000000000    012235789999 


Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeCC---------------CccEEEEEEecCCCEE-EEEECCCcEEEEECCCC
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGH---------------NYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDRI  495 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h---------------~~~V~~l~~sp~~~~l-~sgs~Dg~i~lwd~~~~  495 (656)
                      ++..+++.+.++.|++||..++... .+.+.               -...++|+++|++..+ ++-+.++.|++||++++
T Consensus       694 ~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg  772 (1057)
T PLN02919        694 NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG  772 (1057)
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            5566677788899999998766432 22111               1234679999998855 45556799999999875


Q ss_pred             ceeEEecC---------------------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe----------
Q 006220          496 QPLRIMAG---------------------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI----------  544 (656)
Q Consensus       496 ~~~~~~~~---------------------~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~----------  544 (656)
                      .......+                     .......++++++|+.+++-+.++.|++||..++.......          
T Consensus       773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~  852 (1057)
T PLN02919        773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK  852 (1057)
T ss_pred             cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc
Confidence            43211100                     01134688999999988888899999999998876653321          


Q ss_pred             ---cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220          545 ---GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       545 ---~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                         +.-.....|+++++|+++++-+.++.|++||+.+++.
T Consensus       853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        853 ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence               1112467899999999988888999999999988764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=5.5e-09  Score=103.22  Aligned_cols=157  Identities=17%  Similarity=0.253  Sum_probs=121.9

Q ss_pred             EEEec--CCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-----eeEE
Q 006220          469 VQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-----ECVR  541 (656)
Q Consensus       469 l~~sp--~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-----~~~~  541 (656)
                      ++|+-  .|.. ++.+.+..+-+-|+.++.... |. ..++|.++.|+..++.++.|+.+|.|..+|++.+     .+..
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~  293 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ  293 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence            35543  3444 455566778888888764433 33 6788999999999999999999999999999864     3444


Q ss_pred             EEecCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCee---eEeeeCCCccEE--EEEEcCCCCEEEEEECCCcEEE
Q 006220          542 IFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRC---VTPLMGHTSCVW--TLAYSCEGSLLASGSADCTVKL  615 (656)
Q Consensus       542 ~~~~h~~~i~~l~~sp-~g~~L~s~~~dg~I~iwD~~~~~~---~~~~~~h~~~V~--~l~~s~~~~~l~sgs~Dg~I~i  615 (656)
                      .+ -|.+.|+++..-. ++++|++.+.+|+|.+||++.-++   +.++.||...-.  -+...+....++++|.|...||
T Consensus       294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi  372 (425)
T KOG2695|consen  294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI  372 (425)
T ss_pred             EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence            44 3889999988766 788999999999999999998777   888899864332  2334667778999999999999


Q ss_pred             EeCCCCCceeeccc
Q 006220          616 WDVTTSTKVLKTEE  629 (656)
Q Consensus       616 Wd~~~~~~~~~~~~  629 (656)
                      |.++.+..+...+.
T Consensus       373 Wsl~~ghLl~tipf  386 (425)
T KOG2695|consen  373 WSLDSGHLLCTIPF  386 (425)
T ss_pred             EecccCceeeccCC
Confidence            99999887766544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.85  E-value=1.9e-06  Score=85.98  Aligned_cols=188  Identities=17%  Similarity=0.140  Sum_probs=128.0

Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-cCCCC---C
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-AGHLS---D  507 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~-~~~~~---~  507 (656)
                      ++..+++++.++.|..||..+++.+..+.. ..++.... ...+..+++++.++.++.+|..+++.+... .....   .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            567788888999999999999998877765 22222222 224566777778899999999999988774 32211   1


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC----------eEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM----------ILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (656)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~----------i~~l~~sp~g~~L~s~~~dg~I~iwD~~  577 (656)
                      .........+..++++..++.|..+|.++|+.+.........          +..-....++ .++.++.+|.+.-+|+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~  191 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA  191 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC
Confidence            122222334788999998999999999999998888764422          1122222344 77777777764444999


Q ss_pred             CCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       578 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      +++.+....  ...+..+ ....+..|+.++.++.|..||+.+++...
T Consensus       192 tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  192 TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            998664333  2223332 34667788888899999999999988654

...

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.84  E-value=2.4e-06  Score=87.98  Aligned_cols=148  Identities=13%  Similarity=0.133  Sum_probs=120.3

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDS-SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg-~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      ..++.++|.-..+..++.-++.|..|| .+-|++..+.                             ........-+.|.
T Consensus       355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-----------------------------e~kr~e~~lg~I~  405 (668)
T COG4946         355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-----------------------------EVKRIEKDLGNIE  405 (668)
T ss_pred             EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-----------------------------eEEEeeCCccceE
Confidence            457788899999999988999999999 8999998752                             3344555668899


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC----cEEEEECCCCceeEEe
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR----TARIWSMDRIQPLRIM  501 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg----~i~lwd~~~~~~~~~~  501 (656)
                      ++..+++|++++.+.....|.+.|++++.....-+...+-|+.+.|+|+++++|-+--+|    .|+++|+..++.....
T Consensus       406 av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence            999999999999999999999999999988777677778899999999999999887654    6899999988766655


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEEE
Q 006220          502 AGHLSDVDCVRWHINCNYIATGS  524 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs  524 (656)
                      ... +.=.+-+|.|++++|.--+
T Consensus       486 T~t-a~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         486 TPT-AYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CCc-ccccCcccCCCCcEEEEEe
Confidence            422 3334557889999887654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.83  E-value=1.8e-09  Score=117.44  Aligned_cols=215  Identities=16%  Similarity=0.245  Sum_probs=155.2

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      +|..+....+|++||-+.++|++|+..|.|+++++..+                            .......+|.++|+
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG----------------------------~~e~s~ncH~SavT 1147 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG----------------------------SMEESVNCHQSAVT 1147 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCc----------------------------cccccccccccccc
Confidence            56778889999999999999999999999999998762                            22234567999999


Q ss_pred             EEEEccCCCEEEEEeCCC--eEEEEeccC-CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-
Q 006220          426 SASFSPLGDFILSSSADT--TIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-  501 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg--~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~-  501 (656)
                      -+.-+.+|..+++.+.-.  -..+|++.. +...+.|.    .-.++.|+.....-+.|+....+.+||+.+..++.++ 
T Consensus      1148 ~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1148 LVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred             cccccCCcceeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhc
Confidence            999999998777655433  467999864 34444444    3457889876555566666678999999998877653 


Q ss_pred             c---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          502 A---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       502 ~---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      .   +..-.-++..|+|....++-   ||  .+||++..+.++.|...+.. ..-.|+|+|..++..+.     |||+++
T Consensus      1224 t~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred             CcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHH
Confidence            2   12223478899998877764   44  37999998888777544422 23469999999888774     899999


Q ss_pred             CeeeEeeeCCCccEEEEEEcCCCCEEE
Q 006220          579 GRCVTPLMGHTSCVWTLAYSCEGSLLA  605 (656)
Q Consensus       579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~  605 (656)
                      -+.++....-.  -..+.|+..|.++.
T Consensus      1293 F~lLh~VP~Ld--qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1293 FKLLHSVPSLD--QCAVTFNSTGDVMY 1317 (1516)
T ss_pred             HHHHhcCcccc--ceEEEeccCccchh
Confidence            88776654322  13566766666544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.81  E-value=5.9e-08  Score=92.69  Aligned_cols=176  Identities=21%  Similarity=0.239  Sum_probs=110.1

Q ss_pred             cCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCcee
Q 006220          334 LSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRS  413 (656)
Q Consensus       334 l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (656)
                      +|......-.+.++..+.+.-.|-+.+--++-+++|..||.+.+++.+..  .....                       
T Consensus        72 ~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~--~~~~~-----------------------  126 (319)
T KOG4714|consen   72 LWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD--LALMS-----------------------  126 (319)
T ss_pred             hhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHH--Hhhhh-----------------------
Confidence            34444444445555555555555556666788999999999999997641  11000                       


Q ss_pred             eEEeecCccCEEEEEEccCCCEEEEEeC-----CCeEEEEeccCCceeEEeeCCCccEEEEEEecC-CCEEEEEECCCcE
Q 006220          414 YTLYQGHSGPVYSASFSPLGDFILSSSA-----DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTA  487 (656)
Q Consensus       414 ~~~l~~h~~~V~~l~~spd~~~L~s~s~-----Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i  487 (656)
                       +.-..|.+. .+.++...++++.++..     -+..+.|+++..+.+...+.....|.+++-+|. .+.+++|+.||.+
T Consensus       127 -~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~  204 (319)
T KOG4714|consen  127 -RIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIV  204 (319)
T ss_pred             -hcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeE
Confidence             000011111 11122222333333321     134566766544333222222334889999994 5567888899999


Q ss_pred             EEEECCCCc-eeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 006220          488 RIWSMDRIQ-PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS  536 (656)
Q Consensus       488 ~lwd~~~~~-~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~  536 (656)
                      .+||.++.. +...+..|..++.-+-||| ++..|++++.||.+..||..+
T Consensus       205 ~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  205 GLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            999998763 4556678999999999998 678999999999999999764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=6.9e-07  Score=93.59  Aligned_cols=265  Identities=14%  Similarity=0.222  Sum_probs=162.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-----------CCcEEEEEcCCCCcccccccCCCCCCC------CCCccccCCCCCcee
Q 006220          351 HNGLNCASISQDGSLVAGGFS-----------DSSLKVWDMAKLGQQAVSSGLQGENDT------TPREDIIGPNGRKRS  413 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~-----------dg~I~Iwdl~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  413 (656)
                      +.+|.-+.|||+.+||++-+.           ...+.|||+.++..........+....      .........- ....
T Consensus       249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm-~~~s  327 (698)
T KOG2314|consen  249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM-TGNS  327 (698)
T ss_pred             CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEe-ccce
Confidence            346899999999999998653           146999999886554433221111000      0000000000 0000


Q ss_pred             --------eEEeec---CccCEEEEEEccCCCEEEEEeCC-----CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCE
Q 006220          414 --------YTLYQG---HSGPVYSASFSPLGDFILSSSAD-----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY  477 (656)
Q Consensus       414 --------~~~l~~---h~~~V~~l~~spd~~~L~s~s~D-----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~  477 (656)
                              ...+.+   .-..|...+|+|.+..|+.-+..     ..+.+-.+.+++.+.+-.-|+-.-+.+-|-.+|.+
T Consensus       328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy  407 (698)
T KOG2314|consen  328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY  407 (698)
T ss_pred             EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence                    111111   23567888999998888754432     35777777777777766655544456777778888


Q ss_pred             EEEEE----------CCCcEEEEECCCCc-eeEEecCCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCC-C---ee
Q 006220          478 FASSS----------HDRTARIWSMDRIQ-PLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSS-G---EC  539 (656)
Q Consensus       478 l~sgs----------~Dg~i~lwd~~~~~-~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~V~iwd~~~-~---~~  539 (656)
                      |+.--          .-..+-|+.++... ++..+ .-...|...+|-|.|+.+++-+.   ..++++|-+.+ +   ..
T Consensus       408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l  486 (698)
T KOG2314|consen  408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL  486 (698)
T ss_pred             EEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence            87532          11234455554433 23332 34567889999999998877543   35788998873 2   22


Q ss_pred             EEEEecCCCCeEEEEEcCCCCEEEEEE---CCCcEEEEeCCCCeeeEe-eeCCCccEEEEEEcCCCCEEEEEEC------
Q 006220          540 VRIFIGHRSMILSLAMSPDGRYMASGD---EDGTIMMWDLASGRCVTP-LMGHTSCVWTLAYSCEGSLLASGSA------  609 (656)
Q Consensus       540 ~~~~~~h~~~i~~l~~sp~g~~L~s~~---~dg~I~iwD~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~sgs~------  609 (656)
                      +..+.  ....+.+.|+|.|++++.+.   ..|.+.++|+....+... ...|. ..+.+.|.|.|+|+++++.      
T Consensus       487 Vk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~  563 (698)
T KOG2314|consen  487 VKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKV  563 (698)
T ss_pred             hhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhcc
Confidence            33332  34578899999999988864   578899999864222211 11232 4577899999999999985      


Q ss_pred             CCcEEEEeCCC
Q 006220          610 DCTVKLWDVTT  620 (656)
Q Consensus       610 Dg~I~iWd~~~  620 (656)
                      |..-+||++..
T Consensus       564 d~GYri~tfqG  574 (698)
T KOG2314|consen  564 DNGYRIFTFQG  574 (698)
T ss_pred             ccceEEEEeec
Confidence            44566777654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.79  E-value=1.9e-06  Score=92.55  Aligned_cols=188  Identities=14%  Similarity=0.057  Sum_probs=124.5

Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEE-----EEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC--
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-----DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL--  505 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-----~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~--  505 (656)
                      +..++.++.+|.|..||..+++.+..+......+.     +...  .+..++.++.+|.+..+|..+++.+.......  
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~  222 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK  222 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence            45677788899999999999988776654332211     1111  13467788889999999998887664432110  


Q ss_pred             --CC---eeEEEEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          506 --SD---VDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       506 --~~---V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~  578 (656)
                        ..   +..+.-+|  .+..+++++.+|.++.||..+|+.+..... .. .....  ..+..++.++.+|.|..+|..+
T Consensus       223 g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~t  298 (377)
T TIGR03300       223 GRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVVVALDRRS  298 (377)
T ss_pred             CCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeEEEEECCC
Confidence              00   00011111  356788888999999999999988765542 11 12222  2467888888999999999999


Q ss_pred             CeeeEeeeCCC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          579 GRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       579 ~~~~~~~~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      |+.+....... ....+...  .+..+++++.+|.|++||..+++......
T Consensus       299 G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       299 GSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             CcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            98776553211 11222222  36689999999999999999988876554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.74  E-value=1.9e-07  Score=91.13  Aligned_cols=205  Identities=17%  Similarity=0.338  Sum_probs=141.3

Q ss_pred             CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc-e----eEEeeCCC------------ccEEEEEEecCC--CEEEE
Q 006220          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-N----LVCYKGHN------------YPVWDVQFNPQG--HYFAS  480 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~-~----~~~~~~h~------------~~V~~l~~sp~~--~~l~s  480 (656)
                      ....|+++.|...|.+|++|...|.|.+|.-.... |    ...+++|.            ..|..+.|..++  ..|+.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34678999999999999999999999999755332 1    22345554            247778887654  45888


Q ss_pred             EECCCcEEEEECCCCc------------------------------------------eeEEe-cCCCCCeeEEEEcCCC
Q 006220          481 SSHDRTARIWSMDRIQ------------------------------------------PLRIM-AGHLSDVDCVRWHINC  517 (656)
Q Consensus       481 gs~Dg~i~lwd~~~~~------------------------------------------~~~~~-~~~~~~V~~v~~~p~~  517 (656)
                      .+.|++|++|.+....                                          +.+.+ ..|.-.++++.|+.+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            8899999999875320                                          11222 3566678889998887


Q ss_pred             CEEEEEECCCcEEEEeCCCCee---EEEEecCC-----CCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCee------e
Q 006220          518 NYIATGSSDKTVRLWDVSSGEC---VRIFIGHR-----SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRC------V  582 (656)
Q Consensus       518 ~~l~tgs~dg~V~iwd~~~~~~---~~~~~~h~-----~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~------~  582 (656)
                      ..++++ .|=.|.+|++.-...   +.-++.|.     .-|++..|+|. ...+.-.+..|.|++-|++....      +
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            777765 577899998864321   22233343     35888899995 34566667789999999984321      1


Q ss_pred             Ee----------eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220          583 TP----------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       583 ~~----------~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                      ..          +.+-...|..+.|+++|+++++-+. .+|+|||+...+....
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik  316 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK  316 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence            11          1122356888999999999987654 4899999988665443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.72  E-value=4.9e-08  Score=104.88  Aligned_cols=203  Identities=25%  Similarity=0.358  Sum_probs=149.1

Q ss_pred             ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCC--ccEEEEEEecCC--CEEEEEECCCcEEEEECCCC-
Q 006220          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN--YPVWDVQFNPQG--HYFASSSHDRTARIWSMDRI-  495 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~--~~V~~l~~sp~~--~~l~sgs~Dg~i~lwd~~~~-  495 (656)
                      .+++..++.+|.|+-++.++.-| +.+.|++..-..-.+-.|-  -.|-++.|+|..  .+-++........+|++... 
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            36778899999999999998877 6667776443322222232  346678888853  45555555667788987543 


Q ss_pred             --ceeEEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCe-eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcE
Q 006220          496 --QPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (656)
Q Consensus       496 --~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~-~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I  571 (656)
                        ..-..+.+|...|+.+.|+|.. ..+++++.|..|..||+++.. ++..+..-....+.++|+-....+.+.+..+.|
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i  182 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI  182 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence              2334566999999999999854 578899999999999999753 455554444567788998754445555566789


Q ss_pred             EEEeCCCC-eeeEeeeCCCccEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCCce
Q 006220          572 MMWDLASG-RCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       572 ~iwD~~~~-~~~~~~~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      .+||++.| .++..+++|...|++++|.. ....+.+++.||+|++||.......
T Consensus       183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence            99999876 57788889999999999976 3456889999999999999876554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.72  E-value=2.1e-06  Score=92.17  Aligned_cols=175  Identities=15%  Similarity=0.069  Sum_probs=117.4

Q ss_pred             CEEEEEeCCCeEEEEeccCCceeEEeeCCCc-------cEEEEEEec--CCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~l~~sp--~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  504 (656)
                      ..++.++.+|.+..+|..+++.+........       ....+.-+|  .+..+++++.+|.++.||..+++.+......
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~  270 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS  270 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC
Confidence            4677888889999999988876654321100       000111111  3567888889999999999998876655421


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC-CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~-~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~  583 (656)
                        ......  ..+..+++++.+|.+..+|..+|+.+........ ...+...  .+..|++++.+|.|.+||..+|+.+.
T Consensus       271 --~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~  344 (377)
T TIGR03300       271 --SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA  344 (377)
T ss_pred             --CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence              111122  2467888888999999999999988765532211 2222222  36789999999999999999999998


Q ss_pred             eeeCCCccEEE-EEEcCCCCEEEEEECCCcEEEE
Q 006220          584 PLMGHTSCVWT-LAYSCEGSLLASGSADCTVKLW  616 (656)
Q Consensus       584 ~~~~h~~~V~~-l~~s~~~~~l~sgs~Dg~I~iW  616 (656)
                      ++..+...+.+ ..+. + ..|+.++.||.|..|
T Consensus       345 ~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       345 RLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence            88766543322 2232 3 358889999998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.72  E-value=6e-09  Score=113.56  Aligned_cols=200  Identities=16%  Similarity=0.230  Sum_probs=153.4

Q ss_pred             eeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC--cEEE
Q 006220          412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TARI  489 (656)
Q Consensus       412 ~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg--~i~l  489 (656)
                      +..+.+..|....+|++|+-+.++|+.|+..|.|+++++.+|.....+.+|+++|+-+.-+.+|...++.+.-.  -..+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            45566778999999999999999999999999999999999999999999999999999999999877766433  4678


Q ss_pred             EECCC-CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-ec---CCCCeEEEEEcCCCCEEEE
Q 006220          490 WSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IG---HRSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       490 wd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~---h~~~i~~l~~sp~g~~L~s  564 (656)
                      |+... +.+.+.|.+    -.++.|+.....-+.|+......+||++++..+.++ .+   ....-++..|||+..+++ 
T Consensus      1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            98754 444555543    457888876666677777778999999999877653 22   122336788999988776 


Q ss_pred             EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                        .||  .+||.+..+.++.+...+..+ .-.|+|.|.-++.-+.     |||+++-..+..
T Consensus      1247 --ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHS 1298 (1516)
T ss_pred             --eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhc
Confidence              455  479999887777765444222 3359999998887764     899987655443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.71  E-value=5.2e-08  Score=96.49  Aligned_cols=159  Identities=13%  Similarity=0.188  Sum_probs=124.0

Q ss_pred             EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-----ceeEEecCCCCCeeEE
Q 006220          437 LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-----QPLRIMAGHLSDVDCV  511 (656)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-----~~~~~~~~~~~~V~~v  511 (656)
                      ++.+.+-.|-+-++.++... .+. ..+.|.++.|...++.+..|+.+|.|..+|++..     .+...+ -|.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence            55666777999998876432 233 5667899999998999999999999999999864     334444 388999999


Q ss_pred             EEcC-CCCEEEEEECCCcEEEEeCCCCee---EEEEecCCCCeEE--EEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220          512 RWHI-NCNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMILS--LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       512 ~~~p-~~~~l~tgs~dg~V~iwd~~~~~~---~~~~~~h~~~i~~--l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      ..-. ++++|.+.+.+|+|.+||.+--++   ++.+.||...-.-  +...+....+++++.|...+||.+++|..+.++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            8776 788999999999999999997776   8889988653322  334566778999999999999999999999887


Q ss_pred             eCCC----ccEEEEEEc
Q 006220          586 MGHT----SCVWTLAYS  598 (656)
Q Consensus       586 ~~h~----~~V~~l~~s  598 (656)
                      ....    ..+++++|.
T Consensus       385 pf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  385 PFPYSASEVDIPSVAFD  401 (425)
T ss_pred             CCCCccccccccceehh
Confidence            6432    245566664

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=3.2e-07  Score=100.18  Aligned_cols=181  Identities=16%  Similarity=0.172  Sum_probs=135.2

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      ..++|++++  +++|+.|+.+|.|++.+.... . .....|...      ..+|.|+++||.||++.|-.+.+.+....+
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            556777777  689999999999999998733 3 333345433      558999999999999999998887776666


Q ss_pred             cCCCCCeeEEEEcCC-----CCEEEEEECCCcEEEEeCCCC--eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          502 AGHLSDVDCVRWHIN-----CNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~-----~~~l~tgs~dg~V~iwd~~~~--~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw  574 (656)
                      . ...++.+|+++|+     .+.+++|+.-| +.++.-+--  +.........++|.++.|.  |.++|-++.+| |++|
T Consensus       110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy  184 (846)
T KOG2066|consen  110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY  184 (846)
T ss_pred             e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence            5 3478999999997     57899999888 878764321  1111355667899999997  88999998877 8999


Q ss_pred             eCCCCeeeEeeeCCCcc------EEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          575 DLASGRCVTPLMGHTSC------VWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       575 D~~~~~~~~~~~~h~~~------V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      |+.+++.+..+......      -..+.|.++.+ |+.|- ..+|+|..++
T Consensus       185 d~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  185 DTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK  233 (846)
T ss_pred             eccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence            99999888777543322      34678877654 44444 3478999887

>KOG1333 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=4e-08  Score=89.69  Aligned_cols=176  Identities=15%  Similarity=0.129  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHHhcCCCCCCCCCCCCCCchhhcccccccccccCChhhHHHHHHHHHHHHhccc-
Q 006220            4 LQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSL-   82 (656)
Q Consensus         4 ~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~sl-   82 (656)
                      +.++.+|.+||.-|||+.|.++|.+|++..+.++-.++.       |-+.+..- .+-.|-+.....+..|.+-|.++| 
T Consensus         6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdr-------ivdq~~~a-~q~~Dl~aLr~~W~~l~~r~Fs~Le   77 (241)
T KOG1333|consen    6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDR-------IVDQLQQA-MQVYDLAALRDYWSYLERRLFSRLE   77 (241)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHH-------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467999999999999999999999999876653322211       11222111 123577888889999999999999 


Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcCCChhhhccCHHHHHhhcCceEEEE
Q 006220           83 DLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKI  162 (656)
Q Consensus        83 d~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~  162 (656)
                      ++|++...++=-.+|-+....-|++++++.|.+||+|-+.+...  +.+++.+....--.|.++.|..+.|....+.-..
T Consensus        78 ~~y~~~~~kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lqn--q~eWkDWF~fPf~~~a~~tppf~~~F~ktw~e~~  155 (241)
T KOG1333|consen   78 DIYRPTIHKLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQN--QAEWKDWFVLPFLPSAKDTPPFRKYFDKTWIEIY  155 (241)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhc--chhhhhheecccCCCCCCCccHHHHHHhhhhHhh
Confidence            79999999999999999999999999999999999999988765  7889999999988999999999999888887777


Q ss_pred             chhhHHHHHHHHhhCCcchHhHhhcce
Q 006220          163 CQYSYELLLQYLHKTQSTKMLGIINER  189 (656)
Q Consensus       163 ~~~~~~~l~~~l~~~~~~~~~~i~~~~  189 (656)
                      --...++|-.-++.....+|++|..+.
T Consensus       156 ~~sl~Nflst~~qc~p~pvi~~~~~e~  182 (241)
T KOG1333|consen  156 YVSLHNFLSTLFQCMPVPVILNFDAEC  182 (241)
T ss_pred             hhhHHhHHHHHHHcCCcceeehHHHHH
Confidence            777778888888888888888877654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.69  E-value=2.4e-05  Score=78.64  Aligned_cols=191  Identities=15%  Similarity=0.135  Sum_probs=128.9

Q ss_pred             EEEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEe-cCCCEEEEEECCCcEEEEECCCCceeEEecC
Q 006220          426 SASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       426 ~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s-p~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~  503 (656)
                      ++.|.+ ++.++++-...+.|..|+..++.... +....  ..++.+. ++ ..++.+...+ +.++|..+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            578888 66677777778999999998765543 33222  6677787 55 4555565544 55569888755444332


Q ss_pred             -----CCCCeeEEEEcCCCCEEEEEECC--------CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEE-EEECCC
Q 006220          504 -----HLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA-SGDEDG  569 (656)
Q Consensus       504 -----~~~~V~~v~~~p~~~~l~tgs~d--------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~-s~~~dg  569 (656)
                           .....+.+++.|+|+..++....        |.|..++.. ++...... .-...+.|+|+|+++.|+ +-+..+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence                 34567889999999977775543        557888877 55544443 345678999999999776 556778


Q ss_pred             cEEEEeCCCCe-------eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          570 TIMMWDLASGR-------CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       570 ~I~iwD~~~~~-------~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      .|..+++....       .+..+....+..-.+++..+|++.++....+.|.+++.. ++..
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~  217 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL  217 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence            89999985322       122222222457889999999998888889999999977 5543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.69  E-value=2.7e-06  Score=81.88  Aligned_cols=195  Identities=12%  Similarity=0.029  Sum_probs=133.5

Q ss_pred             CCEEEEEeCCCeEEEEeccCCcee-EEeeCCCccEEEEEE-ecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeE
Q 006220          433 GDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQF-NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC  510 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~-sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~  510 (656)
                      ..+|+.|+..|...+|...+.+.. .....|...|.-+.= .-...-+..++.|.++++.+++.+..........-.+.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            457999999999999999866543 222334333322211 112234667788889988888755433222111122788


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCCe--eEEE-EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEe---
Q 006220          511 VRWHINCNYIATGSSDKTVRLWDVSSGE--CVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP---  584 (656)
Q Consensus       511 v~~~p~~~~l~tgs~dg~V~iwd~~~~~--~~~~-~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~---  584 (656)
                      +++++++.++++.+....|-.|.+....  .+++ .......-.+..|+.....+|+++.||++.|||++.......   
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s  243 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS  243 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence            9999999999999999999999886532  2332 223334456788999999999999999999999987543322   


Q ss_pred             --eeCCCccEEEEEEcCCCC--EEEEEECCCcEEEEeCCCCCceeec
Q 006220          585 --LMGHTSCVWTLAYSCEGS--LLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       585 --~~~h~~~V~~l~~s~~~~--~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                        -..|.+.+..+.|++.|.  +|...-.-+.+.+-|+++....+..
T Consensus       244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence              235889999999998653  4554445678999999987765433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.68  E-value=2.8e-06  Score=83.03  Aligned_cols=200  Identities=14%  Similarity=0.172  Sum_probs=114.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      =.-++||||+.+||.+...|+|+++|+............                      .....-...|.++.|.+-.
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~----------------------~~~~d~~~Aiagl~Fl~~~  103 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAM----------------------SFPGDLSDAIAGLIFLEYK  103 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccc----------------------ccCCccccceeeeEeeccc
Confidence            356789999999999999999999998753221111000                      0000123455555554321


Q ss_pred             ------CEEEEEeCCCeEEEEeccCC-----ceeEEee--C-CCccEEEEEEecCCCEEEEEECCCc-----------EE
Q 006220          434 ------DFILSSSADTTIRLWSTKLN-----ANLVCYK--G-HNYPVWDVQFNPQGHYFASSSHDRT-----------AR  488 (656)
Q Consensus       434 ------~~L~s~s~Dg~I~lwd~~~~-----~~~~~~~--~-h~~~V~~l~~sp~~~~l~sgs~Dg~-----------i~  488 (656)
                            ..|++-..+|.++-|-+..+     +....+.  . +...|.++.|+|..+.|++||....           +.
T Consensus       104 ~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLt  183 (282)
T PF15492_consen  104 KSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLT  183 (282)
T ss_pred             cccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCce
Confidence                  24666667787777765332     2222322  2 3668999999999888888874322           22


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      .|.+-+..|-....         . ..+...-....   +-.+|.+-+.............|..|..||||..||+...+
T Consensus       184 aWRiL~~~Pyyk~v---------~-~~~~~~~~~~~---~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~s  250 (282)
T PF15492_consen  184 AWRILSDSPYYKQV---------T-SSEDDITASSK---RRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFS  250 (282)
T ss_pred             EEEEcCCCCcEEEc---------c-ccCcccccccc---ccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcC
Confidence            22222211111100         0 00000111111   11233333222222122345689999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEeeeCC
Q 006220          569 GTIMMWDLASGRCVTPLMGH  588 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~~h  588 (656)
                      |.|.+|++.+-++...+.-+
T Consensus       251 G~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  251 GSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             CeEEEEecCcchhhcccchh
Confidence            99999999988777766543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=7.4e-07  Score=97.42  Aligned_cols=180  Identities=14%  Similarity=0.257  Sum_probs=130.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ..++|++++  +++||.|+.+|.|++++.+..                             . .....|+..      ..
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------------~-~~~~~~s~~------~~   81 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------------P-KTNFDHSSS------IL   81 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCc-----------------------------c-ccccccccc------cc
Confidence            457777775  678999999999999997741                             1 222234443      56


Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC-----CCEEEEEECCCcEEEEECC---CCceeEEecC
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-----GHYFASSSHDRTARIWSMD---RIQPLRIMAG  503 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~l~sgs~Dg~i~lwd~~---~~~~~~~~~~  503 (656)
                      +|.+++|||.||+|.|-.+.+.+....+. ...++.+++++|+     ...|++||.-| +.++.-.   ....+ ....
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~  158 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSE  158 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeec
Confidence            79999999999999999999888777666 4568999999997     56799999888 7776532   22222 4455


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC------eEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM------ILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~------i~~l~~sp~g~~L~s~~~dg~I~iwD~~  577 (656)
                      ..++|.++.|.  |+++|-++.+ -|++||+.+++.+..+......      -..+.|.++.+ |+.| ...+|+|..++
T Consensus       159 ~eG~I~~i~W~--g~lIAWand~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  159 GEGPIHSIKWR--GNLIAWANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK  233 (846)
T ss_pred             CccceEEEEec--CcEEEEecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence            67899999995  6788888765 4899999988777655433222      23577776654 4444 44578888887

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.67  E-value=3e-05  Score=80.84  Aligned_cols=196  Identities=14%  Similarity=0.137  Sum_probs=121.6

Q ss_pred             EccCCCEEEEEeC----------CCeEEEEeccCCceeEEeeCC-------CccEEEEEEecCCCEEEEEE-C-CCcEEE
Q 006220          429 FSPLGDFILSSSA----------DTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSS-H-DRTARI  489 (656)
Q Consensus       429 ~spd~~~L~s~s~----------Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~sgs-~-Dg~i~l  489 (656)
                      +|||++.|+.+..          +..|.+||..+.+.+..+...       ...-..++++|+|+++++.. . +..+.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998876655          789999999999998777642       22234789999999998776 3 789999


Q ss_pred             EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeE----EEEecCCCCeE-EEEEcC-CCCEE
Q 006220          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECV----RIFIGHRSMIL-SLAMSP-DGRYM  562 (656)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~~~----~~~~~h~~~i~-~l~~sp-~g~~L  562 (656)
                      .|+.+++.+..+.... ...-...+.+..+  +-+.||......+.+ |+..    ..|.+...++. .-.|++ +|+++
T Consensus       133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~  209 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV  209 (352)
T ss_pred             EECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence            9999999888776421 1222222222222  222344444433321 2211    11111111110 014456 88888


Q ss_pred             EEEECCCcEEEEeCCCC-----eeeEeeeC-------CCccEEEEEEcCCCCEEEEEE----------CCCcEEEEeCCC
Q 006220          563 ASGDEDGTIMMWDLASG-----RCVTPLMG-------HTSCVWTLAYSCEGSLLASGS----------ADCTVKLWDVTT  620 (656)
Q Consensus       563 ~s~~~dg~I~iwD~~~~-----~~~~~~~~-------h~~~V~~l~~s~~~~~l~sgs----------~Dg~I~iWd~~~  620 (656)
                      +.... |.|.+.|+...     .....+..       ..+.+.-++++++++.+....          ..+.|.++|..+
T Consensus       210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t  288 (352)
T TIGR02658       210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT  288 (352)
T ss_pred             EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence            88776 99999996432     22222211       223445599999999887743          225799999998


Q ss_pred             CCceeecc
Q 006220          621 STKVLKTE  628 (656)
Q Consensus       621 ~~~~~~~~  628 (656)
                      .+.+....
T Consensus       289 ~kvi~~i~  296 (352)
T TIGR02658       289 GKRLRKIE  296 (352)
T ss_pred             CeEEEEEe
Confidence            88776554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=2.8e-07  Score=94.28  Aligned_cols=251  Identities=15%  Similarity=0.161  Sum_probs=174.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      |...|+.+. ..-.+++.+++.||.++.|.-...                         .....+.-+..|-+.|.+++.
T Consensus         8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~i-------------------------sGvEfVKhFraHL~~I~sl~~   61 (558)
T KOG0882|consen    8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRI-------------------------SGVEFVKHFRAHLGVILSLAV   61 (558)
T ss_pred             ccceeeeEe-eehhheEEeeecchhhhhcCCCCc-------------------------cceeehhhhHHHHHHHHhhhc
Confidence            444455443 345789999999999999985420                         011233446678899999999


Q ss_pred             ccCCCEEEEEeC-CCeEEEEeccCCceeEEeeCCCccEEEEEEecCC---CEEEEE-ECCCcEEEEECCCCc-e-eEEec
Q 006220          430 SPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG---HYFASS-SHDRTARIWSMDRIQ-P-LRIMA  502 (656)
Q Consensus       430 spd~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~---~~l~sg-s~Dg~i~lwd~~~~~-~-~~~~~  502 (656)
                      +-++..+.|++. |..++++|+.+...+.-++.-.-|=.+-.+...|   ..++++ -.+|.+.++|-.... + ...-.
T Consensus        62 S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk  141 (558)
T KOG0882|consen   62 SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK  141 (558)
T ss_pred             cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence            999999999777 9999999998766554333222221111122223   133333 367899999975443 2 33334


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC------CeeE---------EEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------GECV---------RIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~------~~~~---------~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      -|.++|.++.+.|.+..+++....|.|.-|....      .+..         ..+.......+++.|+|+|..+.+-+.
T Consensus       142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~  221 (558)
T KOG0882|consen  142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP  221 (558)
T ss_pred             cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence            6999999999999999999999999999998762      1111         112234567889999999999999999


Q ss_pred             CCcEEEEeCCCCeeeEeee--------------------------------CCC-ccEEEEEEcCCCCEEEEEECCCcEE
Q 006220          568 DGTIMMWDLASGRCVTPLM--------------------------------GHT-SCVWTLAYSCEGSLLASGSADCTVK  614 (656)
Q Consensus       568 dg~I~iwD~~~~~~~~~~~--------------------------------~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~  614 (656)
                      |..|+++++.+|+.+..+.                                .|. ..-+.+.|...|++|+-|+-=| |+
T Consensus       222 DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ik  300 (558)
T KOG0882|consen  222 DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IK  300 (558)
T ss_pred             ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EE
Confidence            9999999999887654331                                122 2234677888899998887654 88


Q ss_pred             EEeCCCCCceeec
Q 006220          615 LWDVTTSTKVLKT  627 (656)
Q Consensus       615 iWd~~~~~~~~~~  627 (656)
                      |.++.+++....+
T Consensus       301 vin~~tn~v~ri~  313 (558)
T KOG0882|consen  301 VINLDTNTVVRIL  313 (558)
T ss_pred             EEEeecCeEEEEe
Confidence            9999888776543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.63  E-value=1.5e-06  Score=94.28  Aligned_cols=247  Identities=12%  Similarity=0.094  Sum_probs=167.5

Q ss_pred             eeCCCCeEEEEEcCC------------CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeE
Q 006220          348 INTHNGLNCASISQD------------GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT  415 (656)
Q Consensus       348 ~~~~~~V~~l~fs~d------------g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (656)
                      -.|...|+.+.|.|-            .-+||++...|.|.+||....                            ....
T Consensus        52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~----------------------------s~~~  103 (1062)
T KOG1912|consen   52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA----------------------------SVIN  103 (1062)
T ss_pred             ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh----------------------------hhhh
Confidence            345577999999862            125788888999999998641                            1233


Q ss_pred             EeecCccCEEEEEEcc---CC-CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEE
Q 006220          416 LYQGHSGPVYSASFSP---LG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW  490 (656)
Q Consensus       416 ~l~~h~~~V~~l~~sp---d~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lw  490 (656)
                      .+..|..+|..++|-+   ++ ..|+.-....+|.+|+..+|+....+.-......|+.+.| +.+.|..-+..|.+.+-
T Consensus       104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~  183 (1062)
T KOG1912|consen  104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC  183 (1062)
T ss_pred             hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence            4566888999999976   33 3566667778999999999999988877677788899999 56667777777877777


Q ss_pred             ECCC-------CceeEEecCCCC------------C-------------eeEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 006220          491 SMDR-------IQPLRIMAGHLS------------D-------------VDCVRWHINCNYIATGSSDKTVRLWDVSSGE  538 (656)
Q Consensus       491 d~~~-------~~~~~~~~~~~~------------~-------------V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~  538 (656)
                      +.-.       ++...+-..|..            .             ...++|+|.-+.++...-...+.++|++-..
T Consensus       184 ~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~  263 (1062)
T KOG1912|consen  184 KDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC  263 (1062)
T ss_pred             eccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc
Confidence            6531       223333333322            0             1135678866666666678899999999888


Q ss_pred             eEEEEecCCCCeEEEEEcCCCC--EEEEEECCCcEEEEeCCCCe----------------eeEeeeC-CCccEEEEEEcC
Q 006220          539 CVRIFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLASGR----------------CVTPLMG-HTSCVWTLAYSC  599 (656)
Q Consensus       539 ~~~~~~~h~~~i~~l~~sp~g~--~L~s~~~dg~I~iwD~~~~~----------------~~~~~~~-h~~~V~~l~~s~  599 (656)
                      ++....-..+.+.-+.+-|+++  .|+++..||.+.+|-.+...                .+..+.. ..-.+......|
T Consensus       264 ~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cP  343 (1062)
T KOG1912|consen  264 CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCP  343 (1062)
T ss_pred             eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCC
Confidence            8888877777777788888764  79999999999999765421                1111110 011112222334


Q ss_pred             C-CCEEEEEECCCcEEEEeCCCCC
Q 006220          600 E-GSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       600 ~-~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      . ...++.--.+|.+.+|.+.+++
T Consensus       344 s~~sa~avl~s~g~~~~w~l~~~r  367 (1062)
T KOG1912|consen  344 STPSALAVLYSSGDSTFWQLSNGR  367 (1062)
T ss_pred             CChhhhhhhhhcchhHHHhhhcCC
Confidence            3 3344444567888999998654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.62  E-value=3.2e-07  Score=87.75  Aligned_cols=163  Identities=18%  Similarity=0.235  Sum_probs=107.9

Q ss_pred             EeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee-EEeeCCCccEEEEEEecCCCEEEEEE-----CCCcEEE
Q 006220          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQGHYFASSS-----HDRTARI  489 (656)
Q Consensus       416 ~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~sp~~~~l~sgs-----~Dg~i~l  489 (656)
                      .+.-|+++-.+-..+-.+..++++..||.+.+++.+.-..+ ..+..-...-.+.+....++.+.++.     .-+..+.
T Consensus        84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a  163 (319)
T KOG4714|consen   84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYA  163 (319)
T ss_pred             eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceee
Confidence            33355554444444445677999999999999997742111 11111111122333444555555543     2245667


Q ss_pred             EECCCCceeEEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCe-eEEEEecCCCCeEEEEEcC-CCCEEEEEE
Q 006220          490 WSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSP-DGRYMASGD  566 (656)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~-~~~~~~~h~~~i~~l~~sp-~g~~L~s~~  566 (656)
                      |+++..+....-......|.+++-||.. +.+++|+.||.+-+||.++.. ++..+..|+.+|..+-|+| ++..|++++
T Consensus       164 ~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s  243 (319)
T KOG4714|consen  164 NTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS  243 (319)
T ss_pred             ecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec
Confidence            7776544433333333459999999854 566788999999999999874 3455678999999999999 578999999


Q ss_pred             CCCcEEEEeCCC
Q 006220          567 EDGTIMMWDLAS  578 (656)
Q Consensus       567 ~dg~I~iwD~~~  578 (656)
                      +||.+..||..+
T Consensus       244 edGslw~wdas~  255 (319)
T KOG4714|consen  244 EDGSLWHWDAST  255 (319)
T ss_pred             CCCcEEEEcCCC
Confidence            999999999754

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.56  E-value=1.6e-06  Score=95.80  Aligned_cols=148  Identities=16%  Similarity=0.288  Sum_probs=117.2

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC---------CCcEEEEECC
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---------DRTARIWSMD  493 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~---------Dg~i~lwd~~  493 (656)
                      .|.-+..  +++++.+|...|+|.+-|.++.+.++.+..|++.|.++..  .|+.+++||.         |..|+|||++
T Consensus       179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhh
Confidence            4655555  4789999999999999999999999999999999987666  5899999984         6678999998


Q ss_pred             CCceeEEecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCC---C-eeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220          494 RIQPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSS---G-ECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       494 ~~~~~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~---~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      ..+.+.-+.-+.++ .-+.|+|. ...+++++..|.+.+.|..+   . .-+..+....+.+..+++|++|+.|+.|..+
T Consensus       255 mmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~  333 (1118)
T KOG1275|consen  255 MMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE  333 (1118)
T ss_pred             hhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence            87766555544333 66788885 45788888999999999432   2 1233334445569999999999999999999


Q ss_pred             CcEEEEe
Q 006220          569 GTIMMWD  575 (656)
Q Consensus       569 g~I~iwD  575 (656)
                      |.|.+|-
T Consensus       334 g~v~~wa  340 (1118)
T KOG1275|consen  334 GHVNLWA  340 (1118)
T ss_pred             CcEeeec
Confidence            9999997

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.56  E-value=0.00012  Score=73.79  Aligned_cols=228  Identities=16%  Similarity=0.163  Sum_probs=151.1

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCc-EEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          353 GLNCASISQ-DGSLVAGGFSDSS-LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       353 ~V~~l~fs~-dg~~La~g~~dg~-I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ....++.+| ++..+|.+-.-|. ..+||..+........                    ...-+.+.||.      .||
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~--------------------a~~gRHFyGHg------~fs   59 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW--------------------APPGRHFYGHG------VFS   59 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc--------------------CCCCCEEecCE------EEc
Confidence            345677888 5666777766665 6788887643322111                    01223455664      699


Q ss_pred             cCCCEEEEEeC-----CCeEEEEecc-CCceeEEeeCCCccEEEEEEecCCCEEEEEEC------------------CCc
Q 006220          431 PLGDFILSSSA-----DTTIRLWSTK-LNANLVCYKGHNYPVWDVQFNPQGHYFASSSH------------------DRT  486 (656)
Q Consensus       431 pd~~~L~s~s~-----Dg~I~lwd~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~------------------Dg~  486 (656)
                      +||++|++.-.     .|.|-|||.. +...+..+..|.-.-..+.+.|+|..|+++-.                  +.+
T Consensus        60 ~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps  139 (305)
T PF07433_consen   60 PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS  139 (305)
T ss_pred             CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence            99999987644     4789999999 66778888888777788999999988777631                  233


Q ss_pred             EEEEECCCCceeEE--e--cCCCCCeeEEEEcCCCCEEEEEECCC-------cEEEEeCCCCeeEEEEe-------cCCC
Q 006220          487 ARIWSMDRIQPLRI--M--AGHLSDVDCVRWHINCNYIATGSSDK-------TVRLWDVSSGECVRIFI-------GHRS  548 (656)
Q Consensus       487 i~lwd~~~~~~~~~--~--~~~~~~V~~v~~~p~~~~l~tgs~dg-------~V~iwd~~~~~~~~~~~-------~h~~  548 (656)
                      +...|..+++.+..  +  ..|...|..+++.++|..++..-..|       -|-+++  .+..+..+.       .-.+
T Consensus       140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~  217 (305)
T PF07433_consen  140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNG  217 (305)
T ss_pred             eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCC
Confidence            55556667766655  3  23777899999999987665543322       233333  233232222       2346


Q ss_pred             CeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCc
Q 006220          549 MILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT  612 (656)
Q Consensus       549 ~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~  612 (656)
                      .+-+|+++++|.++++.+ ..|.+.+||..+++.+....-.  .+..++-.+++ +++|.+ .|.
T Consensus       218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG-~G~  278 (305)
T PF07433_consen  218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSG-QGQ  278 (305)
T ss_pred             ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCC-Ccc
Confidence            799999999998876555 6778999999999988765433  35567766666 555544 444

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=4.4e-07  Score=92.87  Aligned_cols=209  Identities=14%  Similarity=0.173  Sum_probs=153.1

Q ss_pred             cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccC--C-ceeEEeeCCCccEEEEEEecCCCEEEEEEC-CCcEEEEECCC
Q 006220          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL--N-ANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDR  494 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~--~-~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~lwd~~~  494 (656)
                      -|...|+.+.-. -.+++.+++.||.++.|.-..  + +-+..+..|...|.+++.+-++..+.|++. |..++++|+.+
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            377777776554 467999999999999997543  1 234556778899999999999999999887 99999999987


Q ss_pred             CceeEEecCC--CCCeeEEEEcCCC--CEEEEE-ECCCcEEEEeCCCCeeE--EEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          495 IQPLRIMAGH--LSDVDCVRWHINC--NYIATG-SSDKTVRLWDVSSGECV--RIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       495 ~~~~~~~~~~--~~~V~~v~~~p~~--~~l~tg-s~dg~V~iwd~~~~~~~--~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      ...+..+...  .+.+.++ .++..  ..|+++ -.+|.+.++|-....+.  ..-.-|..+|.++.+++-+..+++...
T Consensus        86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence            6655443321  1222222 12221  134443 36789999998765432  333458999999999999999999999


Q ss_pred             CCcEEEEeCCC------CeeeEe---------eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220          568 DGTIMMWDLAS------GRCVTP---------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       568 dg~I~iwD~~~------~~~~~~---------~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      .|.|.-|....      .+....         +........++.|+|+|..+.+-+.|..|+++++.+++.++...+
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence            99999998752      111111         122345678999999999999999999999999999998877765

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.54  E-value=2.2e-06  Score=92.09  Aligned_cols=201  Identities=17%  Similarity=0.190  Sum_probs=127.2

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      ++-+|...|.-+.|+.+.+.|-+...+|.|.||-+-.+..-.                          -..-....+-|.
T Consensus        66 tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E--------------------------EMiNnRnKSvV~  119 (1189)
T KOG2041|consen   66 TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE--------------------------EMINNRNKSVVV  119 (1189)
T ss_pred             hhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHH--------------------------HHhhCcCccEEE
Confidence            578899999999999999999999999999999987522110                          000112346688


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCcee-EEeeC-------------------------------------------
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKG-------------------------------------------  461 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~-------------------------------------------  461 (656)
                      +++|+.+|..++....||.|.+=+++..... ..+++                                           
T Consensus       120 SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~V  199 (1189)
T KOG2041|consen  120 SMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEV  199 (1189)
T ss_pred             EEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEE
Confidence            9999999998888888887766554421110 00000                                           


Q ss_pred             --------CCccEEEEEEe--------cCCCEEEEEECCCcEEEEECCC-CceeEEecCCCCCeeEEEEcCCCCEEEEEE
Q 006220          462 --------HNYPVWDVQFN--------PQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGS  524 (656)
Q Consensus       462 --------h~~~V~~l~~s--------p~~~~l~sgs~Dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs  524 (656)
                              ....|-.+.|.        |+...|+++-.+|.+.+..-.+ ..|+..-.+  -.+....|+++|..|++++
T Consensus       200 n~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG  277 (1189)
T KOG2041|consen  200 NGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCG  277 (1189)
T ss_pred             eeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEcc
Confidence                    00112233332        2445566666666655553322 223322222  4577889999999999887


Q ss_pred             CC---------CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          525 SD---------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       525 ~d---------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      .+         +.|.+|. .-|..+.+++.....|+.++|-..|-.++.+- |+.|.+=++
T Consensus       278 ~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanI  336 (1189)
T KOG2041|consen  278 NDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANI  336 (1189)
T ss_pred             CcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEee
Confidence            54         2455555 35778888888888999999987776555543 444444333

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=1.8e-05  Score=87.38  Aligned_cols=207  Identities=10%  Similarity=0.090  Sum_probs=138.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC-EEEEEEcc
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-VYSASFSP  431 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~l~~sp  431 (656)
                      .|+|  |++.+..+|.|+.+|.|.+.+-.                             ......+..+... |..+-...
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-----------------------------~~~~~~fqa~~~siv~~L~~~~   75 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSS-----------------------------FQLIRGFQAYEQSIVQFLYILN   75 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEeccc-----------------------------ceeeehheecchhhhhHhhccc
Confidence            4554  56888999999999999887743                             1222445555555 44443333


Q ss_pred             CCCEEEEEeCCC-----eEEEEeccCC------cee--EEeeC-----CCccEEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220          432 LGDFILSSSADT-----TIRLWSTKLN------ANL--VCYKG-----HNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (656)
Q Consensus       432 d~~~L~s~s~Dg-----~I~lwd~~~~------~~~--~~~~~-----h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~  493 (656)
                      +..+|++.+.|+     .|++|+++.-      .++  ..+.+     ...|+.+++.+.+-..+|+|-.+|.|.++.-+
T Consensus        76 ~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD  155 (933)
T KOG2114|consen   76 KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD  155 (933)
T ss_pred             CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc
Confidence            346788877765     4899998632      222  11112     35678999999998999999999999998532


Q ss_pred             ----CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220          494 ----RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       494 ----~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~~~~~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                          .+...........+|+.+++..++..++.......|.+|.+....+ ......|..++.|-.|++....+++++. 
T Consensus       156 i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-  234 (933)
T KOG2114|consen  156 ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-  234 (933)
T ss_pred             chhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-
Confidence                2333333334567899999998887733333445799999874442 4446677789999999986554555543 


Q ss_pred             CcEEEEeCCCCeeeEeee-CCCcc
Q 006220          569 GTIMMWDLASGRCVTPLM-GHTSC  591 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~-~h~~~  591 (656)
                      ..+.+||....++...+. +|...
T Consensus       235 e~l~fY~sd~~~~cfaf~~g~kk~  258 (933)
T KOG2114|consen  235 EFLYFYDSDGRGPCFAFEVGEKKE  258 (933)
T ss_pred             ceEEEEcCCCcceeeeecCCCeEE
Confidence            469999987655555555 66543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.50  E-value=1.5e-05  Score=91.22  Aligned_cols=241  Identities=15%  Similarity=0.192  Sum_probs=147.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      ..+.|.++.|-.++.-++.++..|.|.+-|..+..                             ......-.+.|.+++|
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-----------------------------~eivg~vd~GI~aasw  117 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE-----------------------------LEIVGNVDNGISAASW  117 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccc-----------------------------eeeeeeccCceEEEee
Confidence            34579999999999999999999999998765411                             1111223478999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC-----CccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecC
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-----NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAG  503 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~  503 (656)
                      |||.+.++..+..+++.+-.- +...+....-+     .+..-.+-|......|= |+ .|....-+.... +...... 
T Consensus       118 S~Dee~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfr-gs-~gr~~~~~~~~~ek~~~~~~-  193 (1265)
T KOG1920|consen  118 SPDEELLALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFR-GS-EGRQAARQKIEKEKALEQIE-  193 (1265)
T ss_pred             cCCCcEEEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceeee-cc-hhhhcccccccccccccchh-
Confidence            999999999988887766432 23333222111     11222333433222221 11 111111111100 0001111 


Q ss_pred             CCCCeeEEEEcCCCCEEEEE-----ECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE---ECCCcEEEEe
Q 006220          504 HLSDVDCVRWHINCNYIATG-----SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG---DEDGTIMMWD  575 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tg-----s~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~---~~dg~I~iwD  575 (656)
                      -.+.=+.|.|--+|.++|+.     ...+.|++||.. |..-.+-....+--.+++|-|.|.++++-   ++|+.|.+|.
T Consensus       194 ~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE  272 (1265)
T KOG1920|consen  194 QDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE  272 (1265)
T ss_pred             hccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe
Confidence            12334578999999999983     233799999976 54433333333445689999999999985   3566799998


Q ss_pred             CC---CCeeeEeeeCCCccEEEEEEcCCCCEEEE---EECCCcEEEEeCCCCCce
Q 006220          576 LA---SGRCVTPLMGHTSCVWTLAYSCEGSLLAS---GSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       576 ~~---~~~~~~~~~~h~~~V~~l~~s~~~~~l~s---gs~Dg~I~iWd~~~~~~~  624 (656)
                      -+   .|.....+......|..++|+.++.+|++   ......|++|-+.+-.--
T Consensus       273 rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWY  327 (1265)
T KOG1920|consen  273 RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWY  327 (1265)
T ss_pred             cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEE
Confidence            43   22333333344455999999999999988   444445999998876543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.50  E-value=2.4e-06  Score=94.43  Aligned_cols=180  Identities=13%  Similarity=0.131  Sum_probs=136.5

Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEE
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~  512 (656)
                      +..++.|+-...+..+|+++.+......-..+.|.-++.  +++++.+|...|+|.+-|..+.+.+..+..|.+.|..+.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            455677777777888999887776665544545655554  578999999999999999999999999999999988765


Q ss_pred             EcCCCCEEEEEE---------CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCC---CC
Q 006220          513 WHINCNYIATGS---------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLA---SG  579 (656)
Q Consensus       513 ~~p~~~~l~tgs---------~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~---~~  579 (656)
                      .  .|+.|++++         .|..|.+||+|.-+.+.-+.-+.++ .-+.|.|. ...+++++..|...+-|..   .-
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP  301 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP  301 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence            4  688888876         3567899999987666544444444 45678885 3467788888999999943   22


Q ss_pred             e-eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          580 R-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       580 ~-~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      . .+..+......+.++++|++++.++.|..+|.|.+|.
T Consensus       302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            1 1222223345599999999999999999999999998

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.45  E-value=6.4e-07  Score=61.85  Aligned_cols=39  Identities=62%  Similarity=1.108  Sum_probs=37.1

Q ss_pred             CeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (656)
Q Consensus       537 ~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD  575 (656)
                      |+++.++.+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.45  E-value=5.6e-07  Score=62.14  Aligned_cols=39  Identities=46%  Similarity=0.962  Sum_probs=37.0

Q ss_pred             CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      |+++..+.+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.45  E-value=0.00016  Score=73.04  Aligned_cols=202  Identities=14%  Similarity=0.129  Sum_probs=143.8

Q ss_pred             EEEEEEcc-CCCEEEEEeCCCe-EEEEeccCCceeEEeeCCCccE--EEEEEecCCCEEEEEE-----CCCcEEEEECC-
Q 006220          424 VYSASFSP-LGDFILSSSADTT-IRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSS-----HDRTARIWSMD-  493 (656)
Q Consensus       424 V~~l~~sp-d~~~L~s~s~Dg~-I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~sgs-----~Dg~i~lwd~~-  493 (656)
                      ...++.+| ....++.+-.-|+ ..+||..+++....+......-  =.-+||++|++|++.-     ..|.|-|||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            34577888 4455666666665 6789999888876654322211  1357999999999874     45899999998 


Q ss_pred             CCceeEEecCCCCCeeEEEEcCCCCEEEEE------------------ECCCcEEEEeCCCCeeEEEEe----cCCCCeE
Q 006220          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATG------------------SSDKTVRLWDVSSGECVRIFI----GHRSMIL  551 (656)
Q Consensus       494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg------------------s~dg~V~iwd~~~~~~~~~~~----~h~~~i~  551 (656)
                      +.+.+..+..|.-....+.+.|+|..|+++                  +.+..+.+.|..+|+.+....    .|.-.|.
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            667778888777777788999999887775                  234567777888998877643    3777899


Q ss_pred             EEEEcCCCCEEEEEECCCc-------EEEEeCCCCeeeEeee-------CCCccEEEEEEcCCCCEEEEEE-CCCcEEEE
Q 006220          552 SLAMSPDGRYMASGDEDGT-------IMMWDLASGRCVTPLM-------GHTSCVWTLAYSCEGSLLASGS-ADCTVKLW  616 (656)
Q Consensus       552 ~l~~sp~g~~L~s~~~dg~-------I~iwD~~~~~~~~~~~-------~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iW  616 (656)
                      .+++.++|..++..-..|-       |-+++.  +..+..+.       .-.+.|-+|+++.++..+++.+ .-|.+.+|
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            9999999987777654442       444443  33233222       2346788999999998776555 56789999


Q ss_pred             eCCCCCceeec
Q 006220          617 DVTTSTKVLKT  627 (656)
Q Consensus       617 d~~~~~~~~~~  627 (656)
                      |..++..+...
T Consensus       245 d~~tg~~~~~~  255 (305)
T PF07433_consen  245 DAATGRLLGSV  255 (305)
T ss_pred             ECCCCCEeecc
Confidence            99998876554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.44  E-value=1.3e-05  Score=87.94  Aligned_cols=224  Identities=15%  Similarity=0.177  Sum_probs=147.1

Q ss_pred             eEEEEEcCCCCEEEEEe----CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          354 LNCASISQDGSLVAGGF----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~----~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      -+-.+|+|...++|+++    ..|+|.||--...                           .......   .-.+++++|
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGE---------------------------Pqr~Vt~---P~hatSLCW   67 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGE---------------------------PQRDVTY---PVHATSLCW   67 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEecCCC---------------------------CCccccc---ceehhhhcc
Confidence            34457899999988875    3577888753321                           0000111   123456999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE----------
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR----------  499 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~----------  499 (656)
                      +|..-.|++|-.-|.+.+|...+.+.-.....|..+|..+.||++|..++++..-|.+.+|..+....+.          
T Consensus        68 Hpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~  147 (1416)
T KOG3617|consen   68 HPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELN  147 (1416)
T ss_pred             ChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhh
Confidence            9988888899999999999988776666666799999999999999999999999999999876221110          


Q ss_pred             ------Ee-----------------cCCCCCee-EEEE-------------cCCCCEEEEEECCCcEEEEeCCCCeeEEE
Q 006220          500 ------IM-----------------AGHLSDVD-CVRW-------------HINCNYIATGSSDKTVRLWDVSSGECVRI  542 (656)
Q Consensus       500 ------~~-----------------~~~~~~V~-~v~~-------------~p~~~~l~tgs~dg~V~iwd~~~~~~~~~  542 (656)
                            .+                 .+..+.+. -.-|             .|+|..++.++.+|+|+..|- +|.+..+
T Consensus       148 ~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V  226 (1416)
T KOG3617|consen  148 DQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTV  226 (1416)
T ss_pred             ceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcC-CCcEEEE
Confidence                  00                 01111111 0011             256777888889999988873 2222111


Q ss_pred             Ee-------------------------------------------------c-----------------------CCCCe
Q 006220          543 FI-------------------------------------------------G-----------------------HRSMI  550 (656)
Q Consensus       543 ~~-------------------------------------------------~-----------------------h~~~i  550 (656)
                      ..                                                 +                       ....+
T Consensus       227 ~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~  306 (1416)
T KOG3617|consen  227 HKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGI  306 (1416)
T ss_pred             EEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCce
Confidence            00                                                 0                       12358


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEeC-CCC------eeeEeeeC---CCccEEEEEEcCCCCEEEEEE
Q 006220          551 LSLAMSPDGRYMASGDEDGTIMMWDL-ASG------RCVTPLMG---HTSCVWTLAYSCEGSLLASGS  608 (656)
Q Consensus       551 ~~l~~sp~g~~L~s~~~dg~I~iwD~-~~~------~~~~~~~~---h~~~V~~l~~s~~~~~l~sgs  608 (656)
                      +|++++..+..|+.|...|.+.+|-- ..+      .-...+.+   ..+.|+.+.|.|--..++.-+
T Consensus       307 ~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~  374 (1416)
T KOG3617|consen  307 LCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT  374 (1416)
T ss_pred             EEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence            89999999999999999999999953 221      22233333   347899999998554444433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=2e-05  Score=80.07  Aligned_cols=204  Identities=16%  Similarity=0.197  Sum_probs=127.2

Q ss_pred             eEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEE
Q 006220          414 YTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWS  491 (656)
Q Consensus       414 ~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd  491 (656)
                      ...+.+|...|.+++|||..+ ++..++.+..|+|.|+.+..++..+..+ .++|+++|.-+. +++..|-..|.|.+||
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence            346778889999999999888 7889999999999999999988888877 789999999854 5677777999999999


Q ss_pred             CCCCc-------------eeEEec---------------------------------------CCCCCeeEEEEcCCCCE
Q 006220          492 MDRIQ-------------PLRIMA---------------------------------------GHLSDVDCVRWHINCNY  519 (656)
Q Consensus       492 ~~~~~-------------~~~~~~---------------------------------------~~~~~V~~v~~~p~~~~  519 (656)
                      ++...             ++..+.                                       +..+...++++++..+.
T Consensus       265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh  344 (463)
T KOG1645|consen  265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH  344 (463)
T ss_pred             ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence            98543             111100                                       00122233344443344


Q ss_pred             EEEEECCC-------cEE-EEeCCCCeeEEEE-ecC-CCCe------EEEEEcCCCCEEE-EEECCCcEEEEeCCCCeee
Q 006220          520 IATGSSDK-------TVR-LWDVSSGECVRIF-IGH-RSMI------LSLAMSPDGRYMA-SGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       520 l~tgs~dg-------~V~-iwd~~~~~~~~~~-~~h-~~~i------~~l~~sp~g~~L~-s~~~dg~I~iwD~~~~~~~  582 (656)
                      ++......       .|- --|-.+|..+-.. .++ .++-      ..+.-.++.++|+ .|+..+.+.+||..++..+
T Consensus       345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv  424 (463)
T KOG1645|consen  345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV  424 (463)
T ss_pred             EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence            43332210       000 0122233332111 112 1110      1122234455555 4566788999999999999


Q ss_pred             EeeeCCCccEEEEEEcC-CC-CEEEEEECCCcEEEEeCCC
Q 006220          583 TPLMGHTSCVWTLAYSC-EG-SLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       583 ~~~~~h~~~V~~l~~s~-~~-~~l~sgs~Dg~I~iWd~~~  620 (656)
                      .++.-. .+|..++... ++ .+|+.- .|..++|+...+
T Consensus       425 Q~l~~~-epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es  462 (463)
T KOG1645|consen  425 QTLALS-EPVLDICPNDTNGSSYLALL-TDDRVHIYKNES  462 (463)
T ss_pred             eecccC-cceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence            888543 7788777543 33 455554 466888887654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.37  E-value=7e-05  Score=74.54  Aligned_cols=180  Identities=16%  Similarity=0.134  Sum_probs=120.5

Q ss_pred             CCeEEEEeccCCceeEEeeCCCccEEEEE--EecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCE
Q 006220          442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQ--FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY  519 (656)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~--~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~  519 (656)
                      +|+|..||..+++.+....... .+....  ..+++.++++++.++.++.||..+++.+..+.. ...+.... ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence            6899999999999887775311 111122  333566788889999999999999998877764 22222211 234567


Q ss_pred             EEEEECCCcEEEEeCCCCeeEEEE-ecCC---CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCcc----
Q 006220          520 IATGSSDKTVRLWDVSSGECVRIF-IGHR---SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC----  591 (656)
Q Consensus       520 l~tgs~dg~V~iwd~~~~~~~~~~-~~h~---~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~----  591 (656)
                      +++++.++.|+.+|..+|+.+... ....   .....+.....+..++++..++.|..+|..+|+.+.........    
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            777778899999999999998874 3321   11222333334888899988999999999999998887654322    


Q ss_pred             ------EEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          592 ------VWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       592 ------V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                            +.+-....++ .+..++.+|.+.-+|+.+++...
T Consensus       159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w  197 (238)
T PF13360_consen  159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW  197 (238)
T ss_dssp             EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE
T ss_pred             eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE
Confidence                  1122222244 77777777754444999998655

...

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.29  E-value=0.00021  Score=76.28  Aligned_cols=257  Identities=12%  Similarity=0.105  Sum_probs=140.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc---ccccCC-------CCCCCCCCccccC---CC--CCceeeEEe
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQA---VSSGLQ-------GENDTTPREDIIG---PN--GRKRSYTLY  417 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~---~~~~~~-------~~~~~~~~~~~~~---~~--~~~~~~~~l  417 (656)
                      .|+++.|+++..-||+|...|.|.||.+.......   ......       ..+......++..   ++  ........+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58999999999999999999999999987532221   000000       0000000001111   11  113344556


Q ss_pred             ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe--eC------CCccEEEEEEec-----CC---CEEEEE
Q 006220          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY--KG------HNYPVWDVQFNP-----QG---HYFASS  481 (656)
Q Consensus       418 ~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~--~~------h~~~V~~l~~sp-----~~---~~l~sg  481 (656)
                      ....++|++++.| +=-+++.|..+|++.|.|++....+..-  ..      ....|.++.|+.     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            6678999999998 4569999999999999999866555431  11      234577888874     33   468889


Q ss_pred             ECCCcEEEEECCC---Cc----eeEEecCCCCCeeEEE-EcCC-C-------------------CEEEEEECCCcEEEEe
Q 006220          482 SHDRTARIWSMDR---IQ----PLRIMAGHLSDVDCVR-WHIN-C-------------------NYIATGSSDKTVRLWD  533 (656)
Q Consensus       482 s~Dg~i~lwd~~~---~~----~~~~~~~~~~~V~~v~-~~p~-~-------------------~~l~tgs~dg~V~iwd  533 (656)
                      ...|.+.+|.+.-   +.    .......+.+.|..+. ++.+ |                   +-++....+..+|++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            9999999998741   11    1112223445555443 3211 1                   2244445577899999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEc-----CCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC----ccEEEEEEcCCCCEE
Q 006220          534 VSSGECVRIFIGHRSMILSLAMS-----PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT----SCVWTLAYSCEGSLL  604 (656)
Q Consensus       534 ~~~~~~~~~~~~h~~~i~~l~~s-----p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~----~~V~~l~~s~~~~~l  604 (656)
                      .-+.+.........-.+..+.+-     ..+..|++-..+|.|+++.+..-+.+..+.-+.    ..+...+++++|..+
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~  321 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF  321 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence            98887766554332233344452     356788888999999999999998888776532    334566788999977


Q ss_pred             EEEECC
Q 006220          605 ASGSAD  610 (656)
Q Consensus       605 ~sgs~D  610 (656)
                      +-.+..
T Consensus       322 ~~~gps  327 (395)
T PF08596_consen  322 YWTGPS  327 (395)
T ss_dssp             EE-SSS
T ss_pred             EEeCcc
Confidence            766543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=6e-05  Score=83.45  Aligned_cols=193  Identities=15%  Similarity=0.190  Sum_probs=130.0

Q ss_pred             EEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCcc-EEEEEEecCCCEEEEEECCC-----cEEEEECCCC------
Q 006220          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP-VWDVQFNPQGHYFASSSHDR-----TARIWSMDRI------  495 (656)
Q Consensus       428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~sgs~Dg-----~i~lwd~~~~------  495 (656)
                      +|++.+..++.|+.+|.|.+.+-. .+.+..++.+... |..+......+++++.+.|+     .+++|+++..      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            467778899999999988887643 3344666766666 43333333346777777664     4899998642      


Q ss_pred             cee---EEec----CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC----CCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220          496 QPL---RIMA----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS----SGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       496 ~~~---~~~~----~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~----~~~~~~~~~~h~~~i~~l~~sp~g~~L~s  564 (656)
                      .++   +.+.    ....++.+++.|.+-+.+|+|-.+|.|..+.-.    .|........-..+|+.+++..++..++-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            233   2222    135678899999999999999999999988421    12222222234569999999999887333


Q ss_pred             EECCCcEEEEeCCCCee--eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          565 GDEDGTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      +.....|.+|.+. |+.  ...+..|..++.|-++++....+++++ +..|.+|+......
T Consensus       189 v~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  189 VATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGP  247 (933)
T ss_pred             EEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcce
Confidence            3334579999987 444  444667778889999987665455554 44788998875443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.27  E-value=0.00041  Score=74.60  Aligned_cols=111  Identities=21%  Similarity=0.304  Sum_probs=80.3

Q ss_pred             EEEEEec-CCCEEEEEE----CCCcE----EEEECCCCce--eEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          467 WDVQFNP-QGHYFASSS----HDRTA----RIWSMDRIQP--LRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDV  534 (656)
Q Consensus       467 ~~l~~sp-~~~~l~sgs----~Dg~i----~lwd~~~~~~--~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~  534 (656)
                      .++.||- +++.+.+..    .+|.+    .+|++...+.  +.... ...+.|.|++++|+...++.|+.||+|.+||.
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~  288 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT  288 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence            4677776 444555442    34432    3455544332  22111 56788999999999999999999999999998


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       535 ~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                      ..+....  ....-..+.++|+|+|.++++|+..|.+.+||+.-.
T Consensus       289 ~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  289 TRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            7774433  234456788999999999999999999999998643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.26  E-value=5.1e-05  Score=81.33  Aligned_cols=114  Identities=23%  Similarity=0.305  Sum_probs=80.6

Q ss_pred             CeeEEEEcC-CCCEEEEE----ECCCc----EEEEeCCCCeeEEE---EecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          507 DVDCVRWHI-NCNYIATG----SSDKT----VRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (656)
Q Consensus       507 ~V~~v~~~p-~~~~l~tg----s~dg~----V~iwd~~~~~~~~~---~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw  574 (656)
                      ...++.|+- +++.+.|.    +.+|.    -.+|++..++..+.   -....+.+.|++++|+...|+.|+.||+|.+|
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY  286 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence            345666664 33444442    23343    33566655433221   12467789999999999999999999999999


Q ss_pred             eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       575 D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      |...+...  +....-.++.++|+|+|.++++|+..|.+.+||+.-+.
T Consensus       287 D~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  287 DTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            98766332  33344557889999999999999999999999987543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.24  E-value=5.4e-07  Score=96.02  Aligned_cols=239  Identities=14%  Similarity=0.209  Sum_probs=147.9

Q ss_pred             CCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          352 NGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       352 ~~V~~l~fs~d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      ..+.|++++-+  ..++++|..+|.|.+-.+....                          ........+|..++++++|
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h--------------------------dSs~E~tp~~ar~Ct~lAw  110 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH--------------------------DSSAEVTPGYARPCTSLAW  110 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcc--------------------------cccceeccccccccccccc
Confidence            35777777654  4578999999999998876411                          0122345578889999999


Q ss_pred             ccCC-CEEEEEe----CCCeEEEEeccCCc--ee--EEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220          430 SPLG-DFILSSS----ADTTIRLWSTKLNA--NL--VCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (656)
Q Consensus       430 spd~-~~L~s~s----~Dg~I~lwd~~~~~--~~--~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~  499 (656)
                      ++-. ++|+.|-    .|..+.|||+.++-  +.  ..+.+ ......+++|-.+...+.+|...+.++++|++... .+
T Consensus       111 neLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~  189 (783)
T KOG1008|consen  111 NELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DS  189 (783)
T ss_pred             ccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hh
Confidence            9854 4566553    25679999998761  11  11222 33345588999888999999999999999998421 11


Q ss_pred             EecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEe-CCCCe-eEEEEecCC----CCeEEEEEcCCCC-EEEE-EECCCc
Q 006220          500 IMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWD-VSSGE-CVRIFIGHR----SMILSLAMSPDGR-YMAS-GDEDGT  570 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd-~~~~~-~~~~~~~h~----~~i~~l~~sp~g~-~L~s-~~~dg~  570 (656)
                      ...-.+..+..+...| .++|+++-. ||.|.+|| .++-+ ++..+....    ..+..++|+|... .+++ .-..++
T Consensus       190 ~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~t  268 (783)
T KOG1008|consen  190 VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSIT  268 (783)
T ss_pred             hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcce
Confidence            2222334566677788 777887665 99999999 44332 222222122    2488999999532 3444 446688


Q ss_pred             EEEEeCCCC--------eeeEeee-----CCC---ccEEEEEEcCCC--CEEEEEECCCcEEEEeC
Q 006220          571 IMMWDLASG--------RCVTPLM-----GHT---SCVWTLAYSCEG--SLLASGSADCTVKLWDV  618 (656)
Q Consensus       571 I~iwD~~~~--------~~~~~~~-----~h~---~~V~~l~~s~~~--~~l~sgs~Dg~I~iWd~  618 (656)
                      |+++|+..-        .......     .|.   ..|.++.|++..  ...+.+-..-++.-+++
T Consensus       269 Irlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V  334 (783)
T KOG1008|consen  269 IRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV  334 (783)
T ss_pred             EEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence            999998531        1111111     122   467778887744  23444444444444444

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.20  E-value=0.00026  Score=76.52  Aligned_cols=189  Identities=10%  Similarity=-0.032  Sum_probs=120.0

Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEE-EEEec--CCCEEEEEECCCcEEEEECCCCceeEEecCCCC---
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD-VQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS---  506 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-l~~sp--~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~---  506 (656)
                      +..++.++.+|.|..+|..+++.+..+......+.. ..-+|  .+..++.++.+|.+..+|..+++.+........   
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~  239 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA  239 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence            346677788899999999999988776532111000 00111  233567778899999999988876654331100   


Q ss_pred             ----CeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 006220          507 ----DVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (656)
Q Consensus       507 ----~V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~  580 (656)
                          ....+..+|  .+..+++++.+|.+..+|..+|+.+.....  +....+..  .+..|+.++.+|.+..+|..+|+
T Consensus       240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~  315 (394)
T PRK11138        240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGV  315 (394)
T ss_pred             cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence                001111122  355777888899999999999987765431  11112222  46678888899999999999998


Q ss_pred             eeEeeeCCC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          581 CVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       581 ~~~~~~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      .+-....-. ....+...  .+..|+.++.||.|.+.|..+++.....
T Consensus       316 ~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        316 ELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             EEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            765432211 11112222  2567888999999999999998876654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.16  E-value=6.2e-05  Score=82.74  Aligned_cols=106  Identities=11%  Similarity=0.230  Sum_probs=86.3

Q ss_pred             EEEEccCCCEEEEEeC----CCeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220          426 SASFSPLGDFILSSSA----DTTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~----Dg~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~  499 (656)
                      -.+|+|...++++++.    .|+|.||- ++|++..  .+.-   .+.+++|+|..-.++.|-.-|.+.+|...+.+.-.
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce---ehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence            3579998888887764    57888884 4455432  2222   24579999998889999899999999999887777


Q ss_pred             EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS  535 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~  535 (656)
                      ....|..+|..+.|+|+|+.++++..-|.|.+|...
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            777899999999999999999999999999999765

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.15  E-value=0.00032  Score=77.12  Aligned_cols=186  Identities=12%  Similarity=0.120  Sum_probs=116.4

Q ss_pred             CCCEEEEEeC-CCeEEEEeccCCceeEEeeC-CCccEEEEEEe--cCCCEEEEEE------------------CCCcEEE
Q 006220          432 LGDFILSSSA-DTTIRLWSTKLNANLVCYKG-HNYPVWDVQFN--PQGHYFASSS------------------HDRTARI  489 (656)
Q Consensus       432 d~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~s--p~~~~l~sgs------------------~Dg~i~l  489 (656)
                      ||++|+.-.. +..|-..+++..++-..+.. ....+.+++|-  |+..|+++++                  ..+.+.+
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv  219 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA  219 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence            6788887764 55666667666655433321 12223333332  3333333332                  2355667


Q ss_pred             EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEE----------------------------------------CCCcE
Q 006220          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS----------------------------------------SDKTV  529 (656)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs----------------------------------------~dg~V  529 (656)
                      .|.++.+....+... +....++++|+|.++++.+                                        .++.|
T Consensus       220 ID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V  298 (635)
T PRK02888        220 VDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV  298 (635)
T ss_pred             EECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence            777766555544422 2345667788888877664                                        12457


Q ss_pred             EEEeCCC----C-eeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCee------------eEeeeCCCcc
Q 006220          530 RLWDVSS----G-ECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC------------VTPLMGHTSC  591 (656)
Q Consensus       530 ~iwd~~~----~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~~------------~~~~~~h~~~  591 (656)
                      .+.|.++    + ..+..+. -......+.+||||+++++++ .+++|.|.|+.+.+.            +.+..--.+ 
T Consensus       299 ~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-  376 (635)
T PRK02888        299 PVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-  376 (635)
T ss_pred             EEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-
Confidence            7777776    3 3333333 334567899999999887755 589999999987553            333333223 


Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          592 VWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       592 V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      ....+|+++|....|-..|..|..|++..
T Consensus       377 PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        377 PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cceEEECCCCCEEEeEeecceeEEEehHH
Confidence            35678999999999999999999999976

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.15  E-value=0.00054  Score=78.84  Aligned_cols=218  Identities=17%  Similarity=0.227  Sum_probs=123.8

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--CCcccccccCCCCCCCCCCccccCCCCCceeeEEeec-----
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK--LGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-----  419 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----  419 (656)
                      ..+..++|.+++||||+..++..+..+++.+-.-.-  ........   .........    .-+.++..+.+.|     
T Consensus       105 vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~---d~~~~sk~v----~VGwGrkeTqfrgs~gr~  177 (1265)
T KOG1920|consen  105 VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDA---DDERKSKFV----NVGWGRKETQFRGSEGRQ  177 (1265)
T ss_pred             eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccc---ccccccccc----eecccccceeeecchhhh
Confidence            345678999999999999999998888876654321  11111000   000000000    0011111111111     


Q ss_pred             ----------------CccCEEEEEEccCCCEEEEE-----eCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEE
Q 006220          420 ----------------HSGPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF  478 (656)
Q Consensus       420 ----------------h~~~V~~l~~spd~~~L~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l  478 (656)
                                      -.+.=++|+|--||+++++.     .....|++||.+ +..-..-....+--.+++|-|.|..+
T Consensus       178 ~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~i  256 (1265)
T KOG1920|consen  178 AARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLI  256 (1265)
T ss_pred             cccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeE
Confidence                            11122468999999998873     233789999987 43322222233334579999999998


Q ss_pred             EEEE---CCCcEEEEECCC---CceeEEecCCCCCeeEEEEcCCCCEEEE---EECCCcEEEEeCCCCee----EEEEec
Q 006220          479 ASSS---HDRTARIWSMDR---IQPLRIMAGHLSDVDCVRWHINCNYIAT---GSSDKTVRLWDVSSGEC----VRIFIG  545 (656)
Q Consensus       479 ~sgs---~Dg~i~lwd~~~---~~~~~~~~~~~~~V~~v~~~p~~~~l~t---gs~dg~V~iwd~~~~~~----~~~~~~  545 (656)
                      ++-.   .|+.|.++.-+.   +.-...+......|..++|+.++..|++   ......|++|-+.+..-    ...+..
T Consensus       257 A~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~  336 (1265)
T KOG1920|consen  257 AAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ  336 (1265)
T ss_pred             eeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccc
Confidence            8864   566788886432   2222223333344899999999999988   44445599998876532    222221


Q ss_pred             CCCCeEEEEEcCCC-CEEEEEECCCcEEEEeC
Q 006220          546 HRSMILSLAMSPDG-RYMASGDEDGTIMMWDL  576 (656)
Q Consensus       546 h~~~i~~l~~sp~g-~~L~s~~~dg~I~iwD~  576 (656)
                        ...  +.|+|.. ..|..-..+|...++|+
T Consensus       337 --~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  337 --KAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             --ccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence              111  6777732 23333335666666665

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.13  E-value=0.00085  Score=73.91  Aligned_cols=180  Identities=14%  Similarity=0.031  Sum_probs=109.4

Q ss_pred             EEEccCCCEEEE-EeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-----------------------
Q 006220          427 ASFSPLGDFILS-SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-----------------------  482 (656)
Q Consensus       427 l~~spd~~~L~s-~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-----------------------  482 (656)
                      +=++|||+.+.. .-..+.+.+.|..+.+....+.--. ....+.++++|.++++.+                       
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            335566665432 2234566667766655544433222 223455666666655553                       


Q ss_pred             -----------------CCCcEEEEECCC-----CceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCee
Q 006220          483 -----------------HDRTARIWSMDR-----IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGEC  539 (656)
Q Consensus       483 -----------------~Dg~i~lwd~~~-----~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~  539 (656)
                                       .+++|.+.|..+     ...+..+. -......+.++|+|+++++++ .+.+|.+.|+.+.+.
T Consensus       277 ni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        277 NIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             chHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence                             234577777776     33444443 335567899999999987765 488999999987542


Q ss_pred             ------------EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC----------CeeeEeeeCCCccE-----
Q 006220          540 ------------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPLMGHTSCV-----  592 (656)
Q Consensus       540 ------------~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~----------~~~~~~~~~h~~~V-----  592 (656)
                                  +....--.+| ...+|.++|....|..-|..|..|++..          ...+.++.-|-.+.     
T Consensus       356 ~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~  434 (635)
T PRK02888        356 LFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHAS  434 (635)
T ss_pred             hhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeec
Confidence                        3333322233 4578999999888899999999999876          23444443333221     


Q ss_pred             EEEEEcCCCCEEEEEEC
Q 006220          593 WTLAYSCEGSLLASGSA  609 (656)
Q Consensus       593 ~~l~~s~~~~~l~sgs~  609 (656)
                      .+=.-.++|++|++...
T Consensus       435 ~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        435 MGETKEADGKWLVSLNK  451 (635)
T ss_pred             CCCcCCCCCCEEEEccc
Confidence            11223678888887653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.12  E-value=0.00053  Score=74.09  Aligned_cols=189  Identities=10%  Similarity=0.007  Sum_probs=121.1

Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeE-E
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC-V  511 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~-v  511 (656)
                      +..++.++.+|.+..+|..+++.+...............  .+..+++++.++.++.+|..+++.+..+......+.. .
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            566777888999999999999988776543321111112  2456777888999999999999888766532111100 0


Q ss_pred             EEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC-------CeEEEEEcC--CCCEEEEEECCCcEEEEeCCCCe
Q 006220          512 RWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-------MILSLAMSP--DGRYMASGDEDGTIMMWDLASGR  580 (656)
Q Consensus       512 ~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~-------~i~~l~~sp--~g~~L~s~~~dg~I~iwD~~~~~  580 (656)
                      .-+|  .+..++.++.+|.+..+|..+|+.+........       ....+..+|  .+..++.++.+|.+..+|..+|+
T Consensus       198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~  277 (394)
T PRK11138        198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ  277 (394)
T ss_pred             CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence            0011  234577788899999999999987665431110       011111223  25567777889999999999998


Q ss_pred             eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       581 ~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      .+-+...  +....+.  ..+..++.++.+|.+..+|..+++.....
T Consensus       278 ~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        278 IVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             EEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence            7655431  1111222  24567777888999999999888766543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.10  E-value=0.0012  Score=71.50  Aligned_cols=173  Identities=13%  Similarity=0.130  Sum_probs=94.7

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce-------eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEE-CC
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS-MD  493 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd-~~  493 (656)
                      +.|.++.|+.+ ..|+....||+++++|+. |..       +.........+....+..+|-.+++  .++.+.+.. ..
T Consensus        81 ~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~  156 (410)
T PF04841_consen   81 GRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNID  156 (410)
T ss_pred             CCEEEEEECCC-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCcc
Confidence            89999999874 556677789999999986 333       1111111222333344445533333  344444443 22


Q ss_pred             CCceeEEecCCCCCee---------E-EEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220          494 RIQPLRIMAGHLSDVD---------C-VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       494 ~~~~~~~~~~~~~~V~---------~-v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~  563 (656)
                      .....+.+..-.....         . ..++.+....+....++.+.+.+-...+.    ....+++..|++||+|++||
T Consensus       157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~iA  232 (410)
T PF04841_consen  157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKFIA  232 (410)
T ss_pred             ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCEEE
Confidence            1111111110000000         0 12333444444444455555433222111    11246899999999999999


Q ss_pred             EEECCCcEEEEeCCCCeeeEeeeCC-CccEEEEEEcCCCC
Q 006220          564 SGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGS  602 (656)
Q Consensus       564 s~~~dg~I~iwD~~~~~~~~~~~~h-~~~V~~l~~s~~~~  602 (656)
                      .-..+|.+.+.+..-.+.+..+... ......+.|+-+..
T Consensus       233 l~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  233 LFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             EEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence            9999999999987666666665543 34556777776543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.03  E-value=1.5e-06  Score=92.64  Aligned_cols=196  Identities=20%  Similarity=0.372  Sum_probs=133.1

Q ss_pred             cCEEEEEEccCCC--EEEEEeCCCeEEEEeccCCce--eEEeeCCCccEEEEEEec-CCCEEEEEE----CCCcEEEEEC
Q 006220          422 GPVYSASFSPLGD--FILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNP-QGHYFASSS----HDRTARIWSM  492 (656)
Q Consensus       422 ~~V~~l~~spd~~--~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp-~~~~l~sgs----~Dg~i~lwd~  492 (656)
                      ..+.|++++-+.+  .++.|..+|.|.+-..+...-  -....++..++++++|++ |.+.+|.|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            4466777765544  678899999999988764322  344567888999999999 455566653    4568999999


Q ss_pred             CCC--ceeE--Eec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCe-eEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 006220          493 DRI--QPLR--IMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSP-DGRYMASG  565 (656)
Q Consensus       493 ~~~--~~~~--~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~-~~~~~~~h~~~i~~l~~sp-~g~~L~s~  565 (656)
                      .+.  .|..  .+. +......+++|-.+.+.+.+|...+.+.++|++... ....+  .+..+..+..+| .+.|+++.
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence            876  2221  222 244567789999889999999999999999998432 22222  223456677888 67788776


Q ss_pred             ECCCcEEEEeC-CCC-eeeEeeeCCC----ccEEEEEEcCCC-CEEEEEE-CCCcEEEEeCCC
Q 006220          566 DEDGTIMMWDL-ASG-RCVTPLMGHT----SCVWTLAYSCEG-SLLASGS-ADCTVKLWDVTT  620 (656)
Q Consensus       566 ~~dg~I~iwD~-~~~-~~~~~~~~h~----~~V~~l~~s~~~-~~l~sgs-~Dg~I~iWd~~~  620 (656)
                      . ||.|.+||. +.- .++..+....    ..+..++|+|.. ..+++.. ..++|+.+|+..
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            6 999999993 322 2333332222    248999999953 3455555 457899999864

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.03  E-value=0.0088  Score=65.05  Aligned_cols=241  Identities=17%  Similarity=0.154  Sum_probs=133.1

Q ss_pred             eEEEEEcCCCCEEEEEe-CCC----cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeE-EeecCccCEEEE
Q 006220          354 LNCASISQDGSLVAGGF-SDS----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT-LYQGHSGPVYSA  427 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~-~dg----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~~l  427 (656)
                      +...++||||++||.+- ..|    .|+|+|+.++.                            ... .+.. .. ..++
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~----------------------------~l~d~i~~-~~-~~~~  175 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK----------------------------FLPDGIEN-PK-FSSV  175 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE----------------------------EEEEEEEE-EE-SEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc----------------------------CcCCcccc-cc-cceE
Confidence            44678999999999773 334    49999987521                            111 1111 11 1239


Q ss_pred             EEccCCCEEEEEeCCC-----------eEEEEeccCCcee--EEeeCCCcc--EEEEEEecCCCEEEEEECC----CcEE
Q 006220          428 SFSPLGDFILSSSADT-----------TIRLWSTKLNANL--VCYKGHNYP--VWDVQFNPQGHYFASSSHD----RTAR  488 (656)
Q Consensus       428 ~~spd~~~L~s~s~Dg-----------~I~lwd~~~~~~~--~~~~~h~~~--V~~l~~sp~~~~l~sgs~D----g~i~  488 (656)
                      .|.++++.|+....+.           .|+.|.+.+...-  ..+.....+  ...+..++++++++..+..    ..++
T Consensus       176 ~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~  255 (414)
T PF02897_consen  176 SWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVY  255 (414)
T ss_dssp             EECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEE
T ss_pred             EEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEE
Confidence            9999988776554332           3778887766442  555554433  5678899999997765422    3477


Q ss_pred             EEECCCC----ceeEEecCCCCCeeEEEEcCCCCEEEEEE---CCCcEEEEeCCCCee---EEEEecCCCCeEEEEEcCC
Q 006220          489 IWSMDRI----QPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPD  558 (656)
Q Consensus       489 lwd~~~~----~~~~~~~~~~~~V~~v~~~p~~~~l~tgs---~dg~V~iwd~~~~~~---~~~~~~h~~~i~~l~~sp~  558 (656)
                      +.++...    .....+......+....-+.++.+++...   ..+.|...++.+...   ...+..+...+.-..+...
T Consensus       256 ~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~  335 (414)
T PF02897_consen  256 LLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF  335 (414)
T ss_dssp             EEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE
T ss_pred             EEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE
Confidence            7788764    23444443444444433333444444332   346777778877652   3355556554333334444


Q ss_pred             CCEEEEE-ECCC--cEEEEeCCCCeeeEeeeC-CCccEEEEEEcCCCCEE-EEEEC---CCcEEEEeCCCCCce
Q 006220          559 GRYMASG-DEDG--TIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLL-ASGSA---DCTVKLWDVTTSTKV  624 (656)
Q Consensus       559 g~~L~s~-~~dg--~I~iwD~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l-~sgs~---Dg~I~iWd~~~~~~~  624 (656)
                      +.+|+.. ..++  .|+++|+..+.....+.. -.+.|..+...+++..+ ++.++   -+++..||+.+++..
T Consensus       336 ~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  336 KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            5555544 3443  588999984555544443 33556676666655533 33332   367888999887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.01  E-value=0.0011  Score=71.70  Aligned_cols=226  Identities=15%  Similarity=0.127  Sum_probs=123.0

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      +....-....+.++|+|++++++ .+|.-.|+....                            .+..     ..+.-..
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~----------------------------~r~k-----~~G~g~~   73 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA----------------------------WRNK-----AFGSGLS   73 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT----------------------------TEEE-----EEEE-SE
T ss_pred             CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC----------------------------Cccc-----ccCceeE
Confidence            33444457899999999999995 677777777321                            0110     1244556


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCC
Q 006220          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS  506 (656)
Q Consensus       427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~  506 (656)
                      ..|.+.++ +++-...++|.++.--.......++.. ..+..+-.   |..|...+.+ .|.+||+.+++.++.+...  
T Consensus        74 ~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--  145 (443)
T PF04053_consen   74 FVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--  145 (443)
T ss_dssp             EEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---
T ss_pred             EEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--
Confidence            88998554 666666888999643223332333321 22333332   7777777654 8999999999999998743  


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-----------eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSG-----------ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-----------~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD  575 (656)
                      +|..|.|++++++++..+.+ .+.+++....           .....+..-...|.+.+|..+  .++-.+.. +|+-  
T Consensus       146 ~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--  219 (443)
T PF04053_consen  146 AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--  219 (443)
T ss_dssp             E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--
T ss_pred             CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--
Confidence            48999999999999998755 7777775433           023333332567888899865  33333333 6665  


Q ss_pred             CCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       576 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      +-.|... .+..-..+++=+...+..+.+.....|+.|..+.+...
T Consensus       220 l~~Ge~~-~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  220 LVNGETG-IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             EETTEEE-EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             EEcCCcc-eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence            3344322 22222456777778887788999999999999887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.98  E-value=0.0027  Score=61.53  Aligned_cols=98  Identities=14%  Similarity=-0.006  Sum_probs=61.0

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE-EEEEccCCCEEEEEe
Q 006220          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY-SASFSPLGDFILSSS  440 (656)
Q Consensus       362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~-~l~~spd~~~L~s~s  440 (656)
                      -|++++.|+..|.+++.+..++.+                            +..+..- +.|. .....+++..+..|+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~----------------------------~w~f~~~-~~vk~~a~~d~~~glIycgs  112 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQ----------------------------IWNFVIL-ETVKVRAQCDFDGGLIYCGS  112 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhh----------------------------eeeeeeh-hhhccceEEcCCCceEEEec
Confidence            477899999999999998876321                            1111111 1111 223456789999999


Q ss_pred             CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220          441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                      .|++.+..|..+..++...+....-..+-+..|-...+..+...|.+.
T Consensus       113 hd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl  160 (354)
T KOG4649|consen  113 HDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL  160 (354)
T ss_pred             CCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence            999999999999988887665443333444555223333344444443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.95  E-value=0.00051  Score=74.86  Aligned_cols=265  Identities=15%  Similarity=0.104  Sum_probs=142.0

Q ss_pred             HhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220          327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (656)
Q Consensus       327 ~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (656)
                      .....+++++........++.-+.++.+..+..|++..++|+|+..|.|.|+.++.......                  
T Consensus        52 sS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~------------------  113 (726)
T KOG3621|consen   52 SSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL------------------  113 (726)
T ss_pred             cccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc------------------
Confidence            34456666665554444444445666677888999999999999999999998875211100                  


Q ss_pred             CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc----eeEEeeCCCccEEEEEEecCCCEEEEEE
Q 006220          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSS  482 (656)
Q Consensus       407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~~~~l~sgs  482 (656)
                          ......-..|...|+|++|++++..+++|...|+|.+-.+++..    ..+.+-...++|..+.+. ++ ++++++
T Consensus       114 ----~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~-~LLVSt  187 (726)
T KOG3621|consen  114 ----DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QS-YLLVST  187 (726)
T ss_pred             ----eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cc-eehHhh
Confidence                00001112388999999999999999999999999999888621    112223345677777765 33 333333


Q ss_pred             CCCcEEEEECCCCceeEEec-CCCC--CeeEEEEcC----CCCEEEEEECCCcEEEEeCC-CCeeEEEEe----------
Q 006220          483 HDRTARIWSMDRIQPLRIMA-GHLS--DVDCVRWHI----NCNYIATGSSDKTVRLWDVS-SGECVRIFI----------  544 (656)
Q Consensus       483 ~Dg~i~lwd~~~~~~~~~~~-~~~~--~V~~v~~~p----~~~~l~tgs~dg~V~iwd~~-~~~~~~~~~----------  544 (656)
                      .- ...+++++......+=. ...+  +.-++-|.-    +...|+++-  -..|+|... .|..+++..          
T Consensus       188 l~-r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR--PG~RlWead~~G~V~~Thqfk~ala~~p~  264 (726)
T KOG3621|consen  188 LT-RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR--PGLRLWEADFAGEVIKTHQFKDALARPPA  264 (726)
T ss_pred             hh-hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEec--CCCceEEeecceeEEEeeehhhhhccCCC
Confidence            22 23455555432111111 1112  222333322    233455442  235777665 344444332          


Q ss_pred             ---cCCC-----------CeEEEEEcC----CCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEE
Q 006220          545 ---GHRS-----------MILSLAMSP----DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS  606 (656)
Q Consensus       545 ---~h~~-----------~i~~l~~sp----~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s  606 (656)
                         .+.+           .-..+.|..    ++..+.+-+.-| |+|+|.++.+.+.-. .-...|..++.  .++-|+.
T Consensus       265 p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l~s-e~~~DI~dVs~--~~neiFv  340 (726)
T KOG3621|consen  265 PEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYLWS-EGGHDILDVSH--CGNEIFV  340 (726)
T ss_pred             CcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEEee-cCCCceeEEee--cCceEEE
Confidence               0111           000111110    122233333333 888887665544322 12233444443  4555666


Q ss_pred             EECCCcEEEEeCCCCC
Q 006220          607 GSADCTVKLWDVTTST  622 (656)
Q Consensus       607 gs~Dg~I~iWd~~~~~  622 (656)
                      -..||.+++..+.+..
T Consensus       341 L~~d~~l~~~sv~s~q  356 (726)
T KOG3621|consen  341 LNLDRGLKVESVASRQ  356 (726)
T ss_pred             EecCCceeEEEeehhH
Confidence            6667777777776544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.93  E-value=0.00049  Score=74.24  Aligned_cols=191  Identities=19%  Similarity=0.198  Sum_probs=119.3

Q ss_pred             EeecCccCEEEEEEccCCCEEEEEe---CC-CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCc--EE
Q 006220          416 LYQGHSGPVYSASFSPLGDFILSSS---AD-TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRT--AR  488 (656)
Q Consensus       416 ~l~~h~~~V~~l~~spd~~~L~s~s---~D-g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~--i~  488 (656)
                      .+..-...+..-.|+|++..++..+   .. ..+.++++.++....... ..+.-..-+|+|+|+.++.++ .||.  |+
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy  265 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIY  265 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence            3344456677788999998655332   22 469999999887654443 222333578999999877665 5564  56


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~  565 (656)
                      ++|+......+ +....+.-+.=.|+|+|++|+..+. .|  .|.++|...+...+ ++...+.-..-.|||||++|+..
T Consensus       266 ~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~SpdG~~i~~~  343 (425)
T COG0823         266 LMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSPDGDKIVFE  343 (425)
T ss_pred             EEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccCCCCCCEEEEE
Confidence            66777666433 3323233335678999999887654 34  46777776665533 33333333478899999999887


Q ss_pred             EC-CCc--EEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC
Q 006220          566 DE-DGT--IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD  610 (656)
Q Consensus       566 ~~-dg~--I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D  610 (656)
                      +. +|.  |.+.|+.++..+..+ .+......-+|.+++..++..+..
T Consensus       344 ~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         344 SSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             eccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEeccC
Confidence            64 344  777777666543322 233334455677888776665543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.92  E-value=0.0042  Score=61.86  Aligned_cols=198  Identities=15%  Similarity=0.163  Sum_probs=116.2

Q ss_pred             EeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCC-CccEEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220          416 LYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (656)
Q Consensus       416 ~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~  493 (656)
                      .+.+-...+.+++|+|+.. ++++....+.|...+.+ ++.+..+.-. ....-+|++..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            3445556799999999866 55666677888888875 6777766543 3457789998777766666568999999884


Q ss_pred             CCc------eeEEec-----CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC---CeeEEEE--e------cCCCCeE
Q 006220          494 RIQ------PLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS---GECVRIF--I------GHRSMIL  551 (656)
Q Consensus       494 ~~~------~~~~~~-----~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~---~~~~~~~--~------~h~~~i~  551 (656)
                      ...      ....+.     .+...+..++|.|.++.|+++-...-..+|.++.   ...+...  .      .....+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321      111121     2445689999999988888887777777776653   2222111  1      1234578


Q ss_pred             EEEEcCC-CCEEEEEECCCcEEEEeCCCCeeeEeeeCCC---------ccEEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          552 SLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLW  616 (656)
Q Consensus       552 ~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~---------~~V~~l~~s~~~~~l~sgs~Dg~I~iW  616 (656)
                      +++++|. |.+++.+..+..|..+| ..|+.+..+.-..         ...-.++|.++|++.+++ .-+..+++
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            8999995 56677777888999999 6788776654222         246789999999765544 55555444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.89  E-value=0.0089  Score=59.53  Aligned_cols=198  Identities=12%  Similarity=0.163  Sum_probs=109.6

Q ss_pred             EeeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          347 FINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      +.+-...+..++|+|+.+ ++|+....+.|...+++. .                          ......+.+ .+-.-
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~--------------------------vlr~i~l~g-~~D~E   68 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-K--------------------------VLRRIPLDG-FGDYE   68 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----------------------------EEEEEE-SS--SSEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-C--------------------------EEEEEeCCC-CCCce
Confidence            334456699999999855 666666677777776542 0                          011112222 34567


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCce------eEEee-----CCCccEEEEEEecCCCEEEEEECCCcEEEEECCC
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNAN------LVCYK-----GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~------~~~~~-----~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~  494 (656)
                      +|++..++.++++.-.++.+.++++.....      ...+.     .++..+-.++|+|.++.|+++-...-..+|.+..
T Consensus        69 gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   69 GITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             EEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             eEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence            888887787777766789999998843221      11121     2456689999999888888887766666666543


Q ss_pred             ---CceeEEe--------cCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEEecCC---------CCeEEE
Q 006220          495 ---IQPLRIM--------AGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHR---------SMILSL  553 (656)
Q Consensus       495 ---~~~~~~~--------~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~---------~~i~~l  553 (656)
                         ...+...        ......+.+++++|.. ++++.+..++.|..+| .+|+.+..+.-..         ...-.|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGI  227 (248)
T PF06977_consen  149 FPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGI  227 (248)
T ss_dssp             TT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEE
T ss_pred             ccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEE
Confidence               1111111        1244568899999965 4555666778899999 6788776654322         246789


Q ss_pred             EEcCCCCEEEEEECCCcEEEE
Q 006220          554 AMSPDGRYMASGDEDGTIMMW  574 (656)
Q Consensus       554 ~~sp~g~~L~s~~~dg~I~iw  574 (656)
                      +|.++|++.+++ +-+..++|
T Consensus       228 a~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  228 AFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             EE-TT--EEEEE-TTTEEEEE
T ss_pred             EECCCCCEEEEc-CCceEEEe
Confidence            999998655544 55544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.89  E-value=0.018  Score=59.14  Aligned_cols=250  Identities=14%  Similarity=0.099  Sum_probs=145.1

Q ss_pred             EEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          355 NCASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       355 ~~l~fs~dg~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      -.+..|||++.+.+.+          ..-.|.+||..+.........               +.....    ...  ...
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i---------------P~k~R~----~~~--~~~   97 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI---------------PPKPRA----QVV--PYK   97 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE---------------TTS-B------BS----G
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec---------------CCcchh----eec--ccc
Confidence            3466899999888643          234599999886432221110               100000    000  112


Q ss_pred             EEEEEccCCCEEEEEe--CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC-CCceeEEe
Q 006220          425 YSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIM  501 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~-~~~~~~~~  501 (656)
                      ..+.++.|+++++..-  --.+|.|.|+..++.+..+...  .++.+--++ ..-|.+-|.||++.-..++ .++..+..
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecC-CCceEEEecCCceEEEEECCCCCEeEee
Confidence            2357888898877653  3467999999988877766532  233332222 3468888999999999987 45544322


Q ss_pred             c----CCCCC-eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeE--EEEecC----------CCCeEEEEEcCCCCEEEE
Q 006220          502 A----GHLSD-VDCVRWHINCNYIATGSSDKTVRLWDVSSGECV--RIFIGH----------RSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       502 ~----~~~~~-V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~--~~~~~h----------~~~i~~l~~sp~g~~L~s  564 (656)
                      .    ....+ +..-++...+..++--+.+|.|+--|+......  ..+.--          .+.-.-+++++..+.|++
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence            1    11111 223334445555666778999999888765432  122100          122344778875554444


Q ss_pred             EE---CCC-------cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCCceeeccc
Q 006220          565 GD---EDG-------TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       565 ~~---~dg-------~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs-~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      .-   .+|       .|.++|+.+++.+.++.. ..++.+|..+.+.+ +|++.+ .++.+.|||..+++.+.....
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            22   122       488899999999999874 23577999998765 665544 579999999999988766544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=97.87  E-value=1.9e-05  Score=49.21  Aligned_cols=27  Identities=22%  Similarity=0.477  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHH
Q 006220            4 LQVVEFVATYLKKKGFSEAENALQAEI   30 (656)
Q Consensus         4 ~~~~~~v~~yl~~~~~~~~e~~~~~e~   30 (656)
                      ++||++|.+||.++||..|.++|++|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            589999999999999999999999995

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.84  E-value=0.00017  Score=78.42  Aligned_cols=137  Identities=13%  Similarity=0.176  Sum_probs=102.2

Q ss_pred             CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee-CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                      |...|.--+++..+++++.|+.-|.+++|+-.++.....-. +..+.+..+..|++..++|.|+..|.|.++-+....+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            45566667777789999999999999999988766543322 34556677788999999999999999999987664432


Q ss_pred             EE--e----cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC----eeEEEEecCCCCeEEEEEc
Q 006220          499 RI--M----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG----ECVRIFIGHRSMILSLAMS  556 (656)
Q Consensus       499 ~~--~----~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~----~~~~~~~~h~~~i~~l~~s  556 (656)
                      ..  +    ..|...|+|++|++|+..+++|...|+|.+-.+.+.    -....+....+.|..+...
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            21  1    146788999999999999999999999999887762    1122233445677777765

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.83  E-value=0.0021  Score=69.37  Aligned_cols=190  Identities=18%  Similarity=0.165  Sum_probs=115.7

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEe---CC-CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGF---SD-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~---~d-g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~  421 (656)
                      .+......+..-+|+|++..++.-.   .. ..+.++++.....                          .....+.+  
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~--------------------------~~i~~~~g--  238 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR--------------------------PVILNFNG--  238 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc--------------------------ceeeccCC--
Confidence            4445556688889999988876542   22 3588888775321                          11122223  


Q ss_pred             cCEEEEEEccCCCEEE-EEeCCCe--EEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CC--cEEEEECCCC
Q 006220          422 GPVYSASFSPLGDFIL-SSSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRI  495 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~-s~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg--~i~lwd~~~~  495 (656)
                       .-..-+|+|||+.|+ +...||.  |.+.|+.++.. ..+..-.+.-+.=.|+|+|++++..+. .|  .|.+++.+..
T Consensus       239 -~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         239 -NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             -ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence             333568999999766 5555665  55556665553 333332333336689999999877763 34  4666677766


Q ss_pred             ceeEEecCCCCCeeEEEEcCCCCEEEEEECC-Cc--EEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSD-KT--VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g~--V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      ...+..... ..-.+-.|+|+|.+|+..+.. |.  |.+.|+.++...+.+. +......-.|.|+|+.+...+.
T Consensus       317 ~~~riT~~~-~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         317 QVTRLTFSG-GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             ceeEeeccC-CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence            554433322 222277899999999887643 44  6777777666555443 3334445678888887776543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.78  E-value=0.0055  Score=65.54  Aligned_cols=204  Identities=13%  Similarity=0.148  Sum_probs=123.2

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCce-------------------------------------------eEEe
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------------------------------------------LVCY  459 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~-------------------------------------------~~~~  459 (656)
                      .|+.++|+++..-|++|...|.|.||.....+.                                           ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            588999999989999999999999986532111                                           0112


Q ss_pred             eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--C------CCCCeeEEEEcC-----CC---CEEEEE
Q 006220          460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--G------HLSDVDCVRWHI-----NC---NYIATG  523 (656)
Q Consensus       460 ~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~------~~~~V~~v~~~p-----~~---~~l~tg  523 (656)
                      ....++|++++.| +=.+++.|..+|++.|.|++....+..-.  .      ....|+++.|..     ++   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            2345789999998 44589999999999999998877665422  2      234578888862     22   578899


Q ss_pred             ECCCcEEEEeCCC---Cee----EEEEecCCCCeEEEE-EcCC---------------------CCEEEEEECCCcEEEE
Q 006220          524 SSDKTVRLWDVSS---GEC----VRIFIGHRSMILSLA-MSPD---------------------GRYMASGDEDGTIMMW  574 (656)
Q Consensus       524 s~dg~V~iwd~~~---~~~----~~~~~~h~~~i~~l~-~sp~---------------------g~~L~s~~~dg~I~iw  574 (656)
                      +..|.+.+|.+.-   +..    ......+.++|..|. |+.+                     ..+++++ .+..++++
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~  240 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVF  240 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEE
Confidence            9999999998751   211    122224566666655 3221                     1134444 46789999


Q ss_pred             eCCCCeeeEeeeCCCccEEEEEEc-----CCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          575 DLASGRCVTPLMGHTSCVWTLAYS-----CEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       575 D~~~~~~~~~~~~h~~~V~~l~~s-----~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      ...+.+..+......-....+.+-     ..+..|++-..+|.|+++.+..-+.+....
T Consensus       241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~  299 (395)
T PF08596_consen  241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS  299 (395)
T ss_dssp             -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred             eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence            999888777665333334445552     356788999999999999999877665543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.78  E-value=0.018  Score=58.73  Aligned_cols=225  Identities=15%  Similarity=0.133  Sum_probs=131.9

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe
Q 006220          361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS  440 (656)
Q Consensus       361 ~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s  440 (656)
                      ..++.|+.|+.+| |.++++....                           ....  ..+..+|..+...++-+.|++-+
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~---------------------------~~~~--i~~~~~I~ql~vl~~~~~llvLs   54 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPS---------------------------KPTR--ILKLSSITQLSVLPELNLLLVLS   54 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCc---------------------------ccee--EeecceEEEEEEecccCEEEEEc
Confidence            4588999999998 8888872200                           0011  11223399999998877776665


Q ss_pred             CCCeEEEEeccCCceeEEe--------------eCCCccEEEEE--EecCCCEEEEEECCCcEEEEECCCC-----ceeE
Q 006220          441 ADTTIRLWSTKLNANLVCY--------------KGHNYPVWDVQ--FNPQGHYFASSSHDRTARIWSMDRI-----QPLR  499 (656)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~--------------~~h~~~V~~l~--~sp~~~~l~sgs~Dg~i~lwd~~~~-----~~~~  499 (656)
                       |+++.++++.........              ......+...+  -...+...+++...++|.+|.....     +..+
T Consensus        55 -d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~k  133 (275)
T PF00780_consen   55 -DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLK  133 (275)
T ss_pred             -CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeE
Confidence             499999998754443311              11222344444  1224444445555568888877542     3445


Q ss_pred             EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC------------CCeEEEEEcCCCCEEEEEEC
Q 006220          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------------SMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~------------~~i~~l~~sp~g~~L~s~~~  567 (656)
                      .+. -...+.+++|.  ++.++.|..+ ...+.|+.++.....+....            .++..+.. +++.+|++.  
T Consensus       134 e~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--  206 (275)
T PF00780_consen  134 EIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--  206 (275)
T ss_pred             EEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--
Confidence            554 33778899998  5678887754 57889999877655442111            23333333 345666653  


Q ss_pred             CCcEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          568 DGTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       568 dg~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      |..-.+.|. .|+...  .+.- ...+.++++.  ..+|+..+. +.|.||++.+++.++...
T Consensus       207 ~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  207 DNIGVFVNK-NGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             cceEEEEcC-CCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence            333333443 454333  2222 2345566663  457777665 559999999997766554

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.76  E-value=0.011  Score=60.97  Aligned_cols=184  Identities=13%  Similarity=0.179  Sum_probs=116.2

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee----C-CCccEEEEEEecCCCEEEEEEC---------CCcE
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK----G-HNYPVWDVQFNPQGHYFASSSH---------DRTA  487 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~----~-h~~~V~~l~~sp~~~~l~sgs~---------Dg~i  487 (656)
                      +.+.++..-..+..|+++..  .+.+++.+++..+..+.    + .....+++...|+|.+.++...         -..-
T Consensus        66 ~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G  143 (307)
T COG3386          66 GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG  143 (307)
T ss_pred             CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence            33445544444555665543  37777776555522221    1 1234567888999887665544         1122


Q ss_pred             EEEECC-CCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCC--C----ee-EEEEecCCCCeEEEEEcCC
Q 006220          488 RIWSMD-RIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSS--G----EC-VRIFIGHRSMILSLAMSPD  558 (656)
Q Consensus       488 ~lwd~~-~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~--~----~~-~~~~~~h~~~i~~l~~sp~  558 (656)
                      .+|-++ .+..++.+..+...-+.++|||+++.++.+.. .+.|.-|++..  +    .. ...+....+..-.++...+
T Consensus       144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad  223 (307)
T COG3386         144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD  223 (307)
T ss_pred             eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC
Confidence            455555 56677777777777889999999988877655 47788887652  1    11 1122233455667778888


Q ss_pred             CCEEEEEECCC-cEEEEeCCCCeeeEeeeCCCccEEEEEEc-CCCCEEEEEE
Q 006220          559 GRYMASGDEDG-TIMMWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGS  608 (656)
Q Consensus       559 g~~L~s~~~dg-~I~iwD~~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~sgs  608 (656)
                      |.+-+++..+| .|.+|+.. |+.+..+..+...+++++|- ++.+.|...+
T Consensus       224 G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         224 GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            88775555554 89999987 99999988876778888884 4445554444

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.74  E-value=0.014  Score=64.78  Aligned_cols=182  Identities=16%  Similarity=0.194  Sum_probs=114.7

Q ss_pred             CCCeEEEEeccCCceeEEeeCCCc--------------------cEE-EEEEecCCCEEEEEECCC--------------
Q 006220          441 ADTTIRLWSTKLNANLVCYKGHNY--------------------PVW-DVQFNPQGHYFASSSHDR--------------  485 (656)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~~--------------------~V~-~l~~sp~~~~l~sgs~Dg--------------  485 (656)
                      .+|.+..+|..+++.+-.+.....                    .++ ...+.+.+..++.++.++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            467888999998888776653211                    111 234444566777777665              


Q ss_pred             ----cEEEEECCCCceeEEecCCCCCee------EEEEc----CCCC---EEEEEECCCcEEEEeCCCCeeEEEEecCCC
Q 006220          486 ----TARIWSMDRIQPLRIMAGHLSDVD------CVRWH----INCN---YIATGSSDKTVRLWDVSSGECVRIFIGHRS  548 (656)
Q Consensus       486 ----~i~lwd~~~~~~~~~~~~~~~~V~------~v~~~----p~~~---~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~  548 (656)
                          .+..+|..+++..-.+........      ...+.    -++.   .+++++.+|.+...|.++|+.+......  
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--  330 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--  330 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence                799999999988877642111110      00111    1333   6788889999999999999988765421  


Q ss_pred             CeEEEEEcCCCCEEEEE------------------ECCCcEEEEeCCCCeeeEeeeCCC--------ccEE--EEEEcCC
Q 006220          549 MILSLAMSPDGRYMASG------------------DEDGTIMMWDLASGRCVTPLMGHT--------SCVW--TLAYSCE  600 (656)
Q Consensus       549 ~i~~l~~sp~g~~L~s~------------------~~dg~I~iwD~~~~~~~~~~~~h~--------~~V~--~l~~s~~  600 (656)
                       ...++.+|  ..++.+                  ..+|.+.-.|+.+|+.+-+.....        .+..  .+.  ..
T Consensus       331 -~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~  405 (488)
T cd00216         331 -EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TA  405 (488)
T ss_pred             -ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ec
Confidence             11233444  223222                  235788888998888776654321        1111  122  24


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220          601 GSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       601 ~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      +..|+.++.||.|+.+|..+++.+.+.+.
T Consensus       406 g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         406 GNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            57888899999999999999998877654

The alignment model contains an 8-bladed beta-propeller.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=0.019  Score=61.59  Aligned_cols=217  Identities=16%  Similarity=0.143  Sum_probs=148.1

Q ss_pred             eEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220          354 LNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (656)
Q Consensus       354 V~~l~fs~dg~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  432 (656)
                      -.+++.++++.. .+....+..|.+.|......                           ......+.  ....++++|+
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~---------------------------~~~~~vG~--~P~~~~~~~~  126 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV---------------------------LGSIPVGL--GPVGLAVDPD  126 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccce---------------------------eeEeeecc--CCceEEECCC
Confidence            456788888874 44444568899998543111                           11111122  4567899999


Q ss_pred             CCEEEEEeC---CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCceeE-E---ecCC
Q 006220          433 GDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLR-I---MAGH  504 (656)
Q Consensus       433 ~~~L~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~~~~-~---~~~~  504 (656)
                      +..+..+..   ++++.+.|..+.........-..| ..++++|+|..++++. .++.+.+.|.......+ .   ...-
T Consensus       127 ~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~  205 (381)
T COG3391         127 GKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV  205 (381)
T ss_pred             CCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc
Confidence            987766555   689999999988887775544455 8999999999776665 78999999977665543 0   0112


Q ss_pred             CCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCCC
Q 006220          505 LSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLASG  579 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~d---g~V~iwd~~~~~~~~~-~~~h~~~i~~l~~sp~g~~L~s~~~-dg~I~iwD~~~~  579 (656)
                      ......+.+.|+|+++++....   +.+...|..++..... ...-......+.++|+|.++.+... .+.+.+-|..+.
T Consensus       206 ~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         206 GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            2334678899999977665443   5899999998877765 2211114566899999999888744 488999999888


Q ss_pred             eeeEeeeCCC---ccEEEEEEcCC
Q 006220          580 RCVTPLMGHT---SCVWTLAYSCE  600 (656)
Q Consensus       580 ~~~~~~~~h~---~~V~~l~~s~~  600 (656)
                      ..........   ..+..+++.+.
T Consensus       286 ~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         286 RVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             ceeeeecccccccccceeccceee
Confidence            7777655333   34566666553

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.69  E-value=0.016  Score=61.54  Aligned_cols=187  Identities=18%  Similarity=0.237  Sum_probs=103.9

Q ss_pred             ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEE-eeCC----------------CccEEEEEEecCCCEEEEEEC
Q 006220          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-YKGH----------------NYPVWDVQFNPQGHYFASSSH  483 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~-~~~h----------------~~~V~~l~~sp~~~~l~sgs~  483 (656)
                      ...+....|||+|+.++... ++.|.+++..++..... ..+.                -..-..+.|||++++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            56788899999999998876 46899999876643321 1120                011246889999999988653


Q ss_pred             C-Cc-----------------------------------EEEEECCCCceeEEe-----cCCCCCeeEEEEcCCCCEEEE
Q 006220          484 D-RT-----------------------------------ARIWSMDRIQPLRIM-----AGHLSDVDCVRWHINCNYIAT  522 (656)
Q Consensus       484 D-g~-----------------------------------i~lwd~~~~~~~~~~-----~~~~~~V~~v~~~p~~~~l~t  522 (656)
                      | ..                                   +.++|+.+++....-     .....-+..+.|.+++..|+.
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            2 22                                   223344333322111     112334678889998884444


Q ss_pred             E--ECC---CcEEEEeCCCCeeEEEEec-CCCCe---EEEEEc-CCCC-EEEEEECCCc--EEEEeCCCCeeeEeeeCCC
Q 006220          523 G--SSD---KTVRLWDVSSGECVRIFIG-HRSMI---LSLAMS-PDGR-YMASGDEDGT--IMMWDLASGRCVTPLMGHT  589 (656)
Q Consensus       523 g--s~d---g~V~iwd~~~~~~~~~~~~-h~~~i---~~l~~s-p~g~-~L~s~~~dg~--I~iwD~~~~~~~~~~~~h~  589 (656)
                      .  +.+   ..+.++|..++.+...... ..+.|   ....|. +++. +|.....+|.  |.+++...+. ...+....
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~  279 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGD  279 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SS
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCc
Confidence            3  333   2467778877765443332 22322   245554 5554 5556667775  5555655554 44555555


Q ss_pred             ccEEE-EEEcCCCCEEE-EEEC
Q 006220          590 SCVWT-LAYSCEGSLLA-SGSA  609 (656)
Q Consensus       590 ~~V~~-l~~s~~~~~l~-sgs~  609 (656)
                      -.|.. +.|+++++.|. ++..
T Consensus       280 ~~V~~i~~~d~~~~~iyf~a~~  301 (353)
T PF00930_consen  280 WEVTSILGWDEDNNRIYFTANG  301 (353)
T ss_dssp             S-EEEEEEEECTSSEEEEEESS
T ss_pred             eeecccceEcCCCCEEEEEecC
Confidence            56654 67788766554 4544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.65  E-value=0.018  Score=61.11  Aligned_cols=244  Identities=17%  Similarity=0.173  Sum_probs=125.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC-ccCEEEEEE
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH-SGPVYSASF  429 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~~  429 (656)
                      ...+....|||+|+.+|.. .++.|.++++............  ...      +.  ++  ..--....- -+.-..+-|
T Consensus        42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg--~~~------i~--nG--~~dwvyeEEv~~~~~~~~W  108 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDG--EPG------IY--NG--VPDWVYEEEVFDRRSAVWW  108 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES----TTT------EE--ES--B--HHHHHHTSSSSBSEEE
T ss_pred             ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEecccc--cee------EE--cC--ccceeccccccccccceEE
Confidence            4568899999999999988 5688999987654222111100  000      00  00  000000000 011134667


Q ss_pred             ccCCCEEEEEeCC----------------------------------C--eEEEEeccCCceeE-Ee----eCCCccEEE
Q 006220          430 SPLGDFILSSSAD----------------------------------T--TIRLWSTKLNANLV-CY----KGHNYPVWD  468 (656)
Q Consensus       430 spd~~~L~s~s~D----------------------------------g--~I~lwd~~~~~~~~-~~----~~h~~~V~~  468 (656)
                      |||+++|+....|                                  .  .+.++|+.+++... ..    ..-..-+..
T Consensus       109 Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~  188 (353)
T PF00930_consen  109 SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTR  188 (353)
T ss_dssp             -TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEE
T ss_pred             CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCccc
Confidence            7777766654432                                  1  23345555544321 11    123445788


Q ss_pred             EEEecCCCEEEEEE--CC---CcEEEEECCCCceeEEec----CCCCCeeEEEEc-CCCC-EEEEEECCCc--EEEEeCC
Q 006220          469 VQFNPQGHYFASSS--HD---RTARIWSMDRIQPLRIMA----GHLSDVDCVRWH-INCN-YIATGSSDKT--VRLWDVS  535 (656)
Q Consensus       469 l~~sp~~~~l~sgs--~D---g~i~lwd~~~~~~~~~~~----~~~~~V~~v~~~-p~~~-~l~tgs~dg~--V~iwd~~  535 (656)
                      +.|.+++..|+..-  .+   ..+.++|..++.......    +-...-....|. +++. ++.....+|.  |.+++..
T Consensus       189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~  268 (353)
T PF00930_consen  189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD  268 (353)
T ss_dssp             EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred             ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence            99999988444443  22   246667776655443332    111223355554 5554 5555556775  5555655


Q ss_pred             CCeeEEEEecCCCCeEE-EEEcCCCCEEE-EEECC----CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEE
Q 006220          536 SGECVRIFIGHRSMILS-LAMSPDGRYMA-SGDED----GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS  608 (656)
Q Consensus       536 ~~~~~~~~~~h~~~i~~-l~~sp~g~~L~-s~~~d----g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs  608 (656)
                      .+. .+.++...-.|+. +.++++++.|+ ++..+    ..|..-++..+..+..+....+....+.|||++++++-.+
T Consensus       269 ~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  269 GGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             SSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             ccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            555 3445544556644 67888877554 44432    2565566662344455554333337899999999877554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.64  E-value=0.0015  Score=74.64  Aligned_cols=135  Identities=14%  Similarity=0.157  Sum_probs=95.8

Q ss_pred             eCCCeEEEEeccCCceeEEeeCCCcc-EEEEEEec-----CCCEEEEEECCCcEEEEECCCCc--eeEEe---cCCCCCe
Q 006220          440 SADTTIRLWSTKLNANLVCYKGHNYP-VWDVQFNP-----QGHYFASSSHDRTARIWSMDRIQ--PLRIM---AGHLSDV  508 (656)
Q Consensus       440 s~Dg~I~lwd~~~~~~~~~~~~h~~~-V~~l~~sp-----~~~~l~sgs~Dg~i~lwd~~~~~--~~~~~---~~~~~~V  508 (656)
                      .....|+-.|+.+|+.+..++.|... |.+++-..     ....-++|-.+..+..||.+-..  .+..-   -......
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            34577999999999999999887643 55543321     13345667778899999988532  22110   0234557


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      .|++-..+| +||+|+.+|.||+||--..+....+.+-..+|..|..+.||+||++.+ +..+.+++.
T Consensus       581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            788776665 899999999999999433333344567778999999999999988776 457778775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.62  E-value=0.0039  Score=67.63  Aligned_cols=181  Identities=14%  Similarity=0.132  Sum_probs=99.9

Q ss_pred             eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (656)
Q Consensus       417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~  496 (656)
                      +....-....++++|+|++++.+ .||.-.|+.........     .+.....+|.+ .+.+|+-...++|.++.--...
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred             CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcCccc
Confidence            33344557899999999998885 46778888754443322     23445688998 4557777778999996322222


Q ss_pred             eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      ....+... ..+..+-.   |..|+..+.+ .|.+||..+++.++.+...  +|..+.|+++|.+++..+.+ .+.|++.
T Consensus       101 ~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  101 VVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             cceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence            22233321 23444432   7777776544 8999999999999988643  48999999999999999865 6888876


Q ss_pred             CCC-----------eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEE
Q 006220          577 ASG-----------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL  615 (656)
Q Consensus       577 ~~~-----------~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i  615 (656)
                      ...           ..+..+..-...|.+.+|..+  .++-.+.. .|+.
T Consensus       173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY  219 (443)
T PF04053_consen  173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY  219 (443)
T ss_dssp             -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred             cchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence            433           022333222457888888765  44333333 5555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.03  Score=60.09  Aligned_cols=200  Identities=17%  Similarity=0.174  Sum_probs=142.0

Q ss_pred             EEEEEEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC---CCcEEEEECCCCceeE
Q 006220          424 VYSASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRIQPLR  499 (656)
Q Consensus       424 V~~l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~---Dg~i~lwd~~~~~~~~  499 (656)
                      -.+++.++.+..+ +....++.|.+.|..+.........-. ....++++|++..+.++..   ++++.+.|..+.+...
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            3567888888744 455556899999988777666554333 4568999999988777765   6889999988888877


Q ss_pred             EecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEE-----EEecCCCCeEEEEEcCCCCEEEEEECC---Cc
Q 006220          500 IMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVR-----IFIGHRSMILSLAMSPDGRYMASGDED---GT  570 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~-----~~~~h~~~i~~l~~sp~g~~L~s~~~d---g~  570 (656)
                      .......+ ..+++.|+|+.+++.. .++.|.+.|..+....+     ..... ..-..+.++|+|..+.+....   +.
T Consensus       155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCce
Confidence            75543344 8899999999776665 78899999977665553     11112 233568899999966665433   58


Q ss_pred             EEEEeCCCCeeeEeeeCCCc-cEEEEEEcCCCCEEEEEECC-CcEEEEeCCCCCceee
Q 006220          571 IMMWDLASGRCVTPLMGHTS-CVWTLAYSCEGSLLASGSAD-CTVKLWDVTTSTKVLK  626 (656)
Q Consensus       571 I~iwD~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l~sgs~D-g~I~iWd~~~~~~~~~  626 (656)
                      +...|..++.....-..-.. ....+..+|+|..+.+.... +.+.+-|..+......
T Consensus       233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            99999988877665221111 45678899999988887544 8899999887665443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00092  Score=68.29  Aligned_cols=130  Identities=11%  Similarity=0.190  Sum_probs=95.3

Q ss_pred             EEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCC-CCEEEE
Q 006220          445 IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN-CNYIAT  522 (656)
Q Consensus       445 I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~-~~~l~t  522 (656)
                      |++.+..+.+....+.+|...|.+++|||..+ .+..++.+.+|++.|+++...+..+..+ ..+.+++|.-+ .++|++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            77777666666667778889999999999776 7888999999999999999888888877 88999999964 568889


Q ss_pred             EECCCcEEEEeCCCCee-EEEEec--CCCCeEEEE------EcCCCCEEEEEECCCcEEEEeCC
Q 006220          523 GSSDKTVRLWDVSSGEC-VRIFIG--HRSMILSLA------MSPDGRYMASGDEDGTIMMWDLA  577 (656)
Q Consensus       523 gs~dg~V~iwd~~~~~~-~~~~~~--h~~~i~~l~------~sp~g~~L~s~~~dg~I~iwD~~  577 (656)
                      |...|.|.+||++..+- +..+.+  ...+|..++      ..+.|.+|+....+  +..|.+.
T Consensus       254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~  315 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIV  315 (463)
T ss_pred             eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhh
Confidence            99999999999986532 222222  123343333      23345566555543  5566653

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.57  E-value=0.022  Score=59.58  Aligned_cols=198  Identities=13%  Similarity=0.160  Sum_probs=113.7

Q ss_pred             CCCCeEEEEE---cC----CCCEEEEEeC---------C-CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCce
Q 006220          350 THNGLNCASI---SQ----DGSLVAGGFS---------D-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR  412 (656)
Q Consensus       350 ~~~~V~~l~f---s~----dg~~La~g~~---------d-g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (656)
                      ....++|++.   ..    ...++++|+.         . |.|.++++...+.                      ....-
T Consensus        22 ~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~----------------------~~~~l   79 (321)
T PF03178_consen   22 PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE----------------------NNFKL   79 (321)
T ss_dssp             TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------------------------EE
T ss_pred             CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc----------------------cceEE
Confidence            3444555543   33    2578888864         2 8899999875200                      00011


Q ss_pred             eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC--CccEEEEEEecCCCEEEEEECCCcEEEE
Q 006220          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQGHYFASSSHDRTARIW  490 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~sgs~Dg~i~lw  490 (656)
                      .........++|++++-- .+ .|+.+. .+.|.+|++.....+.....+  ...+.++..  .++++++|.....+.++
T Consensus        80 ~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   80 KLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLL  154 (321)
T ss_dssp             EEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEE
T ss_pred             EEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEE
Confidence            112223457899999877 34 455444 368999999877723222222  234555554  47799999988888887


Q ss_pred             ECCC-CceeEEec--CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-------C--eeEEEEec-CCCCeEEE---E
Q 006220          491 SMDR-IQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------G--ECVRIFIG-HRSMILSL---A  554 (656)
Q Consensus       491 d~~~-~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-------~--~~~~~~~~-h~~~i~~l---~  554 (656)
                      ..+. ...+..+.  .....++++.|-++++.++++..+|.+.++....       +  .......- ....|+++   .
T Consensus       155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~  234 (321)
T PF03178_consen  155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS  234 (321)
T ss_dssp             EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred             EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence            5543 22233333  2345588888886767999999999999987752       2  22222222 23467777   4


Q ss_pred             EcC--CCC------EEEEEECCCcEEEE
Q 006220          555 MSP--DGR------YMASGDEDGTIMMW  574 (656)
Q Consensus       555 ~sp--~g~------~L~s~~~dg~I~iw  574 (656)
                      +.|  .+.      .++.++.+|.|...
T Consensus       235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  235 LIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             eeecCCCCcccccceEEEEecCCEEEEE
Confidence            445  222      47778888988843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.52  E-value=0.031  Score=58.47  Aligned_cols=179  Identities=15%  Similarity=0.155  Sum_probs=106.4

Q ss_pred             CCEEEEEeC----------CCeEEEEeccCC----ceeEEe--eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220          433 GDFILSSSA----------DTTIRLWSTKLN----ANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (656)
Q Consensus       433 ~~~L~s~s~----------Dg~I~lwd~~~~----~~~~~~--~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~  496 (656)
                      ..+++.|+.          .|.|.++++...    ..+...  ....++|.+++-- ++ +++++. ++.+++|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence            456776654          288999999873    122221  2357788888776 34 444444 4889999998877


Q ss_pred             eeEEecCCCC--CeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeEEEEec--CCCCeEEEEEcCCCCEEEEEECCCcE
Q 006220          497 PLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTI  571 (656)
Q Consensus       497 ~~~~~~~~~~--~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~~~~~~~~--h~~~i~~l~~sp~g~~L~s~~~dg~I  571 (656)
                      .+.....+..  .+.++..  .++++++|.....+.++..+. +..+..+..  ....++++.|-++++.++++..+|.+
T Consensus       119 ~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl  196 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL  196 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred             cchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence            2322222223  4555544  466999999988888875443 332333322  34468889998777899999999999


Q ss_pred             EEEeCCC-------Ce-eeE-eeeC-CCccEEEE---EEcC--CC------CEEEEEECCCcEEEE
Q 006220          572 MMWDLAS-------GR-CVT-PLMG-HTSCVWTL---AYSC--EG------SLLASGSADCTVKLW  616 (656)
Q Consensus       572 ~iwD~~~-------~~-~~~-~~~~-h~~~V~~l---~~s~--~~------~~l~sgs~Dg~I~iW  616 (656)
                      .++....       +. .+. ...- ....|+++   ++.|  .+      ..++.++.+|.|.+.
T Consensus       197 ~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  197 FVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            9998763       22 222 2222 23567777   4444  12      248888899998844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.50  E-value=0.047  Score=53.18  Aligned_cols=142  Identities=8%  Similarity=-0.007  Sum_probs=92.8

Q ss_pred             CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEE
Q 006220          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW  513 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~  513 (656)
                      .+++.||..+.+.--|..+|....... -...|.+-+.- -|++++.|...|.+++.+..++.....+..-..--.....
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~  101 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC  101 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence            467778888888888888777654322 12222222222 3678999999999999999999877766533221122345


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (656)
Q Consensus       514 ~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~  577 (656)
                      .+++..+.+|+.|++.+..|.++..++...+-..+...+-+..|-...|+.+...|.+.--..+
T Consensus       102 d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence            6889999999999999999999999988765444433444555522334444444554443433

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.37  E-value=0.025  Score=62.85  Aligned_cols=193  Identities=12%  Similarity=0.122  Sum_probs=122.9

Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeEEeeCCCc------cEE--EEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNY------PVW--DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~------~V~--~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  504 (656)
                      +..++.++.++.|.-.|..+++.+-.+.....      .+.  .+... ++..++.++.++.++.+|.++++.+-.+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            44567777889999999999888766653322      110  11111 2267888889999999999999988776533


Q ss_pred             CCC-----ee-EEEEcCCCCEEEEEE---------CCCcEEEEeCCCCeeEEEEecCCCC--------------------
Q 006220          505 LSD-----VD-CVRWHINCNYIATGS---------SDKTVRLWDVSSGECVRIFIGHRSM--------------------  549 (656)
Q Consensus       505 ~~~-----V~-~v~~~p~~~~l~tgs---------~dg~V~iwd~~~~~~~~~~~~h~~~--------------------  549 (656)
                      ...     +. ...+.  +..++.++         .++.+.-+|..+|+.+..+......                    
T Consensus       140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            221     11 11121  24455554         3678999999999988776542110                    


Q ss_pred             e-EEEEEcCCCCEEEEEECCC------------------cEEEEeCCCCeeeEeeeCCCccEE------EEEEc----CC
Q 006220          550 I-LSLAMSPDGRYMASGDEDG------------------TIMMWDLASGRCVTPLMGHTSCVW------TLAYS----CE  600 (656)
Q Consensus       550 i-~~l~~sp~g~~L~s~~~dg------------------~I~iwD~~~~~~~~~~~~h~~~V~------~l~~s----~~  600 (656)
                      + ...++.+.+..++.++.++                  .|.-+|..+|+.+-.+..-....+      ...+.    -+
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~  297 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD  297 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence            1 1234455566777776665                  799999999998877642111111      00111    23


Q ss_pred             CC---EEEEEECCCcEEEEeCCCCCceeecc
Q 006220          601 GS---LLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       601 ~~---~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      +.   .++.++.+|.+...|..+++.+....
T Consensus       298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             CCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence            33   67888899999999999999887654

The alignment model contains an 8-bladed beta-propeller.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.34  E-value=0.047  Score=59.12  Aligned_cols=175  Identities=13%  Similarity=0.057  Sum_probs=96.1

Q ss_pred             eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-------CCCCCeeEEEEcCC
Q 006220          444 TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-------GHLSDVDCVRWHIN  516 (656)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-------~~~~~V~~v~~~p~  516 (656)
                      .|.+|+.. |..+..+.=..+.|.++.|+.+ ..|++...||+++++|+.... ...+.       .....+.+..+..+
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence            59999877 5566554433378999999975 456677789999999986433 11111       11111222233335


Q ss_pred             CCEEEEEECCCcEEEEeCCCCe-eEEEEe---c-------CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220          517 CNYIATGSSDKTVRLWDVSSGE-CVRIFI---G-------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       517 ~~~l~tgs~dg~V~iwd~~~~~-~~~~~~---~-------h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      |-.+.+  .++.+.+..-.... ..+.+.   +       +........++.+....+....++.+.+.+-...+.   +
T Consensus       139 GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i  213 (410)
T PF04841_consen  139 GIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I  213 (410)
T ss_pred             CEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence            533333  34444444322211 111111   0       000000023444444555555555566444322211   1


Q ss_pred             eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       586 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                       ...+++..++.||+|+++|.-..+|.+.|.+..-.+.....
T Consensus       214 -~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~  254 (410)
T PF04841_consen  214 -DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF  254 (410)
T ss_pred             -cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence             12468999999999999999999999999887655544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.00095  Score=72.01  Aligned_cols=94  Identities=18%  Similarity=0.288  Sum_probs=78.9

Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeE-EEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL-SLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~-~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~  583 (656)
                      ...+.-+.|+|.-..+|++..+|.|.+..+. .+.+.++..|...++ +++|.|||+.||.|-.||+|++.|..++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3457889999999999999999999999887 777888877777777 99999999999999999999999999998877


Q ss_pred             eee-CCCccEEEEEEcC
Q 006220          584 PLM-GHTSCVWTLAYSC  599 (656)
Q Consensus       584 ~~~-~h~~~V~~l~~s~  599 (656)
                      ... .....|.++.|++
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            642 2335677777763

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.28  E-value=0.16  Score=54.33  Aligned_cols=81  Identities=20%  Similarity=0.271  Sum_probs=57.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEE--EEcCC----------------CC-EEEEE
Q 006220          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTL--AYSCE----------------GS-LLASG  607 (656)
Q Consensus       547 ~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l--~~s~~----------------~~-~l~sg  607 (656)
                      ...+.+|+.+|++++.|+...=|+|.++|+.++..+.-++|..+.=...  .....                .. +++-+
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            3457889999999999998888999999999998887777655321110  00111                11 33445


Q ss_pred             ECCCcEEEEeCCCCCceeec
Q 006220          608 SADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       608 s~Dg~I~iWd~~~~~~~~~~  627 (656)
                      -.-|.|-||.++.+.++...
T Consensus       387 prRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             ccCCeEEEEecCCCCEEEEE
Confidence            67899999999998877543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.0012  Score=71.17  Aligned_cols=94  Identities=15%  Similarity=0.167  Sum_probs=81.2

Q ss_pred             ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEE-EEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~  499 (656)
                      ...|.-+.|+|.-..+|.+..+|.|.+..+. ++.+.++.-|+.++. +++|.|||+.+++|-.||+|++.|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3567889999999999999999999999998 888999988888888 99999999999999999999999999987776


Q ss_pred             Eec-CCCCCeeEEEEcC
Q 006220          500 IMA-GHLSDVDCVRWHI  515 (656)
Q Consensus       500 ~~~-~~~~~V~~v~~~p  515 (656)
                      .+. ....+|.++.|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            632 2346788888863

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.23  E-value=0.24  Score=53.77  Aligned_cols=192  Identities=17%  Similarity=0.150  Sum_probs=110.7

Q ss_pred             EEEEEEccCCCEEEEE-eCCC----eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC-----------cE
Q 006220          424 VYSASFSPLGDFILSS-SADT----TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-----------TA  487 (656)
Q Consensus       424 V~~l~~spd~~~L~s~-s~Dg----~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg-----------~i  487 (656)
                      +...++||+|++++.+ +..|    +|+++|+.+++.+...-. ......+.|.+++..|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4467899999987744 3333    599999999866543211 11122399999988877765333           37


Q ss_pred             EEEECCCCcee--EEecCCCCC--eeEEEEcCCCCEEEEEECC----CcEEEEeCCCC----eeEEEEecCCCCe-EEEE
Q 006220          488 RIWSMDRIQPL--RIMAGHLSD--VDCVRWHINCNYIATGSSD----KTVRLWDVSSG----ECVRIFIGHRSMI-LSLA  554 (656)
Q Consensus       488 ~lwd~~~~~~~--~~~~~~~~~--V~~v~~~p~~~~l~tgs~d----g~V~iwd~~~~----~~~~~~~~h~~~i-~~l~  554 (656)
                      +.|.+.+...-  ..+......  ...+..++++++|+..+..    ..+++.|+..+    .....+......+ ..+.
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            88888776543  555544433  4678889999998764432    34888888875    2333333333333 3343


Q ss_pred             EcCCCCEEEEE---ECCCcEEEEeCCCCee---eEeeeCCCc--cEEEEEEcCCCCEE-EEEECCC--cEEEEeCC
Q 006220          555 MSPDGRYMASG---DEDGTIMMWDLASGRC---VTPLMGHTS--CVWTLAYSCEGSLL-ASGSADC--TVKLWDVT  619 (656)
Q Consensus       555 ~sp~g~~L~s~---~~dg~I~iwD~~~~~~---~~~~~~h~~--~V~~l~~s~~~~~l-~sgs~Dg--~I~iWd~~  619 (656)
                      .. .+.+++..   ...+.|.-.++.....   ...+..|..  .+..+..  .+.+| ++.-.++  .|++|++.
T Consensus       285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred             cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence            33 44444433   2346777778876652   224445554  4545544  34444 4444444  58899998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.22  E-value=0.028  Score=63.47  Aligned_cols=180  Identities=14%  Similarity=0.093  Sum_probs=104.8

Q ss_pred             cCEEEEEEccCCCEEEEEe------CCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC---------
Q 006220          422 GPVYSASFSPLGDFILSSS------ADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD---------  484 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s------~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D---------  484 (656)
                      ..+.+.+++|+|+.++...      .|+  .|.+++.. +.......+.  ..+.-.|+|+|..+++.+..         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence            4577889999999876554      244  45555542 2222222332  37788999998888777533         


Q ss_pred             ---CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEE---EeCCCCeeEEE-----E-ecCCCCeEE
Q 006220          485 ---RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL---WDVSSGECVRI-----F-IGHRSMILS  552 (656)
Q Consensus       485 ---g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~i---wd~~~~~~~~~-----~-~~h~~~i~~  552 (656)
                         +.+.+.+++.+....   .....|..+.|+|+|..++... +|.|++   -....|. .+.     + .+-...+.+
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCcccc
Confidence               222222343332222   2245799999999999998766 577777   4433443 221     2 223334688


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCC-CeeeEeeeC--CCccEEEEEEcCCCCEEEEEECCCc
Q 006220          553 LAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCT  612 (656)
Q Consensus       553 l~~sp~g~~L~s~~~dg~I~iwD~~~-~~~~~~~~~--h~~~V~~l~~s~~~~~l~sgs~Dg~  612 (656)
                      +.|.+++.++ ++..++...+|.+.- |.....+.+  ...++.+++-++.  .++....+|.
T Consensus       502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             ceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence            9999998855 555555555565432 222222233  2467777777763  4555566663

>smart00320 WD40 WD40 repeats

Probab=97.22  E-value=0.001  Score=43.91  Aligned_cols=39  Identities=49%  Similarity=0.744  Sum_probs=34.6

Q ss_pred             CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      ++++..+..|...|.++.|++++..+++++.||.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355667778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.21  E-value=0.0036  Score=71.47  Aligned_cols=103  Identities=20%  Similarity=0.262  Sum_probs=76.9

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe
Q 006220          361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS  440 (656)
Q Consensus       361 ~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s  440 (656)
                      -.+..+|.|++.|.|-..|+.+.-.                           ....-..-.++|++++|+.+|+.++.|-
T Consensus        97 ~~~~~ivi~Ts~ghvl~~d~~~nL~---------------------------~~~~ne~v~~~Vtsvafn~dg~~l~~G~  149 (1206)
T KOG2079|consen   97 IVVVPIVIGTSHGHVLLSDMTGNLG---------------------------PLHQNERVQGPVTSVAFNQDGSLLLAGL  149 (1206)
T ss_pred             eeeeeEEEEcCchhhhhhhhhcccc---------------------------hhhcCCccCCcceeeEecCCCceecccc
Confidence            3567899999999998888764100                           0011112358999999999999999999


Q ss_pred             CCCeEEEEeccCCceeEEeeCCCccEEEEE---EecCCCEEEEEECCCcEEEEEC
Q 006220          441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQ---FNPQGHYFASSSHDRTARIWSM  492 (656)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~---~sp~~~~l~sgs~Dg~i~lwd~  492 (656)
                      .+|.|.+||+.++..++.+..|..|..++-   +..++..++++...|.  +|.+
T Consensus       150 ~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  150 GDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            999999999999999888887777765554   4446667888877776  5654

>smart00320 WD40 WD40 repeats

Probab=97.21  E-value=0.0011  Score=43.63  Aligned_cols=39  Identities=49%  Similarity=0.969  Sum_probs=34.8

Q ss_pred             CeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (656)
Q Consensus       537 ~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD  575 (656)
                      +++...+..|...|.++.|++++.++++++.||.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456677778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK10115 protease 2; Provisional

Probab=97.21  E-value=0.7  Score=53.59  Aligned_cols=236  Identities=12%  Similarity=0.070  Sum_probs=120.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220          354 LNCASISQDGSLVAGGFSDS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg-----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  428 (656)
                      +..+.+||||++||.+...+     .|++-|+.++...                           ...+. ..  -..++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l---------------------------~~~i~-~~--~~~~~  178 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY---------------------------PELLD-NV--EPSFV  178 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC---------------------------Ccccc-Cc--ceEEE
Confidence            67788999999999875432     3666666531100                           00000 11  14589


Q ss_pred             EccCCCEEEEEeCC------CeEEEEeccCC--ceeEEeeCCCccEE-EEEEecCCCEEEEEE---CCCcEEEEECC--C
Q 006220          429 FSPLGDFILSSSAD------TTIRLWSTKLN--ANLVCYKGHNYPVW-DVQFNPQGHYFASSS---HDRTARIWSMD--R  494 (656)
Q Consensus       429 ~spd~~~L~s~s~D------g~I~lwd~~~~--~~~~~~~~h~~~V~-~l~~sp~~~~l~sgs---~Dg~i~lwd~~--~  494 (656)
                      |++|++.|+.+..+      ..|+.+++.++  +....+.......+ .+..+.++.+++..+   .++.+.+|+.+  .
T Consensus       179 w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~  258 (686)
T PRK10115        179 WANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELAD  258 (686)
T ss_pred             EeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCC
Confidence            99999876655432      36778888877  33445554333444 333344777765554   34578888853  2


Q ss_pred             CceeEEecCCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCeeEEEEecC-C-CCeEEEEEcCCCCEEEEEECC
Q 006220          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRIFIGH-R-SMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d----g~V~iwd~~~~~~~~~~~~h-~-~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      +.+...+. +...+..-..+.. ..++.-+..    ..|...++.+......+..+ . ..|..+.++ .+.++++...+
T Consensus       259 ~~~~~~~~-~~~~~~~~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~  335 (686)
T PRK10115        259 AEPFVFLP-RRKDHEYSLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQR  335 (686)
T ss_pred             CCceEEEE-CCCCCEEEEEeCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeC
Confidence            33322222 2222222122333 333333322    23444455421222334444 3 367778877 33455566667


Q ss_pred             CcEEEEeCCC-CeeeEeee-CCCccEEEEEEc--CCC-CEEEEEEC---CCcEEEEeCCCCC
Q 006220          569 GTIMMWDLAS-GRCVTPLM-GHTSCVWTLAYS--CEG-SLLASGSA---DCTVKLWDVTTST  622 (656)
Q Consensus       569 g~I~iwD~~~-~~~~~~~~-~h~~~V~~l~~s--~~~-~~l~sgs~---Dg~I~iWd~~~~~  622 (656)
                      |.-+++-+.. +..+..+. .....+..+.++  +++ .++++.++   -+.+..+|+.+++
T Consensus       336 g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        336 GLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            7655554432 23344433 222233334444  333 34544443   3678888887754

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.11  E-value=0.18  Score=58.60  Aligned_cols=197  Identities=11%  Similarity=0.090  Sum_probs=122.4

Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeEEeeCCCcc--------EEEEEEec----------------CCCEEEEEECCCcEE
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYP--------VWDVQFNP----------------QGHYFASSSHDRTAR  488 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~--------V~~l~~sp----------------~~~~l~sgs~Dg~i~  488 (656)
                      +..++.|+.++.|.-.|..+++.+-.+......        ...+.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456777777888888888888877766532210        12233321                234788889999999


Q ss_pred             EEECCCCceeEEecCCCCCee-------------EEEEcC--CCCEEEEEEC----------CCcEEEEeCCCCeeEEEE
Q 006220          489 IWSMDRIQPLRIMAGHLSDVD-------------CVRWHI--NCNYIATGSS----------DKTVRLWDVSSGECVRIF  543 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~-------------~v~~~p--~~~~l~tgs~----------dg~V~iwd~~~~~~~~~~  543 (656)
                      -.|.++++....+.. .+.|.             .+.-.|  .+..+++|+.          +|.|+-+|.++|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998876642 12111             111112  2345666643          688999999999998776


Q ss_pred             ecC---------CC--------Ce-EEEEEcCCCCEEEEEE------------------CCCcEEEEeCCCCeeeEeeeC
Q 006220          544 IGH---------RS--------MI-LSLAMSPDGRYMASGD------------------EDGTIMMWDLASGRCVTPLMG  587 (656)
Q Consensus       544 ~~h---------~~--------~i-~~l~~sp~g~~L~s~~------------------~dg~I~iwD~~~~~~~~~~~~  587 (656)
                      ..-         .+        .+ ..+++.+....++.+.                  ..++|.-.|..+|+..-.++.
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            421         00        01 2234455444443322                  234577778888888776654


Q ss_pred             CCccEEE---------EEEcC-CCC---EEEEEECCCcEEEEeCCCCCceeecccc
Q 006220          588 HTSCVWT---------LAYSC-EGS---LLASGSADCTVKLWDVTTSTKVLKTEEK  630 (656)
Q Consensus       588 h~~~V~~---------l~~s~-~~~---~l~sgs~Dg~I~iWd~~~~~~~~~~~~~  630 (656)
                      ....++.         +.+.. +|+   .++.++.+|.+.+.|-.+++.+...++.
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e~  488 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEEV  488 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeeceee
Confidence            2111121         22322 553   7899999999999999999998876654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.09  E-value=0.018  Score=64.91  Aligned_cols=148  Identities=16%  Similarity=0.226  Sum_probs=90.2

Q ss_pred             ccEEEEEEecCCCEEEEEE------CCC--cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC---------
Q 006220          464 YPVWDVQFNPQGHYFASSS------HDR--TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---------  526 (656)
Q Consensus       464 ~~V~~l~~sp~~~~l~sgs------~Dg--~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---------  526 (656)
                      ..+.+.+++|+|..++...      .|.  .+.+++... .......+.  ..+.-.|+|+|..|++.+..         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence            4577899999999887765      244  444445422 222233332  37888999999888777533         


Q ss_pred             ---CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEE---EeCCCCe-ee---Eeee-CCCccEEEE
Q 006220          527 ---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM---WDLASGR-CV---TPLM-GHTSCVWTL  595 (656)
Q Consensus       527 ---g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~i---wD~~~~~-~~---~~~~-~h~~~V~~l  595 (656)
                         +.+.+.++..+....   ...+.|..+.|||||..|+... +|.|.+   -....|. .+   ..+. +-...+.++
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence               223333443333222   2346799999999999888766 477777   4444453 11   1111 222346889


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCC
Q 006220          596 AYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       596 ~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      .|..++.++ .+..++.-.+|.+.
T Consensus       503 ~W~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        503 DWRTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             eEecCCEEE-EEecCCCCceEEEe
Confidence            999998855 55555555566654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.05  E-value=0.2  Score=51.64  Aligned_cols=153  Identities=13%  Similarity=0.110  Sum_probs=95.7

Q ss_pred             CEEEEEeCCCeEEEEeccC-CceeEE----eeCCCccE-EEEEEecCCCEEEEEECCCcEEEEECCCCcee--EEecC--
Q 006220          434 DFILSSSADTTIRLWSTKL-NANLVC----YKGHNYPV-WDVQFNPQGHYFASSSHDRTARIWSMDRIQPL--RIMAG--  503 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~-~~~~~~----~~~h~~~V-~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~--~~~~~--  503 (656)
                      +.+.+-|.||++.-..++. |+....    +..-..++ ..-.+...+..++--+.+|.|+--|+......  ..+..  
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            4577888899998888873 433321    11112222 23345555666666788999999888765432  11110  


Q ss_pred             --------CCCCeeEEEEcCCCCEEEEEEC---C-------CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCC-EEEE
Q 006220          504 --------HLSDVDCVRWHINCNYIATGSS---D-------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMAS  564 (656)
Q Consensus       504 --------~~~~V~~v~~~p~~~~l~tgs~---d-------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~L~s  564 (656)
                              ..+.-.-+++|+..+.|++.-.   +       ..|.++|+.+++.++.+.. ..++.+|..+.+.+ +|++
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEE
T ss_pred             ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEE
Confidence                    1123345788876666655321   1       2588899999999998874 24688999998776 5655


Q ss_pred             E-ECCCcEEEEeCCCCeeeEeeeC
Q 006220          565 G-DEDGTIMMWDLASGRCVTPLMG  587 (656)
Q Consensus       565 ~-~~dg~I~iwD~~~~~~~~~~~~  587 (656)
                      . ..++.+.+||..+|+.+.++..
T Consensus       307 ~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  307 LSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EETTTTEEEEEETTT--EEEEE--
T ss_pred             EcCCCCeEEEEeCcCCcEEeehhc
Confidence            4 4578999999999999988864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.02  E-value=0.014  Score=66.79  Aligned_cols=140  Identities=16%  Similarity=0.168  Sum_probs=98.7

Q ss_pred             CCEEEEE-ECCCcEEEEECCCCceeEEecCCCCC-eeEEEEcCC-------CCEEEEEECCCcEEEEeCCCCe--eEEE-
Q 006220          475 GHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHIN-------CNYIATGSSDKTVRLWDVSSGE--CVRI-  542 (656)
Q Consensus       475 ~~~l~sg-s~Dg~i~lwd~~~~~~~~~~~~~~~~-V~~v~~~p~-------~~~l~tgs~dg~V~iwd~~~~~--~~~~-  542 (656)
                      .++++.. .....++-.|++.++.+..+..|... |..+  .|+       ....++|-.+..+..||.|-..  ++.. 
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence            3444433 35678999999999999999877543 4444  343       3456778889999999998642  3321 


Q ss_pred             Ee--cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE-eeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          543 FI--GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT-PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       543 ~~--~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      ..  ......+|++-+.+| +||+|+.+|.|++||- .|+.-+ .+.+-..+|.+|+.+.||++|++.+ +..+.+++..
T Consensus       571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            10  133467788777665 8999999999999994 444333 3446678999999999999988666 5577788864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.17  Score=52.29  Aligned_cols=194  Identities=15%  Similarity=0.130  Sum_probs=119.0

Q ss_pred             EEccCCCE-EEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC---
Q 006220          428 SFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---  503 (656)
Q Consensus       428 ~~spd~~~-L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~---  503 (656)
                      .|.++... +.+--..+.|.-|+..++.... +. +...+.++..-..+..|+++..  -+++++.+++..+..+..   
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence            47777764 4455567889999987664332 22 2223344444444445555533  356677665554333321   


Q ss_pred             --CCCCeeEEEEcCCCCEEEEEEC-----------CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC
Q 006220          504 --HLSDVDCVRWHINCNYIATGSS-----------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-DG  569 (656)
Q Consensus       504 --~~~~V~~v~~~p~~~~l~tgs~-----------dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~-dg  569 (656)
                        .....+.+...|+|.+.++...           -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+.. .+
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~  185 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN  185 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence              1244567788899887766443           133444443 57777777766666788999999988887765 47


Q ss_pred             cEEEEeCCC--C----e-eeEeeeCCCccEEEEEEcCCCCEEEEEECCC-cEEEEeCCCCCceeec
Q 006220          570 TIMMWDLAS--G----R-CVTPLMGHTSCVWTLAYSCEGSLLASGSADC-TVKLWDVTTSTKVLKT  627 (656)
Q Consensus       570 ~I~iwD~~~--~----~-~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg-~I~iWd~~~~~~~~~~  627 (656)
                      .|.-|++..  +    + ....+....+..-.++...+|.+.+++..+| .|.+|+.. ++.+...
T Consensus       186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i  250 (307)
T COG3386         186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI  250 (307)
T ss_pred             eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE
Confidence            788887752  1    1 1122223345566778888888886555554 89999988 6665544

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.95  E-value=0.44  Score=50.02  Aligned_cols=237  Identities=16%  Similarity=0.137  Sum_probs=120.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  432 (656)
                      .-+.|+|.|||+++++ ...|.|++++............                      .............++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~----------------------~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADL----------------------PEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-----------------------TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceeccc----------------------ccccccccCCcccceeccc
Confidence            3578999999988775 4799999999332110000000                      0112234567788999984


Q ss_pred             ---CCEEEEEeC-C--------CeEEEEeccCC-------cee-EEeeC---CCccEEEEEEecCCCEEEEEECCC----
Q 006220          433 ---GDFILSSSA-D--------TTIRLWSTKLN-------ANL-VCYKG---HNYPVWDVQFNPQGHYFASSSHDR----  485 (656)
Q Consensus       433 ---~~~L~s~s~-D--------g~I~lwd~~~~-------~~~-~~~~~---h~~~V~~l~~sp~~~~l~sgs~Dg----  485 (656)
                         +.+|..... .        ..|.-|.....       +.+ .....   .......|.|.|+|.+.++.+..+    
T Consensus        60 f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~  139 (331)
T PF07995_consen   60 FASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDN  139 (331)
T ss_dssp             CCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGG
T ss_pred             cCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCccc
Confidence               233333222 1        23444444433       111 11122   234456799999997766665432    


Q ss_pred             ---------cEEEEECCCCc------------eeEEec-CCCCCeeEEEEcCC-CCEEEEE-ECCCcEEEEeCCCC----
Q 006220          486 ---------TARIWSMDRIQ------------PLRIMA-GHLSDVDCVRWHIN-CNYIATG-SSDKTVRLWDVSSG----  537 (656)
Q Consensus       486 ---------~i~lwd~~~~~------------~~~~~~-~~~~~V~~v~~~p~-~~~l~tg-s~dg~V~iwd~~~~----  537 (656)
                               .|.-.+.+..-            ....+. |+. ....++|+|. |.++++= +.++.=.|--+..|    
T Consensus       140 ~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYG  218 (331)
T PF07995_consen  140 AQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYG  218 (331)
T ss_dssp             GCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--
T ss_pred             ccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCC
Confidence                     23223322110            011111 232 2457899998 5544431 22322223222211    


Q ss_pred             -------------------------eeEEEEecCCCCeEEEEEcC-------CCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220          538 -------------------------ECVRIFIGHRSMILSLAMSP-------DGRYMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       538 -------------------------~~~~~~~~h~~~i~~l~~sp-------~g~~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                                               .++..+..| ..++.+.|..       .|.++++.-..+.|....+..+..+...
T Consensus       219 WP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~  297 (331)
T PF07995_consen  219 WPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEE  297 (331)
T ss_dssp             TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred             CCCCcCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccce
Confidence                                     122333333 4566677764       4567777666778888888755433221


Q ss_pred             ----eCCCccEEEEEEcCCCCEEEEEECCCcEE
Q 006220          586 ----MGHTSCVWTLAYSCEGSLLASGSADCTVK  614 (656)
Q Consensus       586 ----~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~  614 (656)
                          ......+..+++.|||.++++.+.+|.|.
T Consensus       298 ~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  298 EEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             EEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence                23445899999999999999988888874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.94  E-value=0.5  Score=47.09  Aligned_cols=182  Identities=12%  Similarity=0.050  Sum_probs=117.1

Q ss_pred             cCEEEEEEccCCCEEEEEeCCC--eEEEEeccCCceeEEeeCC-CccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220          422 GPVYSASFSPLGDFILSSSADT--TIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg--~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                      .-..++.|..++.++-|.+.-|  .|+.+|+.+++......-. ..---.+.... +..+...=.++.+.+||..+.+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence            3456788877888888888766  6899999999876554422 22233444442 333333447899999999999888


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEECCCcEEE
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMM  573 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~L~s~~~dg~I~i  573 (656)
                      ..+.- .+.=..++  .++..|+.+.....++++|..+.+.++.+....     ..++-+.|- +|...|-.-....|..
T Consensus       124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~  199 (264)
T PF05096_consen  124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR  199 (264)
T ss_dssp             EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence            88763 34445555  467778887777899999999888777665322     245567775 5666666666778888


Q ss_pred             EeCCCCeeeEeeeC------------C---CccEEEEEEcCCCCEEEEEE
Q 006220          574 WDLASGRCVTPLMG------------H---TSCVWTLAYSCEGSLLASGS  608 (656)
Q Consensus       574 wD~~~~~~~~~~~~------------h---~~~V~~l~~s~~~~~l~sgs  608 (656)
                      .|..+|+.+..+..            +   ..-.+.++|.|....|...|
T Consensus       200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            89999988876520            1   24578999998766554444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.92  E-value=0.0011  Score=63.19  Aligned_cols=143  Identities=16%  Similarity=0.124  Sum_probs=88.9

Q ss_pred             EEEEECCCcEEEEECCCCcee-EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEE-
Q 006220          478 FASSSHDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLA-  554 (656)
Q Consensus       478 l~sgs~Dg~i~lwd~~~~~~~-~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~-  554 (656)
                      +...+.||.++-++++..+.. +.-.-+......+   .-+..+++|+.+|.|.+|..... .....+..-...|.++. 
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            444566777777776543211 1111111111111   23457899999999999987621 11111222223333332 


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC-ccEEEEEEcCCCCEEEEE--ECCCcEEEEeCCCCCc
Q 006220          555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASG--SADCTVKLWDVTTSTK  623 (656)
Q Consensus       555 ~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~sg--s~Dg~I~iWd~~~~~~  623 (656)
                      --.++.+..+++.||.|+.|++..++.+.....|+ .++..+..+..+..++.+  |.|..++.|++..-..
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d  181 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD  181 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence            22245688899999999999999998888877787 666666666677777777  7888888888876443

>PHA02713 hypothetical protein; Provisional

Probab=96.91  E-value=0.075  Score=59.98  Aligned_cols=187  Identities=10%  Similarity=0.035  Sum_probs=96.4

Q ss_pred             CCCEEEEEeCC------CeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEEECCC-----cEEEEECCCCcee
Q 006220          432 LGDFILSSSAD------TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDRIQPL  498 (656)
Q Consensus       432 d~~~L~s~s~D------g~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sgs~Dg-----~i~lwd~~~~~~~  498 (656)
                      ++...+.|+.+      ..+..||..++.-..  .+....... +++ .-+|...+.||.++     ++..||..+.+-.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            45666666643      347778876553211  111111111 122 22677778888754     4778888765322


Q ss_pred             E--EecCCCCCeeEEEEcCCCCEEEEEECCC-----------------------cEEEEeCCCCeeEEEEecCCCCeEEE
Q 006220          499 R--IMAGHLSDVDCVRWHINCNYIATGSSDK-----------------------TVRLWDVSSGECVRIFIGHRSMILSL  553 (656)
Q Consensus       499 ~--~~~~~~~~V~~v~~~p~~~~l~tgs~dg-----------------------~V~iwd~~~~~~~~~~~~h~~~i~~l  553 (656)
                      .  .+.........+.  -++...+.|+.++                       .|..||..+.+-...-.-.......-
T Consensus       381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~  458 (557)
T PHA02713        381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG  458 (557)
T ss_pred             ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence            2  1111111112222  2566667776542                       47778887664332111111111111


Q ss_pred             EEcCCCCEEEEEECC------CcEEEEeCCC---CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCC--cEEEEeCCCCC
Q 006220          554 AMSPDGRYMASGDED------GTIMMWDLAS---GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC--TVKLWDVTTST  622 (656)
Q Consensus       554 ~~sp~g~~L~s~~~d------g~I~iwD~~~---~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg--~I~iWd~~~~~  622 (656)
                      ...-+|+..+.||.+      ..+..||..+   ...+..+.........+.+  +|.+.++||.||  ++-.||..+.+
T Consensus       459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            222346766777654      2467899876   3344444433333333333  688999999888  67777777765


Q ss_pred             ce
Q 006220          623 KV  624 (656)
Q Consensus       623 ~~  624 (656)
                      -.
T Consensus       537 W~  538 (557)
T PHA02713        537 WN  538 (557)
T ss_pred             cc
Confidence            43

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.90  E-value=0.038  Score=47.17  Aligned_cols=100  Identities=14%  Similarity=0.090  Sum_probs=65.7

Q ss_pred             eEEEEEcC---C-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          354 LNCASISQ---D-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       354 V~~l~fs~---d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      |+++++..   | .+-|++|+.|..||||+-..                               ......-++.|+++.-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------------------------------~~~Ei~e~~~v~~L~~   50 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------------------------------IVAEITETDKVTSLCS   50 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------------------------------EEEEEecccceEEEEE
Confidence            55666543   3 25799999999999998442                               1222234567778877


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-C--C-CEEEEEECCCcEE
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-Q--G-HYFASSSHDRTAR  488 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~--~-~~l~sgs~Dg~i~  488 (656)
                      ... ..++.+..+|+|-+|+-.  ..+...+.... +.++.+.. +  | .-|++|-.+|.|-
T Consensus        51 ~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   51 LGG-GRFAYALANGTVGVYDRS--QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cCC-CEEEEEecCCEEEEEeCc--ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            765 568889999999999763  44455554333 55565544 2  2 2588888888763

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.018  Score=65.96  Aligned_cols=100  Identities=20%  Similarity=0.286  Sum_probs=76.6

Q ss_pred             CCEEEEEeCCCeEEEEeccCCce-eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEE
Q 006220          433 GDFILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV  511 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v  511 (656)
                      +..++.|+..|.|-..|+...-+ ...-....++|.+++|+.+|..++.|-.+|.|.+||+.++++.+.+..|..+++.+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            55788899899999988875422 12222347899999999999999999999999999999999999988777776665


Q ss_pred             EEc---CCCCEEEEEECCCcEEEEeC
Q 006220          512 RWH---INCNYIATGSSDKTVRLWDV  534 (656)
Q Consensus       512 ~~~---p~~~~l~tgs~dg~V~iwd~  534 (656)
                      -++   ..+..++++...|.  +|.+
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEEE
Confidence            544   34456778777776  5544

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=96.86  E-value=0.0018  Score=42.75  Aligned_cols=31  Identities=23%  Similarity=0.431  Sum_probs=28.2

Q ss_pred             chHHHHHHHHHHHHhcCccHHHHHHHHHHhc
Q 006220            2 DELQVVEFVATYLKKKGFSEAENALQAEIQR   32 (656)
Q Consensus         2 ~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~   32 (656)
                      ...+++++|++||.+.||..|.+.|.+|++.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~   32 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGL   32 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCC
Confidence            4578999999999999999999999999864

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.84  E-value=0.11  Score=44.38  Aligned_cols=100  Identities=20%  Similarity=0.225  Sum_probs=68.1

Q ss_pred             eeEEEEcC---C-CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220          508 VDCVRWHI---N-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (656)
Q Consensus       508 V~~v~~~p---~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~  583 (656)
                      |+++++..   + .+.|++||.|..||+|+  ....+..+. ....|++++-... ..++.+..+|+|-+|+-  ...+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            55666553   2 26899999999999997  446666665 4467888877766 56888889999999985  33344


Q ss_pred             eeeCCCccEEEEEEcC-C--C-CEEEEEECCCcEE
Q 006220          584 PLMGHTSCVWTLAYSC-E--G-SLLASGSADCTVK  614 (656)
Q Consensus       584 ~~~~h~~~V~~l~~s~-~--~-~~l~sgs~Dg~I~  614 (656)
                      +.+... .+.++++.. +  | .-|++|-.+|.|-
T Consensus        76 RiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            444322 355665533 2  2 3688888888874

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.82  E-value=0.64  Score=52.09  Aligned_cols=188  Identities=12%  Similarity=0.136  Sum_probs=113.0

Q ss_pred             CCeEEEEeccCCceeEEeeCC-------------------------------CccEE-EEEEecCCCEEEEEECC-----
Q 006220          442 DTTIRLWSTKLNANLVCYKGH-------------------------------NYPVW-DVQFNPQGHYFASSSHD-----  484 (656)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h-------------------------------~~~V~-~l~~sp~~~~l~sgs~D-----  484 (656)
                      +|.|..+|..+++.+-.+..-                               ...+| .+.+.|...+++.+..+     
T Consensus       180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~  259 (527)
T TIGR03075       180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN  259 (527)
T ss_pred             CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence            678888888888776543221                               11233 23666666666665422     


Q ss_pred             C-----------cEEEEECCCCceeEEecCCCCCe---------eEEEEcCCCC---EEEEEECCCcEEEEeCCCCeeEE
Q 006220          485 R-----------TARIWSMDRIQPLRIMAGHLSDV---------DCVRWHINCN---YIATGSSDKTVRLWDVSSGECVR  541 (656)
Q Consensus       485 g-----------~i~lwd~~~~~~~~~~~~~~~~V---------~~v~~~p~~~---~l~tgs~dg~V~iwd~~~~~~~~  541 (656)
                      +           +|.-.|+++++..-.+.....++         .-+....+|+   .++.++.+|.+++.|.++|+.+.
T Consensus       260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            2           56777888888876665322222         2223334665   77889999999999999998862


Q ss_pred             E--------Ee---c-CC-CC-----------------e-----------EEEEEcCCCCEEEEEECC------------
Q 006220          542 I--------FI---G-HR-SM-----------------I-----------LSLAMSPDGRYMASGDED------------  568 (656)
Q Consensus       542 ~--------~~---~-h~-~~-----------------i-----------~~l~~sp~g~~L~s~~~d------------  568 (656)
                      .        +.   . .. .+                 +           ..++++|+..+++....+            
T Consensus       340 ~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~  419 (527)
T TIGR03075       340 AEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSY  419 (527)
T ss_pred             cccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEeccccccccccccccc
Confidence            1        10   0 00 00                 0           115566665555443322            


Q ss_pred             ---------------------CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          569 ---------------------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       569 ---------------------g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                                           |.|.-||+.+|+..-+.........+. ..-.+.+++.++.||.++.+|..+++.+.+.
T Consensus       420 ~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~  498 (527)
T TIGR03075       420 KKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKF  498 (527)
T ss_pred             CCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence                                 457777888887766554222111111 1124557778888999999999999998876


Q ss_pred             ccc
Q 006220          628 EEK  630 (656)
Q Consensus       628 ~~~  630 (656)
                      ...
T Consensus       499 ~~g  501 (527)
T TIGR03075       499 KTG  501 (527)
T ss_pred             eCC
Confidence            543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.79  E-value=0.52  Score=49.57  Aligned_cols=182  Identities=12%  Similarity=0.053  Sum_probs=93.5

Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEe--cCCCEEEEEEC--------------------
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN--PQGHYFASSSH--------------------  483 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~sgs~--------------------  483 (656)
                      ...++|+++.++-.....+|+-.|+.+.+....+.....-+-...|.  .++..++-.-.                    
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a  164 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA  164 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence            46677888888766666789999999988777776665555445564  34555433211                    


Q ss_pred             --CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCC-----cEEEEeCCC-CeeEEEEecCCC--CeEEE
Q 006220          484 --DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSS-GECVRIFIGHRS--MILSL  553 (656)
Q Consensus       484 --Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg-----~V~iwd~~~-~~~~~~~~~h~~--~i~~l  553 (656)
                        .+.|.-.|+.+++....+. ....+..+.|+|....+++=+..|     .-|||-+++ |...+.+..+..  .+..=
T Consensus       165 ~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHE  243 (386)
T PF14583_consen  165 RPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHE  243 (386)
T ss_dssp             ---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEE
T ss_pred             CCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccc
Confidence              2345556777766555554 346678899999665555543332     236676543 333443333322  34445


Q ss_pred             EEcCCCCEEEEEE-----CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC
Q 006220          554 AMSPDGRYMASGD-----EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD  610 (656)
Q Consensus       554 ~~sp~g~~L~s~~-----~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D  610 (656)
                      -|.|||..|.--+     .+..|.-+|..+++.......  .....+--++||++++.=|.|
T Consensus       244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred             cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence            6899998665422     244577778887754322221  134456668899988765554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.64  E-value=0.68  Score=49.19  Aligned_cols=179  Identities=16%  Similarity=0.198  Sum_probs=88.8

Q ss_pred             ccCCCEEEEEeC------CCeEEEEeccCCceeEEeeCC---CccEEEEEEecCCCEEEEEEC-----------------
Q 006220          430 SPLGDFILSSSA------DTTIRLWSTKLNANLVCYKGH---NYPVWDVQFNPQGHYFASSSH-----------------  483 (656)
Q Consensus       430 spd~~~L~s~s~------Dg~I~lwd~~~~~~~~~~~~h---~~~V~~l~~sp~~~~l~sgs~-----------------  483 (656)
                      -|+|+.++|+-.      -|.+.+.|-++..........   ..--.++.|.|..+.++|...                 
T Consensus       138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~  217 (461)
T PF05694_consen  138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA  217 (461)
T ss_dssp             -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred             cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence            367777776533      256888888877776665542   233567888898888888653                 


Q ss_pred             ---CCcEEEEECCCCceeEEecCCC--CCeeEEEEc--CCCCEEEEEE-CCCcEEEEeC-CCCee----EEEEec-----
Q 006220          484 ---DRTARIWSMDRIQPLRIMAGHL--SDVDCVRWH--INCNYIATGS-SDKTVRLWDV-SSGEC----VRIFIG-----  545 (656)
Q Consensus       484 ---Dg~i~lwd~~~~~~~~~~~~~~--~~V~~v~~~--p~~~~l~tgs-~dg~V~iwd~-~~~~~----~~~~~~-----  545 (656)
                         ..++.+||+.+.+.++.+.-..  ..+..|.|.  |+..+=++|+ -.++|..|-- ..++-    +..+..     
T Consensus       218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence               4679999999999998887432  234566775  4455544443 3344544433 33321    111111     


Q ss_pred             -----C-------CCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCC---eeeEeee-C---------------CCccEE
Q 006220          546 -----H-------RSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG---RCVTPLM-G---------------HTSCVW  593 (656)
Q Consensus       546 -----h-------~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~---~~~~~~~-~---------------h~~~V~  593 (656)
                           .       ..-|+.|.+|.|.++|..+. .+|.|+.||+..-   +++.++. +               -.+...
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq  377 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ  377 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred             ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence                 0       24578999999999988765 7899999999653   2332221 1               113346


Q ss_pred             EEEEcCCCCEEEEEE
Q 006220          594 TLAYSCEGSLLASGS  608 (656)
Q Consensus       594 ~l~~s~~~~~l~sgs  608 (656)
                      -+..|.||+.|...+
T Consensus       378 MvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  378 MVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -EEE-TTSSEEEEE-
T ss_pred             eEEEccCCeEEEEEe
Confidence            788899998876654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.62  E-value=0.085  Score=56.33  Aligned_cols=142  Identities=14%  Similarity=0.177  Sum_probs=99.3

Q ss_pred             CCCE-EEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCC-------EEEEEECCCcEEEEeCCCC-e-eEEEE
Q 006220          474 QGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-------YIATGSSDKTVRLWDVSSG-E-CVRIF  543 (656)
Q Consensus       474 ~~~~-l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~-------~l~tgs~dg~V~iwd~~~~-~-~~~~~  543 (656)
                      +.++ +.++.....++-.|++.++.+....-+.. |+-+.+.|+..       .-+.|-+|..|.-||.|-. . .+..-
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            3344 44555667789999999999998886654 77788877553       2345778889999999833 2 22222


Q ss_pred             ecCC----CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE-eeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          544 IGHR----SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT-PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       544 ~~h~----~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      .+|.    ....|.+-..+ .+|++|+.+|.|++||- .+...+ .+.+-..+|..+..+.+|++|++.+ +..+.+-++
T Consensus       423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            3332    23555555444 48999999999999996 554443 4567778999999999999887555 556777665


Q ss_pred             C
Q 006220          619 T  619 (656)
Q Consensus       619 ~  619 (656)
                      .
T Consensus       500 ~  500 (644)
T KOG2395|consen  500 L  500 (644)
T ss_pred             e
Confidence            4

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.59  E-value=0.42  Score=47.86  Aligned_cols=167  Identities=12%  Similarity=0.169  Sum_probs=114.4

Q ss_pred             cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC-CccEEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 006220          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~  497 (656)
                      |-...|.++.|+|+.+.|++......-.||=...|..+.++.-. -...-.|.|..+|.+.++--.++.+.++.++....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            44455999999999999999888888888877778888776531 22334688888887777777889999988765432


Q ss_pred             eEE----------ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee---EEEEecCC-------CCeEEEEEcC
Q 006220          498 LRI----------MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC---VRIFIGHR-------SMILSLAMSP  557 (656)
Q Consensus       498 ~~~----------~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~---~~~~~~h~-------~~i~~l~~sp  557 (656)
                      +..          ..........++|.|....|+.+-.-.-+.||.+..+..   +.....+.       ..|+.+.|.+
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~  242 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA  242 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence            211          111145578899999999999988888888887764331   11111111       2467788886


Q ss_pred             -CCCEEEEEECCCcEEEEeCCCCeeeEeee
Q 006220          558 -DGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (656)
Q Consensus       558 -~g~~L~s~~~dg~I~iwD~~~~~~~~~~~  586 (656)
                       .+.+|+-+.+++.+.-.|. .|..+..+.
T Consensus       243 ~~~~LLVLS~ESr~l~Evd~-~G~~~~~ls  271 (316)
T COG3204         243 ITNSLLVLSDESRRLLEVDL-SGEVIELLS  271 (316)
T ss_pred             CCCcEEEEecCCceEEEEec-CCCeeeeEE
Confidence             4567777888888888886 455555443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.52  E-value=0.98  Score=48.22  Aligned_cols=146  Identities=10%  Similarity=0.098  Sum_probs=79.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeC-----------CC-cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec
Q 006220          352 NGLNCASISQDGSLVAGGFS-----------DS-SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~-----------dg-~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  419 (656)
                      .....++|.++|+++++-..           .+ .|.+++-...                        ++.......+..
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dg------------------------dG~~d~~~vfa~   69 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADG------------------------DGKYDKSNVFAE   69 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCC------------------------CCCcceeEEeec
Confidence            34678899999998877531           22 5555543210                        011112223333


Q ss_pred             CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC-----ceeEE---eeC----CCccEEEEEEecCCCEEEEEECC---
Q 006220          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-----ANLVC---YKG----HNYPVWDVQFNPQGHYFASSSHD---  484 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~-----~~~~~---~~~----h~~~V~~l~~sp~~~~l~sgs~D---  484 (656)
                      .-....++++.+++  |++++.....++.+....     +....   +..    +......+.|.|+|.+.++.+..   
T Consensus        70 ~l~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~  147 (367)
T TIGR02604        70 ELSMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLAS  147 (367)
T ss_pred             CCCCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCc
Confidence            33456788998888  444444433334454321     11111   211    13447789999999876655421   


Q ss_pred             ----------------CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEE
Q 006220          485 ----------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS  524 (656)
Q Consensus       485 ----------------g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs  524 (656)
                                      |.+.-++.+..+. ..+.........++|+|+|+.+++-.
T Consensus       148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       148 KVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             eeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence                            4455556555443 33333334567899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA03098 kelch-like protein; Provisional

Probab=96.50  E-value=0.13  Score=58.07  Aligned_cols=185  Identities=11%  Similarity=0.058  Sum_probs=87.5

Q ss_pred             CCCEEEEEeCCC------eEEEEeccCCceeEEe--eCCCccEEEEEEecCCCEEEEEECC-----CcEEEEECCCCcee
Q 006220          432 LGDFILSSSADT------TIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQPL  498 (656)
Q Consensus       432 d~~~L~s~s~Dg------~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~sgs~D-----g~i~lwd~~~~~~~  498 (656)
                      ++..++.|+.++      .+..||..+++-...-  ....... +++ .-++..++.||.+     ..+..||..+.+-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            355566665432      4677787655432211  1011111 122 2257777888765     34667887665422


Q ss_pred             EEecCCCCC-eeEEEEcCCCCEEEEEECC------CcEEEEeCCCCeeEEEEecCCCC-eEEEEEcCCCCEEEEEECC--
Q 006220          499 RIMAGHLSD-VDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDED--  568 (656)
Q Consensus       499 ~~~~~~~~~-V~~v~~~p~~~~l~tgs~d------g~V~iwd~~~~~~~~~~~~h~~~-i~~l~~sp~g~~L~s~~~d--  568 (656)
                      ..-...... -.+++ .-++...+.|+.+      ..+..||..+++-...-...... -.++ ...++..++.||.+  
T Consensus       372 ~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~  449 (534)
T PHA03098        372 EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISYI  449 (534)
T ss_pred             eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccCC
Confidence            211100011 11122 2355666666632      45888998776433211100010 1122 22356666666543  


Q ss_pred             ------CcEEEEeCCCCeee--EeeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCC
Q 006220          569 ------GTIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTST  622 (656)
Q Consensus       569 ------g~I~iwD~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~  622 (656)
                            ..+.+||..+++-.  ..+.........+.+  ++.+++.||.+     +.|.++|..+..
T Consensus       450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence                  23888898765432  222111111112222  67777777754     467778776643

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.40  E-value=1.3  Score=44.78  Aligned_cols=224  Identities=16%  Similarity=0.224  Sum_probs=126.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee-----cCccCEEEEE
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-----GHSGPVYSAS  428 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~h~~~V~~l~  428 (656)
                      -+.++|+|.+.+-++....+...+||..........                     ........     ...+..+.+.
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~---------------------~~L~vtiP~~~~~~~~~~PTGiV   83 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ---------------------DPLVVVIPAPPPLAAEGTPTGQV   83 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCc---------------------cceEEEecCCCCCCCCCCccEEE
Confidence            477899999988888888899999998732111000                     00001111     0123345555


Q ss_pred             EccCCC------------EEEEEeCCCeEEEEeccCCce-----eEEee-CCCccE-EEEEEec--CCCEEEEEE-CCCc
Q 006220          429 FSPLGD------------FILSSSADTTIRLWSTKLNAN-----LVCYK-GHNYPV-WDVQFNP--QGHYFASSS-HDRT  486 (656)
Q Consensus       429 ~spd~~------------~L~s~s~Dg~I~lwd~~~~~~-----~~~~~-~h~~~V-~~l~~sp--~~~~l~sgs-~Dg~  486 (656)
                      |+....            .++.+++||+|.-|...-...     ...+. +....| ..+++..  .+.+|..+. ..++
T Consensus        84 fN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~  163 (336)
T TIGR03118        84 FNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGR  163 (336)
T ss_pred             EeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCc
Confidence            553222            367889999999998532222     12222 112233 3455543  345555543 7789


Q ss_pred             EEEEECCCCcee--EEecCC-----CCC-----------eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec--C
Q 006220          487 ARIWSMDRIQPL--RIMAGH-----LSD-----------VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--H  546 (656)
Q Consensus       487 i~lwd~~~~~~~--~~~~~~-----~~~-----------V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~--h  546 (656)
                      |.++|-.-.+..  ..+...     -.+           |+-..-.++.+.=+.|..-|.|-+||. .|..++.+..  .
T Consensus       164 IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~  242 (336)
T TIGR03118       164 IDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGR  242 (336)
T ss_pred             eEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCc
Confidence            999985432211  001100     000           111111222222233445578999996 5777777742  2


Q ss_pred             CCCeEEEEEcC------CCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC------ccEEEEEEcC
Q 006220          547 RSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPLMGHT------SCVWTLAYSC  599 (656)
Q Consensus       547 ~~~i~~l~~sp------~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~------~~V~~l~~s~  599 (656)
                      -..-..|+..|      .|.+|+--..||+|..||..+++.+..+....      ..+|.|+|..
T Consensus       243 LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       243 LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            22345566655      57788888889999999999999888776533      3568888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK10115 protease 2; Provisional

Probab=96.37  E-value=2.1  Score=49.63  Aligned_cols=194  Identities=8%  Similarity=0.000  Sum_probs=104.8

Q ss_pred             cCEEEEEEccCCCEEEEEeC-----CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC------CcEEEE
Q 006220          422 GPVYSASFSPLGDFILSSSA-----DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD------RTARIW  490 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~-----Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D------g~i~lw  490 (656)
                      -.+..+.|||++++|+.+..     ..+|++.|+.++..+...-...  -..++|+++++.|+.+..+      ..|+.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            34667889999998775433     2358899998776432211111  1459999999877666542      367778


Q ss_pred             ECCCC--ceeEEecCCCCCeeEEEE-cCCCCEEEEEEC---CCcEEEEeCC--CCeeEEEEecCCCCeEEEEEcCCCCEE
Q 006220          491 SMDRI--QPLRIMAGHLSDVDCVRW-HINCNYIATGSS---DKTVRLWDVS--SGECVRIFIGHRSMILSLAMSPDGRYM  562 (656)
Q Consensus       491 d~~~~--~~~~~~~~~~~~V~~v~~-~p~~~~l~tgs~---dg~V~iwd~~--~~~~~~~~~~h~~~i~~l~~sp~g~~L  562 (656)
                      ++.+.  +....+...........+ +.++.+++..+.   ++.+.+|+..  ++.....+.........+. +..+.++
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly  283 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY  283 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence            88877  444455543333332233 347887765443   4578898853  3443222222222222222 2223333


Q ss_pred             EEEE---CCCcEEEEeCCCCeeeEeeeCC-C-ccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          563 ASGD---EDGTIMMWDLASGRCVTPLMGH-T-SCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       563 ~s~~---~dg~I~iwD~~~~~~~~~~~~h-~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      +...   ....|...++........+..+ . ..|..+.+. .+.++++...+|.-+++-+.
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            3222   1223444455421122333344 2 368888887 34566666777775555544

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.31  E-value=0.052  Score=57.90  Aligned_cols=142  Identities=13%  Similarity=0.174  Sum_probs=98.4

Q ss_pred             CCCE-EEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-------EEEEEECCCcEEEEECCCCc--eeEEe
Q 006220          432 LGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-------YFASSSHDRTARIWSMDRIQ--PLRIM  501 (656)
Q Consensus       432 d~~~-L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-------~l~sgs~Dg~i~lwd~~~~~--~~~~~  501 (656)
                      +.++ |.++..-..++-.|+..|+.+...+-+.. |.-+.+.|+..       .-+.|-.|..|.-||.+-..  .+...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            3443 44566666788899999999988887765 77777777542       22445578889999987322  22222


Q ss_pred             cCC----CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          502 AGH----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       502 ~~~----~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      .+|    .....|.+-..+ .+|++||.+|.||+||--.......+.+-..+|..+..+.+|++|++.+ +..+.+.++
T Consensus       423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            222    234556655444 4899999999999999733333445677888999999999999988765 456777765

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.27  E-value=0.6  Score=52.33  Aligned_cols=190  Identities=13%  Similarity=0.068  Sum_probs=118.3

Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeEEeeCCC-ccEE----------EEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVW----------DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~----------~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      +..++.++.++.|.-.|..+++.+-.+.... ..+.          .+++  .+..++.++.|+.+...|.++++.+-..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4566777778889999999988877664321 1111          1122  2356778888999999999999988665


Q ss_pred             cCCCCC-eeEEEEcC--CCCEEEEEEC------CCcEEEEeCCCCeeEEEEecCCC------------------------
Q 006220          502 AGHLSD-VDCVRWHI--NCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRS------------------------  548 (656)
Q Consensus       502 ~~~~~~-V~~v~~~p--~~~~l~tgs~------dg~V~iwd~~~~~~~~~~~~h~~------------------------  548 (656)
                      ...... -..+.-+|  .+..+++++.      +|.|+-+|..+|+.+..+..-..                        
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            421100 00111112  1234555543      68999999999998866532111                        


Q ss_pred             -------Ce-EEEEEcCCCCEEEEEECC-----C-----------cEEEEeCCCCeeeEeeeCCCccEEE---------E
Q 006220          549 -------MI-LSLAMSPDGRYMASGDED-----G-----------TIMMWDLASGRCVTPLMGHTSCVWT---------L  595 (656)
Q Consensus       549 -------~i-~~l~~sp~g~~L~s~~~d-----g-----------~I~iwD~~~~~~~~~~~~h~~~V~~---------l  595 (656)
                             .+ ..+++.|...+++.+...     +           +|.-.|+++|+..-.++.....++.         +
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~  306 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF  306 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence                   01 124566666666655421     2           6777789999988776642222222         2


Q ss_pred             EEcCCCC---EEEEEECCCcEEEEeCCCCCce
Q 006220          596 AYSCEGS---LLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       596 ~~s~~~~---~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      ....+|+   .++.++.+|.+.+.|-.+++.+
T Consensus       307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            2334665   7889999999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.22  E-value=0.014  Score=55.85  Aligned_cols=105  Identities=17%  Similarity=0.170  Sum_probs=69.7

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE-EEEccCCCEEEEEeC
Q 006220          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS-ASFSPLGDFILSSSA  441 (656)
Q Consensus       363 g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-l~~spd~~~L~s~s~  441 (656)
                      +.-+++|+.+|.|.+|++...+..                           ......-...|.+ +.--.++.+.++++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~---------------------------~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~  122 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAH---------------------------SDRVCSGEESIDLGIPNGRDSSLGCVGAQ  122 (238)
T ss_pred             CceEEeecccceEEEecCCccchH---------------------------HHhhhcccccceeccccccccceeEEecc
Confidence            556889999999999997631110                           0001111122222 222334557889999


Q ss_pred             CCeEEEEeccCCceeEEeeCCC-ccEEEEEEecCCCEEEEE--ECCCcEEEEECCC
Q 006220          442 DTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASS--SHDRTARIWSMDR  494 (656)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~sg--s~Dg~i~lwd~~~  494 (656)
                      ||.|+.|++.-++.+.....|+ .++.....+..+..++++  |.|..++.|++..
T Consensus       123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            9999999999887777666677 566666666666777777  7778888887764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.20  E-value=0.87  Score=46.22  Aligned_cols=144  Identities=13%  Similarity=0.165  Sum_probs=91.5

Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe----------
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM----------  501 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~----------  501 (656)
                      .++.|+.|+.+| +.+++........... +..+|..+...|+-+.+++-+ |+.++++++.........          
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            478899999988 9999983333332222 233499999999877776665 599999998765443311          


Q ss_pred             ----cCCCCCeeEEE--EcCCCCEEEEEECCCcEEEEeCCCC-----eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCc
Q 006220          502 ----AGHLSDVDCVR--WHINCNYIATGSSDKTVRLWDVSSG-----ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (656)
Q Consensus       502 ----~~~~~~V~~v~--~~p~~~~l~tgs~dg~V~iwd~~~~-----~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~  570 (656)
                          ......+..++  -.+.+...++....+.|.+|.....     ...+.+. -...+.+++|.  ++.|+.|..++ 
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-  158 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-  158 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-
Confidence                11223344444  1133444444445568888877653     3455554 34778899998  66777777554 


Q ss_pred             EEEEeCCCCeee
Q 006220          571 IMMWDLASGRCV  582 (656)
Q Consensus       571 I~iwD~~~~~~~  582 (656)
                      ..+.|+.++...
T Consensus       159 f~~idl~~~~~~  170 (275)
T PF00780_consen  159 FYLIDLNTGSPS  170 (275)
T ss_pred             eEEEecCCCCce
Confidence            778899876543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.19  E-value=0.36  Score=54.58  Aligned_cols=190  Identities=18%  Similarity=0.212  Sum_probs=99.6

Q ss_pred             EEEEccCCCEEEEEeCC------CeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEEECCCc-----EEEEEC
Q 006220          426 SASFSPLGDFILSSSAD------TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDRT-----ARIWSM  492 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~D------g~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~-----i~lwd~  492 (656)
                      +++.. ++...++|+.|      .++..||..+++-..  .+....... +++. -+|...++||.||.     +-.||.
T Consensus       327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp  403 (571)
T KOG4441|consen  327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDP  403 (571)
T ss_pred             cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecC
Confidence            34444 35677788888      356778877655222  111111111 1111 16888899998864     666776


Q ss_pred             CCCceeEEecCCCCCeeEEEE-cCCCCEEEEEECCC------cEEEEeCCCCeeEEE--EecCCCCeEEEEEcCCCCEEE
Q 006220          493 DRIQPLRIMAGHLSDVDCVRW-HINCNYIATGSSDK------TVRLWDVSSGECVRI--FIGHRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~-~p~~~~l~tgs~dg------~V~iwd~~~~~~~~~--~~~h~~~i~~l~~sp~g~~L~  563 (656)
                      .+.+--..-. ......+... .-+|...++|+.++      +|..||..++.....  +..-........  -++...+
T Consensus       404 ~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYv  480 (571)
T KOG4441|consen  404 VTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYV  480 (571)
T ss_pred             CCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEE
Confidence            6543221111 1111111111 23677777777553      577888877654322  111111122222  2477778


Q ss_pred             EEECCCc-----EEEEeCCCCee--eEeeeCCCccEEEEEEcCCCCEEEEEECCC-----cEEEEeCCCCCc
Q 006220          564 SGDEDGT-----IMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADC-----TVKLWDVTTSTK  623 (656)
Q Consensus       564 s~~~dg~-----I~iwD~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg-----~I~iWd~~~~~~  623 (656)
                      .||.|+.     |..||..+.+-  +..+......+....+  ++...+.|+.||     +|..||..+.+-
T Consensus       481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             ECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCce
Confidence            8887763     77788766543  3223333333323332  577888888876     477777666543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.18  E-value=1.7  Score=43.96  Aligned_cols=202  Identities=16%  Similarity=0.230  Sum_probs=119.3

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEecc------CC-ceeEEeeC-----CCccEEEEEEecCC------------CEEE
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTK------LN-ANLVCYKG-----HNYPVWDVQFNPQG------------HYFA  479 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~------~~-~~~~~~~~-----h~~~V~~l~~sp~~------------~~l~  479 (656)
                      -+.|+++|.+.+-++....+...+||..      .. ..+..+..     .....+.+.|+...            ..|+
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4689999999888888888899999986      12 22333332     12346677777432            2378


Q ss_pred             EEECCCcEEEEECCCCc-----eeEEec-CCCCCe-eEEEEcC--CCCEEEEEE-CCCcEEEEeCCCCeeEEE---EecC
Q 006220          480 SSSHDRTARIWSMDRIQ-----PLRIMA-GHLSDV-DCVRWHI--NCNYIATGS-SDKTVRLWDVSSGECVRI---FIGH  546 (656)
Q Consensus       480 sgs~Dg~i~lwd~~~~~-----~~~~~~-~~~~~V-~~v~~~p--~~~~l~tgs-~dg~V~iwd~~~~~~~~~---~~~h  546 (656)
                      .++.||+|.-|...-..     ....+. .....| ..+++..  .+++|+.+. ..++|.+||-.- ..+..   |...
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~~~~~~g~F~DP  183 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-RPPPLPGSFIDP  183 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-ccccCCCCccCC
Confidence            88999999999853211     112222 111222 3455543  356665543 678999998542 22211   1111


Q ss_pred             C-----CC-----------eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC--CCccEEEEEEcC------CCC
Q 006220          547 R-----SM-----------ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HTSCVWTLAYSC------EGS  602 (656)
Q Consensus       547 ~-----~~-----------i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~--h~~~V~~l~~s~------~~~  602 (656)
                      .     .+           |+-..-.++++.=+.|..-|.|-+||+ .|+.+.++..  .-...|.|+..|      .+.
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~  262 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence            0     00           111111112222222334478999997 6888887742  235668888766      467


Q ss_pred             EEEEEECCCcEEEEeCCCCCceeec
Q 006220          603 LLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       603 ~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      +|+---.||+|..+|..++..+-.+
T Consensus       263 lLVGNFGDG~InaFD~~sG~~~g~L  287 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQSGAQLGQL  287 (336)
T ss_pred             eEEeecCCceeEEecCCCCceeeee
Confidence            7887778999999999988765444

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.08  E-value=1.2  Score=44.31  Aligned_cols=184  Identities=14%  Similarity=0.178  Sum_probs=103.4

Q ss_pred             EEccCCCEEEEEeCC-----CeEEEEeccCC-ceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEE--------ECC
Q 006220          428 SFSPLGDFILSSSAD-----TTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW--------SMD  493 (656)
Q Consensus       428 ~~spd~~~L~s~s~D-----g~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lw--------d~~  493 (656)
                      .|||||.+|...-.|     |.|-|||.+.+ ..+..+..|.-.-..+.|.+||+.++.+.  |-|..-        +++
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld  197 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD  197 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh
Confidence            599999998876544     78999998743 44567778887888999999999988874  223322        233


Q ss_pred             CCceeEEe--------------c--CCCCCeeEEEEcCCCCEEEEEECCCc-----EEEEeCCCCeeEEEEe-------c
Q 006220          494 RIQPLRIM--------------A--GHLSDVDCVRWHINCNYIATGSSDKT-----VRLWDVSSGECVRIFI-------G  545 (656)
Q Consensus       494 ~~~~~~~~--------------~--~~~~~V~~v~~~p~~~~l~tgs~dg~-----V~iwd~~~~~~~~~~~-------~  545 (656)
                      +.+|...+              .  .+.-.|..++..++|..++.+-..|.     --+=-...++.+..+.       .
T Consensus       198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~  277 (366)
T COG3490         198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA  277 (366)
T ss_pred             hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence            33332211              1  12334556666666554433221110     0000111222222221       1


Q ss_pred             CCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          546 HRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       546 h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      ....|-+|+.+-+..+++..+ ..+...+||..+|..+..-.-..  +..++-  ...-++..+.+|.|.+++
T Consensus       278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d--aaGva~--~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD--AAGVAA--AKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc--ccccee--ccCceEEecCCceEEecc
Confidence            223566777776555555544 55678899999998775532211  122222  233466666788888774

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.07  E-value=2.1  Score=44.04  Aligned_cols=240  Identities=15%  Similarity=0.120  Sum_probs=111.4

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE-ee-cCccCEE
Q 006220          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQ-GHSGPVY  425 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~-~h~~~V~  425 (656)
                      ......+..|.|..+..-+|+| ..+.|  +.....+..                        ...... .. .-.-..+
T Consensus        13 l~t~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~t------------------------W~~~~~~~~~~~~~~l~   65 (302)
T PF14870_consen   13 LPTDKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGKT------------------------WQPVSLDLDNPFDYHLN   65 (302)
T ss_dssp             -S-SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTSS-------------------------EE-----S-----EEE
T ss_pred             cCCCCceEEEEEecCCEEEEEe-cCCEE--EEECCCCcc------------------------ccccccCCCccceeeEE
Confidence            3445679999999767777777 45543  333321110                        000000 00 0012356


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee---CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee-EEe
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-RIM  501 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~-~~~  501 (656)
                      +|.|..+ ..+++ +..+ +.+...+.+..-..+.   .-......+....++. ...++..|.|+ ...+.++.- ...
T Consensus        66 ~I~f~~~-~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy-~T~DgG~tW~~~~  140 (302)
T PF14870_consen   66 SISFDGN-EGWIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIY-RTTDGGKTWQAVV  140 (302)
T ss_dssp             EEEEETT-EEEEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EE-EESSTTSSEEEEE
T ss_pred             EEEecCC-ceEEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEE-EeCCCCCCeeEcc
Confidence            7777643 33444 4445 4455555454433322   1122233444444443 33344445433 223334332 233


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC-CCCe
Q 006220          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL-ASGR  580 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~-~~~~  580 (656)
                      ....+.+..+..+++|.++++++......-||--...-...-..-...|..|.|+|++.+.+.+ ..|.|++=+. ....
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence            4555778888889999999998776667788754322222233345789999999998766654 7888888772 2222


Q ss_pred             eeEe----eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          581 CVTP----LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       581 ~~~~----~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ....    .....-.+..++|.+++...++|+ .|++ +...+.++
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk  263 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK  263 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred             ccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc
Confidence            2111    112223588999999887777665 4444 34444444

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.06  E-value=1.5  Score=42.40  Aligned_cols=134  Identities=13%  Similarity=0.232  Sum_probs=85.6

Q ss_pred             ccEEEEEEecCCCEEEEEECC---------CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEE-EEECCCcEEEEe
Q 006220          464 YPVWDVQFNPQGHYFASSSHD---------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIA-TGSSDKTVRLWD  533 (656)
Q Consensus       464 ~~V~~l~~sp~~~~l~sgs~D---------g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~-tgs~dg~V~iwd  533 (656)
                      ....+-..+|+|++++-.-.|         |.++.|-...  .+..+.....--+.++|+.+.+.++ +-+.+-+|.-||
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            345667788999985433322         4455554322  2222222233346788887766554 455667787777


Q ss_pred             --CCCCeeE-----EEEec---CCC-CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcC
Q 006220          534 --VSSGECV-----RIFIG---HRS-MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC  599 (656)
Q Consensus       534 --~~~~~~~-----~~~~~---h~~-~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~  599 (656)
                        ..+|...     ..+..   ... .--.+++..+|++.+++-..|+|...|..+|+.+.++.-....|+|++|--
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence              5565432     12211   011 122355566888888988999999999999999999998899999999954

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.02  E-value=0.59  Score=47.04  Aligned_cols=145  Identities=21%  Similarity=0.205  Sum_probs=90.2

Q ss_pred             cEEEEEEecCCCEEEEEE---CCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEe-CCCCeeE
Q 006220          465 PVWDVQFNPQGHYFASSS---HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD-VSSGECV  540 (656)
Q Consensus       465 ~V~~l~~sp~~~~l~sgs---~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd-~~~~~~~  540 (656)
                      .+.+.++++++..++...   ....++++...  ....... ....+..-.|++++...+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            678899999999877766   33445555443  3333321 223678889999987777767677777773 3333322


Q ss_pred             EE-E-ec-CCCCeEEEEEcCCCCEEEEEE---CCCcEEEEeCC---CC--e----eeEeeeCCCccEEEEEEcCCCCEEE
Q 006220          541 RI-F-IG-HRSMILSLAMSPDGRYMASGD---EDGTIMMWDLA---SG--R----CVTPLMGHTSCVWTLAYSCEGSLLA  605 (656)
Q Consensus       541 ~~-~-~~-h~~~i~~l~~sp~g~~L~s~~---~dg~I~iwD~~---~~--~----~~~~~~~h~~~V~~l~~s~~~~~l~  605 (656)
                      .. . .. -.+.|+.+.+||||..++...   .++.|.+=-+.   .+  .    .+.........+.+++|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            21 1 11 112899999999999877655   35677766442   22  1    1111112346789999999998877


Q ss_pred             EEECCCc
Q 006220          606 SGSADCT  612 (656)
Q Consensus       606 sgs~Dg~  612 (656)
                      .+...+.
T Consensus       182 ~~~~~~~  188 (253)
T PF10647_consen  182 LGRSAGG  188 (253)
T ss_pred             EeCCCCC
Confidence            7665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA02713 hypothetical protein; Provisional

Probab=96.01  E-value=0.16  Score=57.47  Aligned_cols=147  Identities=3%  Similarity=-0.142  Sum_probs=75.3

Q ss_pred             CCCEEEEEeCCC-----eEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEEECCC-------------------
Q 006220          432 LGDFILSSSADT-----TIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDR-------------------  485 (656)
Q Consensus       432 d~~~L~s~s~Dg-----~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sgs~Dg-------------------  485 (656)
                      +|...+.||.++     ++..||..+.+-..  .+.........+.  -+|...+.||.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence            466667777653     47888877543221  1111111111122  2577777787653                   


Q ss_pred             ----cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC------CcEEEEeCCC-Cee--EEEEecCCCCeEE
Q 006220          486 ----TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD------KTVRLWDVSS-GEC--VRIFIGHRSMILS  552 (656)
Q Consensus       486 ----~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d------g~V~iwd~~~-~~~--~~~~~~h~~~i~~  552 (656)
                          ++..||..+.+-...-.-......+....-++...+.|+.+      ..|..||..+ .+-  +..+.........
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~  508 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT  508 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence                46677776654322111111111111112256666667654      2467899887 332  2333222222222


Q ss_pred             EEEcCCCCEEEEEECCC--cEEEEeCCCCeee
Q 006220          553 LAMSPDGRYMASGDEDG--TIMMWDLASGRCV  582 (656)
Q Consensus       553 l~~sp~g~~L~s~~~dg--~I~iwD~~~~~~~  582 (656)
                      +.+  +|+..++||.+|  .+..||..+.+--
T Consensus       509 ~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        509 ILH--DNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             EEE--CCEEEEEeeecceeehhhcCccccccc
Confidence            333  578888898888  6777777665543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.99  E-value=0.58  Score=46.53  Aligned_cols=144  Identities=14%  Similarity=0.190  Sum_probs=95.3

Q ss_pred             EEEEEEecC-CCEEEEEECCCc-EEEEECCCCceeEEecCCCCC--eeEEEEcCCCCEEEEEECC-----CcEEEEeCCC
Q 006220          466 VWDVQFNPQ-GHYFASSSHDRT-ARIWSMDRIQPLRIMAGHLSD--VDCVRWHINCNYIATGSSD-----KTVRLWDVSS  536 (656)
Q Consensus       466 V~~l~~sp~-~~~l~sgs~Dg~-i~lwd~~~~~~~~~~~~~~~~--V~~v~~~p~~~~l~tgs~d-----g~V~iwd~~~  536 (656)
                      ..+|.++|. ..-++.+-.-|+ ..++|....+....+....+.  .-.-.|||+|.+|++.-.|     |.|-+||.+.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            345777774 444666666665 467888776554443311111  1123689999999886443     7899999985


Q ss_pred             C-eeEEEEecCCCCeEEEEEcCCCCEEEEEEC------------------CCcEEEEeCCCCeeeEeee----CCCccEE
Q 006220          537 G-ECVRIFIGHRSMILSLAMSPDGRYMASGDE------------------DGTIMMWDLASGRCVTPLM----GHTSCVW  593 (656)
Q Consensus       537 ~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~------------------dg~I~iwD~~~~~~~~~~~----~h~~~V~  593 (656)
                      + +.+..+.+|.-.-..+.+.+||+.|+.+..                  .-++.+.|..+|..+.+..    .+.-.|.
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR  229 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR  229 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence            4 556678888878889999999999887642                  1235555666666654432    2445788


Q ss_pred             EEEEcCCCCEEEEEEC
Q 006220          594 TLAYSCEGSLLASGSA  609 (656)
Q Consensus       594 ~l~~s~~~~~l~sgs~  609 (656)
                      .++..+||++++.+-.
T Consensus       230 Hld~g~dgtvwfgcQy  245 (366)
T COG3490         230 HLDIGRDGTVWFGCQY  245 (366)
T ss_pred             eeeeCCCCcEEEEEEe
Confidence            8898888887766543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.95  E-value=1.2  Score=47.78  Aligned_cols=83  Identities=18%  Similarity=0.271  Sum_probs=59.2

Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC-eEEEEEcCC-----------------CCEEE-E
Q 006220          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPD-----------------GRYMA-S  564 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~-i~~l~~sp~-----------------g~~L~-s  564 (656)
                      ....+.+++.+|++++.++...=|.|.++|+.++..++.++|.... +.-+.....                 ..+|+ -
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            3345788999999999998888899999999999999998876542 111111111                 11222 3


Q ss_pred             EECCCcEEEEeCCCCeeeEeee
Q 006220          565 GDEDGTIMMWDLASGRCVTPLM  586 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~~~~~~~~  586 (656)
                      +-.-|.|.||.+++|..+..+.
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEE
Confidence            5567899999999998877664

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.94  E-value=2.3  Score=49.27  Aligned_cols=183  Identities=9%  Similarity=0.145  Sum_probs=109.6

Q ss_pred             EEEEEeCCCeEEEEeccCCce--eEEeeCCCccEEEEEEecCCCEEEEEEC-----------C---CcEEEEECCCCcee
Q 006220          435 FILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSSH-----------D---RTARIWSMDRIQPL  498 (656)
Q Consensus       435 ~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs~-----------D---g~i~lwd~~~~~~~  498 (656)
                      .|+++.. +.+++.-++.-+.  +.+..- ..+...+++.+....+.+.+.           .   ..++++|-.+.+.+
T Consensus       686 ~l~~~~~-~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl  763 (1096)
T KOG1897|consen  686 SLASANG-GALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL  763 (1096)
T ss_pred             eEEEecC-CceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence            4555554 4577766654332  223222 234456677664444444432           1   13555555544333


Q ss_pred             EEecC----CCCCeeEEEEcCC-CCEEEEEE----------CCCcEEEEeCCCCeeEEEEecC--CCCeEEEEEcCCCCE
Q 006220          499 RIMAG----HLSDVDCVRWHIN-CNYIATGS----------SDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRY  561 (656)
Q Consensus       499 ~~~~~----~~~~V~~v~~~p~-~~~l~tgs----------~dg~V~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g~~  561 (656)
                      ....-    ....+.++.|+.+ +.++++|+          ..|.|.+|....++.+.....+  .+.+.++..- +|++
T Consensus       764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkl  842 (1096)
T KOG1897|consen  764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKL  842 (1096)
T ss_pred             eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeE
Confidence            32221    1123555668766 67788775          3477777777664444433322  2444444322 5777


Q ss_pred             EEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       562 L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ||+-+  ..|++|++.+.+.+..-..|..++..+...-.|..++.|..-++|.+-..+..+
T Consensus       843 lA~In--~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  843 LAGIN--QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE  901 (1096)
T ss_pred             EEecC--cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence            77554  589999999987777777888899999999999999999988887776665544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.94  E-value=0.6  Score=46.76  Aligned_cols=193  Identities=16%  Similarity=0.167  Sum_probs=122.8

Q ss_pred             EEEccCCC-EEEEEeCCCeEEEEeccCCcee--EEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-
Q 006220          427 ASFSPLGD-FILSSSADTTIRLWSTKLNANL--VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-  502 (656)
Q Consensus       427 l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~--~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-  502 (656)
                      .+|-+.+. +...++..  ..+|...-...+  .-+.+-...+.++.|+|+.+.+++........+|=...++.++.+. 
T Consensus        48 ~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL  125 (316)
T COG3204          48 CAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL  125 (316)
T ss_pred             eEEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc
Confidence            33433333 34444444  555554322221  1123445569999999999999988888888888888888888876 


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe---------cC-CCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI---------GH-RSMILSLAMSPDGRYMASGDEDGTIM  572 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~---------~h-~~~i~~l~~sp~g~~L~s~~~dg~I~  572 (656)
                      ....+...+.|..++++.++--.++.+.++.+..+..+..+.         .+ ....-.++|.|..+.|..+-+-.=+.
T Consensus       126 ~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~  205 (316)
T COG3204         126 TGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIG  205 (316)
T ss_pred             cccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcE
Confidence            234567788888888888888888999888776553222111         12 34567899999998888888877777


Q ss_pred             EEeCCCCee---eEeeeCCC-------ccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCC
Q 006220          573 MWDLASGRC---VTPLMGHT-------SCVWTLAYSCE-GSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       573 iwD~~~~~~---~~~~~~h~-------~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      ||.+..+..   +.....++       ..|.++.|++. +.+|+-+..++.+.-.|....
T Consensus       206 I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         206 IFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             EEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            777653221   11111111       24667778764 455666666666666665443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.76  E-value=0.11  Score=60.31  Aligned_cols=143  Identities=13%  Similarity=0.011  Sum_probs=92.2

Q ss_pred             cCEEEEEEccCCCEEE--EEeCCCeEEEEeccCCceeE-----EeeC------CCccEEEEEEecCC-CEEEEEECCCcE
Q 006220          422 GPVYSASFSPLGDFIL--SSSADTTIRLWSTKLNANLV-----CYKG------HNYPVWDVQFNPQG-HYFASSSHDRTA  487 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~--s~s~Dg~I~lwd~~~~~~~~-----~~~~------h~~~V~~l~~sp~~-~~l~sgs~Dg~i  487 (656)
                      -++..+..++|+...+  ..+.+-.|..||+++...-.     -+..      ......++.|+|.- ..++++..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            4555566666765433  33444478889987543211     1111      12335678899853 346777889999


Q ss_pred             EEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec----CCCCeEEEEEcCCCCEEE
Q 006220          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----HRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~----h~~~i~~l~~sp~g~~L~  563 (656)
                      ++..+....+...--.-...++|++|+|.|..+++|-..|++.-|-.. ++..+.+.+    ....|.||+|-....+++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            998876443332222345678999999999999999999999888753 333333322    136799999987777776


Q ss_pred             EE
Q 006220          564 SG  565 (656)
Q Consensus       564 s~  565 (656)
                      +-
T Consensus       260 vy  261 (1405)
T KOG3630|consen  260 VY  261 (1405)
T ss_pred             Ee
Confidence            53

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.75  E-value=1.8  Score=44.46  Aligned_cols=153  Identities=16%  Similarity=0.170  Sum_probs=80.8

Q ss_pred             eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC-CCCe
Q 006220          460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV-SSGE  538 (656)
Q Consensus       460 ~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~-~~~~  538 (656)
                      ..-...+..+.-+++|.++++++......-||--...-...-......|..+.|.|++...+++ ..|.|+.=+. ....
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence            3445678889999999999888776666678765432232333456789999999998766654 8888888772 2222


Q ss_pred             eEEE-Ee---cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee---CCCccEEEEEEcCCCCEEEEEECCC
Q 006220          539 CVRI-FI---GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADC  611 (656)
Q Consensus       539 ~~~~-~~---~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~sgs~Dg  611 (656)
                      .... +.   ...-.+..++|.+++...++|+ .|.+ +.....|+.-....   .-...++.+.|....+-+ ..+.+|
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~lG~~G  296 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VLGQDG  296 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE-STT
T ss_pred             ccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE-EECCCc
Confidence            1111 11   1122478999999877777665 4544 34555666554443   223568889997654444 455677


Q ss_pred             cEEEE
Q 006220          612 TVKLW  616 (656)
Q Consensus       612 ~I~iW  616 (656)
                      .|--|
T Consensus       297 ~ll~~  301 (302)
T PF14870_consen  297 VLLRY  301 (302)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.74  E-value=0.0039  Score=69.77  Aligned_cols=199  Identities=16%  Similarity=0.188  Sum_probs=117.9

Q ss_pred             EeecCccCEEEEEEccCC-CEEEEEeCCCeEEEEeccC--Cce-----eEEeeCCCccEEEEEEec---CCCEEEEEECC
Q 006220          416 LYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKL--NAN-----LVCYKGHNYPVWDVQFNP---QGHYFASSSHD  484 (656)
Q Consensus       416 ~l~~h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~--~~~-----~~~~~~h~~~V~~l~~sp---~~~~l~sgs~D  484 (656)
                      ...|.+|.|-.+.|-... ..+.  -.-|...||+++-  |+.     +.....-..++.-+.|.|   +..++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            355667778777775322 1222  2336788998762  222     122222334455666666   56778888889


Q ss_pred             CcEEEEECCCCceeEEecCCCCCeeEEE-----------EcCCCCEEEEEECCCcEEEEeCC-----CCeeEEEEecCC-
Q 006220          485 RTARIWSMDRIQPLRIMAGHLSDVDCVR-----------WHINCNYIATGSSDKTVRLWDVS-----SGECVRIFIGHR-  547 (656)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~-----------~~p~~~~l~tgs~dg~V~iwd~~-----~~~~~~~~~~h~-  547 (656)
                      +++++...++... ..+.+|...+..++           .+|||..+++++.||.++.|.+.     .-.|+..+..|. 
T Consensus       205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~  283 (1283)
T KOG1916|consen  205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK  283 (1283)
T ss_pred             CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence            9999887765432 44455766554433           58999999999999999988764     334566677776 


Q ss_pred             CCeEEEEEcCC-------C--CEEEEEE-CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC------------EEE
Q 006220          548 SMILSLAMSPD-------G--RYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS------------LLA  605 (656)
Q Consensus       548 ~~i~~l~~sp~-------g--~~L~s~~-~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~------------~l~  605 (656)
                      ++-.|.-|..+       |  .++++++ ....+++|.....+|+-.+  --..|..+. -+++.            .++
T Consensus       284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~--~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v  360 (1283)
T KOG1916|consen  284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDK--LIDGVQIVG-PHDGEVTDLSMCQWMTTRLV  360 (1283)
T ss_pred             CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhh--cccceEeec-CCCccccchhhhHHHHHHHH
Confidence            44444444432       2  2344443 4556999998888877221  122233333 22222            244


Q ss_pred             EEECCCcEEEEeCCC
Q 006220          606 SGSADCTVKLWDVTT  620 (656)
Q Consensus       606 sgs~Dg~I~iWd~~~  620 (656)
                      +-+.+++|.+|.-..
T Consensus       361 ~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  361 SRSVDGTIKIWQNRK  375 (1283)
T ss_pred             HhhhHHHHHHhhcch
Confidence            566778888886443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.73  E-value=0.9  Score=49.64  Aligned_cols=148  Identities=15%  Similarity=0.222  Sum_probs=90.1

Q ss_pred             cCEEEEEEccCCCEEE-EEe--CCCeEEEEeccCCceeEEeeCCCccEEEEEEecC----CCEEEEEECCCcEEEEECC-
Q 006220          422 GPVYSASFSPLGDFIL-SSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ----GHYFASSSHDRTARIWSMD-  493 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~-s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~----~~~l~sgs~Dg~i~lwd~~-  493 (656)
                      .||.+++|. ||+.++ +.-  .+|.+++=|.   ..    -|.-..|.++.|.|-    ...++...+...|.+|-+. 
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~v----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KV----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc---cE----eeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            578999997 565443 332  2333332221   11    233446889999994    3356666678899999874 


Q ss_pred             ----CCceeEEecCCC---CC--eeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220          494 ----RIQPLRIMAGHL---SD--VDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       494 ----~~~~~~~~~~~~---~~--V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~L~  563 (656)
                          +.+.+.....+-   -+  -..+.|||....|++-+....-.+++++.. ..+..=....+-|.|.+|.+||+.|+
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence                223222221111   11  246789999999888766655556676533 33332234568899999999998776


Q ss_pred             EE-ECCCcEEEEeCC
Q 006220          564 SG-DEDGTIMMWDLA  577 (656)
Q Consensus       564 s~-~~dg~I~iwD~~  577 (656)
                      ++ +..=.-+|||-.
T Consensus       172 VAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  172 VAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEeCCeEEEEEecCc
Confidence            65 444467789853

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.70  E-value=2.4  Score=44.74  Aligned_cols=195  Identities=16%  Similarity=0.167  Sum_probs=97.7

Q ss_pred             EEccCCCEEEEEe-CCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220          428 SFSPLGDFILSSS-ADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (656)
Q Consensus       428 ~~spd~~~L~s~s-~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  504 (656)
                      +|.++|+.|+.++ .||  .+.+.|+.+++..+...+-.....+..++|+++.++-......++-.|+++.+...++...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            5778897665444 455  4666677777665544433333446778898888877767788999999998776666666


Q ss_pred             CCCeeEEEEc--CCCCEEEEEE----------------------CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCC
Q 006220          505 LSDVDCVRWH--INCNYIATGS----------------------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR  560 (656)
Q Consensus       505 ~~~V~~v~~~--p~~~~l~tgs----------------------~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~  560 (656)
                      ...+....|.  .++..++..-                      -...|.-.|+.+|+....+. ....+..+.|||...
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP  200 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence            5556555664  4555544321                      11345556788877655554 456788899999654


Q ss_pred             E-EEEEEC---CCc-EEEEeCC-CCeeeEeeeCCC--ccEEEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCCc
Q 006220          561 Y-MASGDE---DGT-IMMWDLA-SGRCVTPLMGHT--SCVWTLAYSCEGSLLASGS-----ADCTVKLWDVTTSTK  623 (656)
Q Consensus       561 ~-L~s~~~---dg~-I~iwD~~-~~~~~~~~~~h~--~~V~~l~~s~~~~~l~sgs-----~Dg~I~iWd~~~~~~  623 (656)
                      . |+-|-+   +.. -+||=++ .|.....+..|.  ..+..=-|.|||..|.--+     .+..|.-.|+.++..
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~  276 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER  276 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence            4 444432   211 2445443 233333333332  3344556888887654422     233566667766654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.67  E-value=2.3  Score=42.70  Aligned_cols=145  Identities=16%  Similarity=0.136  Sum_probs=89.7

Q ss_pred             CEEEEEEccCCCEEEEEe---CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEE-CCCCc--
Q 006220          423 PVYSASFSPLGDFILSSS---ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS-MDRIQ--  496 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s---~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd-~~~~~--  496 (656)
                      .+.+.++++++..++...   ....+.++...  ....... ....+..-.|++++...+....+...+++. ...+.  
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            678899999999776655   33345555443  3332221 222677788999987777766666667774 22222  


Q ss_pred             eeEEecCCC-CCeeEEEEcCCCCEEEEEE---CCCcEEEEeCC---CC------eeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220          497 PLRIMAGHL-SDVDCVRWHINCNYIATGS---SDKTVRLWDVS---SG------ECVRIFIGHRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       497 ~~~~~~~~~-~~V~~v~~~p~~~~l~tgs---~dg~V~iwd~~---~~------~~~~~~~~h~~~i~~l~~sp~g~~L~  563 (656)
                      ++..-.... ..|..+.++|+|..++...   .++.|.+--+.   .+      ............++.+.|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            222211212 2899999999999887755   35677776543   22      11222223346789999999998877


Q ss_pred             EEECCCc
Q 006220          564 SGDEDGT  570 (656)
Q Consensus       564 s~~~dg~  570 (656)
                      .+...+.
T Consensus       182 ~~~~~~~  188 (253)
T PF10647_consen  182 LGRSAGG  188 (253)
T ss_pred             EeCCCCC
Confidence            7654443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.59  E-value=0.036  Score=39.64  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMA  381 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~  381 (656)
                      ...|.+++|||...+||.|+.+|.|.|+.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999985

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.52  E-value=2  Score=49.75  Aligned_cols=93  Identities=17%  Similarity=0.214  Sum_probs=57.9

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccC-CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~  500 (656)
                      -.|..|.++|+|.+|+..|..| |.|-.+.. +.....+.+....|.|-.+.-+..++                      
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~----------------------  141 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF----------------------  141 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc----------------------
Confidence            4688999999999999888865 55554432 22222233333334333332222111                      


Q ss_pred             ecCCCCCeeEEEEcCC---CCEEEEEECCCcEEEEeCCCC
Q 006220          501 MAGHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSG  537 (656)
Q Consensus       501 ~~~~~~~V~~v~~~p~---~~~l~tgs~dg~V~iwd~~~~  537 (656)
                      ...+...|..+.|||.   +.+|++-++|+++|+||+...
T Consensus       142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            1123456888899985   578889899999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.39  E-value=0.48  Score=51.69  Aligned_cols=148  Identities=11%  Similarity=0.219  Sum_probs=89.8

Q ss_pred             ccEEEEEEecCCCEEEEEE---CCCcEEEEECCCCceeEEecCCCCCeeEEEEcCC----CCEEEEEECCCcEEEEeCCC
Q 006220          464 YPVWDVQFNPQGHYFASSS---HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN----CNYIATGSSDKTVRLWDVSS  536 (656)
Q Consensus       464 ~~V~~l~~sp~~~~l~sgs---~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~----~~~l~tgs~dg~V~iwd~~~  536 (656)
                      .|+.+++|. ||+.++-..   .+|.+++=|.   +.+    |....|..+.|.|-    ...+++.-....|.+|.+..
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            488999998 565544332   3444433321   122    34456899999984    33566666788999998852


Q ss_pred             -----CeeEEEEecC-CC--C--eEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCCCCEEE
Q 006220          537 -----GECVRIFIGH-RS--M--ILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLA  605 (656)
Q Consensus       537 -----~~~~~~~~~h-~~--~--i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~  605 (656)
                           ++.+..-..+ ..  +  -..+.|+|....|++-.....-.+++++.. ..++.-....+.|.|.+|.+||+.|+
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence                 2222221111 11  1  134679999888888766555556666543 23332235568899999999999877


Q ss_pred             EEECC-CcEEEEeCC
Q 006220          606 SGSAD-CTVKLWDVT  619 (656)
Q Consensus       606 sgs~D-g~I~iWd~~  619 (656)
                      .+-.. =.-+|||-.
T Consensus       172 VAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  172 VAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEeCCeEEEEEecCc
Confidence            66433 346788743

>PHA02790 Kelch-like protein; Provisional

Probab=95.37  E-value=0.7  Score=51.27  Aligned_cols=179  Identities=8%  Similarity=-0.025  Sum_probs=85.4

Q ss_pred             CCEEEEEeCC-----CeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECC--CcEEEEECCCCceeEE--e
Q 006220          433 GDFILSSSAD-----TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD--RTARIWSMDRIQPLRI--M  501 (656)
Q Consensus       433 ~~~L~s~s~D-----g~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D--g~i~lwd~~~~~~~~~--~  501 (656)
                      +..++.|+.+     .++..||..++.....  +....... +++ .-++...+.||.+  .++..||..+.+-...  +
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            4445566543     2466777765443221  11111111 122 2367777888754  3577788765432211  1


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCeeEEEE--ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          502 AGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg---~V~iwd~~~~~~~~~~--~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      .........+.  -+|...+.|+.++   .+..||.++..-...-  ....... ++ ..-+|+..+.|   |.+.+||.
T Consensus       350 ~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G---G~~e~ydp  422 (480)
T PHA02790        350 LKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG---RNAEFYCE  422 (480)
T ss_pred             CCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC---CceEEecC
Confidence            11111111222  3566667777553   4778888765433211  1011111 22 22345555555   35778888


Q ss_pred             CCCee--eEeeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCC
Q 006220          577 ASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTST  622 (656)
Q Consensus       577 ~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~  622 (656)
                      .+++-  +..+.........+.  -+|++.+.||.+     .+|.+||..+.+
T Consensus       423 ~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        423 SSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            76543  222222122222222  367788888754     346677766543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.25  E-value=7.4  Score=45.29  Aligned_cols=173  Identities=12%  Similarity=0.173  Sum_probs=113.5

Q ss_pred             eEEEEeccCCceeEEeeCC----CccEEEEEEecC-CCEEEEEEC----------CCcEEEEECCCCceeEEecCCC--C
Q 006220          444 TIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQ-GHYFASSSH----------DRTARIWSMDRIQPLRIMAGHL--S  506 (656)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~-~~~l~sgs~----------Dg~i~lwd~~~~~~~~~~~~~~--~  506 (656)
                      .++++|-++.+.+...+-.    ...|.++.|..+ +.++++|..          .|.|.++.+...+.+.....+.  +
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G  830 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG  830 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence            4677776666555433321    123555568777 777888762          4778888877655555444332  2


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--eeEe
Q 006220          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR--CVTP  584 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~--~~~~  584 (656)
                      .|.++.- -+|+++|.  -+..|++|+..+++.++.-..|..++..+...-.|..+++|..-+++.+...+..+  ....
T Consensus       831 av~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev  907 (1096)
T KOG1897|consen  831 AVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV  907 (1096)
T ss_pred             ceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence            3333321 26666654  45689999999998888888889999999999999999999988887776554433  3322


Q ss_pred             ee-CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          585 LM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       585 ~~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      -+ .+....+++.+- ++..++.+..+|.+.+-...+
T Consensus       908 ArD~~p~Wmtaveil-~~d~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  908 ARDYNPNWMTAVEIL-DDDTYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             ehhhCccceeeEEEe-cCceEEeecccccEEEEEecC
Confidence            22 344566666664 344566677888888877664

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.23  E-value=0.055  Score=38.70  Aligned_cols=35  Identities=23%  Similarity=0.442  Sum_probs=30.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       547 ~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      ...|.+++|+|...+||.|+.+|.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            357999999999999999999999999998 55543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.22  E-value=1.7  Score=48.88  Aligned_cols=172  Identities=13%  Similarity=0.180  Sum_probs=88.5

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe----eCCCccEEEEEEecCCCEEEEEECCCcEEEEE-CCCCc
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWS-MDRIQ  496 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~----~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd-~~~~~  496 (656)
                      +++..+.|+.+ ..|+....+|++++|++. |..+..+    ......|..+.+..+|-.+++  .+|.+.+-+ .... 
T Consensus        84 ~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~-  158 (829)
T KOG2280|consen   84 GELIGMGWSDD-EELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEP-  158 (829)
T ss_pred             CCeeeecccCC-ceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcc-
Confidence            47889999965 557777899999999986 3332221    223334555556556643333  345554433 3221 


Q ss_pred             eeEEecC-CCCCeeEEEEc--CCCC-EEEEEECCCc--EEEEeCC--CCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220          497 PLRIMAG-HLSDVDCVRWH--INCN-YIATGSSDKT--VRLWDVS--SGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       497 ~~~~~~~-~~~~V~~v~~~--p~~~-~l~tgs~dg~--V~iwd~~--~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      ..+.+.. ..+...+.+|.  +++. ....-..+-.  ..++-..  +.+... +....+.+..+..||++++|+--..+
T Consensus       159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~-~~~~~~~~~ki~VS~n~~~laLyt~~  237 (829)
T KOG2280|consen  159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA-LSWPNSSVVKISVSPNRRFLALYTET  237 (829)
T ss_pred             hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccc-cCCCCceEEEEEEcCCcceEEEEecC
Confidence            1222221 11112222232  2211 1111111100  0111111  112111 22223567889999999999999999


Q ss_pred             CcEEEEeCCCCeeeEeee--CCCccEEEEEEcCC
Q 006220          569 GTIMMWDLASGRCVTPLM--GHTSCVWTLAYSCE  600 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~--~h~~~V~~l~~s~~  600 (656)
                      |.|.+-+....+++..+.  .|. +...++|..+
T Consensus       238 G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn  270 (829)
T KOG2280|consen  238 GKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN  270 (829)
T ss_pred             CcEEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence            999999888777766654  232 2225555443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.19  E-value=0.68  Score=49.42  Aligned_cols=142  Identities=18%  Similarity=0.226  Sum_probs=79.9

Q ss_pred             EEEEEEecCCCEEEEEE-----------CCC-cEEEEECCC--Cc--eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcE
Q 006220          466 VWDVQFNPQGHYFASSS-----------HDR-TARIWSMDR--IQ--PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV  529 (656)
Q Consensus       466 V~~l~~sp~~~~l~sgs-----------~Dg-~i~lwd~~~--~~--~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V  529 (656)
                      ...|+|.++|+.+++-.           ..+ .|.+++-.+  ++  ....+.........+++.+++  |++++.....
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~   93 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDIL   93 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEE
Confidence            44788888888776643           223 676665432  22  234555445567889999988  4444444433


Q ss_pred             EEEeCCC-----CeeEEE---Eec----CCCCeEEEEEcCCCCEEEEEECC-------------------CcEEEEeCCC
Q 006220          530 RLWDVSS-----GECVRI---FIG----HRSMILSLAMSPDGRYMASGDED-------------------GTIMMWDLAS  578 (656)
Q Consensus       530 ~iwd~~~-----~~~~~~---~~~----h~~~i~~l~~sp~g~~L~s~~~d-------------------g~I~iwD~~~  578 (656)
                      ++.|...     ++....   +..    +......++|.|||.+.++.+..                   |.|.-+|...
T Consensus        94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg  173 (367)
T TIGR02604        94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG  173 (367)
T ss_pred             EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence            4445432     122111   222    12447789999999876654421                   3455555544


Q ss_pred             CeeeEeeeCCCccEEEEEEcCCCCEEEEEECC
Q 006220          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD  610 (656)
Q Consensus       579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D  610 (656)
                      ++....-.++ ...+.++|+++|+++++-..+
T Consensus       174 ~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       174 GKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence            4322212233 345789999999987765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.12  E-value=0.23  Score=57.68  Aligned_cols=144  Identities=13%  Similarity=0.083  Sum_probs=91.7

Q ss_pred             CccEEEEEEecCCCEEEEE--ECCCcEEEEECCCCceeE-----Ee------cCCCCCeeEEEEcCCCC-EEEEEECCCc
Q 006220          463 NYPVWDVQFNPQGHYFASS--SHDRTARIWSMDRIQPLR-----IM------AGHLSDVDCVRWHINCN-YIATGSSDKT  528 (656)
Q Consensus       463 ~~~V~~l~~sp~~~~l~sg--s~Dg~i~lwd~~~~~~~~-----~~------~~~~~~V~~v~~~p~~~-~l~tgs~dg~  528 (656)
                      ..+|..+...+|+...++.  +.+-.|..||++....-+     .+      ........++.|+|.-. ..++...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            3456666667776554443  344478899987532211     11      12223467889998543 3456678999


Q ss_pred             EEEEeCCCCee-EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC----CCccEEEEEEcCCCCE
Q 006220          529 VRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG----HTSCVWTLAYSCEGSL  603 (656)
Q Consensus       529 V~iwd~~~~~~-~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~----h~~~V~~l~~s~~~~~  603 (656)
                      |++..+..... +..+ .-....+|++|+|.|+.++.|...|++.-|.. +++....+.+    ....|.+++|-....+
T Consensus       180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeE
Confidence            99887653322 2222 23456899999999999999999999999874 4443333332    1367999999776666


Q ss_pred             EEEEE
Q 006220          604 LASGS  608 (656)
Q Consensus       604 l~sgs  608 (656)
                      +++-+
T Consensus       258 lvvy~  262 (1405)
T KOG3630|consen  258 LVVYG  262 (1405)
T ss_pred             EEEec
Confidence            65543

>PHA03098 kelch-like protein; Provisional

Probab=95.12  E-value=0.71  Score=52.01  Aligned_cols=142  Identities=10%  Similarity=0.035  Sum_probs=67.4

Q ss_pred             CCCEEEEEeCC-----CeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECC------CcEEEEECCCCcee
Q 006220          432 LGDFILSSSAD-----TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQPL  498 (656)
Q Consensus       432 d~~~L~s~s~D-----g~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D------g~i~lwd~~~~~~~  498 (656)
                      ++..++.|+.+     ..+..||..+++-...  +...... .+++ .-++..++.||.+      ..+..||..+.+-.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            46666677654     3467788765432211  1111111 1122 2256677777732      35788888764332


Q ss_pred             EEec--CCCCCeeEEEEcCCCCEEEEEECC--------CcEEEEeCCCCeeEEEE--ecCCCCeEEEEEcCCCCEEEEEE
Q 006220          499 RIMA--GHLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       499 ~~~~--~~~~~V~~v~~~p~~~~l~tgs~d--------g~V~iwd~~~~~~~~~~--~~h~~~i~~l~~sp~g~~L~s~~  566 (656)
                      ..-.  ...... +++ ..++..++.|+.+        ..+.+||..+++-...-  .........+.+  +++.++.||
T Consensus       420 ~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG  495 (534)
T PHA03098        420 KGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGG  495 (534)
T ss_pred             ecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcC
Confidence            2111  111111 222 2345566666543        23888998876543321  111111112222  566666666


Q ss_pred             CC-----CcEEEEeCCCC
Q 006220          567 ED-----GTIMMWDLASG  579 (656)
Q Consensus       567 ~d-----g~I~iwD~~~~  579 (656)
                      .+     +.|.+||..+.
T Consensus       496 ~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        496 DKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CcCCcccceeEEEeCCCC
Confidence            44     35677776554

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.11  E-value=0.63  Score=52.59  Aligned_cols=186  Identities=15%  Similarity=0.156  Sum_probs=97.2

Q ss_pred             CCEEEEEeCC------CeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECC------CcEEEEECCCCceeE
Q 006220          433 GDFILSSSAD------TTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQPLR  499 (656)
Q Consensus       433 ~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~D------g~i~lwd~~~~~~~~  499 (656)
                      +..++.|+.+      ..+..+|..++.-.....- ....-.+++.. ++..+++||.|      .++..||..+.+-..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            3445555555      3577888776633222111 12223344444 56788899988      356677777665322


Q ss_pred             Ee--cCCCCCeeEEEEcCCCCEEEEEECCC-----cEEEEeCCCCeeEEEEecCCCCeEE-EEEcCCCCEEEEEECCC--
Q 006220          500 IM--AGHLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSGECVRIFIGHRSMILS-LAMSPDGRYMASGDEDG--  569 (656)
Q Consensus       500 ~~--~~~~~~V~~v~~~p~~~~l~tgs~dg-----~V~iwd~~~~~~~~~~~~h~~~i~~-l~~sp~g~~L~s~~~dg--  569 (656)
                      .-  ...........  -+|...++|+.||     +|..||..+.+--..-. +...... -...-+|...++||.++  
T Consensus       364 ~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             cCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCc
Confidence            11  11111111111  2677788898886     47778877654322111 1111111 12223577778887554  


Q ss_pred             ----cEEEEeCCCCee--eEeeeCCCccEEEEEEcCCCCEEEEEECCCc-----EEEEeCCCCCce
Q 006220          570 ----TIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADCT-----VKLWDVTTSTKV  624 (656)
Q Consensus       570 ----~I~iwD~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----I~iWd~~~~~~~  624 (656)
                          ++..||..+++.  +..+..-..... + -.-++.+.+.||.|+.     |..+|..+.+-.
T Consensus       441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~  504 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWT  504 (571)
T ss_pred             cccceEEEEcCCCCceeecCCcccccccce-E-EEECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence                467888766542  333322111111 2 2235778888887763     667777765543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.01  E-value=1.3  Score=42.97  Aligned_cols=132  Identities=11%  Similarity=0.055  Sum_probs=82.2

Q ss_pred             EEEEEEccCCCEEEEEeCC---------CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEE-EEECCCcEEEEE--
Q 006220          424 VYSASFSPLGDFILSSSAD---------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWS--  491 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~D---------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-sgs~Dg~i~lwd--  491 (656)
                      ...-..+|+|+++.-.-.|         |.++.|-..  ..+..+...-.--..++|+.+...|. +-+.+-+|.-||  
T Consensus       111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd  188 (310)
T KOG4499|consen  111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD  188 (310)
T ss_pred             cccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence            3444567888874432222         344445432  22222222223334678887766654 445677887787  


Q ss_pred             CCCCc-----eeEEecC----CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcC
Q 006220          492 MDRIQ-----PLRIMAG----HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP  557 (656)
Q Consensus       492 ~~~~~-----~~~~~~~----~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp  557 (656)
                      ..++.     .+..+..    .......++...+|+..++.-..++|...|..+|+.+..+.-....|+|++|--
T Consensus       189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            33332     2222221    111233455567888888888999999999999999999998899999999973

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.88  E-value=0.21  Score=51.14  Aligned_cols=149  Identities=17%  Similarity=0.196  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHHhcCccHHHHHHHHHHhcCCCCCCCCCCCCC-CchhhcccccccccccCChhhHHHHHHHHHHHHhcc
Q 006220            3 ELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDIL-NDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSS   81 (656)
Q Consensus         3 ~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s   81 (656)
                      ...++++|.+||-+.||..|-..|-+++...+-    .+..+. .--.|.+.|.            .+.+.-.-.|+...
T Consensus       115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledl----vD~Dv~~~~~~I~~sll------------~~~l~~~Lswc~eh  178 (389)
T KOG0396|consen  115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDL----VDSDVYKRAYGIRDSLL------------AGELEPALSWCKEH  178 (389)
T ss_pred             HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhh----HhHHHHHHHHHHHHHHH------------hcchHHHHHHHHHH
Confidence            356899999999999999999999988876432    111000 0001222221            12245567788776


Q ss_pred             ccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcCC-ChhhhccCHHHHHhhcCceEE
Q 006220           82 LDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVL-SPSHLEEMEFAHSLRHSKVNI  160 (656)
Q Consensus        82 ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~k~~v  160 (656)
                      =-..|.+=+.|=|-+=..=|++||.-+...+|.+|++||=.-+...|.+||+.+.+.. -+..-         -..||..
T Consensus       179 k~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t---------~~sky~~  249 (389)
T KOG0396|consen  179 KVELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYT---------SSSKYLN  249 (389)
T ss_pred             HHHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcccc---------CcccccC
Confidence            5555555567778888899999999999999999999999999889999999866543 22211         1345777


Q ss_pred             EEchhhHHHHHH-HHhh
Q 006220          161 KICQYSYELLLQ-YLHK  176 (656)
Q Consensus       161 ~~~~~~~~~l~~-~l~~  176 (656)
                      -++..-|+.|-. |+++
T Consensus       250 l~~~~rw~~l~~lF~s~  266 (389)
T KOG0396|consen  250 LLTADRWSVLADLFLSE  266 (389)
T ss_pred             cccHHHHHHHHHHhhHH
Confidence            777777776652 4443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.87  E-value=6.1  Score=46.17  Aligned_cols=153  Identities=11%  Similarity=0.133  Sum_probs=95.0

Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccE-------------EEEEEec--CCCEEEEEEC----------CCc
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV-------------WDVQFNP--QGHYFASSSH----------DRT  486 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V-------------~~l~~sp--~~~~l~sgs~----------Dg~  486 (656)
                      .+..++.++.|+.+.-.|.++++.+..+.. .+.|             ..+.-.|  .+..+++|+.          +|.
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~  337 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV  337 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence            345788888999999999999988866532 1111             0111122  2445666643          688


Q ss_pred             EEEEECCCCceeEEecCC---------C--------CCe-eEEEEcCCCCEEEEEE------------------CCCcEE
Q 006220          487 ARIWSMDRIQPLRIMAGH---------L--------SDV-DCVRWHINCNYIATGS------------------SDKTVR  530 (656)
Q Consensus       487 i~lwd~~~~~~~~~~~~~---------~--------~~V-~~v~~~p~~~~l~tgs------------------~dg~V~  530 (656)
                      |+-+|.++++.+-.+..-         .        ..+ ...++.+....++.+.                  ..+.|.
T Consensus       338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv  417 (764)
T TIGR03074       338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV  417 (764)
T ss_pred             EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence            999999999877655310         0        011 2344555544544432                  124566


Q ss_pred             EEeCCCCeeEEEEecCCCC---------eEEEEEcC-CCC---EEEEEECCCcEEEEeCCCCeeeEee
Q 006220          531 LWDVSSGECVRIFIGHRSM---------ILSLAMSP-DGR---YMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       531 iwd~~~~~~~~~~~~h~~~---------i~~l~~sp-~g~---~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      -.|.++|+....++.....         ..-+.+.. +|+   .++.++.+|.+.++|.++|+.+...
T Consensus       418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            6788899888777642211         11122333 563   7889999999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.80  E-value=0.027  Score=63.32  Aligned_cols=179  Identities=19%  Similarity=0.220  Sum_probs=106.8

Q ss_pred             CeEEEEeccCCce-eEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCC--Cc-----eeEEecCCCCCeeEEEE
Q 006220          443 TTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDR--IQ-----PLRIMAGHLSDVDCVRW  513 (656)
Q Consensus       443 g~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~--~~-----~~~~~~~~~~~V~~v~~  513 (656)
                      +.|++-+..+.-. -...++..+.|-.+.|-. +...+.  -.-|.+.+|+++-  ++     .+.......+++.-|.|
T Consensus       111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~w  188 (1283)
T KOG1916|consen  111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSW  188 (1283)
T ss_pred             hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeee
Confidence            4577766543221 123455666777777743 111111  2336788998763  22     12233344455666777


Q ss_pred             cC---CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEE-----------EcCCCCEEEEEECCCcEEEEeCC--
Q 006220          514 HI---NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA-----------MSPDGRYMASGDEDGTIMMWDLA--  577 (656)
Q Consensus       514 ~p---~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~-----------~sp~g~~L~s~~~dg~I~iwD~~--  577 (656)
                      +|   +.-++..+-.++.|++....+... ..|.+|..+++.++           .||||..++.+..||.+++|.+-  
T Consensus       189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~  267 (1283)
T KOG1916|consen  189 CPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT  267 (1283)
T ss_pred             cccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee
Confidence            65   677888888899999877654332 34556766655543           68999999999999998888763  


Q ss_pred             ---CCeeeEeeeCCC-ccEEEEEEcCCC---------CEEEEEE-CCCcEEEEeCCCCCce
Q 006220          578 ---SGRCVTPLMGHT-SCVWTLAYSCEG---------SLLASGS-ADCTVKLWDVTTSTKV  624 (656)
Q Consensus       578 ---~~~~~~~~~~h~-~~V~~l~~s~~~---------~~l~sgs-~Dg~I~iWd~~~~~~~  624 (656)
                         .-+|++.++.|. ++-.|.-|+.+.         .++++++ ....+++|....-++.
T Consensus       268 g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  268 GKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence               335666777777 332222233221         2345544 3456889987766554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.71  E-value=6.7  Score=41.94  Aligned_cols=193  Identities=11%  Similarity=0.099  Sum_probs=93.9

Q ss_pred             CCCEEEEEe-CCCeEEEEeccCCc----eeEEeeC---C----CccEEEEEEecCCCEEEEEE------CCCcEEEEECC
Q 006220          432 LGDFILSSS-ADTTIRLWSTKLNA----NLVCYKG---H----NYPVWDVQFNPQGHYFASSS------HDRTARIWSMD  493 (656)
Q Consensus       432 d~~~L~s~s-~Dg~I~lwd~~~~~----~~~~~~~---h----~~~V~~l~~sp~~~~l~sgs------~Dg~i~lwd~~  493 (656)
                      +.++|+..+ ..+.|.|.|+.+.-    ..+.+..   +    -..-..+..-|+|..++++-      .-|-+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345666666 67889999987432    2233321   1    01223344556888888763      22567788887


Q ss_pred             CCceeEEecCCC---CCeeEEEEcCCCCEEEEEE--------------------CCCcEEEEeCCCCeeEEEEecCC--C
Q 006220          494 RIQPLRIMAGHL---SDVDCVRWHINCNYIATGS--------------------SDKTVRLWDVSSGECVRIFIGHR--S  548 (656)
Q Consensus       494 ~~~~~~~~~~~~---~~V~~v~~~p~~~~l~tgs--------------------~dg~V~iwd~~~~~~~~~~~~h~--~  548 (656)
                      +...........   .--..+-|+|..+.++++.                    ...++.+||..+.+.++++.--.  .
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            776666554322   2245677889888888863                    24689999999999998886432  2


Q ss_pred             CeEEEEEcCC--CCE-EEEEECCCcEEEEeC-CCCe----eeEeeeC-----------------CCccEEEEEEcCCCCE
Q 006220          549 MILSLAMSPD--GRY-MASGDEDGTIMMWDL-ASGR----CVTPLMG-----------------HTSCVWTLAYSCEGSL  603 (656)
Q Consensus       549 ~i~~l~~sp~--g~~-L~s~~~dg~I~iwD~-~~~~----~~~~~~~-----------------h~~~V~~l~~s~~~~~  603 (656)
                      ....|.|..+  ..+ ++.+....+|..|-- ..++    .+..+..                 -..-|+.|..|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            3456777654  333 333334444554432 3332    2222211                 0245789999999998


Q ss_pred             EEEEE-CCCcEEEEeCCCCCce
Q 006220          604 LASGS-ADCTVKLWDVTTSTKV  624 (656)
Q Consensus       604 l~sgs-~Dg~I~iWd~~~~~~~  624 (656)
                      |..++ .+|.|+.||+......
T Consensus       326 LYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-
T ss_pred             EEEEcccCCcEEEEecCCCCCC
Confidence            87666 6899999999876543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=94.67  E-value=3.1  Score=43.68  Aligned_cols=149  Identities=15%  Similarity=0.103  Sum_probs=87.2

Q ss_pred             CccEEEEEEecCCCEEEEEECCCcEEE-EECCCCc-eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeE
Q 006220          463 NYPVWDVQFNPQGHYFASSSHDRTARI-WSMDRIQ-PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV  540 (656)
Q Consensus       463 ~~~V~~l~~sp~~~~l~sgs~Dg~i~l-wd~~~~~-~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~  540 (656)
                      ...+.++.+.|++.+++++. .|.+.. ++ +.++ -..........+.++.+.++++.+++| ..|.+++=....|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            45688999999887665554 465443 22 2222 222223445678999999998877765 4576654333444332


Q ss_pred             EEEec----CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC---CCccEEEEEEcCCCCEEEEEECCCcE
Q 006220          541 RIFIG----HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---HTSCVWTLAYSCEGSLLASGSADCTV  613 (656)
Q Consensus       541 ~~~~~----h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~---h~~~V~~l~~s~~~~~l~sgs~Dg~I  613 (656)
                      .....    ....+..+.+.|++..++++ .+|.|. .....|+.-.....   -....+.+.|..+++.++ .+..|.|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i  325 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL  325 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence            22111    12357889999987765554 567554 44455554443322   223577888876666555 5567888


Q ss_pred             EEEe
Q 006220          614 KLWD  617 (656)
Q Consensus       614 ~iWd  617 (656)
                      --|+
T Consensus       326 l~~~  329 (334)
T PRK13684        326 LRYV  329 (334)
T ss_pred             EEec
Confidence            7665

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.60  E-value=1.8  Score=49.20  Aligned_cols=174  Identities=14%  Similarity=0.115  Sum_probs=98.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      -.+.++|+.=   ..+++++ ..+.|.||+...........  +..............+... ... ...|  .|+.+..
T Consensus        39 fKNNLtalsq---~n~LFiA-~~s~I~Vy~~d~l~~~p~~~--p~~~~~t~p~~~~~~D~~~-s~~-p~PH--tIN~i~v  108 (717)
T PF08728_consen   39 FKNNLTALSQ---RNLLFIA-YQSEIYVYDPDGLTQLPSRK--PCLRFDTKPEFTSTPDRLI-STW-PFPH--TINFIKV  108 (717)
T ss_pred             cccceeEEec---CCEEEEE-ECCEEEEEecCCcccccccc--cccccccCccccccccccc-cCC-CCCc--eeeEEEe
Confidence            3445555542   6778777 57899999987643321100  0000000000000000000 000 1223  3444444


Q ss_pred             cc--CCCEEEEEeCCCeEEEEeccC-------C----c---------eeEEeeCCCccEEEEEEe--cCCCEEEEEECCC
Q 006220          430 SP--LGDFILSSSADTTIRLWSTKL-------N----A---------NLVCYKGHNYPVWDVQFN--PQGHYFASSSHDR  485 (656)
Q Consensus       430 sp--d~~~L~s~s~Dg~I~lwd~~~-------~----~---------~~~~~~~h~~~V~~l~~s--p~~~~l~sgs~Dg  485 (656)
                      ..  ....|+.|..||.|.+|.+++       .    .         +...+. ....+|+++++  ...+++|+++...
T Consensus       109 ~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~  187 (717)
T PF08728_consen  109 GDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQ  187 (717)
T ss_pred             cccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCc
Confidence            33  446899999999999997531       0    0         111222 24579999999  7888899998888


Q ss_pred             cEEEEECCCC--c-eeEEecCCCCCeeEEEEcCCC---C---EEEEEECCCcEEEEeC
Q 006220          486 TARIWSMDRI--Q-PLRIMAGHLSDVDCVRWHINC---N---YIATGSSDKTVRLWDV  534 (656)
Q Consensus       486 ~i~lwd~~~~--~-~~~~~~~~~~~V~~v~~~p~~---~---~l~tgs~dg~V~iwd~  534 (656)
                      .|.||-....  + ....-..+...|-+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888765431  1 111111355678899997643   2   7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.47  E-value=1  Score=50.70  Aligned_cols=113  Identities=16%  Similarity=0.169  Sum_probs=75.2

Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEc--CCCCEEEEEECCCcEEEEeCC-----
Q 006220          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMS--PDGRYMASGDEDGTIMMWDLA-----  577 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~s--p~g~~L~s~~~dg~I~iwD~~-----  577 (656)
                      ....-+.-+.-++.-++.+....+.|||.+.+.....-. ...+.|..+.|.  |+|+.+++.|-.+.|.++--.     
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344444445544444455555689999999887543322 346789999986  588999988889999998531     


Q ss_pred             ----CCeeeEee--eCCC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          578 ----SGRCVTPL--MGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       578 ----~~~~~~~~--~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                          +...+..+  ..|+ .+|.+..|.++|.+++.+  ++.+.|+|-.-
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~~  157 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKWL  157 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCCc
Confidence                12333333  3455 689999999999766654  34678877533

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=94.14  E-value=0.11  Score=50.14  Aligned_cols=169  Identities=14%  Similarity=0.215  Sum_probs=104.8

Q ss_pred             chHHHHHHHHHHHHhcCccHHHHHHHHHHhcCCCCCCCCCCCCCCch-hhcccccccccccCChhhHHHHHHHHHHHHhc
Q 006220            2 DELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDP-ELSKFFRTFSESEDGPARYQDEYSKLRSWTYS   80 (656)
Q Consensus         2 ~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   80 (656)
                      ..+|+|++|++||---||..+-+.|..|+....+...+..   +.+- .|...|     .   -.+...|..++.+---.
T Consensus        25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~---~~eR~~Ir~~I-----~---~G~Ie~Aie~in~l~Pe   93 (228)
T KOG2659|consen   25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDS---MDERLQIRRAI-----E---EGQIEEAIEKVNQLNPE   93 (228)
T ss_pred             chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhh---HhHHHHHHHHH-----H---hccHHHHHHHHHHhChH
Confidence            5689999999999999999999999999887653111100   0000 111111     1   11344555555543322


Q ss_pred             cccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhH---HhhHHHHHHHhcCCChhhhccCHHHHHhhcCc
Q 006220           81 SLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHE---MMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSK  157 (656)
Q Consensus        81 sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k  157 (656)
                      -||.-+    .|.|=+-..-+++||..|..++|-.|+..--.-+.   ..+.+++++.-.+---+.-+..|.+. +.+..
T Consensus        94 iLd~n~----~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s  168 (228)
T KOG2659|consen   94 ILDTNR----ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQS  168 (228)
T ss_pred             HHccch----hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHH
Confidence            233222    26777778889999999999999999988655542   13566666633332222334444444 55666


Q ss_pred             eEEEEchhhHHHHHHHHhhCCcchHhHhh
Q 006220          158 VNIKICQYSYELLLQYLHKTQSTKMLGII  186 (656)
Q Consensus       158 ~~v~~~~~~~~~l~~~l~~~~~~~~~~i~  186 (656)
                      |+-++....-.-++.+.+......|..|+
T Consensus       169 ~R~kvA~~vN~aiL~~~~~~~~~~l~~ll  197 (228)
T KOG2659|consen  169 LRQKVASEVNSAILASQEHESEPKLPFLL  197 (228)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence            77777777777777777766555666665

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.09  E-value=1.9  Score=41.07  Aligned_cols=172  Identities=16%  Similarity=0.127  Sum_probs=98.8

Q ss_pred             CCCEEEEEeC--CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEecCCCCCe
Q 006220          432 LGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAGHLSDV  508 (656)
Q Consensus       432 d~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~~~~~V  508 (656)
                      +|.++.+.+.  ...|++||+.+++.+...+-....+..=-...-|.+|..-. .+|....+|.++.+.+..+.- .+.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence            4455666554  34699999999887765443211222111111244443333 688999999998887766652 2333


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe--cCCCCe---EEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMI---LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (656)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~--~h~~~i---~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~  583 (656)
                      ..++  .++..|+.++...+++.-|..+.....+..  ....+|   +-+.|- +|...|-.-.+..|...|..+|+.+.
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence            3333  355567777666778887776644333222  112232   233343 56555555556666667777777665


Q ss_pred             eee------------CCCccEEEEEEcCCC-CEEEEE
Q 006220          584 PLM------------GHTSCVWTLAYSCEG-SLLASG  607 (656)
Q Consensus       584 ~~~------------~h~~~V~~l~~s~~~-~~l~sg  607 (656)
                      .+.            .|..-.+.+++.|++ +++++|
T Consensus       211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            442            244567789998877 455555

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.07  E-value=10  Score=40.88  Aligned_cols=147  Identities=12%  Similarity=0.129  Sum_probs=81.4

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc----CC-CEE
Q 006220          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP----LG-DFI  436 (656)
Q Consensus       362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp----d~-~~L  436 (656)
                      +...+++|+..|.++||+-......                        .........-..||..+..-.    .. ..|
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~------------------------~~~lllE~~l~~PILqv~~G~F~s~~~~~~L   91 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQ------------------------PEDLLLETQLKDPILQVECGKFVSGSEDLQL   91 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCC------------------------CccEEEEEecCCcEEEEEeccccCCCCcceE
Confidence            4568999999999999996431110                        001111222345666665432    11 223


Q ss_pred             EEEeCCCeEEEEeccCC--c-------eeEEeeCC--CccEEEEEEecC-----CCEEEEEECCCcEEEEECCCCceeEE
Q 006220          437 LSSSADTTIRLWSTKLN--A-------NLVCYKGH--NYPVWDVQFNPQ-----GHYFASSSHDRTARIWSMDRIQPLRI  500 (656)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~--~-------~~~~~~~h--~~~V~~l~~sp~-----~~~l~sgs~Dg~i~lwd~~~~~~~~~  500 (656)
                      +. =.-..+.+|.+...  .       .+.....|  ....+.+++.|-     ..++.+-+-||.+.+++-+...-.+.
T Consensus        92 aV-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~  170 (418)
T PF14727_consen   92 AV-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRF  170 (418)
T ss_pred             EE-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEE
Confidence            33 33355666665211  1       11111222  233445555552     35788889999999999876544444


Q ss_pred             ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV  534 (656)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~  534 (656)
                      +.+ .--...+.|.+....+++++.+..+.-|..
T Consensus       171 lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  171 LPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             cCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            443 233445667777777777777666666643

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.76  E-value=2.7  Score=45.12  Aligned_cols=143  Identities=13%  Similarity=0.128  Sum_probs=89.7

Q ss_pred             cCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCC-------CEEEEEECCCcEEEEECCCCc-eeEEe
Q 006220          431 PLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-------HYFASSSHDRTARIWSMDRIQ-PLRIM  501 (656)
Q Consensus       431 pd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~-------~~l~sgs~Dg~i~lwd~~~~~-~~~~~  501 (656)
                      .+..++ ..|+.-..++-.|+..|+.+.....|..-  -+.|.|..       ..-++|-.+..|.-.|.+-.. .+...
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            344444 35555566777888888888888877654  47777742       123344455666656654322 22111


Q ss_pred             c----CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          502 A----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (656)
Q Consensus       502 ~----~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~  577 (656)
                      .    .......|..- ..+.|+|+||..|-||+||.-.-.....+.+-...|..|..+.+|+++++.+. ..+.+-|++
T Consensus       555 esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         555 ESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             eehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            1    11122223222 34569999999999999996544444455666778999999999998887664 567777764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.73  E-value=1.9  Score=48.67  Aligned_cols=109  Identities=12%  Similarity=0.060  Sum_probs=72.5

Q ss_pred             EEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-CCCCCeeEEEEc--CCCCEEEEEECCCcEEEEeCC-----C-
Q 006220          466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWH--INCNYIATGSSDKTVRLWDVS-----S-  536 (656)
Q Consensus       466 V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-~~~~~V~~v~~~--p~~~~l~tgs~dg~V~iwd~~-----~-  536 (656)
                      ..-+.-+.-+..-++-+...++.|||.+.+.....-. ...+.|..+.|.  |+++.+++.+-.+.|.+|--.     + 
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            3344444444444444455689999998876433222 346789999997  789999988889999998542     1 


Q ss_pred             ---CeeEEEE--ecCC-CCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          537 ---GECVRIF--IGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       537 ---~~~~~~~--~~h~-~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                         ...++.+  ..|+ .+|.+..|.++|.+++.+|  +.+.|+|-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence               1233322  3344 6899999999997776554  57888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02790 Kelch-like protein; Provisional

Probab=93.73  E-value=3  Score=46.26  Aligned_cols=139  Identities=12%  Similarity=0.019  Sum_probs=65.1

Q ss_pred             CCCEEEEEeCC--CeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEEECCC---cEEEEECCCCceeEEecC-
Q 006220          432 LGDFILSSSAD--TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDR---TARIWSMDRIQPLRIMAG-  503 (656)
Q Consensus       432 d~~~L~s~s~D--g~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sgs~Dg---~i~lwd~~~~~~~~~~~~-  503 (656)
                      ++...+.|+.+  .++..||..+++-..  .+....... +++ .-+|...+.||.++   ++..||.++.+-...-.. 
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~  395 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY  395 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence            46666666653  357778865443211  111111111 122 22677778887653   466788765433221110 


Q ss_pred             -CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEE--EecCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEe
Q 006220          504 -HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSPDGRYMASGDED-----GTIMMWD  575 (656)
Q Consensus       504 -~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~--~~~h~~~i~~l~~sp~g~~L~s~~~d-----g~I~iwD  575 (656)
                       .......+  .-++...+.|   |.+.+||..+++-...  +.........+.  -+|+..+.||.+     ..|..||
T Consensus       396 ~~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd  468 (480)
T PHA02790        396 YPHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYN  468 (480)
T ss_pred             CccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEE
Confidence             11111122  2345555555   4577899876644322  111111222222  256777777654     2355555


Q ss_pred             CCCC
Q 006220          576 LASG  579 (656)
Q Consensus       576 ~~~~  579 (656)
                      ..++
T Consensus       469 ~~~~  472 (480)
T PHA02790        469 NRTY  472 (480)
T ss_pred             CCCC
Confidence            5443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.58  E-value=1.4  Score=50.87  Aligned_cols=94  Identities=14%  Similarity=0.233  Sum_probs=57.8

Q ss_pred             CccEEEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEE
Q 006220          463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR  541 (656)
Q Consensus       463 ~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~  541 (656)
                      ...|..|.++|+|.+++..|..| |.|..+.. ...-..+.+....|.|-.+.-+..++ .                   
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~-------------------  142 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-T-------------------  142 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc-c-------------------
Confidence            34688899999999999988755 44444322 11112233333334433332211111 1                   


Q ss_pred             EEecCCCCeEEEEEcCC---CCEEEEEECCCcEEEEeCCCC
Q 006220          542 IFIGHRSMILSLAMSPD---GRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       542 ~~~~h~~~i~~l~~sp~---g~~L~s~~~dg~I~iwD~~~~  579 (656)
                        ..+...|..+.|+|.   +..|+.-+.|+++++||+...
T Consensus       143 --~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  143 --SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             --CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence              123456888999996   579999999999999999653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.46  E-value=2.5  Score=44.75  Aligned_cols=120  Identities=12%  Similarity=0.145  Sum_probs=81.9

Q ss_pred             cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee----EEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC
Q 006220          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL----VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~----~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~  494 (656)
                      ...|+|.++.||+|++.+++--.+++|.+++....+..    ...+..+..|.+.+|+.+ .-+|..+..| +-+|.+..
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence            34579999999999999999999999999997533322    222334556899999865 4455555444 56665543


Q ss_pred             -CceeEEecCCCCCeeEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeeE
Q 006220          495 -IQPLRIMAGHLSDVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECV  540 (656)
Q Consensus       495 -~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs--~dg~V~iwd~~~~~~~  540 (656)
                       ...++....|.-.|+...|+++.+.++.++  ..+++.=+-++++...
T Consensus       142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~  190 (657)
T KOG2377|consen  142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMS  190 (657)
T ss_pred             hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceee
Confidence             345666778888999999999887665443  3444444555554433

>PRK13684 Ycf48-like protein; Provisional

Probab=93.33  E-value=12  Score=39.27  Aligned_cols=112  Identities=18%  Similarity=0.192  Sum_probs=65.0

Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEE-EeCCCCe-eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220          505 LSDVDCVRWHINCNYIATGSSDKTVRL-WDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~V~i-wd~~~~~-~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      ...+.++.+.|++.++++|. .|.+.. +|- .++ -......-...++++.+.++++.++++ ..|.+.+=....|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            45688999999987776664 454432 221 222 222222334678999999999877665 4576653233444332


Q ss_pred             EeeeC----CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          583 TPLMG----HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       583 ~~~~~----h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      .....    ....+.++.+.+++..++ ++.+|.|. .....+
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G  289 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGG  289 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCC
Confidence            22221    124578899998877555 45567554 344433

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.31  E-value=1.9  Score=46.19  Aligned_cols=143  Identities=16%  Similarity=0.192  Sum_probs=92.0

Q ss_pred             CCCEE-EEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCC-------EEEEEECCCcEEEEeCCC-CeeEEEEe
Q 006220          474 QGHYF-ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-------YIATGSSDKTVRLWDVSS-GECVRIFI  544 (656)
Q Consensus       474 ~~~~l-~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~-------~l~tgs~dg~V~iwd~~~-~~~~~~~~  544 (656)
                      +.+++ ..|+....++-.|++.++.+.....|.. | .|.|.|...       .-++|-++..|.-.|.+- |..+....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            44443 4455667788889999999988887754 3 677777432       234455666666667663 33322221


Q ss_pred             cCCCCeEEEEEcC----CCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          545 GHRSMILSLAMSP----DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       545 ~h~~~i~~l~~sp----~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                       ....++.-.||.    ...++|+|+..|-|++||.-.-+.-..+.+....|..+..+.+|.++++.|. ..+.+-|+.-
T Consensus       556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i  633 (776)
T COG5167         556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI  633 (776)
T ss_pred             -ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence             122233333333    3469999999999999995333333345566788999999999998877664 4677777653

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.00  E-value=6.9  Score=37.75  Aligned_cols=138  Identities=14%  Similarity=0.250  Sum_probs=80.8

Q ss_pred             CEEEEEeCCCeEEEEeccCC--ceeEEeeCCCccEEEEEEecCCCEEEEEECC---C---cEEEE---ECC--CCceeE-
Q 006220          434 DFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHD---R---TARIW---SMD--RIQPLR-  499 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D---g---~i~lw---d~~--~~~~~~-  499 (656)
                      +.|+.+...+.|.+|++...  .....+.. -+.|..+.++..|+|++|-=.+   .   .+|+|   ...  ..++++ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            45555466678999998833  33445553 4789999999999999996422   2   56665   221  223332 


Q ss_pred             EecC---------------------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EE-----EEe----cC-C
Q 006220          500 IMAG---------------------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VR-----IFI----GH-R  547 (656)
Q Consensus       500 ~~~~---------------------~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~-----~~~----~h-~  547 (656)
                      .+.|                     -...+.|++..|...-|+.|+ ++++.+|.+..+.. ..     .|.    .| .
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~  186 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID  186 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence            1112                     134577888888655566665 56888998765433 11     111    11 1


Q ss_pred             C-CeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          548 S-MILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       548 ~-~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      + ....+++.  +.|+|..+. -.++++.+
T Consensus       187 ~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl  213 (215)
T PF14761_consen  187 NFKPTQVAIC--EGYIAVMSD-LEVLVLKL  213 (215)
T ss_pred             CceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence            1 23445554  667777764 45666554

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.68  E-value=3.5  Score=49.68  Aligned_cols=72  Identities=19%  Similarity=0.222  Sum_probs=45.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       546 h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      +..++.+..+...+..+ .+..-+.+.+|+.........+....     ..++.++..++++..||.+.+||+..++.
T Consensus       197 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  197 IEYESLQVLYYSPTKIL-IGFNRGLVVIKDRASKYVQSAYLPNG-----QLESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cccccceeeeecCCCcc-eeeeeeeeeehhcccccchhhccccc-----ccCccCCceEEEEEecCCEEeeecCCCce
Confidence            44455555554443333 33445677778765544333332221     11278899999999999999999999865

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.29  E-value=4.8  Score=45.98  Aligned_cols=142  Identities=11%  Similarity=0.126  Sum_probs=90.0

Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeE------Eee----------------CCCccEEEEEEec--CCCEEEEEECCCcEE
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLV------CYK----------------GHNYPVWDVQFNP--QGHYFASSSHDRTAR  488 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~------~~~----------------~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~  488 (656)
                      ..+++.+. .+.|.||+.+.-....      .+.                .....|+-|....  +...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            55666655 5789999876332211      000                0112344444433  456788999999999


Q ss_pred             EEECCCC--------------------ceeEEecCCCCCeeEEEEc--CCCCEEEEEECCCcEEEEeCCCC--eeE-EEE
Q 006220          489 IWSMDRI--------------------QPLRIMAGHLSDVDCVRWH--INCNYIATGSSDKTVRLWDVSSG--ECV-RIF  543 (656)
Q Consensus       489 lwd~~~~--------------------~~~~~~~~~~~~V~~v~~~--p~~~~l~tgs~dg~V~iwd~~~~--~~~-~~~  543 (656)
                      +|.+++.                    +|...+. -...+.++++|  ...++||+++....|.+|-....  +.. ..-
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            9976310                    1222222 23468889998  88889999998888888765432  111 111


Q ss_pred             ecCCCCeEEEEEcCCC---C---EEEEEECCCcEEEEeC
Q 006220          544 IGHRSMILSLAMSPDG---R---YMASGDEDGTIMMWDL  576 (656)
Q Consensus       544 ~~h~~~i~~l~~sp~g---~---~L~s~~~dg~I~iwD~  576 (656)
                      ..|...|.+|+|-++.   .   +|++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            1356678999998743   2   7888999999999988

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.69  E-value=17  Score=35.17  Aligned_cols=137  Identities=15%  Similarity=0.184  Sum_probs=78.6

Q ss_pred             CEEEEEECCCcEEEEECC--CCceeEEecCCCCCeeEEEEcCCCCEEEEEECC------CcEEEE---eCC--CCeeEE-
Q 006220          476 HYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD------KTVRLW---DVS--SGECVR-  541 (656)
Q Consensus       476 ~~l~sgs~Dg~i~lwd~~--~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d------g~V~iw---d~~--~~~~~~-  541 (656)
                      ..++.+...+.|.+|++.  ...+...|. .-+.|..+.++..|+||+|--.+      ..+|+|   ...  ...+++ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            344444666889999988  334455555 44889999999999999995322      256764   322  112222 


Q ss_pred             EEecC---------------------CCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCee-eE-----eee-----CC
Q 006220          542 IFIGH---------------------RSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRC-VT-----PLM-----GH  588 (656)
Q Consensus       542 ~~~~h---------------------~~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~-~~-----~~~-----~h  588 (656)
                      .+.||                     ..++.+++..|- |++++ |+ ++++.+|.+..... ..     .+.     .|
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~  185 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI  185 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence            11221                     335677887774 55554 43 46899998765433 11     111     11


Q ss_pred             C-ccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          589 T-SCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       589 ~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      . -.+..+++.  +.++|..+ +-.+++..+
T Consensus       186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             cCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence            1 224455554  45676665 446666654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=90.66  E-value=20  Score=35.97  Aligned_cols=181  Identities=10%  Similarity=0.048  Sum_probs=108.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          354 LNCASISQDGSLVAGGFSDS--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg--~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.+........                          +. ..----.+... 
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~--------------------------l~-~~~FgEGit~~-   98 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVP--------------------------LP-PRYFGEGITIL-   98 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE---------------------------T-TT--EEEEEEE-
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE--------------------------CC-ccccceeEEEE-
Confidence            56777877888877776655  68999987643211100                          00 00001112222 


Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC-----CC
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH-----LS  506 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~-----~~  506 (656)
                      +++.....-.++...+||..+.+.+..+.- ...-|.++  .++..|+.......++++|..+.+..+.+...     ..
T Consensus        99 ~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~  175 (264)
T PF05096_consen   99 GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS  175 (264)
T ss_dssp             TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred             CCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence            122333334578999999999888877753 45778888  36777777777788999999888777766532     22


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec------------C---CCCeEEEEEcCCCCEEEEEE
Q 006220          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG------------H---RSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~------------h---~~~i~~l~~sp~g~~L~s~~  566 (656)
                      .++-+.|. +|...|-.-....|...|..+|.++..+.-            +   ..-.+.|++.|.++.|...|
T Consensus       176 ~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  176 NLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             -EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            35556665 565555555667888899999998876631            1   24578999998766555544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=90.59  E-value=20  Score=39.69  Aligned_cols=149  Identities=16%  Similarity=0.090  Sum_probs=78.3

Q ss_pred             EEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCC---CeeEEEEcCCCCEEEEEEC-------------CCcEEEE
Q 006220          469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS---DVDCVRWHINCNYIATGSS-------------DKTVRLW  532 (656)
Q Consensus       469 l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~---~V~~v~~~p~~~~l~tgs~-------------dg~V~iw  532 (656)
                      +...++|++++..+  +.++.+|.. ++.+........   .-..+..-|+|++|+.+..             .-.|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            66778888776555  778888875 444444332211   1245667799999988872             2246667


Q ss_pred             eCCCCeeEEEEec--CC-------------------------CCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeeEe
Q 006220          533 DVSSGECVRIFIG--HR-------------------------SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP  584 (656)
Q Consensus       533 d~~~~~~~~~~~~--h~-------------------------~~i~~l~~sp-~g~~L~s~~~dg~I~iwD~~~~~~~~~  584 (656)
                      | .+|+.+..+..  |-                         -.+.++.+.+ ++.+|+|+-.-..|...|.++++....
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence            7 78888776531  10                         1378899988 556666665556888899888887777


Q ss_pred             eeCCCcc-------EEE---------------EEEcCCCCEEEEEECCC---cEEEEeCCCCC
Q 006220          585 LMGHTSC-------VWT---------------LAYSCEGSLLASGSADC---TVKLWDVTTST  622 (656)
Q Consensus       585 ~~~h~~~-------V~~---------------l~~s~~~~~l~sgs~Dg---~I~iWd~~~~~  622 (656)
                      +-.|.+.       +..               ..| .-|++-+.--.+|   .|.++|=....
T Consensus       309 lg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~-~~gQH~~~~~~~g~~~~l~vFDNg~~r  370 (477)
T PF05935_consen  309 LGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDW-FWGQHTAHLIPDGPQGNLLVFDNGNGR  370 (477)
T ss_dssp             ES-STT--TTTGGGB-EEB-TTS-B-EBSSSS-----SS-EEEEE-TTS---SEEEEE--TTG
T ss_pred             eCCCCCCCcccchheeeeeccCCceeeccCCCCcc-cccccceEEcCCCCeEEEEEEECCCCC
Confidence            6544311       000               111 1255666666777   88888865544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.32  E-value=7.9  Score=41.94  Aligned_cols=97  Identities=16%  Similarity=0.141  Sum_probs=62.1

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      -.|+.+..++.|..++-++.+|.+..+=.+.+..-..+......|.|-.++-+. .|++.+                   
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss-------------------  163 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSS-------------------  163 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccC-------------------
Confidence            468889999999999999999866555444444444455444445554444322 222221                   


Q ss_pred             cCCCCCeeEEEEcCCC---CEEEEEECCCcEEEEeCCCCeeE
Q 006220          502 AGHLSDVDCVRWHINC---NYIATGSSDKTVRLWDVSSGECV  540 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~---~~l~tgs~dg~V~iwd~~~~~~~  540 (656)
                        ..-.+..++|||++   ..|..-++|.+||+||......+
T Consensus       164 --~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  164 --TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             --CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence              11234567888865   67778888999999998765544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.31  E-value=20  Score=40.71  Aligned_cols=199  Identities=15%  Similarity=0.059  Sum_probs=100.3

Q ss_pred             cCEEEEEEccCCCE-EEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 006220          422 GPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (656)
Q Consensus       422 ~~V~~l~~spd~~~-L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~  500 (656)
                      +..-++..+|..-. +.  +.--.|+|++.. |..+....-...++-.+.|+.+ .-+++...+|++++|++-.......
T Consensus        44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~  119 (829)
T KOG2280|consen   44 GGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESN  119 (829)
T ss_pred             CCceEEEeccccccccc--ccceeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhccc
Confidence            44445666653211 11  333468888876 5554443333337778999965 4677778999999999754322111


Q ss_pred             -e--cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec---CCCCeEEEEEcCCCC---EEEEEE-CCC-
Q 006220          501 -M--AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGR---YMASGD-EDG-  569 (656)
Q Consensus       501 -~--~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~---h~~~i~~l~~sp~g~---~L~s~~-~dg-  569 (656)
                       +  ......|..+.+..+|-.+.+  .+|.+.+-.-......+.+..   ...+.+|-...++++   .++-.. ..| 
T Consensus       120 svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~  197 (829)
T KOG2280|consen  120 SVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGL  197 (829)
T ss_pred             ccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhh
Confidence             1  122233444444446644433  455555443222222222221   111222222222221   111111 000 


Q ss_pred             cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       570 ~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      .+..-+....+. ..+....+.+..++.||+.++|+--..+|.|.+-+++..+.....
T Consensus       198 ~~~q~~~~~~q~-~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~  254 (829)
T KOG2280|consen  198 HICQVEESRVQL-HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEF  254 (829)
T ss_pred             cccceecccccc-cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence            011111111111 112222356788999999999999999999999888877665544

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.07  E-value=21  Score=38.43  Aligned_cols=146  Identities=13%  Similarity=0.120  Sum_probs=83.5

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce--eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce--
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP--  497 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~--  497 (656)
                      +....+..++++.+++.+..-.-++-||-  +..  ...-......+..+.|.+++..++++ .+|.+ +|..+.+..  
T Consensus       239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~  314 (398)
T PLN00033        239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEE  314 (398)
T ss_pred             cceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccc
Confidence            33555667788877776654333333443  222  11122234568899999998877665 55654 344444432  


Q ss_pred             ---eEEecC--CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE---ecCCCCeEEEEEcCCCCEEEEEECCC
Q 006220          498 ---LRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF---IGHRSMILSLAMSPDGRYMASGDEDG  569 (656)
Q Consensus       498 ---~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~---~~h~~~i~~l~~sp~g~~L~s~~~dg  569 (656)
                         ......  ....+..+.|.+++..+++| ..|.+.... ..|+.-...   ..-....+.+.|.++++.+++| .+|
T Consensus       315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G  391 (398)
T PLN00033        315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG  391 (398)
T ss_pred             ccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence               222221  22358889998877665555 667766654 344432222   2224568899998876666655 577


Q ss_pred             cEEEE
Q 006220          570 TIMMW  574 (656)
Q Consensus       570 ~I~iw  574 (656)
                      .|.-|
T Consensus       392 ~il~~  396 (398)
T PLN00033        392 VLLRY  396 (398)
T ss_pred             EEEEe
Confidence            76554

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.05  E-value=0.039  Score=58.35  Aligned_cols=143  Identities=17%  Similarity=0.233  Sum_probs=99.4

Q ss_pred             EEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEE-EECCCcEEEEeCCCCeeEEEEecC
Q 006220          468 DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGECVRIFIGH  546 (656)
Q Consensus       468 ~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t-gs~dg~V~iwd~~~~~~~~~~~~h  546 (656)
                      ...|-|.+.-++.++.+..+..||-.... .... ...+....++|.-++..++. +-..+.+.+||+.+......-.+.
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg  116 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-ILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG  116 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcce-eccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence            56788888779999888888888854322 2222 23345566788877765544 556789999999765332211122


Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcE
Q 006220          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV  613 (656)
Q Consensus       547 ~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I  613 (656)
                      ...-.-+.|++.+..++.|...|.+.|+...+.+.+..+-.|...+++++|.+.+. .+.++.|..+
T Consensus       117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L  182 (615)
T KOG2247|consen  117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTL  182 (615)
T ss_pred             cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHH
Confidence            22222378999999999999999999999988877766655999999999999864 5555555443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.87  E-value=22  Score=37.15  Aligned_cols=156  Identities=19%  Similarity=0.263  Sum_probs=92.3

Q ss_pred             CccEEEEEEecCCCEEEEEECCCc------EEEEECCC----CceeE-----EecCC--------CCCeeEEEEcCCCCE
Q 006220          463 NYPVWDVQFNPQGHYFASSSHDRT------ARIWSMDR----IQPLR-----IMAGH--------LSDVDCVRWHINCNY  519 (656)
Q Consensus       463 ~~~V~~l~~sp~~~~l~sgs~Dg~------i~lwd~~~----~~~~~-----~~~~~--------~~~V~~v~~~p~~~~  519 (656)
                      -+.++.+.+.+++..+++.+.+|.      ++.+++..    ...+.     .+...        .-+..++++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            345678888876667777777777      65555443    11111     11111        115568888778877


Q ss_pred             EEEEECC------CcEEEEeCCCCeeEEEEe---------------cCCCCeEEEEEcCCCCEEEEEEC-----CC--c-
Q 006220          520 IATGSSD------KTVRLWDVSSGECVRIFI---------------GHRSMILSLAMSPDGRYMASGDE-----DG--T-  570 (656)
Q Consensus       520 l~tgs~d------g~V~iwd~~~~~~~~~~~---------------~h~~~i~~l~~sp~g~~L~s~~~-----dg--~-  570 (656)
                      +++.-.+      ..|+.++.. |.....+.               ......-+|+++|+|+.|+++.+     |+  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7776666      788888866 66554441               12345788999999996666542     22  1 


Q ss_pred             ------EEE--EeCCC-CeeeEee----eC-----CCccEEEEEEcCCCCEEEEEE-----CCCcEEEEeCC
Q 006220          571 ------IMM--WDLAS-GRCVTPL----MG-----HTSCVWTLAYSCEGSLLASGS-----ADCTVKLWDVT  619 (656)
Q Consensus       571 ------I~i--wD~~~-~~~~~~~----~~-----h~~~V~~l~~s~~~~~l~sgs-----~Dg~I~iWd~~  619 (656)
                            ++|  ||..+ +.....+    ..     ....|..+.+-+++++|+---     ....++|+.+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence                  444  45444 3222222    22     346788999999998776532     23455555554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.61  E-value=2.2  Score=41.84  Aligned_cols=69  Identities=14%  Similarity=0.315  Sum_probs=52.7

Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCeeeEee-------e-------CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPL-------M-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       555 ~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~-------~-------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      +..++.+|++.+.+|.+++||+.+++.+..-       .       .....|.++.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4456889999999999999999998765432       1       2446789999998888777665 57889998765


Q ss_pred             CCce
Q 006220          621 STKV  624 (656)
Q Consensus       621 ~~~~  624 (656)
                      +.-.
T Consensus        97 ~~W~  100 (219)
T PF07569_consen   97 GCWI  100 (219)
T ss_pred             ceeE
Confidence            5433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.44  E-value=10  Score=40.45  Aligned_cols=137  Identities=9%  Similarity=0.073  Sum_probs=84.8

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCCce--eEEe-eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLNAN--LVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-  500 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~--~~~~-~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~-  500 (656)
                      +.+-|...++. +.|...|.+.-|-+.....  ...+ ....++|.++.||+|...+|+--.+++|.+++....++... 
T Consensus        26 ngvFfDDaNkq-lfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQ-LFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcce-EEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            34555543343 3344445566676553321  2222 23466999999999999999999999999999843333221 


Q ss_pred             ---ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220          501 ---MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       501 ---~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~g~~L~s  564 (656)
                         .......|....|..+. -+|.-+.. -+.+|-+.. ...++....|...|.--.|.++.+.+.-
T Consensus       105 ~~~ck~k~~~IlGF~W~~s~-e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL  170 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSST-EIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILL  170 (657)
T ss_pred             HHHhccCcceeEEEEEecCe-eEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEee
Confidence               12233458888998774 44444433 355665543 3445666677788888888887765443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.28  E-value=1.2  Score=31.06  Aligned_cols=32  Identities=19%  Similarity=0.323  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCC---CEEEEEECCCcEEEEeCCCC
Q 006220          548 SMILSLAMSPDG---RYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       548 ~~i~~l~~sp~g---~~L~s~~~dg~I~iwD~~~~  579 (656)
                      +.|.++.|||+.   .+|+.+-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468899999854   48888888899999999863

It contains a characteristic DLL sequence motif.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=89.27  E-value=38  Score=37.08  Aligned_cols=106  Identities=10%  Similarity=0.160  Sum_probs=60.9

Q ss_pred             CccEEEEEEecCCCEEEEEECCCcEEEEECCCCce--eEEe----c-CCCCCeeEEEEcCCC------CEEEEEE-----
Q 006220          463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP--LRIM----A-GHLSDVDCVRWHINC------NYIATGS-----  524 (656)
Q Consensus       463 ~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~--~~~~----~-~~~~~V~~v~~~p~~------~~l~tgs-----  524 (656)
                      -..-|.|+|.|+|++|++--..|.|++++..+...  +..+    . ........|++||+-      .+|++..     
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            34568999999998777665569999998654432  1111    1 134668899999874      3444432     


Q ss_pred             -----CCCcEEEEeCCCC-----eeEEEEecC----CCCeEEEEEcCCCCEEEEEECC
Q 006220          525 -----SDKTVRLWDVSSG-----ECVRIFIGH----RSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       525 -----~dg~V~iwd~~~~-----~~~~~~~~h----~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                           ....|.-|.+...     .....+.+.    ...-..|.|.|||.+.++.++.
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                 1223444544311     111222211    1223468899999876665543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.90  E-value=0.067  Score=56.63  Aligned_cols=137  Identities=10%  Similarity=0.230  Sum_probs=96.5

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEE-EECCCcEEEEECCCCceeEEec
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-gs~Dg~i~lwd~~~~~~~~~~~  502 (656)
                      -....|-|.+..++.++.+..+..||-. ++...... .++...+++|..++..++. +-..+.+.+||+.+......-.
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence            3456788888778888888888999865 33332222 3445567888887776544 4567899999997654332222


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEE
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM  562 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L  562 (656)
                      +....-.-+.|++.+..++.|...|.+++++..+.+.+...-.|...++++++.+.+..+
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI  174 (615)
T ss_pred             cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence            222333337889988899999999999999988776665554588899999999876543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=88.88  E-value=27  Score=34.98  Aligned_cols=196  Identities=10%  Similarity=0.085  Sum_probs=118.5

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-  500 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~-  500 (656)
                      +.-+.++-.|||..-+++...|.|--.|-.+++....--+....-..|...|+|..-++-+.. -|.-.|-++....+. 
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~  140 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP  140 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence            344667888899888888888888888888888766555555566678888888776654433 455555544332221 


Q ss_pred             --ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-CCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          501 --MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (656)
Q Consensus       501 --~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~  577 (656)
                        ............|.+.|+.-+|+... .---.|.. ...+++|.... ..-..|+..|+|..-++.-.++.|-..|..
T Consensus       141 lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~  218 (353)
T COG4257         141 LPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF  218 (353)
T ss_pred             cccccCCCcccceeeCCCccEEEeeccc-cceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence              11223457788899999988887632 11111111 11223333222 345678889999988887777778877876


Q ss_pred             CCeeeEee--eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          578 SGRCVTPL--MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       578 ~~~~~~~~--~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      ++..-..-  ......-..+.-+|.|..-+|....+.+.-+|-..
T Consensus       219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             cCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence            66321111  11122234455566777777766666666666544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.56  E-value=2.6  Score=41.36  Aligned_cols=66  Identities=17%  Similarity=0.266  Sum_probs=50.2

Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-------e-------cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIF-------I-------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       513 ~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-------~-------~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      +..+++++++-+.+|.+++||+.+++++..-       .       .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4567889999999999999999998765322       1       2446788888888888777665 57888898754


Q ss_pred             C
Q 006220          579 G  579 (656)
Q Consensus       579 ~  579 (656)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=88.52  E-value=22  Score=38.65  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=25.8

Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          590 SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       590 ~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      ..|.++...+..+.+++.+.+|.|.+|++..+
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence            34889999998899999999999999999863

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PLN02193 nitrile-specifier protein

Probab=88.25  E-value=38  Score=37.48  Aligned_cols=145  Identities=8%  Similarity=-0.017  Sum_probs=71.3

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCceeEEecC---CCCC-eeEEEEcCCCCEEEEEECCC-----cEEEEeCCCCee
Q 006220          474 QGHYFASSSHD-----RTARIWSMDRIQPLRIMAG---HLSD-VDCVRWHINCNYIATGSSDK-----TVRLWDVSSGEC  539 (656)
Q Consensus       474 ~~~~l~sgs~D-----g~i~lwd~~~~~~~~~~~~---~~~~-V~~v~~~p~~~~l~tgs~dg-----~V~iwd~~~~~~  539 (656)
                      ++..++.|+.+     ..+.+||+.+.+-...-..   .... -.+++. -++..++.|+.++     .+..||+.+.+-
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            45666777654     3577888876543221111   0011 112222 2455666666543     467788876543


Q ss_pred             EEEEe-----cCCCCeEEEEEcCCCCEEEEEECC----CcEEEEeCCCCeeeEeeeC---CC--ccEEEEEEcCCCCEEE
Q 006220          540 VRIFI-----GHRSMILSLAMSPDGRYMASGDED----GTIMMWDLASGRCVTPLMG---HT--SCVWTLAYSCEGSLLA  605 (656)
Q Consensus       540 ~~~~~-----~h~~~i~~l~~sp~g~~L~s~~~d----g~I~iwD~~~~~~~~~~~~---h~--~~V~~l~~s~~~~~l~  605 (656)
                      ...-.     ...... .++ .-+++.++.++.+    ..+.+||+.+.+-...-..   ..  ....++  .-++++++
T Consensus       307 ~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~--~~~~~iyv  382 (470)
T PLN02193        307 FHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA--AVGKHIVI  382 (470)
T ss_pred             EeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE--EECCEEEE
Confidence            32111     001111 122 2256777777655    4588999887653222110   11  111222  23567777


Q ss_pred             EEECC--------------CcEEEEeCCCCCc
Q 006220          606 SGSAD--------------CTVKLWDVTTSTK  623 (656)
Q Consensus       606 sgs~D--------------g~I~iWd~~~~~~  623 (656)
                      .|+.+              +.+.++|+.+.+-
T Consensus       383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W  414 (470)
T PLN02193        383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQW  414 (470)
T ss_pred             ECCccCCccccccCccceeccEEEEEcCcCEE
Confidence            77753              2477888776543

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.20  E-value=5.2  Score=43.25  Aligned_cols=29  Identities=10%  Similarity=-0.174  Sum_probs=22.7

Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          507 DVDCVRWHINCNYIATGSSDKTVRLWDVS  535 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~  535 (656)
                      .|..+..++.|..++..+.+|.+.++=.+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~  133 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPK  133 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchh
Confidence            36677888999999999999988776533

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.20  E-value=32  Score=34.89  Aligned_cols=151  Identities=16%  Similarity=0.125  Sum_probs=93.8

Q ss_pred             ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC--CccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                      .+-+..+.++  +++...+..+.-+++.|+.+.........-  .+--.++.  -.|++..++..|.-+.+.|+.+.+..
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCc
Confidence            4556677777  567777778888999999877654433211  12233333  35889988886666778888765422


Q ss_pred             ---EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC---CCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220          499 ---RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH---RSMILSLAMSPDGRYMASGDEDGTIM  572 (656)
Q Consensus       499 ---~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h---~~~i~~l~~sp~g~~L~s~~~dg~I~  572 (656)
                         .........-..++.  .|++-+.+..|+-+.+-|+....... |.+|   ...+.++..+++..+++..+.  -+.
T Consensus       162 ~lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPv-li~~~n~g~g~~sv~vsdnr~y~vvy~e--gvl  236 (370)
T COG5276         162 QLAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPV-LIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVL  236 (370)
T ss_pred             eeeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCe-EEEEEecCCceEEEEecCCeeEEEEccc--ceE
Confidence               233333343344554  47778888899999999997653322 2222   236778888877666665532  355


Q ss_pred             EEeCCCCe
Q 006220          573 MWDLASGR  580 (656)
Q Consensus       573 iwD~~~~~  580 (656)
                      +-|....+
T Consensus       237 ivd~s~~s  244 (370)
T COG5276         237 IVDVSGPS  244 (370)
T ss_pred             EEecCCCC
Confidence            66665444

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.72  E-value=41  Score=35.71  Aligned_cols=189  Identities=10%  Similarity=0.015  Sum_probs=100.6

Q ss_pred             EEEEEeCCCeEEEEeccCCceeEEeeCCC--ccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEE
Q 006220          435 FILSSSADTTIRLWSTKLNANLVCYKGHN--YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (656)
Q Consensus       435 ~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~--~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~  512 (656)
                      .++.+..+|.|.-.|..++..+.....-.  ..+.+-.+..+|+ ++.++.+|.++.+|.++++.+....... .   ..
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~---~~  144 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S---PY  144 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C---eE
Confidence            44555777778878877776554332211  1222222232555 7888889999999998888887776554 1   22


Q ss_pred             Ec----CCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC---CeEEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeeeE
Q 006220          513 WH----INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDE--DGTIMMWDLASGRCVT  583 (656)
Q Consensus       513 ~~----p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~---~i~~l~~sp~g~~L~s~~~--dg~I~iwD~~~~~~~~  583 (656)
                      +.    .....++.++.++.+.-.|..+|...........   .+..-... ....++.+..  ++.+.-.|..+|....
T Consensus       145 ~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w  223 (370)
T COG1520         145 YASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKW  223 (370)
T ss_pred             EecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEee
Confidence            21    1223444444778898889888888766443221   11000001 1233444444  5566666777776665


Q ss_pred             eeeCCC----ccE--E-EEEEcC--CCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220          584 PLMGHT----SCV--W-TLAYSC--EGSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       584 ~~~~h~----~~V--~-~l~~s~--~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      ....+.    ..+  . .+...+  .+.-+..++.+|.+...+..+++...+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         224 SQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             eeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            532111    001  0 000000  112235556666677777777776665543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=87.61  E-value=30  Score=37.35  Aligned_cols=143  Identities=15%  Similarity=0.182  Sum_probs=83.9

Q ss_pred             CCEEEEEeCCCeEEEEeccCCce----eEEeeCCCccEEEEEEec----CCCEEEEEECCCcEEEEECCCCc--------
Q 006220          433 GDFILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNP----QGHYFASSSHDRTARIWSMDRIQ--------  496 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~l~~sp----~~~~l~sgs~Dg~i~lwd~~~~~--------  496 (656)
                      ...+++||..|.++||+......    +..-..-..||..+....    .....++.=+.+.+.+|.+....        
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence            35899999999999999864331    111122457888887653    22233333567888888873211        


Q ss_pred             -eeEEecCCCCCee--EEEEcC----C-CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220          497 -PLRIMAGHLSDVD--CVRWHI----N-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       497 -~~~~~~~~~~~V~--~v~~~p----~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                       .+..+..|.-.-+  .+++-|    . ..+|.+=+.||.+.+|+-......+.+.+ .--...++|++.-..+++++.+
T Consensus       117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss  195 (418)
T PF14727_consen  117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSS  195 (418)
T ss_pred             EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCc
Confidence             2222223322211  122212    2 35788889999999999665544444433 2222346777777777777777


Q ss_pred             CcEEEEeC
Q 006220          569 GTIMMWDL  576 (656)
Q Consensus       569 g~I~iwD~  576 (656)
                      ..+..|..
T Consensus       196 ~~l~~Yky  203 (418)
T PF14727_consen  196 WTLECYKY  203 (418)
T ss_pred             eeEEEecH
Confidence            77766653

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=87.38  E-value=35  Score=34.54  Aligned_cols=255  Identities=13%  Similarity=0.114  Sum_probs=132.9

Q ss_pred             ceecCCCCCC-ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCC
Q 006220          331 RVHLSSAALP-SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (656)
Q Consensus       331 ~v~l~~~~~p-s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (656)
                      .+++-+.+.| +.....+.+..+--.|+..|  |++.-++.-|.-+-+.|+.......                      
T Consensus       107 GL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~----------------------  162 (370)
T COG5276         107 GLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQ----------------------  162 (370)
T ss_pred             ceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCce----------------------
Confidence            3344344444 33344455555555666554  6676666545556678877522111                      


Q ss_pred             CceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee--CCCccEEEEEEecCCCEEEEEECCCcE
Q 006220          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTA  487 (656)
Q Consensus       410 ~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg~i  487 (656)
                         ..-.+....+.-..++.|  |++-..+..|+-+.+-|+.......-+.  .....+.++..+++..+++..  +--+
T Consensus       163 ---lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egv  235 (370)
T COG5276         163 ---LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGV  235 (370)
T ss_pred             ---eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccce
Confidence               111222223333456666  7777778888999999988654432221  123367778777766555554  3346


Q ss_pred             EEEECCCCceeEEecC-CCCCeeEE-EEcCCCCEEEEEECCCcEEEEeCCCCeeEE---EEecCCCCeEEEEEcCCCCEE
Q 006220          488 RIWSMDRIQPLRIMAG-HLSDVDCV-RWHINCNYIATGSSDKTVRLWDVSSGECVR---IFIGHRSMILSLAMSPDGRYM  562 (656)
Q Consensus       488 ~lwd~~~~~~~~~~~~-~~~~V~~v-~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~---~~~~h~~~i~~l~~sp~g~~L  562 (656)
                      .+-|..+.+....+.. ..+.+.++ .+.-.+++......+.-+.+-|+.+.....   .+......-..+..+  |.++
T Consensus       236 livd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~  313 (370)
T COG5276         236 LIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYN  313 (370)
T ss_pred             EEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCee
Confidence            6777776654443321 11222222 333456677777777777777776432211   111111122223333  4444


Q ss_pred             EEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       563 ~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      ..+..+ ...+-|...-+......+....+.+.+.+-+.+++.+...++-+.||+..
T Consensus       314 yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         314 YIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             EeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence            444433 33444544333222222222334445555556688888899999999863

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=87.12  E-value=1.8  Score=30.16  Aligned_cols=31  Identities=16%  Similarity=0.302  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCC
Q 006220          352 NGLNCASISQDG---SLVAGGFSDSSLKVWDMAK  382 (656)
Q Consensus       352 ~~V~~l~fs~dg---~~La~g~~dg~I~Iwdl~~  382 (656)
                      +.|.|+.|||+.   .+||..-.-|.|.|+|+..
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   5899888889999999873

It contains a characteristic DLL sequence motif.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.70  E-value=5.7  Score=47.63  Aligned_cols=136  Identities=17%  Similarity=0.307  Sum_probs=87.5

Q ss_pred             eCCCeEEEEeccCCceeEEeeCCCccEEEEEE--------ecCCCEEEEEECCCcEEEEECCCCc---ee------EEec
Q 006220          440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQF--------NPQGHYFASSSHDRTARIWSMDRIQ---PL------RIMA  502 (656)
Q Consensus       440 s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~--------sp~~~~l~sgs~Dg~i~lwd~~~~~---~~------~~~~  502 (656)
                      +.|+.+.+|+.+++.....+.+-...|..|..        .|.=+++++.+.--.|.++-+.-..   ..      ..+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            45778999999998888888877777766643        3333444444444556665432110   01      1222


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC----CCC---e-e----------------EEEEe-cCCCCeEEEEEcC
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDV----SSG---E-C----------------VRIFI-GHRSMILSLAMSP  557 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~----~~~---~-~----------------~~~~~-~h~~~i~~l~~sp  557 (656)
                      .....|.|+....+|+.+++| .||.  +|.+    ..|   + |                +..+. .+..+|..|+...
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            334668999977788777766 4554  4433    111   1 1                01122 5667999999998


Q ss_pred             CCCEEEEEECCCcEEEEeCCC
Q 006220          558 DGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       558 ~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      ....+.+-+..|+|.+||+..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            888999999999999999976

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=86.61  E-value=65  Score=36.77  Aligned_cols=162  Identities=14%  Similarity=0.122  Sum_probs=88.3

Q ss_pred             ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE--EeeC-CCc------cEEEEEEecCCCEEEEEEC-C---CcE
Q 006220          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--CYKG-HNY------PVWDVQFNPQGHYFASSSH-D---RTA  487 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~--~~~~-h~~------~V~~l~~sp~~~~l~sgs~-D---g~i  487 (656)
                      .+.|.++.|.++++.+++...+|.|.+||...+....  ..+. +..      -|.....-....++++.+. +   -..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            6789999999999999999999999999993222111  1111 111      1222221112334444443 2   245


Q ss_pred             EEEEC--CCCceeEEec---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC-----C-CCeEEEEEc
Q 006220          488 RIWSM--DRIQPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-----R-SMILSLAMS  556 (656)
Q Consensus       488 ~lwd~--~~~~~~~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-----~-~~i~~l~~s  556 (656)
                      +++.+  +.. .+..+.   .+........|+-+...|+.- .+++|.+|++.+.+.+.++.-.     . ..+.++.--
T Consensus       209 kL~~l~~~~~-~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~  286 (670)
T PF10395_consen  209 KLISLSNESS-SIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP  286 (670)
T ss_pred             EEEEeccCCc-ceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence            67777  222 222222   222233333444333344333 6789999999888776655422     1 223333322


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCeeeEeee
Q 006220          557 PDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (656)
Q Consensus       557 p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~  586 (656)
                      ...+.|++.  ++.|++.|+.-...+.++.
T Consensus       287 s~nRvLLs~--~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  287 SPNRVLLSV--NNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             CCCeEEEEc--CCEEEEEeehhhhhhhhhh
Confidence            233455543  5689999997666665554

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.29  E-value=52  Score=35.41  Aligned_cols=146  Identities=12%  Similarity=0.095  Sum_probs=82.4

Q ss_pred             EEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-----E
Q 006220          466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-----V  540 (656)
Q Consensus       466 V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-----~  540 (656)
                      ...+..++++.+++.+.....++-||--...-...-......+..+.|.+++..++++ .+|.+. |....+..     .
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence            3445667777776666543333334432211112222344668899999998877766 455543 33344431     1


Q ss_pred             EEEec--CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee---CCCccEEEEEEcCCCCEEEEEECCCcEEE
Q 006220          541 RIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADCTVKL  615 (656)
Q Consensus       541 ~~~~~--h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i  615 (656)
                      .....  ....+..+.|.+++..+++| ..|.+.... ..|+.-....   .-....+.+.|.++++.+++ +.+|.|.-
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~  395 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLR  395 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEE
Confidence            21111  12358889999887765555 667666653 4555433332   22457889999877665554 45777654


Q ss_pred             E
Q 006220          616 W  616 (656)
Q Consensus       616 W  616 (656)
                      |
T Consensus       396 ~  396 (398)
T PLN00033        396 Y  396 (398)
T ss_pred             e
Confidence            4

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=86.09  E-value=18  Score=40.94  Aligned_cols=32  Identities=9%  Similarity=0.079  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKL  383 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~  383 (656)
                      .-++++.-+|.|+-++.|..||+|++|++.+.
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r   46 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPR   46 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence            34778888899999999999999999998754

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=85.72  E-value=71  Score=36.44  Aligned_cols=158  Identities=11%  Similarity=0.083  Sum_probs=84.8

Q ss_pred             CccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE--Eec-CCCCC------eeEEEEcCCCCEEEEEEC-C---CcE
Q 006220          463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR--IMA-GHLSD------VDCVRWHINCNYIATGSS-D---KTV  529 (656)
Q Consensus       463 ~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~--~~~-~~~~~------V~~v~~~p~~~~l~tgs~-d---g~V  529 (656)
                      ...|.++.|.+++..+++.-.+|.|.+||........  ... .+...      |..........++++.+. +   -..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            5678899999999999999999999999993221111  111 11111      111111122345555443 2   257


Q ss_pred             EEEeCC-CCeeEEEEe---cCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeeEeeeCC-----C-ccEEEEEEc
Q 006220          530 RLWDVS-SGECVRIFI---GHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLMGH-----T-SCVWTLAYS  598 (656)
Q Consensus       530 ~iwd~~-~~~~~~~~~---~h~~~i~~l~~sp-~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h-----~-~~V~~l~~s  598 (656)
                      +++.+. ....+..+.   .+........|+- +|.+..-  .++.|.+|++...+...++.-.     . ..+.++.--
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~  286 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP  286 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence            777771 122222221   1112222222222 4543333  6789999999888777665422     1 234444422


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          599 CEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       599 ~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      ...+.|++  .++.|++.|+.-...+
T Consensus       287 s~nRvLLs--~~nkIyLld~~~~siL  310 (670)
T PF10395_consen  287 SPNRVLLS--VNNKIYLLDLKFESIL  310 (670)
T ss_pred             CCCeEEEE--cCCEEEEEeehhhhhh
Confidence            23344443  3668999998655443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=85.52  E-value=15  Score=38.58  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=56.1

Q ss_pred             cEEEEEEecCCCEEEEEECCCcEEEEECCCCc--eeEEe----cCCCCCeeEEEEcCC---CCEEEEEEC-C--------
Q 006220          465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLRIM----AGHLSDVDCVRWHIN---CNYIATGSS-D--------  526 (656)
Q Consensus       465 ~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~--~~~~~----~~~~~~V~~v~~~p~---~~~l~tgs~-d--------  526 (656)
                      ..+.|+|.|+|..|++ ...|.|++++.+...  .+..+    .........++++|+   ..+|++... .        
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            3578999999877665 569999999933322  22222    133456789999994   344444332 1        


Q ss_pred             CcEEEEeCCCC--e------eEEEEec---CCCCeEEEEEcCCCCEEEEEECC
Q 006220          527 KTVRLWDVSSG--E------CVRIFIG---HRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       527 g~V~iwd~~~~--~------~~~~~~~---h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      ..|.-|....+  .      .+.....   ....-..|.|.|||.+.++.+..
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence            23444444333  1      1112222   23455679999999776665543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=85.52  E-value=51  Score=34.58  Aligned_cols=39  Identities=18%  Similarity=0.318  Sum_probs=18.5

Q ss_pred             cEEEEeCCCCee--eEeeeCCCccEEEEEEcCCCCEEEEEECC
Q 006220          570 TIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSAD  610 (656)
Q Consensus       570 ~I~iwD~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~D  610 (656)
                      .+.+||..+.+-  +..+..  ..-...+..-++.+++.|+.+
T Consensus       291 ~~e~yd~~~~~W~~~~~lp~--~~~~~~~~~~~~~iyv~GG~~  331 (346)
T TIGR03547       291 SSEVYALDNGKWSKVGKLPQ--GLAYGVSVSWNNGVLLIGGEN  331 (346)
T ss_pred             EeeEEEecCCcccccCCCCC--CceeeEEEEcCCEEEEEeccC
Confidence            466788765432  222211  111122334467777777754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=85.21  E-value=56  Score=35.46  Aligned_cols=31  Identities=32%  Similarity=0.669  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          548 SMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       548 ~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      ..|.+++..+..+.+++.+.+|.|.+||+..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            4489999999889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.04  E-value=68  Score=35.56  Aligned_cols=117  Identities=14%  Similarity=0.094  Sum_probs=61.4

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCcc---EEEEEEecCCCEEEEEEC-------------CCcEEEE
Q 006220          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP---VWDVQFNPQGHYFASSSH-------------DRTARIW  490 (656)
Q Consensus       427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---V~~l~~sp~~~~l~sgs~-------------Dg~i~lw  490 (656)
                      +...++|.+++..+  +.+..+|+. |+.+..+......   -.++..-|+|++|+.+..             .-.|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            55667887776555  678888886 5555544432211   346778899999888772             1124444


Q ss_pred             ECCCCceeEEec--CCC-------------------------CCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeeEEE
Q 006220          491 SMDRIQPLRIMA--GHL-------------------------SDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRI  542 (656)
Q Consensus       491 d~~~~~~~~~~~--~~~-------------------------~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~~~~~~~  542 (656)
                      | .+++.+..+.  .|.                         -.++++.+.+....|+.+++ -..|...|.++++....
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence            4 4444443321  110                         13788999985555555555 45899999889988877


Q ss_pred             EecCC
Q 006220          543 FIGHR  547 (656)
Q Consensus       543 ~~~h~  547 (656)
                      +-.+.
T Consensus       309 lg~~~  313 (477)
T PF05935_consen  309 LGPPG  313 (477)
T ss_dssp             ES-ST
T ss_pred             eCCCC
Confidence            76553

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=85.00  E-value=90  Score=36.94  Aligned_cols=157  Identities=13%  Similarity=0.169  Sum_probs=93.9

Q ss_pred             CCCccEEEEEEe---c----CCCEEEEEECCCcEEEEECC------C---------CceeEEec---CCCCCeeEEEEcC
Q 006220          461 GHNYPVWDVQFN---P----QGHYFASSSHDRTARIWSMD------R---------IQPLRIMA---GHLSDVDCVRWHI  515 (656)
Q Consensus       461 ~h~~~V~~l~~s---p----~~~~l~sgs~Dg~i~lwd~~------~---------~~~~~~~~---~~~~~V~~v~~~p  515 (656)
                      ....||..|+|.   .    ...+|++-. ...+.|+...      .         ..++..+.   ....+...|+|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456788888887   2    223555443 4556666511      1         12333333   1234567899998


Q ss_pred             -CCCEEEEEECCCcEEEEeCCCC-----eeEEEEecCCCC----------eEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          516 -NCNYIATGSSDKTVRLWDVSSG-----ECVRIFIGHRSM----------ILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       516 -~~~~l~tgs~dg~V~iwd~~~~-----~~~~~~~~h~~~----------i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                       +...||+....|...|||+...     ...+....+.+.          -..|.|.++...|+.++. ..+.++|+.+.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence             4568999999999999999211     111111122222          237889888777777764 57889999877


Q ss_pred             eeeEee--eCCCccEEEEEEcCC--CCEEEEEECCCcEEEEeCCCC
Q 006220          580 RCVTPL--MGHTSCVWTLAYSCE--GSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       580 ~~~~~~--~~h~~~V~~l~~s~~--~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      .....+  ......|..+.-++.  +..++-.  ...|...++...
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~  278 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS  278 (765)
T ss_pred             CccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence            653312  123367888888876  3333332  246777777763

These proteins are found in fungi.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=84.87  E-value=37  Score=32.70  Aligned_cols=121  Identities=13%  Similarity=0.197  Sum_probs=68.4

Q ss_pred             CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC--C---CCCeeEEEEcC
Q 006220          441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG--H---LSDVDCVRWHI  515 (656)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~--~---~~~V~~v~~~p  515 (656)
                      .+|.-..+|.++.+++..+. -.+.-|.++.  ++..++.++...+++.-|..+......+..  .   -..++-+.|- 
T Consensus       109 ~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-  184 (262)
T COG3823         109 KEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-  184 (262)
T ss_pred             ccceeEEEChHHhhhhcccc-cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-
Confidence            46778889988888776654 3445566655  455566665556666666554433322221  1   1122233332 


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCeeEEEEe------------cCCCCeEEEEEcCCC-CEEEEE
Q 006220          516 NCNYIATGSSDKTVRLWDVSSGECVRIFI------------GHRSMILSLAMSPDG-RYMASG  565 (656)
Q Consensus       516 ~~~~l~tgs~dg~V~iwd~~~~~~~~~~~------------~h~~~i~~l~~sp~g-~~L~s~  565 (656)
                      +|...|-.-.+..|...|..+|+.+..+.            .|..-.+.|++.|++ +++++|
T Consensus       185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            45444444445556666777777665442            244456778999877 455555

>PLN02153 epithiospecifier protein

Probab=84.64  E-value=56  Score=34.26  Aligned_cols=66  Identities=6%  Similarity=0.036  Sum_probs=32.9

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCceeEE--ecC---CCCCeeEEEEcCCCCEEEEEECC-----------CcEEEE
Q 006220          474 QGHYFASSSHD-----RTARIWSMDRIQPLRI--MAG---HLSDVDCVRWHINCNYIATGSSD-----------KTVRLW  532 (656)
Q Consensus       474 ~~~~l~sgs~D-----g~i~lwd~~~~~~~~~--~~~---~~~~V~~v~~~p~~~~l~tgs~d-----------g~V~iw  532 (656)
                      ++.+++.|+.+     ..+.+||+.+.+-...  +..   ........+..-++..++.|+.+           ..|.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            46667777753     2577888776433221  100   11111111112345566666643           247788


Q ss_pred             eCCCCee
Q 006220          533 DVSSGEC  539 (656)
Q Consensus       533 d~~~~~~  539 (656)
                      |..+..-
T Consensus       165 d~~~~~W  171 (341)
T PLN02153        165 NIADGKW  171 (341)
T ss_pred             ECCCCeE
Confidence            8876543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=84.63  E-value=8.1  Score=36.29  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=25.5

Q ss_pred             cCEEEEEEccCC------CEEEEEeCCCeEEEEeccC
Q 006220          422 GPVYSASFSPLG------DFILSSSADTTIRLWSTKL  452 (656)
Q Consensus       422 ~~V~~l~~spd~------~~L~s~s~Dg~I~lwd~~~  452 (656)
                      ..|.+++|||.|      ..|++.+.+|.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999955      3688899999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=84.21  E-value=57  Score=34.05  Aligned_cols=143  Identities=15%  Similarity=0.219  Sum_probs=85.8

Q ss_pred             ccCEEEEEEccCCCEEEEEeCCCe------EEEEeccCC----ceeE-----EeeCCCc--------cEEEEEEecCCCE
Q 006220          421 SGPVYSASFSPLGDFILSSSADTT------IRLWSTKLN----ANLV-----CYKGHNY--------PVWDVQFNPQGHY  477 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~Dg~------I~lwd~~~~----~~~~-----~~~~h~~--------~V~~l~~sp~~~~  477 (656)
                      -+.+.++.+.+++..+++.|.+|.      +..+++...    ..+.     .+....+        ..-+|++.++|.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            367788999976667777777777      655555431    1111     1111111        3347888777877


Q ss_pred             EEEEECC------CcEEEEECCCCceeEEec---------------CCCCCeeEEEEcCCCCEEEEEEC-----CC--c-
Q 006220          478 FASSSHD------RTARIWSMDRIQPLRIMA---------------GHLSDVDCVRWHINCNYIATGSS-----DK--T-  528 (656)
Q Consensus       478 l~sgs~D------g~i~lwd~~~~~~~~~~~---------------~~~~~V~~v~~~p~~~~l~tgs~-----dg--~-  528 (656)
                      +++.=.+      ..|+.++.+ ++....+.               .......+++++|+|+.|+++..     |+  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7776666      678888866 44433331               12345789999999997766532     22  1 


Q ss_pred             ------EEE--EeCCC-CeeEEEE--ec-------CCCCeEEEEEcCCCCEEEE
Q 006220          529 ------VRL--WDVSS-GECVRIF--IG-------HRSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       529 ------V~i--wd~~~-~~~~~~~--~~-------h~~~i~~l~~sp~g~~L~s  564 (656)
                            +++  ||..+ +.....+  .-       ....|+.+.+-+++++|+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  455  45444 3233222  21       3457889999999987765

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=83.59  E-value=66  Score=34.26  Aligned_cols=193  Identities=17%  Similarity=0.216  Sum_probs=107.9

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee-cCc---cCEEEEEEccCCCE-
Q 006220          361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHS---GPVYSASFSPLGDF-  435 (656)
Q Consensus       361 ~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~---~~V~~l~~spd~~~-  435 (656)
                      |..++++....++-+.+||++....                             ..+. +..   .-.+.+.+  .|+. 
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~l-----------------------------q~~~~Gr~NNVDvrygf~l--~g~~v  114 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKEL-----------------------------QSLPVGRPNNVDVRYGFPL--NGKTV  114 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EE-----------------------------EEE-SS-EEEEEEEEEEEE--TTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEE-----------------------------EeecCCCcceeeeecceec--CCceE
Confidence            4566777777888999999985221                             1111 111   11223333  2332 


Q ss_pred             -EEEEeC-C---CeEEEEeccCC-ceeEEeeC-------CCccEEEEEEe--c-CCC-EEEEEECCCcEEEEECC---CC
Q 006220          436 -ILSSSA-D---TTIRLWSTKLN-ANLVCYKG-------HNYPVWDVQFN--P-QGH-YFASSSHDRTARIWSMD---RI  495 (656)
Q Consensus       436 -L~s~s~-D---g~I~lwd~~~~-~~~~~~~~-------h~~~V~~l~~s--p-~~~-~l~sgs~Dg~i~lwd~~---~~  495 (656)
                       |+.++. +   .+|++|.+... ..+..+..       ....+..+|+.  + +|. ++++.+.+|.+..|-+.   .+
T Consensus       115 Dlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g  194 (381)
T PF02333_consen  115 DLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG  194 (381)
T ss_dssp             EEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS
T ss_pred             EEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC
Confidence             444432 2   47999988632 22333321       11236677764  3 344 56677789988888763   22


Q ss_pred             ----ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-----eeEEEEec--CCCCeEEEEEc--CCC-CE
Q 006220          496 ----QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-----ECVRIFIG--HRSMILSLAMS--PDG-RY  561 (656)
Q Consensus       496 ----~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-----~~~~~~~~--h~~~i~~l~~s--p~g-~~  561 (656)
                          +.+|.|.. .+.+..|.......+|+.|-.+.-|+-|+....     ..+....+  ....|-.|++-  ++| .|
T Consensus       195 ~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gY  273 (381)
T PF02333_consen  195 KVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGY  273 (381)
T ss_dssp             SEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EE
T ss_pred             cEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeE
Confidence                35777764 357889999988889999999988888887622     22222222  23456677764  343 34


Q ss_pred             EE-EEECCCcEEEEeCCC-CeeeEee
Q 006220          562 MA-SGDEDGTIMMWDLAS-GRCVTPL  585 (656)
Q Consensus       562 L~-s~~~dg~I~iwD~~~-~~~~~~~  585 (656)
                      |+ |.-.+++..|||... ...+..+
T Consensus       274 LivSsQG~~sf~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  274 LIVSSQGDNSFAVYDREGPNAYVGSF  299 (381)
T ss_dssp             EEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred             EEEEcCCCCeEEEEecCCCCcccceE
Confidence            54 444677899999764 3434444

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=83.26  E-value=68  Score=34.16  Aligned_cols=187  Identities=18%  Similarity=0.214  Sum_probs=109.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEe----cCCCE--EEEEEC-C---CcEEEEECCCC-ceeE
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN----PQGHY--FASSSH-D---RTARIWSMDRI-QPLR  499 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s----p~~~~--l~sgs~-D---g~i~lwd~~~~-~~~~  499 (656)
                      |...+++....++-+.+||++ |+.+..+..  +....+..-    -.|..  |+.++. +   .+|++|.++.. ..+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            345678888888999999998 556665542  223333221    13433  445542 2   46999987632 2333


Q ss_pred             EecC-------CCCCeeEEEEc--C-CCC-EEEEEECCCcEEEEeCC---CC----eeEEEEecCCCCeEEEEEcCCCCE
Q 006220          500 IMAG-------HLSDVDCVRWH--I-NCN-YIATGSSDKTVRLWDVS---SG----ECVRIFIGHRSMILSLAMSPDGRY  561 (656)
Q Consensus       500 ~~~~-------~~~~V~~v~~~--p-~~~-~l~tgs~dg~V~iwd~~---~~----~~~~~~~~h~~~i~~l~~sp~g~~  561 (656)
                      .+..       ....+..+|+.  | +|. |.++...+|.+..|-+.   ++    +.+|.|... +.+-.|.......+
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-sQ~EGCVVDDe~g~  221 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-SQPEGCVVDDETGR  221 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-S-EEEEEEETTTTE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-CcceEEEEecccCC
Confidence            3321       12345566653  3 344 56677888988887764   33    467888753 46888888888889


Q ss_pred             EEEEECCCcEEEEeCCC-----CeeeEeeeC--CCccEEEEEEc--CCC-CE-EEEEECCCcEEEEeCCCC
Q 006220          562 MASGDEDGTIMMWDLAS-----GRCVTPLMG--HTSCVWTLAYS--CEG-SL-LASGSADCTVKLWDVTTS  621 (656)
Q Consensus       562 L~s~~~dg~I~iwD~~~-----~~~~~~~~~--h~~~V~~l~~s--~~~-~~-l~sgs~Dg~I~iWd~~~~  621 (656)
                      |+.|-++--|.-|+...     ++.+....+  ....|-.|+.-  .++ .| |+|.-.+++..||+....
T Consensus       222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            99999988777777652     233333322  33567777764  333 24 444446788999998764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.04  E-value=14  Score=44.64  Aligned_cols=136  Identities=16%  Similarity=0.237  Sum_probs=86.3

Q ss_pred             ECCCcEEEEECCCCceeEEecCCCCCeeEEEEc--------CCCCEEEEEECCCcEEEEeCC----CCeeE-----EEEe
Q 006220          482 SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH--------INCNYIATGSSDKTVRLWDVS----SGECV-----RIFI  544 (656)
Q Consensus       482 s~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~--------p~~~~l~tgs~dg~V~iwd~~----~~~~~-----~~~~  544 (656)
                      +-|..+.+|+.++......+.+-...|..|..-        |.=++++.-+.--.|.++-+.    ++..-     ..+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            357889999999877777776666666555432        222344443344455555432    21110     1122


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC----CC---e-e----------------eEeee-CCCccEEEEEEcC
Q 006220          545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA----SG---R-C----------------VTPLM-GHTSCVWTLAYSC  599 (656)
Q Consensus       545 ~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~----~~---~-~----------------~~~~~-~h~~~V~~l~~s~  599 (656)
                      .....|+|+....+|+.+++|- ||  .+|.+.    .|   + |                +-.+. .+..+|..++...
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            2345788999888898887775 45  455541    11   0 1                11223 4567999999998


Q ss_pred             CCCEEEEEECCCcEEEEeCCC
Q 006220          600 EGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       600 ~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      ..+++.+-+.-|+|.+|++..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            888999999999999999987

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=81.80  E-value=69  Score=33.24  Aligned_cols=107  Identities=4%  Similarity=0.061  Sum_probs=51.1

Q ss_pred             CCCEEEEEeCC-----CeEEEEeccCCce---eEEeeCCCccE--EEEEEecCCCEEEEEEC-----CCcEEEEECCCCc
Q 006220          432 LGDFILSSSAD-----TTIRLWSTKLNAN---LVCYKGHNYPV--WDVQFNPQGHYFASSSH-----DRTARIWSMDRIQ  496 (656)
Q Consensus       432 d~~~L~s~s~D-----g~I~lwd~~~~~~---~~~~~~h~~~V--~~l~~sp~~~~l~sgs~-----Dg~i~lwd~~~~~  496 (656)
                      ++..++.|+.+     ..+..+|+.+...   ......-..+.  .+++.. ++..++.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45566666654     3566677765542   11111111111  122222 5666677764     2357778877654


Q ss_pred             eeEEecCC-CCCeeEEEEcCCCCEEEEEECCC----cEEEEeCCCCee
Q 006220          497 PLRIMAGH-LSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGEC  539 (656)
Q Consensus       497 ~~~~~~~~-~~~V~~v~~~p~~~~l~tgs~dg----~V~iwd~~~~~~  539 (656)
                      -...-... .......+...++...+.|+.++    .+..||..+.+-
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            32211111 11112222233566777777653    356888877653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=81.78  E-value=8.2  Score=43.60  Aligned_cols=38  Identities=21%  Similarity=0.455  Sum_probs=29.5

Q ss_pred             CeeEEEEcC----CCCEEEEEECCCcEEEEeCCCCeeEEEEe
Q 006220          507 DVDCVRWHI----NCNYIATGSSDKTVRLWDVSSGECVRIFI  544 (656)
Q Consensus       507 ~V~~v~~~p----~~~~l~tgs~dg~V~iwd~~~~~~~~~~~  544 (656)
                      .+..+++++    +..++++.+.|+++|+||+.++.++....
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence            455566666    67899999999999999999999977653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=81.67  E-value=6.9  Score=36.75  Aligned_cols=30  Identities=20%  Similarity=0.285  Sum_probs=24.9

Q ss_pred             CCeeEEEEcCCC------CEEEEEECCCcEEEEeCC
Q 006220          506 SDVDCVRWHINC------NYIATGSSDKTVRLWDVS  535 (656)
Q Consensus       506 ~~V~~v~~~p~~------~~l~tgs~dg~V~iwd~~  535 (656)
                      ..|..++|+|.|      .+|++.+.++.|.||...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            478999999854      478889999999999865

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=81.47  E-value=1.1e+02  Score=35.34  Aligned_cols=31  Identities=3%  Similarity=0.115  Sum_probs=23.7

Q ss_pred             CCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220          462 HNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (656)
Q Consensus       462 h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~  492 (656)
                      -...|...+||.|...++....+++|.+++.
T Consensus       111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k  141 (1243)
T COG5290         111 VSNGIVAASWSADEKTWCVVTSTREILLFDK  141 (1243)
T ss_pred             ccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence            3456778888888887877777888888763

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=81.43  E-value=3  Score=44.14  Aligned_cols=167  Identities=15%  Similarity=0.106  Sum_probs=99.8

Q ss_pred             EeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE-Ee-eC-CC---ccEE-EEEEecCCCEEEEEECCCcEE
Q 006220          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CY-KG-HN---YPVW-DVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       416 ~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~-~~-~~-h~---~~V~-~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                      .+..-...|..+-..|||+.|..-+. .++.++++....... .+ .. ..   ..|. .+..-..|..+++++.||.+.
T Consensus       215 ~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs  293 (733)
T COG4590         215 LLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS  293 (733)
T ss_pred             hcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence            34445577888899999998876665 678888887543211 11 11 01   1121 122223566788899999998


Q ss_pred             EE-ECCCC-c----eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEE
Q 006220          489 IW-SMDRI-Q----PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM  562 (656)
Q Consensus       489 lw-d~~~~-~----~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L  562 (656)
                      -| |.+.. .    .++.+.-....+..+.-..+.+-+++-+..|++..+.....+.+-. ..--..+.-+++||++.++
T Consensus       294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~L  372 (733)
T COG4590         294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAYL  372 (733)
T ss_pred             eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccchh
Confidence            88 44322 1    2333333334444444334455677777888888876544443322 2222356678999999998


Q ss_pred             EEEECCCcEEEEeCCCCeeeEee
Q 006220          563 ASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       563 ~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      ++-. .|.|+++.+.+..+-.++
T Consensus       373 l~e~-~gki~~~~l~Nr~Peisw  394 (733)
T COG4590         373 LSED-QGKIRLAQLENRNPEISW  394 (733)
T ss_pred             eeec-CCceEEEEecCCCCCccH
Confidence            8764 578999988765544333

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=80.61  E-value=84  Score=33.48  Aligned_cols=38  Identities=16%  Similarity=0.246  Sum_probs=18.2

Q ss_pred             EEEEeCCCCeee--EeeeCCCccEEEEEEcCCCCEEEEEECC
Q 006220          571 IMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSAD  610 (656)
Q Consensus       571 I~iwD~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~sgs~D  610 (656)
                      +.+||..+.+-.  ..+..  ..-...+..-++.+++.||..
T Consensus       314 ~e~yd~~~~~W~~~~~lp~--~r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQ--GLAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcCCC--CccceEEEEeCCEEEEEcCCC
Confidence            457887765422  22211  111122333457778887754

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=80.60  E-value=30  Score=39.53  Aligned_cols=206  Identities=15%  Similarity=0.126  Sum_probs=97.6

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec-------
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-------  419 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------  419 (656)
                      ...-.++|-..+||.|.+.++.-+.+..|-+++-.-...... . +.. .+.......+ .-+.++.-+.+.|       
T Consensus       108 vG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~-~-L~~-~dl~ef~khi-~VgWgkketqfrgk~~raql  183 (1243)
T COG5290         108 VGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEY-H-LKK-SDLVEFGKHI-RVGWGKKETQFRGKGARAQL  183 (1243)
T ss_pred             hccccCceEEEeeccCCceEEEEEcCceEEEEeccccccchh-h-cch-hHHHHhccce-Eeeecccchhccccchhhhc
Confidence            344578899999999999888888888898887432100000 0 000 0000000000 0000000000000       


Q ss_pred             ---------CccCE-------EEEEEccCCCEEEEEeCC----CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEE
Q 006220          420 ---------HSGPV-------YSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA  479 (656)
Q Consensus       420 ---------h~~~V-------~~l~~spd~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~  479 (656)
                               ..|.+       .-++|-.|..+.+.+...    ..+++|+-. |..-......++.-..++|-|+|..++
T Consensus       184 rdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~e~~LSWkpqgS~~a  262 (1243)
T COG5290         184 RDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGMEHQLSWKPQGSKYA  262 (1243)
T ss_pred             cCCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccc-cccccccCCcccchhccccccCCceee
Confidence                     01111       235565566665555432    235555532 221111112223334579999999999


Q ss_pred             EEECCCc-----EEEEECC---CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeE
Q 006220          480 SSSHDRT-----ARIWSMD---RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL  551 (656)
Q Consensus       480 sgs~Dg~-----i~lwd~~---~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~  551 (656)
                      +-+.||.     +.++...   .+..-.. .+-...+..++|+-+...++.+ ..+.+.+|-..+-.---...-.-..+.
T Consensus       263 ti~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s  340 (1243)
T COG5290         263 TIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGIS  340 (1243)
T ss_pred             eeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcc
Confidence            9886653     3333321   1211100 1223345667777666555544 346789997655433222222233456


Q ss_pred             EEEEcCCC
Q 006220          552 SLAMSPDG  559 (656)
Q Consensus       552 ~l~~sp~g  559 (656)
                      -+.|+|..
T Consensus       341 ~vkwhpe~  348 (1243)
T COG5290         341 YVKWHPEE  348 (1243)
T ss_pred             eeeecccc
Confidence            67777743

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=80.24  E-value=78  Score=32.85  Aligned_cols=134  Identities=9%  Similarity=0.134  Sum_probs=63.7

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCce---eEEecCCCCCe--eEEEEcCCCCEEEEEEC-----CCcEEEEeCCCCe
Q 006220          474 QGHYFASSSHD-----RTARIWSMDRIQP---LRIMAGHLSDV--DCVRWHINCNYIATGSS-----DKTVRLWDVSSGE  538 (656)
Q Consensus       474 ~~~~l~sgs~D-----g~i~lwd~~~~~~---~~~~~~~~~~V--~~v~~~p~~~~l~tgs~-----dg~V~iwd~~~~~  538 (656)
                      ++..++.|+.+     ..+..+|+.+.+.   ...+..-..+.  .+++. -++...+.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45667777754     3466677765542   12222111111  12222 24556666653     2468889987654


Q ss_pred             eEEE--EecCCCCeEEEEEcCCCCEEEEEECCC----cEEEEeCCCCee--eEeeeCCCcc-----EEEEEEcCCCCEEE
Q 006220          539 CVRI--FIGHRSMILSLAMSPDGRYMASGDEDG----TIMMWDLASGRC--VTPLMGHTSC-----VWTLAYSCEGSLLA  605 (656)
Q Consensus       539 ~~~~--~~~h~~~i~~l~~sp~g~~L~s~~~dg----~I~iwD~~~~~~--~~~~~~h~~~-----V~~l~~s~~~~~l~  605 (656)
                      -...  +.. .......+...++++.+.|+.++    .+.+||..+.+-  +..+.....+     ..++. ..++.+++
T Consensus       151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~-~~~~~iyv  228 (323)
T TIGR03548       151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIK-INESLLLC  228 (323)
T ss_pred             eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEE-ECCCEEEE
Confidence            3321  111 11122222334567777777654    356788876543  2221100011     11122 23567888


Q ss_pred             EEECC
Q 006220          606 SGSAD  610 (656)
Q Consensus       606 sgs~D  610 (656)
                      .||.+
T Consensus       229 ~GG~~  233 (323)
T TIGR03548       229 IGGFN  233 (323)
T ss_pred             ECCcC
Confidence            88866

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.18  E-value=13  Score=38.93  Aligned_cols=121  Identities=17%  Similarity=0.215  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHHhcCccHHHHHHHHHHhcCCCCCCCCCCCCCCchhhccccc-ccccccCChhhHHHHHHHHHHHHhcc
Q 006220            3 ELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFR-TFSESEDGPARYQDEYSKLRSWTYSS   81 (656)
Q Consensus         3 ~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~s   81 (656)
                      .+.++.|+..++-+.|-.+.-..|.+|+.....  .....   .+-.--+.|. ...  +.|       -.-..+|+.+.
T Consensus       116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~--~~~~~---~~F~el~~Iv~~lk--e~D-------l~~aLeWa~~~  181 (394)
T KOG2817|consen  116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSED--ESKSR---TEFVELNQIVEALK--ERD-------LEPALEWAESN  181 (394)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCc--chhhh---hhHHHHHHHHHHHH--hcc-------chhHHHHHHHh
Confidence            455799999999999999999999999987542  00000   0000001111 111  111       12236788887


Q ss_pred             ccchhhhhhhhhHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhhhHHhhHHHHHHHhc
Q 006220           82 LDLYKHELLHVLYPVFIHCFMDLVAKGHIQ--EARTFFNNFREDHEMMHLRDLQKLEG  137 (656)
Q Consensus        82 ld~~k~el~~~l~p~f~~~~l~l~~~~~~~--~a~~f~~~~~~~~~~~~~~~~~~l~~  137 (656)
                      -+..+.+=+.|=|=++-+-|++++..|..+  +|-.+-.++-.-|...|..||+.+-.
T Consensus       182 ~~~L~~~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~  239 (394)
T KOG2817|consen  182 RQKLKEKSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG  239 (394)
T ss_pred             hhhhccccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence            777777667788888999999999999988  88888887777777778888888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	656
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-35
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-30
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-28
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		8e-19
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-28
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-19
2gnq_A	336	Structure Of Wdr5 Length = 336		8e-28
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-19
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-27
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-19
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-27
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-19
2h9l_A	329	Wdr5delta23 Length = 329		2e-27
2h9l_A	329	Wdr5delta23 Length = 329		6e-19
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-27
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-19
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-27
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		7e-19
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-27
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-19
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-27
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		7e-19
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-27
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		8e-19
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-27
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-19
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-27
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-19
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-27
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-18
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-27
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-18
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-27
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		9e-19
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-26
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-18
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		6e-26
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-23
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-21
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-14
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-21
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-21
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-13
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-20
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-07
2j4b_A	138	Crystal Structure Of Encephalitozoon Cuniculi Taf5		2e-20
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-20
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		7e-20
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-19
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-19
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-19
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-19
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-19
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-18
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-18
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-18
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		7e-15
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-18
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-18
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-18
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		6e-18
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		6e-18
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		7e-18
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-17
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		6e-17
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-17
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-17
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-17
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-17
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-17
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-12
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		3e-17
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		3e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-17
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-12
2j49_A	148	Crystal Structure Of Yeast Taf5 N-Terminal Domain L		1e-16
2nxp_A	156	Structure Of Ntd2 Domain Of The Human Taf5 Subunit		3e-15
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		7e-15
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-14
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-14
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-14
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-14
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-14
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		4e-14
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-10
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-13
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		4e-13
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		3e-12
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-12
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-09
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		6e-12
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-11
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-10
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-07
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-10
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-10
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-07
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		6e-10
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-09
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-09
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-06
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		5e-09
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		8e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-08
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		3e-08
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		3e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		4e-08
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		3e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-06
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		4e-06
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		7e-06
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		1e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		4e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		2e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 121/200 (60%), Gaps = 6/200 (3%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHY 477
           GHS  V+  +FSP G  I S+S D T++LW    N  L+    GH+  VW V F+P G  
Sbjct: 137 GHSSSVWGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSSVWGVAFSPDGQT 194
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
            AS+S D+T ++W+ +  Q L+ + GH S V  V +  +   IA+ S DKTV+LW+  +G
Sbjct: 195 IASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNG 252
Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
           + ++   GH S +  +A  PDG+ +AS  +D T+ +W+  +G+ +  L GH+S VW +A+
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF 311
Query: 598 SCEGSLLASGSADCTVKLWD 617
           S +G  +AS S D TVKLW+
Sbjct: 312 SPDGQTIASASDDKTVKLWN 331

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 117/246 (47%), Gaps = 32/246 (13%)
Query: 406 GPNGRKR-----------SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA 454
           GP G+KR            Y L  GH  PV    F P+   ++S+S D TI++W  +   
Sbjct: 83  GPLGQKRDPKEWIPRPPEKYAL-SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD 141
Query: 455 NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH 514
                KGH   V D+ F+  G   AS S D T ++W     + +R M GH  +V  V   
Sbjct: 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 201
Query: 515 INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574
            N ++I + S DKT+++W+V +G CV+ F GHR  +  +  + DG  +AS   D T+ +W
Sbjct: 202 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 575 DLASGRCVTPLMGHTSCVWTLAYSCE--------------------GSLLASGSADCTVK 614
            +A+  C   L  H   V  ++++ E                    G  L SGS D T+K
Sbjct: 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 615 LWDVTT 620
           +WDV+T
Sbjct: 322 MWDVST 327

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 4/238 (1%)
Query: 391 GLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
           G  G + T  +   + PN   + +TL  GH+  V S  FSP G+++ SSSAD  I++W  
Sbjct: 1   GAMGSSATQSKPTPVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 58
Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
                     GH   + DV ++   +   S+S D+T +IW +   + L+ + GH + V C
Sbjct: 59  YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 118
Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
             ++   N I +GS D++VR+WDV +G+C++    H   + ++  + DG  + S   DG 
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 571 IMMWDLASGRCVTPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
             +WD ASG+C+  L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 235

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 145 G---------------KCLKTLPAHSDPVSAVHFNR 165

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  122 bits (305), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 28  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 87
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 88  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 251

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 161 G---------------KCLKTLPAHSDPVSAVHFNR 181

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 30  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 89
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 90  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 149
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 150 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 210 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 253

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 43  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 163 G---------------KCLKTLPAHSDPVSAVHFNR 183

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 4/238 (1%)
Query: 391 GLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
           G  G + T  +   + PN   + +TL  GH+  V S  FSP G+++ SSSAD  I++W  
Sbjct: 1   GPLGSSATQSKPTPVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 58
Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
                     GH   + DV ++   +   S+S D+T +IW +   + L+ + GH + V C
Sbjct: 59  YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 118
Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
             ++   N I +GS D++VR+WDV +G+C++    H   + ++  + DG  + S   DG 
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 571 IMMWDLASGRCVTPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
             +WD ASG+C+  L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 235

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 145 G---------------KCLKTLPAHSDPVSAVHFNR 165

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 12  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 71
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 72  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 235

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 145 G---------------KCLKTLPAHSDPVSAVHFNR 165

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 23  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 82
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 83  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 142
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 143 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 203 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 246

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 96  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 156 G---------------KCLKTLPAHSDPVSAVHFNR 176

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 6   PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 65
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 66  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 229

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 139 G---------------KCLKTLPAHSDPVSAVHFNR 159

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 6   PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 65
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 66  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 229

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 139 G---------------KCLKTLPAHSDPVSAVHFNR 159

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 2   PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 61
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 62  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 121
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 122 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 182 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 225

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 75  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 135 G---------------KCLKTLPAHSDPVSAVHFNR 155

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 7   PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 66
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 67  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 126
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 127 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 187 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 230

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 80  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 140 G---------------KCLKTLPAHSDPVSAVHFNR 160

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 11  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 70
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 71  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 130
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 131 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 191 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 234

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 84  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 144 G---------------KCLKTLPAHSDPVSAVHFNR 164

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 4/226 (1%)
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           + + PN   + +TL  GH+  V S  FSP G+++ SSSAD  I++W            GH
Sbjct: 10  EFVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
              + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
           GS D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 583 TPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
             L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 232

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 142 G---------------KCLKTLPAHSDPVSAVHFNR 162

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 4/226 (1%)
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           + + PN   + +TL  GH+  V S  FSP G+++ SSSAD  I++W            GH
Sbjct: 10  EFVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
              + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
           GS D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 583 TPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
             L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 232

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 142 G---------------KCLKTLPAHSDPVSAVHFNR 162

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 5/227 (2%)
Query: 405 IGPNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG 461
           +G    K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            G
Sbjct: 3   LGSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 62
Query: 462 HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIA 521
           H   + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I 
Sbjct: 63  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581
           +GS D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Query: 582 VTPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
           +  L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 183 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 228

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 78  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 138 G---------------KCLKTLPAHSDPVSAVHFNR 158

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTLY---QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 9   PTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 232

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 84/156 (53%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                             LKTLP  S PV ++   R
Sbjct: 142 G---------------MCLKTLPAHSDPVSAVHFNR 162

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 4/226 (1%)
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           + + PN   + +TL  GH+  V S  FSP G+++ +SSAD  I++W            GH
Sbjct: 10  EFVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH 67
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
              + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
           GS D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 583 TPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
             L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 232

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 84/156 (53%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A  S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                           + LKTLP  S PV ++   R
Sbjct: 142 G---------------KCLKTLPAHSDPVSAVHFNR 162

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTLY---QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 9   PTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D  +KLWD +   K LKT
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKT 232

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 84/156 (53%), Gaps = 15/156 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656
                             LKTLP  S PV ++   R
Sbjct: 142 G---------------MCLKTLPAHSDPVSAVHFNR 162

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 139/299 (46%), Gaps = 29/299 (9%)
Query: 363 GSLVAGGFSDSSLKVWDMAKLGQ--QAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420
           G+ +  G  D++LKVW  A  G+  + +     G   +  R++II      R+  ++   
Sbjct: 129 GNRIVSGSDDNTLKVWS-AVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 187
Query: 421 SGPVYSASFSPLGDF---------ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF 471
           +G      +               ++S S D T+R+W  +    L    GH   V  VQ+
Sbjct: 188 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
           +  G    S ++D   ++W  +    L  + GH + V  ++   +  ++ +GS D ++R+
Sbjct: 248 D--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRV 303
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---H 588
           WDV +G C+    GH+S  L+  M      + SG+ D T+ +WD+ +G+C+  L G   H
Sbjct: 304 WDVETGNCIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV--LKTEEKSGTN----RLRSLKT 641
            S V  L ++   + + + S D TVKLWD+ T   +  L T E  G+     R+R+  T
Sbjct: 362 QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 418

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 137/310 (44%), Gaps = 63/310 (20%)
Query: 333 HLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL 392
           +L++++ PS   Y        +     S DG  +A G  D  +++WD+            
Sbjct: 113 NLNTSSSPSSDLY--------IRSVCFSPDGKFLATGAEDRLIRIWDI------------ 152
Query: 393 QGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL 452
             EN              ++   + QGH   +YS  + P GD ++S S D T+R+W  + 
Sbjct: 153 --EN--------------RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 453 NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWS------MDRIQPLRIMA-GH 504
               +     +  V  V  +P  G Y A+ S DR  R+W       ++R+        GH
Sbjct: 197 GQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 255
Query: 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDV------------SSGECVRIFIGHRSMILS 552
              V  V +  +   + +GS D++V+LW++            +SG C   +IGH+  +LS
Sbjct: 256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315
Query: 553 LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL------LAS 606
           +A + +  Y+ SG +D  ++ WD  SG  +  L GH + V ++A +   SL       A+
Sbjct: 316 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375
Query: 607 GSADCTVKLW 616
           GS DC  ++W
Sbjct: 376 GSGDCKARIW 385

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 93/158 (58%), Gaps = 9/158 (5%)
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
           V F+P G + A+ + DR  RIW ++  + + I+ GH  D+  + +  + + + +GS D+T
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 529 VRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPL-- 585
           VR+WD+ +G+C  + +     + ++A+SP DG+Y+A+G  D  + +WD  +G  V  L  
Sbjct: 189 VRIWDLRTGQC-SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 586 -----MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
                 GH   V+++ ++ +G  + SGS D +VKLW++
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 2/126 (1%)
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
           ++ATG+ D+ +R+WD+ + + V I  GH   I SL   P G  + SG  D T+ +WDL +
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV--LKTEEKSGTNRL 636
           G+C   L              +G  +A+GS D  V++WD  T   V  L +E +SGT   
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 256
Query: 637 RSLKTL 642
            S+ ++
Sbjct: 257 DSVYSV 262

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 132/307 (42%), Gaps = 49/307 (15%)
Query: 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409
           T  G+ C  +  D   +  G  D+++K+WD   L  + + +G                  
Sbjct: 132 TSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG------------------ 171
Query: 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDV 469
                     H+G V    +      I++ S+D+T+R+W       L     H   V  +
Sbjct: 172 ----------HTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219
Query: 470 QFNPQGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
           +FN       + S DR+  +W M     I   R++ GH + V+ V    +  YI + S D
Sbjct: 220 RFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV--DFDDKYIVSASGD 275
Query: 527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586
           +T+++W+ S+ E VR   GH+  I  L      R + SG  D TI +WD+  G C+  L 
Sbjct: 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE 333
Query: 587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 646
           GH   V  + +  +   + SG+ D  +K+WD+  +   L     +GT     L+TL   S
Sbjct: 334 GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA---LDPRAPAGT---LCLRTLVEHS 385
Query: 647 TPVYSLQ 653
             V+ LQ
Sbjct: 386 GRVFRLQ 392

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 115/239 (48%), Gaps = 9/239 (3%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
           GHS  V     S  G F LS S D  +RLW      +   + GH   V  V F+      
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAG---HLSDVDCVRWHINC--NYIATGSSDKTVRLWD 533
            S+S DRT ++W+        I  G   H   V CVR+  N     I + S DKTV++W+
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW 593
           +S+ +      GH   + ++A+SPDG   ASG +DG +++WDLA G+ +  L  + S + 
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIH 606
Query: 594 TLAYSCEGSLLASGSADCTVKLWDVTTSTKV--LKTEEKSGTNRLRSLKTLPTKSTPVY 650
            L +S     L + + +  +K+WD+ + + V  LK + K+   +  +     TK   +Y
Sbjct: 607 ALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 516 NCNYIATGSSDKTVRLW-----DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
           N + I + S DK++ LW     D + G   R   GH   +  + +S DG++  SG  DG 
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 630
           + +WDLA+G      +GHT  V ++A+S +   + S S D T+KLW+     K   +E  
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG 513
Query: 631 SG 632
            G
Sbjct: 514 EG 515

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 102/199 (51%), Gaps = 10/199 (5%)
Query: 428 SFSPLGDFILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNPQGHYFASSSHD 484
           +++P G  + S   D  IR+W T+ ++ +   V  +GH   V  V ++P G+Y AS+S D
Sbjct: 23  AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 485 RTARIW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---EC 539
            T  IW  + D  + +  + GH ++V  V W  + N +AT S DK+V +W+V      EC
Sbjct: 83  ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW--DLASGRCVTPLMGHTSCVWTLAY 597
           V +   H   +  +   P    +AS   D T+ ++  +     C   L GH S VW+LA+
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202
Query: 598 SCEGSLLASGSADCTVKLW 616
              G  LAS S D TV++W
Sbjct: 203 DPSGQRLASCSDDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 513 WHINCNYIATGSSDKTVRLWDV--SSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDG 569
           W+     +A+   D+ +R+W     S  C  +   GH+  +  +A SP G Y+AS   D 
Sbjct: 24  WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 570 TIMMW--DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           T  +W  +     CVT L GH + V ++A++  G+LLA+ S D +V +W+V
Sbjct: 84  TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134

>pdb|2J4B|A Chain A, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N- Terminal Domain Length = 138

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
Query: 68  QDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMM 127
           +  Y  L++W   SLDL+K++LL +LYP+FIH + DL+ +    EA+ FF  +R DH   
Sbjct: 9   ETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDH-YN 67
Query: 128 HLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIIN 187
              ++++ E + +  H+ E  FA++ ++SK ++ + +Y+++LL+ +L +   T +L I+N
Sbjct: 68  KSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILN 127
Query: 188 ERINFQVSPG 197
           + ++ +V  G
Sbjct: 128 QHLDIKVYVG 137

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 101/241 (41%), Gaps = 27/241 (11%)
Query: 401 REDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK 460
           R + +G    K   TL +GH   V    +      I+SSS D  + +W +         K
Sbjct: 45  RVEALGQFVMKTRRTL-KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS-----FTTNK 98
Query: 461 GHNYP-----VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI 515
            H        V    + P G   A    D    ++ +   +   + A   S    V  H 
Sbjct: 99  EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKS----VAMHT 154
Query: 516 N----CNY------IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD--GRYMA 563
           N    C++      I T S D T  LWDV SG+ ++ F GH + +L L ++P   G    
Sbjct: 155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214
Query: 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
           SG  D   M+WD+ SG+CV     H S V ++ Y   G   ASGS D T +L+D+    +
Sbjct: 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274
Query: 624 V 624
           V
Sbjct: 275 V 275

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 13/213 (6%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
           +GH+G V S A+ +   + +LS+S D T+  W       K    +  +KGH++ V D   
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
              G Y  S+S D+T R+W +   +  +   GH SDV  V      + I +GS DKT+++
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
           W +  G+C+   +GH   +  + + P      D   + S   D  +  W+L   +     
Sbjct: 134 WTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           +GH S + TL  S +G+L+AS   D  + LW++
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 13/213 (6%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLWS-----TKLNANLVCYKGHNYPVWDVQF 471
           +GH+G V S A+ +   + +LS+S D T+  W       K    +  +KGH++ V D   
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
              G Y  S+S D+T R+W +   +  +   GH SDV  V      + I +GS DKT+++
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
           W +  G+C+   +GH   +  + + P      D   + S   D  +  W+L   +     
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           +GH S + TL  S +G+L+AS   D  + LW++
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 13/213 (6%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
           +GH+G V S A+ +   + +LS+S D T+  W       K    +  +KGH++ V D   
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
              G Y  S+S D+T R+W +   +  +   GH SDV  V      + I +GS DKT+++
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
           W +  G+C+   +GH   +  + + P      D   + S   D  +  W+L   +     
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           +GH S + TL  S +G+L+AS   D  + LW++
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 13/213 (6%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLWS-----TKLNANLVCYKGHNYPVWDVQF 471
           +GH+G V S A+ +   + +LS+S D T+  W       K    +  +KGH++ V D   
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
              G Y  S+S D+T R+W +   +  +   GH SDV  V      + I +GS DKT+++
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
           W +  G+C+   +GH   +  + + P      D   + S   D  +  W+L   +     
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           +GH S + TL  S +G+L+AS   D  + LW++
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 13/213 (6%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLWS-----TKLNANLVCYKGHNYPVWDVQF 471
           +GH+G V S A+ +   + +LS+S D T+  W       K    +  +KGH++ V D   
Sbjct: 8   EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 67
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
              G Y  S+S D+T R+W +   +  +   GH SDV  V      + I +GS DKT+++
Sbjct: 68  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 127
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
           W +  G+C+   +GH   +  + + P      D   + S   D  +  W+L   +     
Sbjct: 128 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 186
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           +GH S + TL  S +G+L+AS   D  + LW++
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 219

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 13/213 (6%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
           +GH+G V S A+ +   + +LS+S D T+  W       K    +  +KGH++ V D   
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
              G Y  S+S D+T R+W +   +  +   GH SDV  V      + I +GS DKT+++
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
           W +  G+C+   +GH   +  + + P      D   + S   D  +  W+L   +     
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           +GH S + TL  S +G+L+AS   D  + LW++
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 30/224 (13%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGH 476
           GH G V++  ++  G  ++S S D T+R+W  K       ++GHN  V   D+       
Sbjct: 160 GHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 477 YFASSSHDRTARIWSM-----------DRIQPL------------RIMAGHLSDVDCVRW 513
           Y  + S D T  +W +           +   PL             ++ GH++ V  V  
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 278
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
           H   N + +GS D T+ +WDV+  +C+ I  GH   I S     + +   S   D TI +
Sbjct: 279 H--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
           WDL +G  +  L GHT+ V  L  S     L S +AD +++ WD
Sbjct: 337 WDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWD 378

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL 604
           GH + +++     D  Y+ +G +D  I ++D  + + +  L GH   VW L Y+  G +L
Sbjct: 119 GHMTSVITCLQFEDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGIL 176
Query: 605 ASGSADCTVKLWDV 618
            SGS D TV++WD+
Sbjct: 177 VSGSTDRTVRVWDI 190

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 13/192 (6%)
Query: 406 GPNGRKRS----YTL----YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV 457
           GPN  + S    Y L     +GHS  V   + S  G+F +S+S D ++RLW+ +      
Sbjct: 44  GPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQY 103
Query: 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWH- 514
            + GH   V  V F+P      S   D   R+W++ + + +  ++   H   V CVR+  
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSP 162
Query: 515 -INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
            ++   I +G  D  V++WD+++G  V    GH + + S+ +SPDG   AS D+DG   +
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL 222
Query: 574 WDLASGRCVTPL 585
           WDL  G  ++ +
Sbjct: 223 WDLTKGEALSEM 234

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
           +GH+  V DV  +  G++  S+S D + R+W++   Q      GH  DV  V +  +   
Sbjct: 64  EGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQ 123
Query: 520 IATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSP--DGRYMASGDEDGTIMMWD 575
           I +G  D  +R+W+V  GEC+       H   +  +  SP  D   + SG  D  + +WD
Sbjct: 124 IVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619
           LA+GR VT L GHT+ V ++  S +GSL AS   D   +LWD+T
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 9/155 (5%)
Query: 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556
           P R + GH + V  V    N N+  + S D ++RLW++ +G+C   F+GH   +LS+A S
Sbjct: 59  PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLM--GHT---SCVWTLAYSCEGSLLASGSADC 611
           PD R + SG  D  + +W++  G C+  L    HT   SCV   + S +  ++ SG  D 
Sbjct: 119 PDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCV-RFSPSLDAPVIVSGGWDN 176
Query: 612 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 646
            VK+WD+ T    L T+ K  TN + S+   P  S
Sbjct: 177 LVKVWDLATGR--LVTDLKGHTNYVTSVTVSPDGS 209

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 28/210 (13%)
Query: 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493
           +++++ + D  IR++ +     L+   GH+  VW +++   G    S S DRT R+W + 
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIK 191
Query: 494 RIQPLRIMAGHLSDVDC--VRWHINCNYIATGSSDKTVRLWDV-------SSGE------ 538
           +     +  GH S V C  +  + N  YI TGS D T+ +W +         GE      
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 539 ----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
                      V +  GH + + +  +S  G  + SG  D T+++WD+A  +C+  L GH
Sbjct: 252 VFHTPEENPYFVGVLRGHXASVRT--VSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGH 309
Query: 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           T  +++  Y  E     S S D T+++WD+
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIWDL 339

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL 604
           GH + +++     D  Y+ +G +D  I ++D  + + +  L GH   VW L Y+  G +L
Sbjct: 119 GHXTSVITCLQFEDN-YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGIL 176
Query: 605 ASGSADCTVKLWDV 618
            SGS D TV++WD+
Sbjct: 177 VSGSTDRTVRVWDI 190

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      +LS+S D  + +W +     +      
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
           G C     GH S +  + +   G+  A+GS D T +L+D+    +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      +LS+S D  + +W +     +      
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
           G C     GH S +  + +   G+  A+GS D T +L+D+    +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      ++S+S D  + +W +     +      
Sbjct: 48  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 107
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 108 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 166
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
           G C     GH S +  + +   G+  A+GS D T +L+D+    +++
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 273

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      ++S+S D  + +W +     +      
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
           G C     GH S +  + +   G+  A+GS D T +L+D+    +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      ++S+S D  + +W +     +      
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
           G C     GH S +  + +   G+  A+GS D T +L+D+    +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 128/322 (39%), Gaps = 32/322 (9%)
Query: 346  TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ-QAVSSGLQGENDTTPRED- 403
            T     N +N    S D  L+A   +D +L++WD+    + ++++      +   P ED 
Sbjct: 738  TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Query: 404  ----------------IIGPNGRKRSY---------TLYQGHSGPVYSASFSPLGDFILS 438
                            I+    +   +          ++ GH   +    FSP     + 
Sbjct: 798  EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857
Query: 439  SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498
            + +   + LW+      +   +GH   V  V F+P G  F ++S D+T R+W   ++   
Sbjct: 858  ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
Query: 499  RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558
              +     ++D V        +A  +    +R   + +G+  +I     + +    +SP 
Sbjct: 918  SAIVLK-QEIDVVFQENETMVLAVDN----IRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 972
Query: 559  GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
              Y+A GDEDG I + +L + R  +  +GH   V  + ++ +G  L S S D  +++W+ 
Sbjct: 973  LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032
Query: 619  TTSTKVLKTEEKSGTNRLRSLK 640
             T   V     +      R L+
Sbjct: 1033 QTGDYVFLQAHQETVKDFRLLQ 1054

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 114/266 (42%), Gaps = 25/266 (9%)
Query: 407  PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
            PN R  S  +  GH   V    F+  G  ++SSS D+ I++W+ +   + V  + H   V
Sbjct: 991  PNNRVFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ-TGDYVFLQAHQETV 1047
Query: 467  WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
             D +   Q     S S D T ++W++   +  R    H   V       +    ++ S+D
Sbjct: 1048 KDFRL-LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1106
Query: 527  KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV---T 583
            KT ++W       +    GH   +   A S DG  +A+GD++G I +W+++ G+ +    
Sbjct: 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA 1166
Query: 584  PL------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLR 637
            P+        H   V  + +S +   L S      +K W+V T     +T   +GTN L+
Sbjct: 1167 PISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATGDSS-QTFYTNGTN-LK 1222
Query: 638  SLKTLPTKSTPV--------YSLQVL 655
             +   P   T V        Y LQVL
Sbjct: 1223 KIHVSPDFRTYVTVDNLGILYILQVL 1248

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA 605
           H   +     S DG+ +AS   D T+ ++   +G  +  +  H   V   A+S + S +A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 606 SGSADCTVKLWDVTTSTKVLKTEEKS 631
           + SAD  VK+WD  T   V   +E S
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHS 699

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 128/322 (39%), Gaps = 32/322 (9%)
Query: 346  TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ-QAVSSGLQGENDTTPRED- 403
            T     N +N    S D  L+A   +D +L++WD+    + ++++      +   P ED 
Sbjct: 745  TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 804
Query: 404  ----------------IIGPNGRKRSY---------TLYQGHSGPVYSASFSPLGDFILS 438
                            I+    +   +          ++ GH   +    FSP     + 
Sbjct: 805  EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 864
Query: 439  SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498
            + +   + LW+      +   +GH   V  V F+P G  F ++S D+T R+W   ++   
Sbjct: 865  ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 924
Query: 499  RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558
              +     ++D V        +A  +    +R   + +G+  +I     + +    +SP 
Sbjct: 925  SAIVLK-QEIDVVFQENETMVLAVDN----IRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 979
Query: 559  GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
              Y+A GDEDG I + +L + R  +  +GH   V  + ++ +G  L S S D  +++W+ 
Sbjct: 980  LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1039
Query: 619  TTSTKVLKTEEKSGTNRLRSLK 640
             T   V     +      R L+
Sbjct: 1040 QTGDYVFLQAHQETVKDFRLLQ 1061

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 114/266 (42%), Gaps = 25/266 (9%)
Query: 407  PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
            PN R  S  +  GH   V    F+  G  ++SSS D+ I++W+ +   + V  + H   V
Sbjct: 998  PNNRVFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ-TGDYVFLQAHQETV 1054
Query: 467  WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
             D +   Q     S S D T ++W++   +  R    H   V       +    ++ S+D
Sbjct: 1055 KDFRL-LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1113
Query: 527  KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV---T 583
            KT ++W       +    GH   +   A S DG  +A+GD++G I +W+++ G+ +    
Sbjct: 1114 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA 1173
Query: 584  PL------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLR 637
            P+        H   V  + +S +   L S      +K W+V T     +T   +GTN L+
Sbjct: 1174 PISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATGDSS-QTFYTNGTN-LK 1229
Query: 638  SLKTLPTKSTPV--------YSLQVL 655
             +   P   T V        Y LQVL
Sbjct: 1230 KIHVSPDFRTYVTVDNLGILYILQVL 1255

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA 605
           H   +     S DG+ +AS   D T+ ++   +G  +  +  H   V   A+S + S +A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 606 SGSADCTVKLWDVTTSTKVLKTEEKS 631
           + SAD  VK+WD  T   V   +E S
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHS 706

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 15/213 (7%)
Query: 418 QGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY-------KGHNYPVWDV 469
           +GH+G V   + +P   D ILS+S D TI +W  KL  +   Y       +GH++ V DV
Sbjct: 35  KGHNGWVTQIATTPQFPDMILSASRDKTIIMW--KLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
             +  G +  S S D T R+W +      R   GH  DV  V +  +   I +GS DKT+
Sbjct: 93  VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 530 RLWDVSSGECVRIFI--GHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLASGRCVTPL 585
           +LW+ + G C        H   +  +  SP+     + S   D  + +W+LA+ +  T  
Sbjct: 153 KLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 211
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           +GHT  + T+  S +GSL ASG  D    LWD+
Sbjct: 212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 518 NYIATGSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
           + I + S DKT+ +W ++  E       R   GH   +  + +S DG++  SG  DGT+ 
Sbjct: 52  DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632
           +WDL +G      +GHT  V ++A+S +   + SGS D T+KLW+     K    +++S 
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-YTVQDESH 170
Query: 633 TNRLRSLKTLPTKSTPV 649
           +  +  ++  P  S P+
Sbjct: 171 SEWVSCVRFSPNSSNPI 187

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 109/224 (48%), Gaps = 27/224 (12%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           QGHSG VYS  ++P  ++I+S+S D  + +W+   +      K H   V +  F P G  
Sbjct: 63  QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS 122
Query: 478 FASSSHDRTARIWSM------DRIQPL-RIMAGHLSDVDCVRWHINCNYIA-------TG 523
            A    D    I+++      D   P+ R++ GH        +  +C Y+        TG
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG------YASSCQYVPDQETRLITG 176
Query: 524 SSDKTVRLWDVSSGECVRIF-----IGHRSMILSLAM-SPDGRYMASGDEDGTIMMWDL- 576
           S D+T  LWDV++G+ + IF      GH + +LSL++ S +     SG  D T+ +WDL 
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236
Query: 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + R V    GH   + ++ +  +G    +GS D T +L+D+ T
Sbjct: 237 ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 22/160 (13%)
Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           S +  RTA  ++   +   R + GH   V  + W    N+I + S D  + +W+  + + 
Sbjct: 41  SKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK 100
Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPLMGHT 589
                 H   ++  A +P+G+ +A G  D    +++L+S           R +T   G+ 
Sbjct: 101 THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYA 160
Query: 590 SCVWTLAYSC-----EGSLLASGSADCTVKLWDVTTSTKV 624
           S       SC     + + L +GS D T  LWDVTT  ++
Sbjct: 161 S-------SCQYVPDQETRLITGSGDQTCVLWDVTTGQRI 193

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 15/213 (7%)
Query: 418 QGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY-------KGHNYPVWDV 469
           +GH+G V   + +P   D ILS+S D TI +W  KL  +   Y       +GH++ V DV
Sbjct: 12  KGHNGWVTQIATTPQFPDMILSASRDKTIIMW--KLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
             +  G +  S S D T R+W +      R   GH  DV  V +  +   I +GS DKT+
Sbjct: 70  VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 530 RLWDVSSGECVRIFI--GHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLASGRCVTPL 585
           +LW+ + G C        H   +  +  SP+     + S   D  + +W+LA+ +  T  
Sbjct: 130 KLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 188
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           +GHT  + T+  S +GSL ASG  D    LWD+
Sbjct: 189 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 518 NYIATGSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
           + I + S DKT+ +W ++  E       R   GH   +  + +S DG++  SG  DGT+ 
Sbjct: 29  DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632
           +WDL +G      +GHT  V ++A+S +   + SGS D T+KLW+     K    +++S 
Sbjct: 89  LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-YTVQDESH 147
Query: 633 TNRLRSLKTLPTKSTPV 649
           +  +  ++  P  S P+
Sbjct: 148 SEWVSCVRFSPNSSNPI 164

>pdb|2J49|A Chain A, Crystal Structure Of Yeast Taf5 N-Terminal Domain Length = 148

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 62  DGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFR 121
           + P  Y   YS L++W  SSL++YK EL +++YP+FI+ F++LVAK  +  AR FF+ F 
Sbjct: 5   NAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVY-ARRFFDRFS 63
Query: 122 EDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS-- 179
            D +  H  ++ +L  V S  H++E E A + +  K  I + + +  LLL +L++ +S  
Sbjct: 64  PDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIG 123
Query: 180 -TKMLGIINERIN 191
            + ++ +IN+ ++
Sbjct: 124 GSLIISVINQHLD 136

>pdb|2NXP|A Chain A, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of Tfiid Length = 156

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 42  IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCF 101
           + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +
Sbjct: 3   VAVEDQPDVSAVLSAYNQQGD-PTXYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHXY 61
Query: 102 MDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIK 161
           ++LV   H  EA++FF  F  D E  +  DL+ L  +    H +  E     R SK  ++
Sbjct: 62  LELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHXKGNETXLDFRTSKFVLR 121
Query: 162 ICQYSYELLLQYLHKTQSTKMLGIINERI 190
           I + SY+LL ++L + Q+ ++  I+ E +
Sbjct: 122 ISRDSYQLLKRHLQEKQNNQIWNIVQEHL 150

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 7/227 (3%)
Query: 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482
           PV +  F    ++I+  S D  IR+++      +V ++ H   +  +  +P   Y  S S
Sbjct: 57  PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 483 HDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVS-SGEC 539
            D T ++W+ +    L +   GH   V CV ++  + +  A+G  D+TV++W +  S   
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 540 VRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
             +  G    +  +     PD  YM +  +D TI +WD  +  CV  L GH S V    +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644
                ++ SGS D T+K+W+ +T  KV KT    G  R   + T PT
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSST-YKVEKT-LNVGLERSWCIATHPT 281

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 7/227 (3%)
Query: 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482
           PV +  F    ++I+  S D  IR+++      +V ++ H   +  +  +P   Y  S S
Sbjct: 57  PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 483 HDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGEC 539
            D T ++W+ +    L +   GH   V CV ++  + +  A+G  D+TV++W +  S   
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 540 VRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
             +  G    +  +     PD  YM +  +D TI +WD  +  CV  L GH S V    +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644
                ++ SGS D T+K+W+ +T  KV KT    G  R   + T PT
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRW-HI 515
           GH+  V  +++ P G + AS  +D    +W     +    PL+    H   V  V W   
Sbjct: 239 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 516 NCNYIATG--SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTI 571
             N +ATG  +SD+ +R+W+V SG C+     H S + S+  SP  + + SG       +
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 357
Query: 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
           ++W   +   V  L GHTS V +L  S +G+ +AS +AD T++LW
Sbjct: 358 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRW-HI 515
           GH+  V  +++ P G + AS  +D    +W     +    PL+    H   V  V W   
Sbjct: 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 516 NCNYIATG--SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTI 571
             N +ATG  +SD+ +R+W+V SG C+     H S + S+  SP  + + SG       +
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 346
Query: 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
           ++W   +   V  L GHTS V +L  S +G+ +AS +AD T++LW
Sbjct: 347 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 7/227 (3%)
Query: 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482
           PV +  F    ++I+  S D  IR+++      +V ++ H   +  +  +P   Y  S S
Sbjct: 57  PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 483 HDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGEC 539
            D T ++W+ +    L +   GH   V CV ++  + +  A+G  D+TV++W +  S   
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 540 VRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
             +  G    +  +     PD  YM +  +D TI +WD  +  CV  L GH S V    +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644
                ++ SGS D T+K+W+ +T  KV KT    G  R   + T PT
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 7/227 (3%)
Query: 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482
           PV +  F    ++I+  S D  IR+++      +V ++ H   +  +  +P   Y  S S
Sbjct: 57  PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 483 HDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGEC 539
            D T ++W+ +    L +   GH   V CV ++  + +  A+G  D+TV++W +  S   
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 540 VRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
             +  G    +  +     PD  YM +  +D TI +WD  +  CV  L GH S V    +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644
                ++ SGS D T+K+W+ +T  KV KT    G  R   + T PT
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 96/207 (46%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           +GH   V S   S       SSS D  IRLW  +    +          W + F+P   Y
Sbjct: 77  EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 136
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
            A+ +H     I+ ++  +    +      +  + +  +  Y+A+G+ D  + ++D+++G
Sbjct: 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 196
Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
           + +    GH   I SL  SPD + + +  +DG I ++D+        L GH S V  +A+
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKV 624
             + +   S S+D +VK+WDV T T V
Sbjct: 257 CPDDTHFVSSSSDKSVKVWDVGTRTCV 283

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 8/190 (4%)
Query: 460 KGHNYPVWDVQFNPQ----GHYFASSSHDRTARIWSM--DRIQPLRIMAGHLSDVDCVRW 513
           + H+  +W V +            + S D   ++W    +R+     + GH   V  V  
Sbjct: 29  QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 88
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
                  A+ S D  +RLWD+ +G+ ++          +LA SPD +Y+A+G   G + +
Sbjct: 89  SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 148
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT 633
           + + SG+    L      + ++AYS +G  LASG+ D  + ++D+ T  K+L T E    
Sbjct: 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG-KLLHTLEGHAM 207
Query: 634 NRLRSLKTLP 643
             +RSL   P
Sbjct: 208 -PIRSLTFSP 216

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRW-HI 515
           GH+  V  +++ P G + AS  +D    +W     +    PL+    H   V  V W   
Sbjct: 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207
Query: 516 NCNYIATG--SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTI 571
             N +ATG  +SD+ +R+W+V SG C+     H S + S+  SP  + + SG       +
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 266
Query: 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
           ++W   +   V  L GHTS V +L  S +G+ +AS +AD T++LW
Sbjct: 267 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 24/224 (10%)
Query: 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVW 467
           +S  LY+     ++S  FS     + + S D  I+L S K +     +++    H   + 
Sbjct: 8   KSLKLYKE---KIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR 62
Query: 468 DVQFNPQGHYFASSSHDRTARIW----SMDR---IQPLRIMAGHLSDVDCVRWHINCNYI 520
            V + P     A+ S D T  IW    S DR   +  L I+ GH ++V  V W  +  Y+
Sbjct: 63  SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL 122
Query: 521 ATGSSDKTVRLWDVS-SG---ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
           AT S DK+V +W+   SG   EC+ +   H   +  +   P    +AS   D T+ +W  
Sbjct: 123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182
Query: 577 ASG--RCVTPLMGHTSCVWTLAYS-CEGSL-LASGSADCTVKLW 616
                 CV  L GH   VW+  +   EG   L SGS D TV++W
Sbjct: 183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 16/216 (7%)
Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWS-TKLNANLVCYKGH 462
           +   +G    YTL  GH G V S SF      ++S S D T ++W    L  NL   + H
Sbjct: 88  LFATSGEDPLYTLI-GHQGNVCSLSFQD--GVVISGSWDKTAKVWKEGSLVYNL---QAH 141
Query: 463 NYPVWD---VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
           N  VWD   V F+   + F ++S D+T ++W  D++  ++  +G  +DV      ++  +
Sbjct: 142 NASVWDAKVVSFSE--NKFLTASADKTIKLWQNDKV--IKTFSGIHNDVVRHLAVVDDGH 197
Query: 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
             + S+D  ++L D  +G+ +R + GH S +  + + P+G  ++ G ED T+ +W   +G
Sbjct: 198 FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENG 256
Query: 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615
                +      +W++     G ++  GS+D  V++
Sbjct: 257 SLKQVITLPAISIWSVDCXSNGDIIV-GSSDNLVRI 291

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 28/240 (11%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
           GH+  V   + S    F +SSS D T+RLW  +       + GH   V+ V F+P     
Sbjct: 74  GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAG----HLSDVDCVRW----------HINCNYIATGS 524
            S+  +R  ++W++  +   +  +     H   V CVR+               Y A+  
Sbjct: 134 LSAGAEREIKLWNI--LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
            D  +++W+ ++ +    F  H S +  L++SP+G+Y+A+G +D  +++WD+ +      
Sbjct: 192 WDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250
Query: 585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK----------VLKTEEKSGTN 634
                S +  +A++ +   +A G+ D  VK++++ T +K          + K E + G N
Sbjct: 251 EFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 7/131 (5%)
Query: 520 IATGSSDKTVRLWDVSSGECVRIF-------IGHRSMILSLAMSPDGRYMASGDEDGTIM 572
           + +GS DKTV +W +   E    F        GH   +  LA+S +  +  S   D T+ 
Sbjct: 42  LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632
           +WDL +G      +GH S V+++A+S +   + S  A+  +KLW++    K    E+++ 
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 633 TNRLRSLKTLP 643
           ++ +  ++  P
Sbjct: 162 SDWVSCVRYSP 172

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 109/264 (41%), Gaps = 52/264 (19%)
Query: 420 HSGPVYSASFSPL-GDFILSSSADTTIRLW-------STKLNANLVCYKG------HNYP 465
           H G + +    P+ G ++LS  +D  I L+        +      VC  G      H Y 
Sbjct: 42  HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 466 VWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM-------AGHLSDVD---CVRWH 514
           V  VQ+ P     F SSS D+T ++W  + +Q   +        + H+S V    C+   
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCL--- 158
Query: 515 INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY-MASGDEDGTIMM 573
                +A G+    V+L D+ SG C  I  GHR  IL+++ SP   Y +A+   D  + +
Sbjct: 159 -----VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKL 213
Query: 574 WDL--ASGRCVTPL---------------MGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
           WD+  ASG C+  L                 H   V  L ++ +G  L +   D  ++LW
Sbjct: 214 WDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
Query: 617 DVTTSTKVLKTEEKSGTNRLRSLK 640
           + +     L    K   N  + LK
Sbjct: 273 NSSNGENTLVNYGKVCNNSKKGLK 296

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 19/236 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-----LNANLVCYKG 461
           P G      +Y  HS     A  SP G +  S      +R+W T      L   +  + G
Sbjct: 45  PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG 104
Query: 462 HNYPVWDVQFNPQGHYFAS--SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
              PV D+ ++ +    A+     +R   ++  D       + G    ++ V +  +  +
Sbjct: 105 ---PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 161
Query: 520 -IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I +GS D TV +++    +    F  H   + S+  +PDG   AS   DGTI++++   
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 579 GRCVTPL-------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
           G             + H+  V+ L +S +G+ +AS SAD T+K+W+V T  KV KT
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKT 276

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
           P+G  +     +GH    Y  S++P L  ++LS+S D TI LW           ++A  +
Sbjct: 169 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 228
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
            + GH   V DV ++      F S + D+   IW     +  +P   +  H ++V+C+ +
Sbjct: 229 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 287
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
           +    +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  
Sbjct: 288 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 347
Query: 571 IMMWDLA 577
           + +WDL+
Sbjct: 348 LHVWDLS 354

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 13/136 (9%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
           QP   + GH  +   + W+ N N Y+ + S D T+ LWD+++        +   IF GH 
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 233
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS- 602
           +++  +A          S  +D  +M+WD  +     P   +  HT+ V  L+++     
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 293
Query: 603 LLASGSADCTVKLWDV 618
           +LA+GSAD TV LWD+
Sbjct: 294 ILATGSADKTVALWDL 309

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
           P+G  +     +GH    Y  S++P L  ++LS+S D TI LW           ++A  +
Sbjct: 167 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 226
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
            + GH   V DV ++      F S + D+   IW     +  +P   +  H ++V+C+ +
Sbjct: 227 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
           +    +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  
Sbjct: 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345
Query: 571 IMMWDLA 577
           + +WDL+
Sbjct: 346 LHVWDLS 352

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 13/136 (9%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
           QP   + GH  +   + W+ N N Y+ + S D T+ LWD+++        +   IF GH 
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS- 602
           +++  +A          S  +D  +M+WD  +     P   +  HT+ V  L+++     
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291
Query: 603 LLASGSADCTVKLWDV 618
           +LA+GSAD TV LWD+
Sbjct: 292 ILATGSADKTVALWDL 307

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
           P+G  +     +GH    Y  S++P L  ++LS+S D TI LW           ++A  +
Sbjct: 171 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 230
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
            + GH   V DV ++      F S + D+   IW     +  +P   +  H ++V+C+ +
Sbjct: 231 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 289
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
           +    +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  
Sbjct: 290 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 349
Query: 571 IMMWDLA 577
           + +WDL+
Sbjct: 350 LHVWDLS 356

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 13/136 (9%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
           QP   + GH  +   + W+ N N Y+ + S D T+ LWD+++        +   IF GH 
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS- 602
           +++  +A          S  +D  +M+WD  +     P   +  HT+ V  L+++     
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 295
Query: 603 LLASGSADCTVKLWDV 618
           +LA+GSAD TV LWD+
Sbjct: 296 ILATGSADKTVALWDL 311

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWST-------KLNANLVC 458
           P+G        +GH    Y  S++P L   +LS+S D TI LW         K+      
Sbjct: 163 PSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTI 222
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
           + GH   V DV ++      F S + D+   IW   S +  +P   +  H ++V+C+ ++
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
               +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  +
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 572 MMWDLA 577
            +WDL+
Sbjct: 343 NVWDLS 348

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 15/132 (11%)
Query: 501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS----GECV---RIFIGHRSMI-- 550
           + GH  +   + W+ N + ++ + S D T+ LWD+S+    G+ V    IF GH +++  
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS-LLAS 606
           +S  +  +  + +  D D  +M+WD  S     P   +  HT+ V  L+++     +LA+
Sbjct: 233 VSWHLLHESLFGSVAD-DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 607 GSADCTVKLWDV 618
           GSAD TV LWD+
Sbjct: 292 GSADKTVALWDL 303

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASF-SPLGDFILSSSADTTIRLWST-------KLNANLVC 458
           P+G        +GH    Y  S+ S L   +LS+S D T+ LW         K+      
Sbjct: 165 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI 224
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
           + GH+  V DV ++      F S + D+   IW   S    +P  ++  H ++V+C+ ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
               +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 572 MMWDLA 577
            +WDL+
Sbjct: 345 NVWDLS 350

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHRSMILS 552
           + GH  +   + W+ N + ++ + S D TV LWD+++G       +   IF GH +++  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 553 LAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS-LLASG 607
           +A          S  +D  + +WD  S     P   +  HT+ V  L+++     +LA+G
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 608 SADCTVKLWDV 618
           SAD TV LWD+
Sbjct: 295 SADKTVALWDL 305

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASF-SPLGDFILSSSADTTIRLWST-------KLNANLVC 458
           P+G        +GH    Y  S+ S L   +LS+S D T+ LW         K+      
Sbjct: 165 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI 224
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
           + GH+  V DV ++      F S + D+   IW   S    +P  ++  H ++V+C+ ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
               +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 572 MMWDLA 577
            +WDL+
Sbjct: 345 NVWDLS 350

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHRSMILS 552
           + GH  +   + W+ N + ++ + S D TV LWD+++G       +   IF GH +++  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 553 LAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS-LLASG 607
           +A          S  +D  +M+WD  S     P   +  HT+ V  L+++     +LA+G
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 608 SADCTVKLWDV 618
           SAD TV LWD+
Sbjct: 295 SADKTVALWDL 305

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 20/179 (11%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
           GH+G ++S        + ++ SAD +I+LW    N   V       PV  V+F+P G+YF
Sbjct: 72  GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS-NGQCVATWKSPVPVKRVEFSPCGNYF 130
Query: 479 AS-----SSHDRTARIWSMDRI-----------QPLRIMAGH--LSDVDCVRWHINCNYI 520
            +       +  +  I+ ++R            +P+  +  H  L       W     YI
Sbjct: 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI 190
Query: 521 ATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
             G  D  +  +DVS+  E V     H   I  +  SPD  Y  +   D    + D+++
Sbjct: 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL 604
           GH   +  +  + +G  + S  +D +  +W   +G  +  L GHT  +W++   C     
Sbjct: 30  GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 605 ASGSADCTVKLWDVT 619
            +GSAD ++KLWDV+
Sbjct: 90  VTGSADYSIKLWDVS 104

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 6/172 (3%)
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
           V+++  G + +    +    I+ ++    LR MAGH + V C+ W  N + +++GS    
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGA 197
Query: 529 VRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587
           +   DV  +   +    GH S +  LA   DG  +ASG  D  + +WD  S         
Sbjct: 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN 257
Query: 588 HTSCVWTLAY-SCEGSLLASGSA--DCTVKLWDVTTSTKVLKTEEKSGTNRL 636
           H + V  +A+   + +LLA+G    D  +  W+  T  +V   +  S    L
Sbjct: 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSL 309

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 29/226 (12%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           Q H   +    F P G+ ++SSS D  +++WS K  +N     GH   V D+    +G  
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 478 FASSSHDRTARIWSM----------------DRIQPLRIMAG--------HLSDVDCVRW 513
             S+S D T R+W                  D +  + +  G          S  + + +
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDEDGT 570
                Y+  G     + + +V S E   I +  +      +++ DG    Y+ +G E+G 
Sbjct: 253 GTYGKYVIAGHVSGVITVHNVFSKEQT-IQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 311
Query: 571 IMMWDLASGRC-VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615
           +  WDL S  C V   + +        Y   G+L  S   D ++KL
Sbjct: 312 LAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL 357

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
           G+++  +++ D +      I   H S I  L   P G  + S  +D  + +W +  G   
Sbjct: 112 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 171
Query: 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
             L+GH + V  +A    G  + S S D T++LW+  T T +
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 213

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 29/226 (12%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           Q H   +    F P G+ ++SSS D  +++WS K  +N     GH   V D+    +G  
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 478 FASSSHDRTARIWSM----------------DRIQPLRIMAG--------HLSDVDCVRW 513
             S+S D T R+W                  D +  + +  G          S  + + +
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDEDGT 570
                Y+  G     + + +V S E   I +  +      +++ DG    Y+ +G E+G 
Sbjct: 256 GTYGKYVIAGHVSGVITVHNVFSKEQT-IQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 314
Query: 571 IMMWDLASGRC-VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615
           +  WDL S  C V   + +        Y   G+L  S   D ++KL
Sbjct: 315 LAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL 360

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
           G+++  +++ D +      I   H S I  L   P G  + S  +D  + +W +  G   
Sbjct: 115 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174
Query: 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
             L+GH + V  +A    G  + S S D T++LW+  T T +
Sbjct: 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 89/238 (37%), Gaps = 51/238 (21%)
Query: 405 IGPNGR-KRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGH 462
           +G  GR  ++  L  GH+ PV   ++ P  D +++S S D T+ +W    +  LV     
Sbjct: 64  LGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIP-DGGLV----- 117
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIA 521
                                        +   +P+  + GH   V  V WH    N + 
Sbjct: 118 -----------------------------LPLREPVITLEGHTKRVGIVAWHPTAQNVLL 148
Query: 522 TGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
           +   D  + +WDV +G  V + +G   H   I S+  S DG  + +   D  + + +   
Sbjct: 149 SAGXDNVILVWDVGTGAAV-LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207
Query: 579 GRCVT----PLMGHTSCVWTLAYSCEGSLLASGSADCT---VKLWDVTTSTKVLKTEE 629
           G  V     P  G         +  EG +L +G +  +   V LWD     + L  +E
Sbjct: 208 GTVVAEKDRPHEGTRPV--HAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 540 VRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLM-------GHTSC 591
           V +  GH + +L +A  P +   +ASG ED T+M+W++  G  V PL        GHT  
Sbjct: 74  VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 592 VWTLAY--SCEGSLLASGSADCTVKLWDVTTSTKVL 625
           V  +A+  + +  LL++G  D  + +WDV T   VL
Sbjct: 134 VGIVAWHPTAQNVLLSAGX-DNVILVWDVGTGAAVL 168

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 540 VRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLM-------GHTSC 591
           V +  GH + +L +A  P +   +ASG ED T+M+W++  G  V PL        GHT  
Sbjct: 74  VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 592 VWTLAY--SCEGSLLASGSADCTVKLWDVTTSTKVL 625
           V  +A+  + +  LL++G  D  + +WDV T   VL
Sbjct: 134 VGIVAWHPTAQNVLLSAG-CDNVILVWDVGTGAAVL 168

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 516 NCNYIATGSSDKTVRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
            C  I  G +  T+ +WD+++    RI            +LA+SPD +   S   DG I 
Sbjct: 109 GCTLIVGGEA-STLSIWDLAA-PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166
Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632
           +WDL +   V    GHT     +  S +G+ L +G  D TV+ WD+    ++   ++   
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL---QQHDF 223
Query: 633 TNRLRSLKTLPT 644
           T+++ SL   PT
Sbjct: 224 TSQIFSLGYCPT 235

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 436 ILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
           IL +S    + LW    N  L+    C   H+  V  V     G    S S D   ++W 
Sbjct: 96  ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 492 MDRIQPLRIMAGHLSDVDCVRW--HINCNYIATGSSDKTVRLWDVSSGECVRIF--IGHR 547
           + +   L     H + V CV    H +  +++  S D  + LWD     C +    IG  
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSC-SEDNRILLWDT---RCPKPASQIGCS 211
Query: 548 S---MILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG-S 602
           +   +  SLA  P        GDE+GT+ + D  S  CV     H+ CV  L +S     
Sbjct: 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVP 271
Query: 603 LLASGSADCTVKLWDVTTS 621
            LAS S DC++ + D + S
Sbjct: 272 FLASLSEDCSLAVLDSSLS 290

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 518 NYIATGSSDKTVRLWDVS-SGECV-RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
           N++  GS    VR W+V  SG+ + +    H   +L +  S DG  + +   D T  MWD
Sbjct: 55  NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114
Query: 576 LASGRCVTPLMGHTSCVWTL------AYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
           L+S + +  +  H + V T+       YSC    + +GS D T+K WD  +S  ++
Sbjct: 115 LSSNQAIQ-IAQHDAPVKTIHWIKAPNYSC----VMTGSWDKTLKFWDTRSSNPMM 165

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 41/222 (18%)
Query: 404 IIGPNGRKRSYTLYQ--------GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN 455
           I GP G    Y + +        GH GP+    F+     +LS+S D T+R+W      +
Sbjct: 222 IPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281
Query: 456 LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR--------IQPLRIMAGHLSD 507
             C+ GH+  +    +        S S D + R+WS+ +        +  + I AG +S 
Sbjct: 282 QNCFYGHSQSIVSASWVGDDKVI-SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ 340
Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILS-LAMSPDGRYMASG 565
                   +    A    D  V ++D+       R   G+R  IL+ L +     Y +S 
Sbjct: 341 --------DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQ 392
Query: 566 DEDGTI-MMWDLASGRCVTPLMGHTSCVWTLAYSC-EGSLLA 605
           D D    + W+ A  +             ++AYS  EGS++A
Sbjct: 393 DNDYIFDLSWNCAGNKI------------SVAYSLQEGSVVA 422

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 86/232 (37%), Gaps = 35/232 (15%)
Query: 419 GHSGPVYSASFS--PLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQ 474
           GH GPV+   ++    G  + S S D  + +W  +    + +  +  H+  V  VQ+ P 
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 475 --GHYFASSSHDRTARIWSMDR---IQPLRIMAGHLSDVDCVRWH-------------IN 516
             G     +S D    +          P+ I+  H   V+   W                
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKE 169
Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFI----GHRSMILSLAMSPD---GRYMASGDEDG 569
                TG +D  V++W  +S     +      GH   +  +A SP      Y+AS  +D 
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 570 TIMMW--DLASGRCVTPLMGHTS---CVWTLAYSCEGSLLASGSADCTVKLW 616
           T ++W  D   G     L+        +W  ++S  G++LA    D  V LW
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	656
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2j49_A	148	Transcription initiation factor TFIID subunit 5; n	100.0
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2j4b_A	138	TAF5, transcription initiation factor TFIID subuni	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.76
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.72
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.72
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.72
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.72
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.69
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.66
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.65
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.62
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.6
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.59
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.58
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.57
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.57
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.53
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.52
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.52
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.52
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.5
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.49
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.49
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.48
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.48
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.47
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.45
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.44
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.43
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.43
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.42
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.42
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.41
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.35
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.33
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.3
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.29
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.25
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.2
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.19
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.18
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.17
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.16
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.11
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.08
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.07
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.06
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.04
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.02
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.01
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.93
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.92
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.92
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.9
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.9
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.88
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.85
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.84
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.83
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.79
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.77
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.77
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.76
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.75
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.75
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.7
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.65
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.64
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.62
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.6
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.55
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.55
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.51
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.49
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.49
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.48
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.47
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.45
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.45
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.44
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.43
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.39
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.38
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.35
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.33
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.33
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.32
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.32
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.27
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.27
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.27
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.26
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.26
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.25
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.22
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.22
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.19
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.18
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.14
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.14
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.14
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.12
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.11
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.11
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.06
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.05
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.0
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.96
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.95
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.92
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.91
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.89
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.86
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.83
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.78
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.77
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.69
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.65
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.64
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.59
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.58
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.54
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.54
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.5
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.49
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.4
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.31
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.31
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.28
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.23
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.22
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.19
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.19
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.18
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.05
3ott_A	758	Two-component system sensor histidine kinase; beta	97.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.95
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.84
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.8
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.73
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.6
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.59
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.57
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.55
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.51
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.48
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.39
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.3
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.18
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.08
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.99
3ott_A	758	Two-component system sensor histidine kinase; beta	95.84
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.82
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.8
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.65
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.65
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.56
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.55
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.54
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.43
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.38
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.35
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.13
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.95
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.82
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.71
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.58
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.51
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.22
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.89
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.14
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.59
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	90.98
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.41
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	87.68
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	85.86
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.92
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	82.83
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	82.02

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-41  Score=368.40  Aligned_cols=268  Identities=29%  Similarity=0.492  Sum_probs=247.9

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      ++.+|.+.|+|++|+|++++||+|+.||.|+|||+.+                            ......+.+|.+.|+
T Consensus       103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~----------------------------~~~~~~l~~h~~~V~  154 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----------------------------GDFERTLKGHTDSVQ  154 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT----------------------------CCCCEEECCCSSCEE
T ss_pred             eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------CcEEEEEeccCCcEE
Confidence            5678999999999999999999999999999999875                            223456789999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~  505 (656)
                      +++|+|++++|++|+.||+|++||+.++.++..+.+|...|.+++|+|++.+|++|+.|++|++||++++.++..+.+|.
T Consensus       155 ~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~  234 (410)
T 1vyh_C          155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR  234 (410)
T ss_dssp             EEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC--------------------CCEEEEE
Q 006220          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD--------------------GRYMASG  565 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~--------------------g~~L~s~  565 (656)
                      ..|.+++|+|++.+|++|+.|++|++||++++.+...+.+|...|.+++|+|+                    |.+|++|
T Consensus       235 ~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg  314 (410)
T 1vyh_C          235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  314 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999996                    6799999


Q ss_pred             ECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCC
Q 006220          566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK  645 (656)
Q Consensus       566 ~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~  645 (656)
                      +.||.|++||+.++.++..+.+|...|++++|+|++.+|++|+.||+|++||+.++...               ..+..+
T Consensus       315 s~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~---------------~~~~~h  379 (410)
T 1vyh_C          315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM---------------KTLNAH  379 (410)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC---------------EEEECC
T ss_pred             eCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE---------------EEEcCC
Confidence            99999999999999999999999999999999999999999999999999999776533               234456


Q ss_pred             CCCeEEEEEcC
Q 006220          646 STPVYSLQVLR  656 (656)
Q Consensus       646 ~~pv~sv~Ftr  656 (656)
                      ..+|.+++|++
T Consensus       380 ~~~v~~l~~~~  390 (410)
T 1vyh_C          380 EHFVTSLDFHK  390 (410)
T ss_dssp             SSCEEEEEECS
T ss_pred             CCcEEEEEEcC
Confidence            66777777753

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.9e-41  Score=348.65  Aligned_cols=256  Identities=23%  Similarity=0.387  Sum_probs=234.2

Q ss_pred             EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      ..++.+|.+.|++++|+|++++|++|+.||.|+|||+.+                            ......+.+|..+
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~----------------------------~~~~~~~~~~~~~   57 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET----------------------------QVEVRSIQVTETP   57 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----------------------------TEEEEEEECCSSC
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC----------------------------CceeEEeeccCCc
Confidence            346889999999999999999999999999999999875                            2355677889999


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEec
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMA  502 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~  502 (656)
                      |.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.||+|++||++++ .....+.
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~  137 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE  137 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999877 4556788


Q ss_pred             CCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcC--CCCEEEEEECCCcEEEEeCCC
Q 006220          503 GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSP--DGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       503 ~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp--~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      +|...|.+++|+| ++.+|++|+.|++|++||++++.....+. +|...+..+.|+|  ++.+|++|+.||.|++||+++
T Consensus       138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (304)
T ss_dssp             CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred             ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence            9999999999999 67899999999999999999887665554 5667899999987  778999999999999999999


Q ss_pred             CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      ++++..+.+|...|.+++|+|++.+|++|+.||+|++||+.+++.....
T Consensus       218 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~  266 (304)
T 2ynn_A          218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (304)
T ss_dssp             TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence            9999999999999999999999999999999999999999887755443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.4e-41  Score=349.64  Aligned_cols=272  Identities=24%  Similarity=0.383  Sum_probs=244.9

Q ss_pred             EEEEeeCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec
Q 006220          344 FYTFINTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~d----g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  419 (656)
                      +....+|.+.|+|++|+|+    +.+|++|+.|+.|+||++...                          .......+.+
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~--------------------------~~~~~~~l~g   78 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE--------------------------RLDLQWSLEG   78 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT--------------------------EEEEEEEECC
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC--------------------------Ceeeeeeecc
Confidence            3455689999999999975    679999999999999998641                          1123446789


Q ss_pred             CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~  499 (656)
                      |...|.+++|++++.++++|+.|++|++||+.+++.+..+..|...+++++|+|++.+|++|+.||.+++|++++++...
T Consensus        79 h~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~  158 (321)
T 3ow8_A           79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY  158 (321)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                      .+..|...|.+++|+|++++|++|+.||.|++||+++++++..+.+|..+|.+++|+|++++|++|+.||.|++||++++
T Consensus       159 ~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~  238 (321)
T 3ow8_A          159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA  238 (321)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred             EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      .++..+.+|...|.+++|+|++.+|++|+.||+|++||+.+++...               .+..+..+|.+++|++
T Consensus       239 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~---------------~~~~h~~~v~~v~~s~  300 (321)
T 3ow8_A          239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH---------------TFFDHQDQVWGVKYNG  300 (321)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---------------EECCCSSCEEEEEECT
T ss_pred             ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE---------------EEcCCCCcEEEEEECC
Confidence            9999999999999999999999999999999999999998765443               3344556677777653

>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1

Probab=100.00  E-value=8.4e-44  Score=320.03  Aligned_cols=139  Identities=32%  Similarity=0.584  Sum_probs=130.2

Q ss_pred             cCChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcCCC
Q 006220           61 EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLS  140 (656)
Q Consensus        61 ~~~~~~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~  140 (656)
                      ++||+.|+++|.+|++||++|||+||+||++|||||||||||+||++| .++|++||++|+++|..+|+++|++|++|++
T Consensus         4 ~~dp~~y~~~y~~Lr~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~   82 (148)
T 2j49_A            4 MNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNS   82 (148)
T ss_dssp             ---CTTHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCS
T ss_pred             ccCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCC
Confidence            578999999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             hhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcc---hHhHhhcceeEEEEcCCCCC
Q 006220          141 PSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST---KMLGIINERINFQVSPGQPS  200 (656)
Q Consensus       141 ~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~~~~~~~~~~  200 (656)
                      |+|+++|+++++||+|||+|+||++++++|++||+++++.   +|++|||+||+|++++|.|+
T Consensus        83 p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~gg~~ll~Iin~~i~i~v~~~~p~  145 (148)
T 2j49_A           83 IDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIVESVTA  145 (148)
T ss_dssp             HHHHHHCHHHHHHHSSCEEEEECHHHHHHHHHHHHHTGGGTHHHHHHHHHHHEEEEEC-----
T ss_pred             HHHHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCcccHHHHHHHHHHheeEeeeCCCCC
Confidence            9999999999999999999999999999999999999988   99999999999999998775

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=100.00  E-value=1.6e-43  Score=323.76  Aligned_cols=151  Identities=28%  Similarity=0.558  Sum_probs=144.6

Q ss_pred             CCCchhhcccccccccccCChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 006220           44 ILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFRED  123 (656)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~  123 (656)
                      +.+|+++++.+.++. +++||+.|+++|.+||+||++|||+||+||++|||||||||||+||++|+.++|+.||+||+++
T Consensus         5 ~~~e~~~~~~~~~~~-~~~dp~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~   83 (156)
T 2nxp_A            5 VEDQPDVSAVLSAYN-QQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGD   83 (156)
T ss_dssp             ---CCCHHHHHGGGS-SCCCTTSHHHHHHHHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG
T ss_pred             ccCCchHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHH
Confidence            347889999998786 5679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhHHHHHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEc
Q 006220          124 HEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVS  195 (656)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~  195 (656)
                      |+..|+++|++|++|++|+|+++|++++.||+|||+|+||++++++|++||+++++.+|++|||+||+|+++
T Consensus        84 ~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~~fL~~~~~~~ll~Iin~~i~i~v~  155 (156)
T 2nxp_A           84 QECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIF  155 (156)
T ss_dssp             SCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHHHHTCEEEEE
T ss_pred             hHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCChHHHHHHHHheeeeee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.6e-40  Score=344.39  Aligned_cols=263  Identities=18%  Similarity=0.394  Sum_probs=245.7

Q ss_pred             ccceecCCCCCCce-eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220          329 RNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (656)
Q Consensus       329 ~~~v~l~~~~~ps~-~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (656)
                      ...+++|+...... ..+.+.+|...|.+++|++++.++++|+.|+.|++||+..                         
T Consensus        57 D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~-------------------------  111 (321)
T 3ow8_A           57 DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN-------------------------  111 (321)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------------------------
T ss_pred             CCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC-------------------------
Confidence            45788887655443 3456788999999999999999999999999999999875                         


Q ss_pred             CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcE
Q 006220          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (656)
Q Consensus       408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i  487 (656)
                         ......+..|...+.+++|+|++++|++|+.||.|++|++.++.....+..|...|.+++|+|++.+|++|+.||.|
T Consensus       112 ---~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i  188 (321)
T 3ow8_A          112 ---GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII  188 (321)
T ss_dssp             ---TEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ---CCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence               23455677888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      ++||+++++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++..+..+.+|...|.+++|+|+|.+|++|+.
T Consensus       189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  268 (321)
T 3ow8_A          189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS  268 (321)
T ss_dssp             EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       568 dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      ||.|++||+.+++++..+.+|.+.|++++|+|++.+|++++.||+|++||+.
T Consensus       269 D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          269 DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999973

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-39  Score=341.44  Aligned_cols=270  Identities=22%  Similarity=0.377  Sum_probs=242.3

Q ss_pred             eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       343 ~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      +..++.+|.+.|++++|+||+++|++|+.||.|+|||+..                            ......+..|..
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~----------------------------~~~~~~~~~~~~   98 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT----------------------------TNKVHAIPLRSS   98 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT----------------------------CCEEEEEECSSS
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC----------------------------CCcceEeecCCc
Confidence            4567889999999999999999999999999999999864                            234456778999


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCc----eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                      .|.+++|+|++++|++|+.|+.|++|++.+..    ....+.+|...|.++.|++++. +++++.|++|++||+.+++++
T Consensus        99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~  177 (340)
T 1got_B           99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQT  177 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEE
Confidence            99999999999999999999999999998653    4556789999999999998775 899999999999999999999


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      ..+.+|...|.+++|+|+++++++|+.|++|++||++++.++..+.+|...|++++|+|+|++|++|+.||.|++||+++
T Consensus       178 ~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~  257 (340)
T 1got_B          178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeEeeeC--CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          579 GRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       579 ~~~~~~~~~--h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      ++.+..+..  +...|.+++|+|+|++|++|+.||.|++||+.++...               ..+..+..+|.+++|++
T Consensus       258 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~---------------~~~~~h~~~v~~~~~s~  322 (340)
T 1got_B          258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA---------------GVLAGHDNRVSCLGVTD  322 (340)
T ss_dssp             TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---------------EEEECCSSCEEEEEECT
T ss_pred             CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe---------------eEeecCCCcEEEEEEcC
Confidence            988877653  3357999999999999999999999999999776533               34556777888888864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.9e-40  Score=356.15  Aligned_cols=262  Identities=28%  Similarity=0.526  Sum_probs=242.9

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+...... ..++.+|.+.|++++|+|++++|++|+.||.|+|||+..                          
T Consensus       129 Dg~i~vwd~~~~~~-~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~--------------------------  181 (410)
T 1vyh_C          129 DATIKVWDYETGDF-ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--------------------------  181 (410)
T ss_dssp             SSCEEEEETTTCCC-CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--------------------------
T ss_pred             CCeEEEEECCCCcE-EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------------------------
Confidence            45788887654432 346788999999999999999999999999999999864                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                        ......+.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|+|++.+|++|+.|++|+
T Consensus       182 --~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          182 --FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  259 (410)
T ss_dssp             --SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             --CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence              234556778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCC--------------------CCEEEEEECCCcEEEEeCCCCeeEEEEecCCC
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHIN--------------------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRS  548 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~--------------------~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~  548 (656)
                      +||+.+......+.+|...|.+++|+|+                    +.+|++|+.|++|++||++++.++..+.+|..
T Consensus       260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~  339 (410)
T 1vyh_C          260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  339 (410)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence            9999999999999999999999999996                    67899999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      .|++++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||+|+||+++
T Consensus       340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999963

>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1

Probab=100.00  E-value=3.5e-42  Score=306.94  Aligned_cols=134  Identities=31%  Similarity=0.694  Sum_probs=127.7

Q ss_pred             ChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcCCChh
Q 006220           63 GPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPS  142 (656)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~  142 (656)
                      -|+.|+++|.+|++||++|||+||+||++|||||||||||+||++|+.++|++||+||+++|+.+ +++|++|++|++|+
T Consensus         4 ~~~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e   82 (138)
T 2j4b_A            4 MKDQMETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQ   82 (138)
T ss_dssp             ---CHHHHHHHHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHH
T ss_pred             hHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             hhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEcCC
Q 006220          143 HLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPG  197 (656)
Q Consensus       143 ~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~  197 (656)
                      |+++|+++++||+|||+|+||++++++|++||+++++.+|++|||+||+|++++|
T Consensus        83 ~l~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~~ll~Iin~~i~i~v~~g  137 (138)
T 2j4b_A           83 HIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHLDIKVYVG  137 (138)
T ss_dssp             HHHHCHHHHHHHHSCEEEEEEHHHHHHHHHHHHHTTCHHHHHHHHHHEEEEEECC
T ss_pred             HHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHCCChHHHHHHHHheeeEeeCC
Confidence            9999999999999999999999999999999999999999999999999999876

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.6e-39  Score=339.38  Aligned_cols=250  Identities=21%  Similarity=0.250  Sum_probs=217.7

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      ...+..+|++++|+|++ .|++|+.||.|+|||+......                        ......+.+|.+.|++
T Consensus        78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~------------------------~~~~~~~~~H~~~V~~  132 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL------------------------IVSKFCKYEHDDIVST  132 (344)
T ss_dssp             EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC------------------------EEEEEEEECCSSCEEE
T ss_pred             eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce------------------------eEeeccccCCCCCEEE
Confidence            34567789999999985 6778999999999998753211                        1223346689999999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEec--C
Q 006220          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMA--G  503 (656)
Q Consensus       427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~  503 (656)
                      ++|+|++++|++|+.||+|++||+.+++++..+.+|...|++++|+|++ .+|++|+.|++|++||++++++...+.  .
T Consensus       133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  212 (344)
T 4gqb_B          133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA  212 (344)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce
Confidence            9999999999999999999999999999999999999999999999987 578999999999999999999888775  4


Q ss_pred             CCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCee
Q 006220          504 HLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       504 ~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g-~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                      |...+.+++|+| ++++|++|+.||+|++||+++++++..+.+|...|++++|+|+| ++|++|+.||+|+|||+.++++
T Consensus       213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~  292 (344)
T 4gqb_B          213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL  292 (344)
T ss_dssp             -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred             eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence            556799999998 46788999999999999999999999999999999999999998 5899999999999999998876


Q ss_pred             eEeeeCCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCC
Q 006220          582 VTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       582 ~~~~~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      + .+.+|.+.|++++|+|++. +|++||.||+|++|++.+..
T Consensus       293 ~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          293 F-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             E-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             E-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            5 5679999999999999875 67899999999999997743

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2e-38  Score=335.83  Aligned_cols=271  Identities=25%  Similarity=0.371  Sum_probs=241.4

Q ss_pred             eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       343 ~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      ...++.+|.+.|+|++|+|++++||+|+.||.|+|||..+                            ......+..|..
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~----------------------------~~~~~~~~~~~~  107 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT----------------------------TNKEHAVTMPCT  107 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------------CCEEEEEECSSS
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------CCcceEEecCCC
Confidence            4557889999999999999999999999999999999764                            123445667889


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCC------ceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~  496 (656)
                      .|.+++|+|++.+|++|+.|+.+++|++...      .....+.+|...|.+++|+|++..|++|+.|++|++||+++++
T Consensus       108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~  187 (354)
T 2pbi_B          108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ  187 (354)
T ss_dssp             CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred             CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe
Confidence            9999999999999999999999999998643      3356677899999999999999999999999999999999999


Q ss_pred             eeEEecCCCCCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          497 PLRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw  574 (656)
                      .+..+.+|...|.+++|+|  ++++|++|+.||+|++||+++++++..+.+|...|++++|+|++.+|++|+.||.|++|
T Consensus       188 ~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lw  267 (354)
T 2pbi_B          188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY  267 (354)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            9999999999999999987  56899999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCeeeEeeeCC--CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEE
Q 006220          575 DLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL  652 (656)
Q Consensus       575 D~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv  652 (656)
                      |++.++.+..+..+  ...+.+++|+|++.+|++|+.||+|++||+.++...               ..+..+..+|.++
T Consensus       268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~---------------~~l~~h~~~v~~l  332 (354)
T 2pbi_B          268 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV---------------SILFGHENRVSTL  332 (354)
T ss_dssp             ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE---------------EEECCCSSCEEEE
T ss_pred             ECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE---------------EEEECCCCcEEEE
Confidence            99999887776544  357899999999999999999999999999876533               3345677778888


Q ss_pred             EEcC
Q 006220          653 QVLR  656 (656)
Q Consensus       653 ~Ftr  656 (656)
                      +|++
T Consensus       333 ~~sp  336 (354)
T 2pbi_B          333 RVSP  336 (354)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            8864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-38  Score=334.96  Aligned_cols=263  Identities=24%  Similarity=0.384  Sum_probs=237.9

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+..... +..++..|...|.+++|+|++++||+|+.|+.|++|++....                        
T Consensus        76 Dg~v~iWd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~------------------------  130 (340)
T 1got_B           76 DGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE------------------------  130 (340)
T ss_dssp             TTEEEEEETTTCC-EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS------------------------
T ss_pred             CCcEEEEECCCCC-cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC------------------------
Confidence            4578888765443 345667788899999999999999999999999999987421                        


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                      ........+.+|.+.|.++.|++++. +++++.|++|++||+.++..+..+.+|...|.+++|+|++.+|++|+.||+|+
T Consensus       131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~  209 (340)
T 1got_B          131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            11234566789999999999998765 88999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC--CCCeEEEEEcCCCCEEEEEE
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g~~L~s~~  566 (656)
                      +||++++.++..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+..+  ...|++++|+|+|++|++|+
T Consensus       210 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  289 (340)
T 1got_B          210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             EEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC
Confidence            9999999999999999999999999999999999999999999999999888777532  34799999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       567 ~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      .||.|++||+.+++.+..+.+|.+.|.+++|+|+|.+|++|+.||+|+|||
T Consensus       290 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999999999999999999999999999999999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-38  Score=334.71  Aligned_cols=283  Identities=23%  Similarity=0.413  Sum_probs=234.5

Q ss_pred             eEEEEeeCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc
Q 006220          343 SFYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (656)
Q Consensus       343 ~~~~~~~~~~-~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~  421 (656)
                      +..++.+|.+ .|.+++|+|+|++||+|+.|+.|+||++.....                         ........+|.
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-------------------------~~~~~~~~~h~   61 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-------------------------ICKSVLSEGHQ   61 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-------------------------EEEEEECSSCS
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-------------------------eeeeeeccccC
Confidence            4556778877 899999999999999999999999999864110                         01222346899


Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc---
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ---  496 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~---  496 (656)
                      +.|.+++|+|++++|++|+.|++|++|+...+.  ++..+.+|..+|.+++|+|++++|++|+.|++|++||++...   
T Consensus        62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~  141 (345)
T 3fm0_A           62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE  141 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred             CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence            999999999999999999999999999998763  567888999999999999999999999999999999998764   


Q ss_pred             eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCe--eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~--~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw  574 (656)
                      .+..+.+|...|.+++|+|++.+|++|+.|++|++||.+++.  +...+.+|...|++++|+|+|++|++|+.||+|+||
T Consensus       142 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW  221 (345)
T 3fm0_A          142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW  221 (345)
T ss_dssp             EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence            456778999999999999999999999999999999998875  457788999999999999999999999999999999


Q ss_pred             eCCC---------------CeeeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccc
Q 006220          575 DLAS---------------GRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  638 (656)
Q Consensus       575 D~~~---------------~~~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~  638 (656)
                      |...               .+++..+.+ |...|++++|+|++..|++++.|+.|++|+..........      .....
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~------~~~~~  295 (345)
T 3fm0_A          222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP------TFSLT  295 (345)
T ss_dssp             EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC------CEEEE
T ss_pred             ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee------eEEEE
Confidence            9632               134445555 8899999999999999999999999999998765321100      00001


Q ss_pred             cccccCCCCCeEEEEEcC
Q 006220          639 LKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       639 l~~~p~~~~pv~sv~Ftr  656 (656)
                      ......|..+|.+|+|++
T Consensus       296 ~~~~~~h~~~V~~v~~~p  313 (345)
T 3fm0_A          296 AHLHQAHSQDVNCVAWNP  313 (345)
T ss_dssp             EEETTSSSSCEEEEEECS
T ss_pred             eeecccccCcEeEeEEeC
Confidence            122346677888888864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-37  Score=322.08  Aligned_cols=255  Identities=25%  Similarity=0.514  Sum_probs=231.0

Q ss_pred             eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       343 ~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      ..+++.+|.+.|++++|+|++++||+|+.||.|+||++..                            ......+.+|..
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~----------------------------~~~~~~~~~h~~   66 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----------------------------GKFEKTISGHKL   66 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------CCEEEEECCCSS
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC----------------------------cccchhhccCCC
Confidence            3567889999999999999999999999999999999864                            234456778999


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~  502 (656)
                      .|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.||+|++||+++++.+..+.
T Consensus        67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  146 (312)
T 4ery_A           67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP  146 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                      .|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .+..++.+++|+|++++|++++.||.|++||+.++++
T Consensus       147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  226 (312)
T 4ery_A          147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC  226 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence            999999999999999999999999999999999999887764 4567899999999999999999999999999999999


Q ss_pred             eEeeeCCCccEE---EEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          582 VTPLMGHTSCVW---TLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       582 ~~~~~~h~~~V~---~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      +..+.+|...+.   .....+++.+|++|+.||.|++||+.+++...
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  273 (312)
T 4ery_A          227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ  273 (312)
T ss_dssp             EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred             EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence            999988875432   23334678999999999999999998876443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.2e-37  Score=322.82  Aligned_cols=256  Identities=28%  Similarity=0.427  Sum_probs=229.8

Q ss_pred             EEEEeeCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          344 FYTFINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      ..++.+|.+.|++++|+|++ ++|++|+.|+.|++|++.....                       ........+.+|..
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~-----------------------~~~~~~~~~~~h~~   66 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-----------------------KFGVPVRSFKGHSH   66 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT-----------------------EEEEEEEEEECCSS
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc-----------------------cccccceEEeCCcc
Confidence            34678999999999999965 8999999999999999864111                       01235567889999


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~  502 (656)
                      .|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|..+|.+++|+|++.+|++|+.|++|++||++. ..+..+.
T Consensus        67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~  145 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLL  145 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999999999999974 5778888


Q ss_pred             CCCCCeeEEEEcCC------CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          503 GHLSDVDCVRWHIN------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       503 ~~~~~V~~v~~~p~------~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      +|...|.+++|+|+      +..+++|+.|+.|++||+++++....+.+|...|.+++|+|+|++|++|+.||.|++||+
T Consensus       146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~  225 (319)
T 3frx_A          146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL  225 (319)
T ss_dssp             CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            99999999999985      448999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       577 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      .+++++..+..+ ..|.+++|+|++.+|++++.+ .+++|++.......
T Consensus       226 ~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~  272 (319)
T 3frx_A          226 AAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVD  272 (319)
T ss_dssp             TTTEEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEE
T ss_pred             CCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeee
Confidence            999999888755 689999999999999988755 59999998755443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.6e-38  Score=336.23  Aligned_cols=283  Identities=23%  Similarity=0.399  Sum_probs=234.9

Q ss_pred             CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCC---CCCCcc------------c
Q 006220          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND---TTPRED------------I  404 (656)
Q Consensus       340 ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~---~~~~~~------------~  404 (656)
                      ...+..++.+|.+.|+|++|+|++++||+|+.||+|+|||+.+...............   ..+...            +
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            3456678899999999999999999999999999999999876443222111000000   000000            0


Q ss_pred             cC------CCCCceeeEEeecCccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEe-----eCCCccEEEEEEe
Q 006220          405 IG------PNGRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY-----KGHNYPVWDVQFN  472 (656)
Q Consensus       405 ~~------~~~~~~~~~~l~~h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~-----~~h~~~V~~l~~s  472 (656)
                      ..      ..........+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.++..+..+     .+|...|.+++|+
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            00      011122334577999999999999975 57999999999999999999988777     6799999999998


Q ss_pred             c-CCCEEEEEECCCcEEEEECC-CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC--
Q 006220          473 P-QGHYFASSSHDRTARIWSMD-RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS--  548 (656)
Q Consensus       473 p-~~~~l~sgs~Dg~i~lwd~~-~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~--  548 (656)
                      + ++.+|++|+.||+|++||++ ...++..+.+|...|.+++|+|++++|++|+.||+|++||++++.++..+..+..  
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence            7 88999999999999999998 5578889999999999999999999999999999999999999999988865432  


Q ss_pred             -----CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee----eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          549 -----MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL----MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       549 -----~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~----~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                           .|++++|+|+|++|++|+.||.|++||+.+++.+..+    .+|.+.|++++|+|+|.+|++|+.||+|+||++.
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence                 4899999999999999999999999999999888777    5799999999999999999999999999999997


Q ss_pred             CCC
Q 006220          620 TST  622 (656)
Q Consensus       620 ~~~  622 (656)
                      ...
T Consensus       375 ~~~  377 (380)
T 3iz6_a          375 GHR  377 (380)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.4e-37  Score=327.47  Aligned_cols=266  Identities=27%  Similarity=0.369  Sum_probs=237.8

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+..... ....+..+...|.+++|+|+|.+||+|+.|+.|++|++......                      
T Consensus        85 Dg~v~vWd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~----------------------  141 (354)
T 2pbi_B           85 DGKVIVWDSFTTN-KEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE----------------------  141 (354)
T ss_dssp             TSEEEEEETTTCC-EEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC----------------------
T ss_pred             CCeEEEEECCCCC-cceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc----------------------
Confidence            4578888754433 34566677888999999999999999999999999998642110                      


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec--CCCEEEEEECCCc
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRT  486 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~  486 (656)
                      ........+.+|.+.|.+++|+|++..|++|+.|++|++||+.+++.+..+.+|...|.+++|+|  ++.+|++|+.||+
T Consensus       142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~  221 (354)
T 2pbi_B          142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK  221 (354)
T ss_dssp             CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred             cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence            01123455678999999999999999999999999999999999999999999999999999988  5789999999999


Q ss_pred             EEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC--CCeEEEEEcCCCCEEEE
Q 006220          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMAS  564 (656)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~--~~i~~l~~sp~g~~L~s  564 (656)
                      |++||+++++++..+.+|...|.+++|+|++.+|++|+.|++|++||++++..+..+..+.  ..+++++|+|+|++|++
T Consensus       222 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~  301 (354)
T 2pbi_B          222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA  301 (354)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence            9999999999999999999999999999999999999999999999999998887776443  47899999999999999


Q ss_pred             EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      |+.||.|++||+.+++.+..+.+|.+.|++++|+|+|++|++|+.||+|+||+
T Consensus       302 g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          302 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999999999999999999999999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=328.66  Aligned_cols=272  Identities=22%  Similarity=0.267  Sum_probs=220.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      +...|.+++|||||++|++|+ |+++++||..........                 .............|..+|++++|
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~v~~~~~   90 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC-----------------AAPNEGFCSAGVQTEAGVADLTW   90 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG-----------------GTTCGGGCSEEEEESSCEEEEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecccc-----------------ccCCcceeeeeeccCCCEEEEEE
Confidence            456799999999999999886 778888874310000000                 00001122233456788999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeEE----eeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLVC----YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~----~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~  505 (656)
                      +|++ .|++|+.||+|+|||+.+++.+..    ..+|...|++++|+|+|++|++|+.|++|++||+.+++++..+.+|.
T Consensus        91 s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~  169 (344)
T 4gqb_B           91 VGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA  169 (344)
T ss_dssp             ETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             eCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC
Confidence            9985 688999999999999998876544    34899999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCee
Q 006220          506 SDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       506 ~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                      ..|.+++|+|++ .+|++|+.|++|++||++++++...+.  .|...+.+++|+|+ +++|++|+.||.|++||++++++
T Consensus       170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~  249 (344)
T 4gqb_B          170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC  249 (344)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C
T ss_pred             CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE
Confidence            999999999987 478999999999999999999888764  45567999999995 57899999999999999999999


Q ss_pred             eEeeeCCCccEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          582 VTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       582 ~~~~~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      +..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++..                .+..|..+|.+|+|++
T Consensus       250 ~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~----------------~~~~H~~~V~~v~~sp  309 (344)
T 4gqb_B          250 VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF----------------RSQAHRDFVRDATWSP  309 (344)
T ss_dssp             CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE----------------EECCCSSCEEEEEECS
T ss_pred             EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE----------------EEcCCCCCEEEEEEeC
Confidence            99999999999999999997 58999999999999999876432                1234556666666653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.1e-37  Score=331.28  Aligned_cols=269  Identities=26%  Similarity=0.472  Sum_probs=222.2

Q ss_pred             EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      ....+|.+.|+|++|||||++||+|+ ++.++||++................          .............+...|
T Consensus        58 ~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~v  126 (393)
T 1erj_A           58 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN----------KDPENLNTSSSPSSDLYI  126 (393)
T ss_dssp             EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------------------------CCCCBE
T ss_pred             EEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc----------cccccccccccCCCceeE
Confidence            34557999999999999999999985 7899999987643322111000000          000000111122344569


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  504 (656)
                      .+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||+++++....+. +
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~  205 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-I  205 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-c
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998887776 5


Q ss_pred             CCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEE-------ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          505 LSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF-------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       505 ~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~-------~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      ...+.+++|+| ++++|++|+.||.|++||++++..+..+       .+|...|.+++|+|+|++|++|+.||.|++||+
T Consensus       206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~  285 (393)
T 1erj_A          206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL  285 (393)
T ss_dssp             SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            57899999999 8999999999999999999999888776       579999999999999999999999999999999


Q ss_pred             CC------------CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          577 AS------------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       577 ~~------------~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      .+            +.+...+.+|...|.+++|++++.+|++|+.||.|++||+.++....
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~  346 (393)
T 1erj_A          286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL  346 (393)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence            75            34566778999999999999999999999999999999998876543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.7e-37  Score=320.19  Aligned_cols=249  Identities=23%  Similarity=0.391  Sum_probs=217.1

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+.+|.+.|++++|+|+|++||+|+.|+.|+||++...                          .......+.+|.++|+
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--------------------------~~~~~~~l~gH~~~V~   57 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW   57 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS--------------------------CBCCCEEECCCSSCEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC--------------------------CcEEEEEEccccCCeE
Confidence            45678899999999999999999999999999998631                          1224466889999999


Q ss_pred             EEEEccC--CCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEEECCCCc--e
Q 006220          426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQ--P  497 (656)
Q Consensus       426 ~l~~spd--~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~~--~  497 (656)
                      +++|+++  +++|++|+.||+|++||+.++.  .+..+.+|..+|.+++|+|+  +.+|++|+.|++|++||++...  .
T Consensus        58 ~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~  137 (297)
T 2pm7_B           58 RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS  137 (297)
T ss_dssp             EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC
T ss_pred             EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee
Confidence            9999864  8899999999999999998774  56677889999999999997  8999999999999999998753  2


Q ss_pred             eEEecCCCCCeeEEEEcCC-------------CCEEEEEECCCcEEEEeCCCCe----eEEEEecCCCCeEEEEEcCCC-
Q 006220          498 LRIMAGHLSDVDCVRWHIN-------------CNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDG-  559 (656)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~-------------~~~l~tgs~dg~V~iwd~~~~~----~~~~~~~h~~~i~~l~~sp~g-  559 (656)
                      ...+.+|...|.+++|+|+             +++|++|+.|++|++||++++.    ....+.+|...|.+++|+|++ 
T Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~  217 (297)
T 2pm7_B          138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  217 (297)
T ss_dssp             CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC
Confidence            4667799999999999997             5799999999999999998776    667888999999999999985 


Q ss_pred             --CEEEEEECCCcEEEEeCCCCe---eeEee--eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          560 --RYMASGDEDGTIMMWDLASGR---CVTPL--MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       560 --~~L~s~~~dg~I~iwD~~~~~---~~~~~--~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                        .+|++|+.||+|+|||+.++.   ....+  ..|...|++++|+|++++|++++.||+|++|+...
T Consensus       218 ~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          218 LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence              899999999999999997643   11223  46788999999999999999999999999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-37  Score=322.41  Aligned_cols=250  Identities=24%  Similarity=0.434  Sum_probs=212.7

Q ss_pred             eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe-ec-C
Q 006220          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-QG-H  420 (656)
Q Consensus       343 ~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-h  420 (656)
                      +..++.+|.+.|++++|+|+  +||+|+.|+.|+||++....                          ......+ .+ |
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~--------------------------~~~~~~~~~~~h   57 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD--------------------------FTLIDVLDETAH   57 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC--------------------------CEEEEEECTTCC
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC--------------------------eEEEEEEecCCc
Confidence            35567889999999999998  99999999999999986411                          1122233 34 9


Q ss_pred             ccCEEEEEEccCCCEEEEEeCCCeEEEEeccC-------CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL-------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~-------~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~  493 (656)
                      .++|.+++|+|++++|++|+.|++|++|++..       ...+..+.+|..+|.+++|+|++.+|++|+.|++|++||++
T Consensus        58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence            99999999999999999999999999999853       34567788999999999999999999999999999999995


Q ss_pred             C----CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--eeEEEEecCCCCeEEEEEcCC--CCEEEEE
Q 006220          494 R----IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPD--GRYMASG  565 (656)
Q Consensus       494 ~----~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~--~~~~~~~~h~~~i~~l~~sp~--g~~L~s~  565 (656)
                      .    .+++..+.+|...|.+++|+|++.+|++|+.|++|++||..++  +++..+.+|.+.|.+++|+|+  +.+|++|
T Consensus       138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  217 (330)
T 2hes_X          138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG  217 (330)
T ss_dssp             TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred             CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEE
Confidence            3    2467788899999999999999999999999999999999876  678899999999999999998  7799999


Q ss_pred             ECCCcEEEEeCCCC--------eeeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          566 DEDGTIMMWDLASG--------RCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       566 ~~dg~I~iwD~~~~--------~~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      +.|++|++||+..+        .+...+.+ |...|++++|++++ +|++++.||.|++||+.++
T Consensus       218 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             ETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred             eCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence            99999999998764        44555555 89999999999765 8999999999999998765

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.7e-37  Score=351.24  Aligned_cols=267  Identities=22%  Similarity=0.320  Sum_probs=234.3

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      .+.+++|+...+. ...++.+|...|+|++|||||++||+|+.||.|+|||+....                        
T Consensus        38 ~~~v~l~~~~~~~-~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~------------------------   92 (611)
T 1nr0_A           38 GTSVYTVPVGSLT-DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT------------------------   92 (611)
T ss_dssp             TTEEEEEETTCSS-CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT------------------------
T ss_pred             CCEEEEecCCCcc-cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc------------------------
Confidence            3577888765433 234577899999999999999999999999999999986311                        


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCC----CeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEEC
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSH  483 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~  483 (656)
                        ......+.+|.++|.+++|+|+++.|++++.+    ++|++||  ++.....+.+|...|++++|+|++. .|++|+.
T Consensus        93 --~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~  168 (611)
T 1nr0_A           93 --HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD  168 (611)
T ss_dssp             --CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEET
T ss_pred             --ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeC
Confidence              12334677899999999999999999998875    4788887  4666777899999999999999986 6999999


Q ss_pred             CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-------cCCCCeEEEEEc
Q 006220          484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-------GHRSMILSLAMS  556 (656)
Q Consensus       484 Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-------~h~~~i~~l~~s  556 (656)
                      |++|++||....+....+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.       +|.+.|.+++|+
T Consensus       169 D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s  248 (611)
T 1nr0_A          169 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS  248 (611)
T ss_dssp             TSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred             CCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC
Confidence            9999999999988999999999999999999999999999999999999999999998884       799999999999


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCeeeEe-------------------------------------------eeCCCccEE
Q 006220          557 PDGRYMASGDEDGTIMMWDLASGRCVTP-------------------------------------------LMGHTSCVW  593 (656)
Q Consensus       557 p~g~~L~s~~~dg~I~iwD~~~~~~~~~-------------------------------------------~~~h~~~V~  593 (656)
                      |+|++|++++.|++|++||+.+++++..                                           +.+|...|+
T Consensus       249 pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~  328 (611)
T 1nr0_A          249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAIT  328 (611)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEE
Confidence            9999999999999999999988765543                                           347889999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          594 TLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       594 ~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      +++|+|+|++|++++.||+|++||+.++...
T Consensus       329 ~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          329 ALSSSADGKTLFSADAEGHINSWDISTGISN  359 (611)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence            9999999999999999999999999887643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.5e-36  Score=317.97  Aligned_cols=287  Identities=22%  Similarity=0.338  Sum_probs=231.9

Q ss_pred             eEEEEeeCCCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE
Q 006220          343 SFYTFINTHNGLNCASI-----SQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL  416 (656)
Q Consensus       343 ~~~~~~~~~~~V~~l~f-----s~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (656)
                      +..++.+|.+.|+|++|     ++ |+++||+|+.|++|+||++......                     .........
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~---------------------~~~~~~~~~   71 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN---------------------GYFGIPHKA   71 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS---------------------SBSEEEEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc---------------------cccccccch
Confidence            34567889999999999     77 9999999999999999998742110                     001234567


Q ss_pred             eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (656)
Q Consensus       417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~  496 (656)
                      +.+|...|.+++|+|++.++++|+.|++|++||+.+++.+..+.+|..+|.+++|+|++.+|++|+.|++|++||+... 
T Consensus        72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-  150 (343)
T 2xzm_R           72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-  150 (343)
T ss_dssp             ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-
T ss_pred             hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999999843 


Q ss_pred             eeEEec---CCCCCeeEEEEcCCC----------CEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220          497 PLRIMA---GHLSDVDCVRWHINC----------NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       497 ~~~~~~---~~~~~V~~v~~~p~~----------~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~  563 (656)
                      ......   +|...|.+++|+|++          .++++|+.||+|++|| .++.....+.+|...|.+++|+|+|++|+
T Consensus       151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  229 (343)
T 2xzm_R          151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIA  229 (343)
T ss_dssp             EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEE
Confidence            333333   788899999999987          7999999999999999 56777888999999999999999999999


Q ss_pred             EEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccc
Q 006220          564 SGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL  642 (656)
Q Consensus       564 s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~  642 (656)
                      +|+.||.|++||+... .....+ .+...|.+++|+|++.+++++ .|+.|++|++.+..........  ..........
T Consensus       230 sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~--~~~~~~~~~~  305 (343)
T 2xzm_R          230 TGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIE--AEPITKAEGQ  305 (343)
T ss_dssp             EEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECC--CCSGGGBTTB
T ss_pred             EEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEee--cCcchhhhhh
Confidence            9999999999999543 344333 355679999999999887655 5888999999876543211100  0011111222


Q ss_pred             cCCCCCeEEEEEcC
Q 006220          643 PTKSTPVYSLQVLR  656 (656)
Q Consensus       643 p~~~~pv~sv~Ftr  656 (656)
                      ..+..+|.+++|++
T Consensus       306 ~~~~~~v~~~~~sp  319 (343)
T 2xzm_R          306 KGKNPQCTSLAWNA  319 (343)
T ss_dssp             CCSCCCEEEEEECS
T ss_pred             cCCCCceEEEEECC
Confidence            35666788888864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1e-37  Score=330.75  Aligned_cols=253  Identities=19%  Similarity=0.244  Sum_probs=215.9

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      ...+|..+|++++|+|++.+| +|+.||.|+|||+.......                        .......+|.+.|+
T Consensus        89 ~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~------------------------~~~~~~~~h~~~V~  143 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLL------------------------VNKFAKYEHDDIVK  143 (357)
T ss_dssp             EEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------C------------------------CCCEEECCCSSCEE
T ss_pred             ccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeE------------------------EEeeccCCCCCCEE
Confidence            456788899999999998755 56689999999987522111                        11233558999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEECCCcEEEEECCCCceeEEec--
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMA--  502 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~Dg~i~lwd~~~~~~~~~~~--  502 (656)
                      +++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++. ++++++.||+|++||++++++...+.  
T Consensus       144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~  223 (357)
T 4g56_B          144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC  223 (357)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence            999999999999999999999999999999999999999999999999874 78999999999999999988776554  


Q ss_pred             CCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCe
Q 006220          503 GHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGR  580 (656)
Q Consensus       503 ~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g-~~L~s~~~dg~I~iwD~~~~~  580 (656)
                      .|...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++
T Consensus       224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~  303 (357)
T 4g56_B          224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE  303 (357)
T ss_dssp             TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred             cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence            56678999999997 5689999999999999999999999999999999999999987 589999999999999999998


Q ss_pred             eeEeeeCCCccEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCCce
Q 006220          581 CVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       581 ~~~~~~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      ++..+ +|.+.|++++|+| ++.+|++|+.||+|++|++.+..+.
T Consensus       304 ~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          304 VFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             EEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred             EeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence            87654 8999999999998 7999999999999999999775443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-37  Score=324.65  Aligned_cols=271  Identities=21%  Similarity=0.294  Sum_probs=225.9

Q ss_pred             ccceecCCCCCCcee-EEE-EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220          329 RNRVHLSSAALPSVS-FYT-FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~-~~~-~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (656)
                      ...+++|+....... ... ..+|...|++++|+|++++||+|+.|+.|+||++...                       
T Consensus        37 D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~-----------------------   93 (345)
T 3fm0_A           37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-----------------------   93 (345)
T ss_dssp             TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-----------------------
T ss_pred             CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC-----------------------
Confidence            457888876544322 222 2468889999999999999999999999999997641                       


Q ss_pred             CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc---eeEEeeCCCccEEEEEEecCCCEEEEEEC
Q 006220          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSH  483 (656)
Q Consensus       407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~sgs~  483 (656)
                         .......+.+|.++|.+++|+|++++|++|+.|++|++||+.++.   ++..+.+|...|.+++|+|++.+|++|+.
T Consensus        94 ---~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~  170 (345)
T 3fm0_A           94 ---DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY  170 (345)
T ss_dssp             ----EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET
T ss_pred             ---CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC
Confidence               123456788999999999999999999999999999999998764   35667889999999999999999999999


Q ss_pred             CCcEEEEECCCCc--eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC---------------eeEEEEec-
Q 006220          484 DRTARIWSMDRIQ--PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---------------ECVRIFIG-  545 (656)
Q Consensus       484 Dg~i~lwd~~~~~--~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~---------------~~~~~~~~-  545 (656)
                      |++|++||.+...  +...+.+|...|.+++|+|++++|++|+.|++|++||....               .++..+.+ 
T Consensus       171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (345)
T 3fm0_A          171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF  250 (345)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred             CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence            9999999998765  45678899999999999999999999999999999996321               34445555 


Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe---------eeEeeeCCCccEEEEEEcCCC-CEEEEEECCCcEEE
Q 006220          546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR---------CVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKL  615 (656)
Q Consensus       546 h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~---------~~~~~~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~i  615 (656)
                      |...|.+++|+|++..|++++.|+.|++|+...+.         ......+|...|++++|+|++ .+|++|+.||+|++
T Consensus       251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~  330 (345)
T 3fm0_A          251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF  330 (345)
T ss_dssp             CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence            88899999999999999999999999999987542         112235899999999999987 59999999999999


Q ss_pred             EeCCCCCcee
Q 006220          616 WDVTTSTKVL  625 (656)
Q Consensus       616 Wd~~~~~~~~  625 (656)
                      |++.+.+...
T Consensus       331 W~~~~~~~~~  340 (345)
T 3fm0_A          331 WKYQRPEGLH  340 (345)
T ss_dssp             EEECC-----
T ss_pred             EEecCCCCcc
Confidence            9998876543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-37  Score=330.57  Aligned_cols=252  Identities=21%  Similarity=0.285  Sum_probs=211.1

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc
Q 006220          348 INTHNGLNCASISQDGSLVAGGFS------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~  421 (656)
                      ..|...|+|++|||||++||+|+.      |+.|++|+.......                        ........+|.
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~------------------------~~~~~~~~~~~   94 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN------------------------ESLCTAGVQTE   94 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C------------------------GGGCSEEEECS
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc------------------------eeEecccCCCC
Confidence            357888999999999999999997      677888886542111                        12233456789


Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE----EeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~----~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~  497 (656)
                      ..|++++|+|++. +++++.||+|++||+.+++...    ...+|..+|.+++|+|++.+|++|+.||+|++||+++++.
T Consensus        95 ~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~  173 (357)
T 4g56_B           95 AGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV  173 (357)
T ss_dssp             SCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE
T ss_pred             CCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            9999999999875 5567889999999998876542    3457999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCC-CCEEEEEECCCcEEE
Q 006220          498 LRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPD-GRYMASGDEDGTIMM  573 (656)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~-g~~L~s~~~dg~I~i  573 (656)
                      +..+.+|...|.+++|+|++. ++++++.||+|++||+++++++..+.  .|...+++++|+|+ +.+|++|+.|+.|++
T Consensus       174 ~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~  253 (357)
T 4g56_B          174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL  253 (357)
T ss_dssp             EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred             EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeE
Confidence            999999999999999999875 78999999999999999988776543  46678999999997 568999999999999


Q ss_pred             EeCCCCeeeEeeeCCCccEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCCce
Q 006220          574 WDLASGRCVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       574 wD~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      ||+++++++..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++..
T Consensus       254 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          254 VNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF  305 (357)
T ss_dssp             EESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred             EECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence            9999999999999999999999999987 68999999999999999876543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-36  Score=314.44  Aligned_cols=262  Identities=25%  Similarity=0.403  Sum_probs=231.8

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+.... .+..++..|...|.+++|+|++++|++|+.|+.|++||+.+                          
T Consensus        34 dg~v~lWd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~--------------------------   86 (304)
T 2ynn_A           34 SGRVELWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--------------------------   86 (304)
T ss_dssp             TSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--------------------------
T ss_pred             CCcEEEEECCCC-ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC--------------------------
Confidence            457889976543 34567778889999999999999999999999999999875                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc-eeEEeeCCCccEEEEEEec-CCCEEEEEECCCc
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRT  486 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~  486 (656)
                        ......+.+|.+.|.+++|+|++++|++|+.||+|++||+.++. ....+.+|...|.+++|+| ++.+|++|+.|++
T Consensus        87 --~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A           87 --GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             --CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             --CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence              23556688999999999999999999999999999999998874 4567889999999999999 6789999999999


Q ss_pred             EEEEECCCCceeEEec-CCCCCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220          487 ARIWSMDRIQPLRIMA-GHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       487 i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~  563 (656)
                      |++||+++..+...+. +|...+.++.|+|  ++.+|++|+.|++|++||+++++++..+.+|...|.+++|+|++.+|+
T Consensus       165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  244 (304)
T 2ynn_A          165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII  244 (304)
T ss_dssp             EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred             EEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence            9999998877665554 5668899999987  778999999999999999999999999999999999999999999999


Q ss_pred             EEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC--EEEEEECCCcEEEEeCCC
Q 006220          564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS--LLASGSADCTVKLWDVTT  620 (656)
Q Consensus       564 s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~--~l~sgs~Dg~I~iWd~~~  620 (656)
                      +|+.||.|++||+.+++++..+..|...+++++|+|++.  ++++|+.| .+.+|++..
T Consensus       245 s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~  302 (304)
T 2ynn_A          245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN  302 (304)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred             EEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence            999999999999999999999999999999999999875  57777655 577888765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.6e-36  Score=314.71  Aligned_cols=261  Identities=23%  Similarity=0.411  Sum_probs=230.8

Q ss_pred             cceecCCCCC----CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220          330 NRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (656)
Q Consensus       330 ~~v~l~~~~~----ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (656)
                      ..+++|+...    ...+..++.+|...|++++|+|++++|++|+.|+.|+|||+.+                       
T Consensus        40 ~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~-----------------------   96 (319)
T 3frx_A           40 KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-----------------------   96 (319)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------
T ss_pred             ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-----------------------
Confidence            4566775421    1334567889999999999999999999999999999999875                       


Q ss_pred             CCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC------CCEEE
Q 006220          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ------GHYFA  479 (656)
Q Consensus       406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~------~~~l~  479 (656)
                           ......+.+|.+.|.+++|+|++.+|++|+.|++|++||++ +.++..+.+|...|.++.|+|.      +..++
T Consensus        97 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~  170 (319)
T 3frx_A           97 -----GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTII  170 (319)
T ss_dssp             -----TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEE
T ss_pred             -----CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence                 34566788999999999999999999999999999999997 5677888899999999999985      45899


Q ss_pred             EEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC
Q 006220          480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG  559 (656)
Q Consensus       480 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g  559 (656)
                      +++.|++|++||+++.+....+.+|...|.+++|+|++++|++|+.||+|++||+.+++++..+..+ ..|.+++|+|++
T Consensus       171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~  249 (319)
T 3frx_A          171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNR  249 (319)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSS
T ss_pred             EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999988754 689999999999


Q ss_pred             CEEEEEECCCcEEEEeCCCCeeeEeeeC--------CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          560 RYMASGDEDGTIMMWDLASGRCVTPLMG--------HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       560 ~~L~s~~~dg~I~iwD~~~~~~~~~~~~--------h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      .+|++++.+ .+++|++..+..+..+..        |...+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus       250 ~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          250 YWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             SEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            999998765 599999988877766542        4567999999999999999999999999998653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=319.13  Aligned_cols=270  Identities=21%  Similarity=0.380  Sum_probs=215.8

Q ss_pred             ccceecCCCCCCce-eEEEE-ee-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220          329 RNRVHLSSAALPSV-SFYTF-IN-THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (656)
Q Consensus       329 ~~~v~l~~~~~ps~-~~~~~-~~-~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (656)
                      ...+++|+...... ....+ .. |.+.|++++|+|++++||+|+.|+.|+||++......                   
T Consensus        33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~-------------------   93 (330)
T 2hes_X           33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR-------------------   93 (330)
T ss_dssp             SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------------------------
T ss_pred             CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-------------------
Confidence            45778887654332 23333 23 8889999999999999999999999999998631100                   


Q ss_pred             CCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC----ceeEEeeCCCccEEEEEEecCCCEEEEE
Q 006220          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHYFASS  481 (656)
Q Consensus       406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp~~~~l~sg  481 (656)
                        .........+.+|.+.|++++|+|++++|++|+.|++|++||+...    .++..+.+|...|.+++|+|++.+|++|
T Consensus        94 --~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~  171 (330)
T 2hes_X           94 --TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS  171 (330)
T ss_dssp             ---CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             --cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE
Confidence              0112345678899999999999999999999999999999999432    4567788999999999999999999999


Q ss_pred             ECCCcEEEEECCCC--ceeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC--------eeEEEEec-CCC
Q 006220          482 SHDRTARIWSMDRI--QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG--------ECVRIFIG-HRS  548 (656)
Q Consensus       482 s~Dg~i~lwd~~~~--~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~--------~~~~~~~~-h~~  548 (656)
                      +.|++|++||..+.  +++..+.+|...|.+++|+|+  +.+|++|+.|++|++||++++        .+...+.+ |..
T Consensus       172 s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~  251 (330)
T 2hes_X          172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR  251 (330)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred             cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence            99999999998766  678889999999999999998  779999999999999998764        44555555 899


Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--eeEe-eeCCCc-cEEEEEEcC--CCCEEEEEECCCcEEEEeCCC
Q 006220          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGR--CVTP-LMGHTS-CVWTLAYSC--EGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~--~~~~-~~~h~~-~V~~l~~s~--~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      .|.+++|++++ +|++++.||.|++||..++.  .+.. ..+|.. .|.+++|+|  ++++|++|+.||+|++||+..
T Consensus       252 ~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            99999999765 89999999999999998774  3333 357886 899999999  789999999999999999865

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6.1e-37  Score=331.83  Aligned_cols=301  Identities=25%  Similarity=0.422  Sum_probs=261.3

Q ss_pred             cccccCcCCCCCCCCCCCCCCCCChhHHHHHHHHhccceecCCCCCCcee-EEEEeeCCCCeEEEEEcCCCCEEEEEeCC
Q 006220          294 SRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVS-FYTFINTHNGLNCASISQDGSLVAGGFSD  372 (656)
Q Consensus       294 ~~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~v~l~~~~~ps~~-~~~~~~~~~~V~~l~fs~dg~~La~g~~d  372 (656)
                      .+..+.++.++|.+++++|+..++|+..+.+...+.+.|++|+....... .+.+.+|...|+|++|+|||++||+|+.|
T Consensus        89 i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D  168 (420)
T 4gga_A           89 IPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS  168 (420)
T ss_dssp             CCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC
Confidence            34456788899999999999999998877666678899999998766543 44556777889999999999999999999


Q ss_pred             CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccC
Q 006220          373 SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL  452 (656)
Q Consensus       373 g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~  452 (656)
                      |.|+|||+..                            ......+.+|...|.+++|+  +..|++|+.|+.+++||...
T Consensus       169 g~v~iWd~~~----------------------------~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~  218 (420)
T 4gga_A          169 AEVQLWDVQQ----------------------------QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV  218 (420)
T ss_dssp             SCEEEEETTT----------------------------TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS
T ss_pred             CeEEEEEcCC----------------------------CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecc
Confidence            9999999875                            34566788999999998886  67999999999999999886


Q ss_pred             Cc-eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc----eeEEecCCCCCeeEEEEcCCC-CEEEE--EE
Q 006220          453 NA-NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRWHINC-NYIAT--GS  524 (656)
Q Consensus       453 ~~-~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~----~~~~~~~~~~~V~~v~~~p~~-~~l~t--gs  524 (656)
                      .. .+..+.+|...+..+.|+|++.++++++.|+.+++|+...++    .+.....|...|.+++|+|.+ ..+++  |+
T Consensus       219 ~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs  298 (420)
T 4gga_A          219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT  298 (420)
T ss_dssp             SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred             cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec
Confidence            54 457788999999999999999999999999999999998764    456777899999999999965 45555  34


Q ss_pred             CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC
Q 006220          525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS  602 (656)
Q Consensus       525 ~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~--~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~  602 (656)
                      .|++|++||+.++.++..+..| ..+.++.|+|+++.+++++  .||.|+|||+.+++++..+.+|.+.|++++|+|+|+
T Consensus       299 ~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~  377 (420)
T 4gga_A          299 SDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA  377 (420)
T ss_dssp             TTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence            7999999999999999988765 5689999999999988865  789999999999999999999999999999999999


Q ss_pred             EEEEEECCCcEEEEeCCCCCcee
Q 006220          603 LLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       603 ~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      +|+||+.||+|+|||+.......
T Consensus       378 ~l~S~s~D~tvriWdv~~~~~~~  400 (420)
T 4gga_A          378 TVASAAADETLRLWRCFELDPAR  400 (420)
T ss_dssp             CEEEEETTTEEEEECCSCSSCC-
T ss_pred             EEEEEecCCeEEEEECCCCCccc
Confidence            99999999999999998765443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-36  Score=324.79  Aligned_cols=239  Identities=30%  Similarity=0.619  Sum_probs=218.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  432 (656)
                      .|++++|+|||++||+|+.||.|+|||+..                            ......+.+|...|++++|+|+
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~~~~~p~  176 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIEN----------------------------RKIVMILQGHEQDIYSLDYFPS  176 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------TEEEEEECCCSSCEEEEEECTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCC----------------------------CcEEEEEccCCCCEEEEEEcCC
Confidence            499999999999999999999999999874                            2355668899999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEe-------cCC
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIM-------AGH  504 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~-------~~~  504 (656)
                      +++|++|+.|++|++||+.++.+...+. +...+.+++|+| ++.+|++|+.||+|++||++++..+..+       .+|
T Consensus       177 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h  255 (393)
T 1erj_A          177 GDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH  255 (393)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC
T ss_pred             CCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC
Confidence            9999999999999999999998877776 566799999999 8999999999999999999998887766       579


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC------------CeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------------GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~------------~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~  572 (656)
                      ...|.+++|+|++++|++|+.|++|++||+++            +.+...+.+|...|.+++|+|++.+|++|+.||.|+
T Consensus       256 ~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~  335 (393)
T 1erj_A          256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL  335 (393)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            99999999999999999999999999999975            345667889999999999999999999999999999


Q ss_pred             EEeCCCCeeeEeeeCCCccEEEEEEcC------CCCEEEEEECCCcEEEEeCCC
Q 006220          573 MWDLASGRCVTPLMGHTSCVWTLAYSC------EGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       573 iwD~~~~~~~~~~~~h~~~V~~l~~s~------~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      +||+.+++++..+.+|.+.|.+++|++      ++.+|++|+.||+|+||++..
T Consensus       336 iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          336 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            999999999999999999999999986      688999999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.9e-36  Score=315.72  Aligned_cols=261  Identities=25%  Similarity=0.400  Sum_probs=219.9

Q ss_pred             ccceecCCCCCC------ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCc
Q 006220          329 RNRVHLSSAALP------SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE  402 (656)
Q Consensus       329 ~~~v~l~~~~~p------s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~  402 (656)
                      ...+++|+....      ..+..++.+|...|++++|+|++.+|++|+.|+.|+|||+..                    
T Consensus        48 D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~--------------------  107 (343)
T 2xzm_R           48 DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT--------------------  107 (343)
T ss_dssp             TSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS--------------------
T ss_pred             CCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--------------------
Confidence            356788865432      244567788999999999999999999999999999999875                    


Q ss_pred             cccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee---CCCccEEEEEEecCC----
Q 006220          403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQG----  475 (656)
Q Consensus       403 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~~----  475 (656)
                              ......+.+|.+.|++++|+|++++|++|+.|++|++||+.. .......   +|...|.+++|+|++    
T Consensus       108 --------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  178 (343)
T 2xzm_R          108 --------GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSAN  178 (343)
T ss_dssp             --------SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred             --------CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeecccccccc
Confidence                    234566789999999999999999999999999999999983 3433333   688899999999987    


Q ss_pred             ------CEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeEEEEecCCC
Q 006220          476 ------HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRS  548 (656)
Q Consensus       476 ------~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~~  548 (656)
                            .+|++++.||+|++||. .......+.+|...|.+++|+|++++|++|+.||.|++||+.+ ......+ .+..
T Consensus       179 ~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~  256 (343)
T 2xzm_R          179 KVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGS  256 (343)
T ss_dssp             CCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSS
T ss_pred             ccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCC
Confidence                  79999999999999994 4567778889999999999999999999999999999999954 4444444 3556


Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE--eee-----------CCCccEEEEEEcCCCCEEEEEECCCcEEE
Q 006220          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT--PLM-----------GHTSCVWTLAYSCEGSLLASGSADCTVKL  615 (656)
Q Consensus       549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~--~~~-----------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i  615 (656)
                      .|.+++|+|++.+++++ .|+.|++||+.+++...  .+.           +|...|.+++|+|+|++|++|+.||+|++
T Consensus       257 ~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~  335 (343)
T 2xzm_R          257 TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRT  335 (343)
T ss_dssp             CEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEE
T ss_pred             cEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEE
Confidence            79999999999888765 57889999998776543  333           68889999999999999999999999999


Q ss_pred             EeCCCC
Q 006220          616 WDVTTS  621 (656)
Q Consensus       616 Wd~~~~  621 (656)
                      |++.++
T Consensus       336 w~~~~g  341 (343)
T 2xzm_R          336 FSFETS  341 (343)
T ss_dssp             EEEEEE
T ss_pred             EEEEcc
Confidence            998653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-35  Score=306.94  Aligned_cols=262  Identities=29%  Similarity=0.526  Sum_probs=233.7

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+..... ....+.+|...|.+++|+|++++|++|+.||.|++||+..                          
T Consensus        44 dg~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--------------------------   96 (312)
T 4ery_A           44 DKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS--------------------------   96 (312)
T ss_dssp             TSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------------------------
T ss_pred             CCeEEEEeCCCcc-cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC--------------------------
Confidence            4567788754433 3446678889999999999999999999999999999874                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                        ......+.+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+..|..+|.+++|+|++.+|++|+.||.|+
T Consensus        97 --~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
T 4ery_A           97 --GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  174 (312)
T ss_dssp             --CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             --CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence              234566788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEE--EEE-cCCCCEEEE
Q 006220          489 IWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILS--LAM-SPDGRYMAS  564 (656)
Q Consensus       489 lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~--l~~-sp~g~~L~s  564 (656)
                      +||+++++.+..+. .+...+.+++|+|++++|++++.||.|++||+++++++..+.+|...+.+  ..+ .+++.+|++
T Consensus       175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  254 (312)
T 4ery_A          175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS  254 (312)
T ss_dssp             EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred             EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence            99999988877664 56678999999999999999999999999999999999999988765433  233 467899999


Q ss_pred             EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEE--CCCcEEEEeCC
Q 006220          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVT  619 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iWd~~  619 (656)
                      |+.||.|++||+.+++.+..+.+|...|.+++|+|++.++++++  .|++|++|+..
T Consensus       255 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999999999999999999999999999999999999997  69999999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.6e-35  Score=333.07  Aligned_cols=277  Identities=33%  Similarity=0.556  Sum_probs=246.4

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+..  ......+.+|...|.+++|+|++++|++|+.||.|++|++..                          
T Consensus       283 d~~i~~w~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~--------------------------  334 (577)
T 2ymu_A          283 DKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------------------------  334 (577)
T ss_dssp             TSCEEEEETT--SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--------------------------
T ss_pred             CCEEEEEeCC--CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--------------------------
Confidence            3467777643  334556778899999999999999999999999999999763                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                         .....+.+|...|.+++|+|++++|++|+.||+|++|+. ++..+..+.+|..+|.+++|+|++.+|++++.|+.|+
T Consensus       335 ---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~  410 (577)
T 2ymu_A          335 ---QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK  410 (577)
T ss_dssp             ---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             ---CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence               234556789999999999999999999999999999996 4778888999999999999999999999999999999


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      +||. +++.+..+.+|...|.+++|+|++++|++++.|++|++||. +++.+..+.+|...|++++|+|+|++|++++.|
T Consensus       411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d  488 (577)
T 2ymu_A          411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD  488 (577)
T ss_dssp             EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred             EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            9995 56778888999999999999999999999999999999995 678888999999999999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCC
Q 006220          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP  648 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~p  648 (656)
                      +.|++||. +++++..+.+|...|++++|+|++++|++++.||.|++||.. ++               .+..+..|..+
T Consensus       489 ~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~---------------~~~~~~~h~~~  551 (577)
T 2ymu_A          489 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ---------------LLQTLTGHSSS  551 (577)
T ss_dssp             SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC---------------EEEEEECCSSC
T ss_pred             CEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CC---------------EEEEEcCCCCC
Confidence            99999995 788999999999999999999999999999999999999963 22               23455677888


Q ss_pred             eEEEEEcC
Q 006220          649 VYSLQVLR  656 (656)
Q Consensus       649 v~sv~Ftr  656 (656)
                      |.+|+|++
T Consensus       552 v~~~~fs~  559 (577)
T 2ymu_A          552 VWGVAFSP  559 (577)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEcC
Confidence            88888874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.1e-37  Score=320.30  Aligned_cols=249  Identities=22%  Similarity=0.386  Sum_probs=212.1

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+.+|.+.|++++|+|+|++||+|+.|+.|+|||+...                          .......+.+|.++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~--------------------------~~~~~~~l~gH~~~V~   61 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG--------------------------GQILIADLRGHEGPVW   61 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETT--------------------------EEEEEEEEECCSSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC--------------------------CcEEEEEEcCCCccEE
Confidence            45688999999999999999999999999999998641                          1123466889999999


Q ss_pred             EEEEcc--CCCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEEECCCCce--
Q 006220          426 SASFSP--LGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQP--  497 (656)
Q Consensus       426 ~l~~sp--d~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~~~--  497 (656)
                      +++|++  ++++|++|+.|++|++||+.++.  ....+.+|...|.+++|+|+  +.+|++|+.|++|++||++....  
T Consensus        62 ~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~  141 (316)
T 3bg1_A           62 QVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE  141 (316)
T ss_dssp             EEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred             EEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence            999986  48899999999999999998764  56677889999999999997  78999999999999999987532  


Q ss_pred             -eEEecCCCCCeeEEEEcCC-----------------CCEEEEEECCCcEEEEeCCCC---eeEEEEecCCCCeEEEEEc
Q 006220          498 -LRIMAGHLSDVDCVRWHIN-----------------CNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMS  556 (656)
Q Consensus       498 -~~~~~~~~~~V~~v~~~p~-----------------~~~l~tgs~dg~V~iwd~~~~---~~~~~~~~h~~~i~~l~~s  556 (656)
                       ...+.+|...|.+++|+|+                 +.+|++|+.|++|++||++.+   .++..+.+|...|.+++|+
T Consensus       142 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s  221 (316)
T 3bg1_A          142 VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA  221 (316)
T ss_dssp             ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred             eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec
Confidence             3455689999999999997                 478999999999999999765   4677788999999999999


Q ss_pred             CCC----CEEEEEECCCcEEEEeCCCC---e-eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          557 PDG----RYMASGDEDGTIMMWDLASG---R-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       557 p~g----~~L~s~~~dg~I~iwD~~~~---~-~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      |++    .+|++|+.||+|++||+.+.   . ....+..|...|++++|+|++++|++++.||+|++|+...
T Consensus       222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            986    89999999999999998762   1 2234567889999999999999999999999999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.1e-35  Score=309.34  Aligned_cols=255  Identities=22%  Similarity=0.379  Sum_probs=225.7

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      +.+|.+.|+|++|+|++++||+|+.||.|+||++....                        ........+.+|.++|++
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------------------~~~~~~~~~~~~~~~v~~   62 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT------------------------SNWELSDSWRAHDSSIVA   62 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS------------------------CCEEEEEEEECCSSCEEE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC------------------------CcceecceeccCCCcEEE
Confidence            46788999999999999999999999999999987521                        112355667899999999


Q ss_pred             EEEcc--CCCEEEEEeCCCeEEEEeccCC---------ceeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEEECC
Q 006220          427 ASFSP--LGDFILSSSADTTIRLWSTKLN---------ANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMD  493 (656)
Q Consensus       427 l~~sp--d~~~L~s~s~Dg~I~lwd~~~~---------~~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~  493 (656)
                      ++|+|  ++.+|++|+.||+|++||+.++         ..+..+.+|..+|.+++|+|+  +.+|++++.||.|++||++
T Consensus        63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~  142 (351)
T 3f3f_A           63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL  142 (351)
T ss_dssp             EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred             EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence            99999  6999999999999999999877         457778899999999999999  9999999999999999998


Q ss_pred             CCceeEEec-------------CCCCCeeEEEEcCC---CCEEEEEECCCcEEEEeCCCCee--EEEEecCCCCeEEEEE
Q 006220          494 RIQPLRIMA-------------GHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAM  555 (656)
Q Consensus       494 ~~~~~~~~~-------------~~~~~V~~v~~~p~---~~~l~tgs~dg~V~iwd~~~~~~--~~~~~~h~~~i~~l~~  555 (656)
                      +.+.+..+.             +|...+.+++|+|+   +.++++++.++.+.+|+...+..  +..+.+|...|++++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  222 (351)
T 3f3f_A          143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW  222 (351)
T ss_dssp             STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE
T ss_pred             ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE
Confidence            876543332             67889999999997   99999999999999998887765  6778899999999999


Q ss_pred             cCCC----CEEEEEECCCcEEEEeCCCC----------------------------------------------eeeEee
Q 006220          556 SPDG----RYMASGDEDGTIMMWDLASG----------------------------------------------RCVTPL  585 (656)
Q Consensus       556 sp~g----~~L~s~~~dg~I~iwD~~~~----------------------------------------------~~~~~~  585 (656)
                      +|++    ++|++|+.||.|++||++.+                                              +.+..+
T Consensus       223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (351)
T 3f3f_A          223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH  302 (351)
T ss_dssp             CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred             CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence            9998    89999999999999999875                                              677778


Q ss_pred             eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       586 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      .+|...|++++|+|++++|++|+.||.|++|++.++....
T Consensus       303 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          303 DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred             ecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence            8999999999999999999999999999999999876543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.6e-35  Score=333.09  Aligned_cols=254  Identities=35%  Similarity=0.612  Sum_probs=232.0

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+...  .....+..|...|.+++|+|++++|++|+.||.|++|+...                          
T Consensus       324 d~~i~~w~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--------------------------  375 (577)
T 2ymu_A          324 DKTVKLWNRNG--QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------------------------  375 (577)
T ss_dssp             TSCEEEEETTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--------------------------
T ss_pred             CCeEEEEeCCC--CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--------------------------
Confidence            34677887543  34456778889999999999999999999999999999642                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                         .....+.+|...|.+++|+|++++|++++.|++|++||. +++.+..+.+|..+|++++|+|++.+|++++.|++|+
T Consensus       376 ---~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~  451 (577)
T 2ymu_A          376 ---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK  451 (577)
T ss_dssp             ---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ---CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence               345667889999999999999999999999999999996 4778888999999999999999999999999999999


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      +||. +++.+..+.+|...|.+++|+|++++|++++.|++|++|| .++++++.+.+|...|++++|+|+|++|++++.|
T Consensus       452 ~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d  529 (577)
T 2ymu_A          452 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD  529 (577)
T ss_dssp             EEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECc
Confidence            9996 4577888899999999999999999999999999999999 4788999999999999999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      |.|++||. +++++..+.+|.+.|++++|+|||++|+|++.|++|++||
T Consensus       530 g~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          530 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999996 7889999999999999999999999999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=9.2e-36  Score=338.63  Aligned_cols=247  Identities=21%  Similarity=0.309  Sum_probs=220.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      +.+.+.+++|+|||++||+++ ++.|+||++..                            ......+.+|.+.|++++|
T Consensus        17 ~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~----------------------------~~~~~~~~~h~~~v~~~~~   67 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS----------------------------LTDTEIYTEHSHQTTVAKT   67 (611)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC----------------------------SSCCEEECCCSSCEEEEEE
T ss_pred             ccCceeEEeeCCCCCEEEeCC-CCEEEEecCCC----------------------------cccCeEecCCCCceEEEEE
Confidence            356789999999999999997 56999999864                            2244567899999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecCCCEEEEEECC----CcEEEEECCCCceeEEecC
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D----g~i~lwd~~~~~~~~~~~~  503 (656)
                      +|+|++|++|+.||+|+|||+.++.  ....+.+|..+|.+++|+|++.+|++++.+    ++|++||  .+.....+.+
T Consensus        68 spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~g  145 (611)
T 1nr0_A           68 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTG  145 (611)
T ss_dssp             CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCC
T ss_pred             CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecC
Confidence            9999999999999999999997544  345678899999999999999999999865    3677777  4556777889


Q ss_pred             CCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220          504 HLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      |...|.+++|+|++. .|++|+.|++|++||..++++...+.+|...|.+++|+|+|++|++|+.||.|++||+.+++++
T Consensus       146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~  225 (611)
T 1nr0_A          146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT  225 (611)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe
Confidence            999999999999987 5999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Eeee-------CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          583 TPLM-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       583 ~~~~-------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      ..+.       +|.+.|++++|+|++++|++++.|++|++||+.+++.....
T Consensus       226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~  277 (611)
T 1nr0_A          226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  277 (611)
T ss_dssp             EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence            8874       79999999999999999999999999999999987765443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-34  Score=304.33  Aligned_cols=255  Identities=20%  Similarity=0.349  Sum_probs=231.3

Q ss_pred             ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC
Q 006220          341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (656)
Q Consensus       341 s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  420 (656)
                      ....+.+.+|.+.|+|++|+|++++|++|+.||.|+|||+..                            ......+.+|
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------------------------~~~~~~~~~h   73 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN----------------------------GERLGTLDGH   73 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT----------------------------CCEEEEECCC
T ss_pred             ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----------------------------chhhhhhhhc
Confidence            455667899999999999999999999999999999999875                            2355667889


Q ss_pred             ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 006220          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRI  495 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D-----g~i~lwd~~~~  495 (656)
                      .+.|.+++|+|++++|++++.||+|++||+.+++.+..+. +..+|.+++|+|++.++++++.+     |.|++||+...
T Consensus        74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B           74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence            9999999999999999999999999999999999988888 88899999999999999999999     99999998755


Q ss_pred             c-----------eeEEecCCCC--CeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCCCCE
Q 006220          496 Q-----------PLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRY  561 (656)
Q Consensus       496 ~-----------~~~~~~~~~~--~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~g~~  561 (656)
                      .           ++..+..|..  .+.+++|+|++++|++|+.||.|++||+++ +..+..+..|...|.+++|+|++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  232 (369)
T 3zwl_B          153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY  232 (369)
T ss_dssp             TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCE
Confidence            3           4455556666  899999999999999999999999999999 7889999999999999999999999


Q ss_pred             EEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCC--------------cEEEEeCCCCCcee
Q 006220          562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC--------------TVKLWDVTTSTKVL  625 (656)
Q Consensus       562 L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg--------------~I~iWd~~~~~~~~  625 (656)
                      |++++.||.|++||+.+++.+..+. +...+.+++|+|++.++++++.++              .|++||+.+++...
T Consensus       233 l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  309 (369)
T 3zwl_B          233 FITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG  309 (369)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred             EEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence            9999999999999999999988887 778899999999999999999998              79999988776543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.5e-34  Score=297.84  Aligned_cols=256  Identities=20%  Similarity=0.346  Sum_probs=227.6

Q ss_pred             EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      .....+|.+.|++++|+|++++|++|+ ||.|++|++.......                       ........+|...
T Consensus        44 ~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~-----------------------~~~~~~~~~~~~~   99 (337)
T 1gxr_A           44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS-----------------------PVSQLDCLNRDNY   99 (337)
T ss_dssp             EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS-----------------------CSEEEECSCTTSB
T ss_pred             cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee-----------------------eeecccccCCCCc
Confidence            445568899999999999999999998 9999999987522110                       0111222378999


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      |.+++|+|++++|++++.||.|++||+.++.  ....+..|...|.+++|+|++.++++++.||.|++||+++++.+..+
T Consensus       100 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~  179 (337)
T 1gxr_A          100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence            9999999999999999999999999999877  56677889999999999999999999999999999999999999999


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                      .+|...|.+++|+|++++|++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++.||.|++||+.+++.
T Consensus       180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~  258 (337)
T 1gxr_A          180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence            9999999999999999999999999999999999999888775 778899999999999999999999999999988765


Q ss_pred             eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       582 ~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      . .+..|...|.+++|+|++++|++++.||.|++||+.+++...
T Consensus       259 ~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          259 Y-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             E-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             E-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence            4 667899999999999999999999999999999999877653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.9e-35  Score=316.49  Aligned_cols=298  Identities=23%  Similarity=0.352  Sum_probs=247.5

Q ss_pred             cCcCCCCCCCCCCCCCCCCChhHHHHHHHHhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 006220          298 ANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKV  377 (656)
Q Consensus       298 ~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~I  377 (656)
                      +..+..+|....+++...+.+.....+.......+++|+.............|.+.|++++|+|++++|++|+.||.|++
T Consensus        81 p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  160 (401)
T 4aez_A           81 PERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI  160 (401)
T ss_dssp             CSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             cceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE
Confidence            33444445555555555555554433344556789999887766655555557889999999999999999999999999


Q ss_pred             EEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEecc-CCcee
Q 006220          378 WDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-LNANL  456 (656)
Q Consensus       378 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~-~~~~~  456 (656)
                      ||+..                            ......+.+|.+.|.+++|+  +.+|++|+.||.|++||+. ....+
T Consensus       161 wd~~~----------------------------~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~  210 (401)
T 4aez_A          161 YDVES----------------------------QTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQI  210 (401)
T ss_dssp             EETTT----------------------------CCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE
T ss_pred             EECcC----------------------------CeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCccee
Confidence            99875                            23455677899999999995  6799999999999999998 45667


Q ss_pred             EEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCC-CEEEEEE--CCCcEEEEe
Q 006220          457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGS--SDKTVRLWD  533 (656)
Q Consensus       457 ~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs--~dg~V~iwd  533 (656)
                      ..+.+|...|.+++|+|++.+|++|+.||.|++||+++.+++..+.+|...|.+++|+|++ ..+++|+  .|+.|++||
T Consensus       211 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d  290 (401)
T 4aez_A          211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN  290 (401)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred             eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence            8889999999999999999999999999999999999999999999999999999999976 4556654  799999999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEEC
Q 006220          534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSA  609 (656)
Q Consensus       534 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~--~dg~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~  609 (656)
                      +++++++..+. +...|.+++|+|+|++|++++  .||.|++||+.++....  .+.+|.+.|.+++|+|++.+|++++.
T Consensus       291 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          291 AATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             TTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred             CCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence            99999998886 667899999999999999954  89999999999876554  46689999999999999999999999


Q ss_pred             CCcEEEEeCCCCCceee
Q 006220          610 DCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       610 Dg~I~iWd~~~~~~~~~  626 (656)
                      ||.|++|++.+++....
T Consensus       370 dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          370 DENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             TSEEEEEECCC------
T ss_pred             CCcEEEEECCCCccccc
Confidence            99999999998776543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.9e-35  Score=314.42  Aligned_cols=260  Identities=18%  Similarity=0.237  Sum_probs=229.5

Q ss_pred             EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      ...+.+|.+.|+|++|+|  ++|++|+.||.|+||++......                      ........+.+|..+
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~h~~~   64 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE----------------------NPKDKSYSHFVHKSG   64 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC----------------------CGGGGEEEEECCTTC
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc----------------------cCCCcceEEecCCCc
Confidence            345668999999999999  89999999999999998752210                      012245667799999


Q ss_pred             EEEEEEccC----C---CEEEEEeCCCeEEEEeccCCce-----eEEeeCC-----CccEEEEEEe----cCCCE-EEEE
Q 006220          424 VYSASFSPL----G---DFILSSSADTTIRLWSTKLNAN-----LVCYKGH-----NYPVWDVQFN----PQGHY-FASS  481 (656)
Q Consensus       424 V~~l~~spd----~---~~L~s~s~Dg~I~lwd~~~~~~-----~~~~~~h-----~~~V~~l~~s----p~~~~-l~sg  481 (656)
                      |++++|+|+    +   ++|++++.||.|++|++.++..     +..+..|     ...|++++|+    |++.+ |++|
T Consensus        65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~  144 (397)
T 1sq9_A           65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT  144 (397)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE
T ss_pred             EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE
Confidence            999999999    9   9999999999999999998887     8888888     5899999999    99999 9999


Q ss_pred             ECCCcEEEEECCC------CceeE-----Ee-------cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE
Q 006220          482 SHDRTARIWSMDR------IQPLR-----IM-------AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF  543 (656)
Q Consensus       482 s~Dg~i~lwd~~~------~~~~~-----~~-------~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~  543 (656)
                      +.||.|++||+.+      .+.+.     .+       ..|...|.+++|+|++ ++++|+.||.|++||+++++.+..+
T Consensus       145 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  223 (397)
T 1sq9_A          145 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF  223 (397)
T ss_dssp             ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE
Confidence            9999999999988      66665     66       4588999999999999 9999999999999999999999999


Q ss_pred             ec---C---CCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeeEeeeC-------------CCccEEEEEEcCCC
Q 006220          544 IG---H---RSMILSLAMSPDGRYMASGDED---GTIMMWDLASGRCVTPLMG-------------HTSCVWTLAYSCEG  601 (656)
Q Consensus       544 ~~---h---~~~i~~l~~sp~g~~L~s~~~d---g~I~iwD~~~~~~~~~~~~-------------h~~~V~~l~~s~~~  601 (656)
                      ..   |   ...|.+++|+|++++|++++.|   |.|++||+.+++.+..+.+             |...|.+++|+|++
T Consensus       224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  303 (397)
T 1sq9_A          224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG  303 (397)
T ss_dssp             ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred             eccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence            99   9   9999999999999999999999   9999999999999999988             99999999999999


Q ss_pred             CEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          602 SLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       602 ~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      ++|++++.||.|++||+.+++......
T Consensus       304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          304 ETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            999999999999999999887665543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-35  Score=311.19  Aligned_cols=251  Identities=22%  Similarity=0.384  Sum_probs=222.8

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+.+|.+.|+|++|+|++++||+|+.||.|+||++...                          .......+.+|.++|+
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--------------------------~~~~~~~~~~h~~~v~   59 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW   59 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT--------------------------EEEEEEEECCCSSCEE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC--------------------------cceeeeEecCCCCcEE
Confidence            46789999999999999999999999999999998631                          1345567889999999


Q ss_pred             EEEEccC--CCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEEECCCCc--e
Q 006220          426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQ--P  497 (656)
Q Consensus       426 ~l~~spd--~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~~--~  497 (656)
                      +++|+++  +++|++|+.||+|++||+.++.  .+..+.+|..+|.+++|+|+  +.+|++++.||.|++||++...  .
T Consensus        60 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  139 (379)
T 3jrp_A           60 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS  139 (379)
T ss_dssp             EEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC
T ss_pred             EEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee
Confidence            9999987  8999999999999999999887  67778889999999999999  9999999999999999998773  4


Q ss_pred             eEEecCCCCCeeEEEEcC-------------CCCEEEEEECCCcEEEEeCCCCe----eEEEEecCCCCeEEEEEcCC--
Q 006220          498 LRIMAGHLSDVDCVRWHI-------------NCNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPD--  558 (656)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p-------------~~~~l~tgs~dg~V~iwd~~~~~----~~~~~~~h~~~i~~l~~sp~--  558 (656)
                      ...+.+|...|.+++|+|             ++.+|++|+.||.|++||++++.    .+..+.+|...|.+++|+|+  
T Consensus       140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  219 (379)
T 3jrp_A          140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  219 (379)
T ss_dssp             EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence            456678999999999999             69999999999999999998764    45677889999999999999  


Q ss_pred             -CCEEEEEECCCcEEEEeCCCCe-----eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          559 -GRYMASGDEDGTIMMWDLASGR-----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       559 -g~~L~s~~~dg~I~iwD~~~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                       +++|++++.||.|++||+.++.     .+.....|...|++++|+|++++|++++.||.|++|++....
T Consensus       220 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          220 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence             8999999999999999998864     222233588999999999999999999999999999998544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.9e-34  Score=296.57  Aligned_cols=282  Identities=24%  Similarity=0.379  Sum_probs=238.2

Q ss_pred             EEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          344 FYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      ..++.+|.+.|+|++|+|+ +++||+|+.||+|+|||+.....                       ........+.+|..
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~-----------------------~~~~~~~~l~~h~~   87 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET-----------------------NYGIPQRALRGHSH   87 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS-----------------------CSEEEEEEECCCSS
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc-----------------------ccceeeEEEeCCCC
Confidence            3468899999999999998 68999999999999999875211                       11335567889999


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee-EEe
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-RIM  501 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~-~~~  501 (656)
                      .|.+++|+|++++|++|+.|+.|++|+............+...+..+.+++++.+|++|+.|+.+++||+...... ...
T Consensus        88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~  167 (340)
T 4aow_A           88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD  167 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred             CEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence            9999999999999999999999999999999888888889999999999999999999999999999999876544 344


Q ss_pred             cCCCCCeeEEEEcCCC--CEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          502 AGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~--~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                      .+|...+.+++|++++  .++++++.|+.|++||+++++++..+.+|.++|++++|+|+|++|++|+.||.|++||+.++
T Consensus       168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence            5889999999999764  57889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      +++..+..+ ..|.+++|+|++.++ +++.|+.|++||+.+...........      .......+..+|.+|+|++
T Consensus       248 ~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~h~~~v~~l~~s~  316 (340)
T 4aow_A          248 KHLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEV------ISTSSKAEPPQCTSLAWSA  316 (340)
T ss_dssp             EEEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------------CCCCCEEEEEECT
T ss_pred             ceeeeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccc------eeeeccCCCCCEEEEEECC
Confidence            999888755 579999999988655 56679999999998876654433211      1223445667788888864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-36  Score=321.25  Aligned_cols=272  Identities=19%  Similarity=0.340  Sum_probs=235.6

Q ss_pred             cceecCCCCCCce-eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          330 NRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       330 ~~v~l~~~~~ps~-~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ..+++|+...... .......|...|++++|+|++++|++|+.||.|++|++....                        
T Consensus        45 ~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~------------------------  100 (416)
T 2pm9_A           45 SSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN------------------------  100 (416)
T ss_dssp             CCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT------------------------
T ss_pred             CeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccc------------------------
Confidence            4567776544321 112234678899999999999999999999999999987411                        


Q ss_pred             CCceeeEEeecCccCEEEEEEccC-CCEEEEEeCCCeEEEEeccCCc------eeE---EeeCCCccEEEEEEecC-CCE
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNA------NLV---CYKGHNYPVWDVQFNPQ-GHY  477 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd-~~~L~s~s~Dg~I~lwd~~~~~------~~~---~~~~h~~~V~~l~~sp~-~~~  477 (656)
                      ........+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++.      ...   ....|...|.+++|+|+ +.+
T Consensus       101 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  180 (416)
T 2pm9_A          101 NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHV  180 (416)
T ss_dssp             SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTE
T ss_pred             ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcE
Confidence            012255667889999999999998 8999999999999999999876      333   23678999999999998 789


Q ss_pred             EEEEECCCcEEEEECCCCceeEEecCC------CCCeeEEEEcCCC-CEEEEEECCC---cEEEEeCCCC-eeEEEEe-c
Q 006220          478 FASSSHDRTARIWSMDRIQPLRIMAGH------LSDVDCVRWHINC-NYIATGSSDK---TVRLWDVSSG-ECVRIFI-G  545 (656)
Q Consensus       478 l~sgs~Dg~i~lwd~~~~~~~~~~~~~------~~~V~~v~~~p~~-~~l~tgs~dg---~V~iwd~~~~-~~~~~~~-~  545 (656)
                      |++++.||.|++||+++.+.+..+..+      ...|.+++|+|++ .++++++.|+   .|++||++++ .++..+. +
T Consensus       181 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~  260 (416)
T 2pm9_A          181 FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG  260 (416)
T ss_dssp             EEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC
T ss_pred             EEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC
Confidence            999999999999999999999888876      7889999999997 6899999998   9999999986 6777787 8


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCCc
Q 006220          546 HRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       546 h~~~i~~l~~sp-~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      |...|.+++|+| ++++|++++.||.|++||+.+++++..+.+|...|.+++|+|++ .+|++++.||.|++||+.+...
T Consensus       261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            999999999999 99999999999999999999999999999999999999999998 8999999999999999988765


Q ss_pred             ee
Q 006220          624 VL  625 (656)
Q Consensus       624 ~~  625 (656)
                      ..
T Consensus       341 ~~  342 (416)
T 2pm9_A          341 TL  342 (416)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.2e-34  Score=306.40  Aligned_cols=246  Identities=20%  Similarity=0.262  Sum_probs=222.1

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      ..|.+.|+|++|+|++++||+|+.||.|+||++...                          .......+.+|.+.|.++
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~--------------------------~~~~~~~~~~h~~~v~~~   58 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN--------------------------KWVQVHELKEHNGQVTGV   58 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT--------------------------EEEEEEEEECCSSCEEEE
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC--------------------------cEEeeeeecCCCCcccEE
Confidence            347789999999999999999999999999998741                          112556678999999999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce----eEEe
Q 006220          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP----LRIM  501 (656)
Q Consensus       428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~----~~~~  501 (656)
                      +|+|++++|++++.||.|++||+.+++....  +..|...|.+++|+|++.+|++|+.||.|++||++....    ....
T Consensus        59 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  138 (372)
T 1k8k_C           59 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK  138 (372)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred             EEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee
Confidence            9999999999999999999999988865443  467899999999999999999999999999999988763    3333


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC------------------CCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV------------------SSGECVRIFIGHRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~------------------~~~~~~~~~~~h~~~i~~l~~sp~g~~L~  563 (656)
                      .+|...|.+++|+|++++|++|+.||.|++||+                  ..++++..+.+|...|.+++|+|++++|+
T Consensus       139 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  218 (372)
T 1k8k_C          139 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  218 (372)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence            578999999999999999999999999999995                  46788999999999999999999999999


Q ss_pred             EEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       564 s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      +++.||.|++||+.+++++..+..|...|.+++|+|++.++++| .||.|++|++..
T Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          219 WVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            99999999999999999999999999999999999999988877 999999999988

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.8e-34  Score=332.98  Aligned_cols=258  Identities=28%  Similarity=0.472  Sum_probs=227.9

Q ss_pred             EEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          345 YTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      -.+.+|.+.|+|++|+|+ +++|++|+.||.|+||++.....                       ........+.+|.+.
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~-----------------------~~~~~~~~~~~h~~~  432 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK-----------------------AYGVAQRRLTGHSHF  432 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT-----------------------CSCEEEEEEECCSSC
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc-----------------------ccccccceecCCCCc
Confidence            357789999999999987 57999999999999999874211                       012345678899999


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe--
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM--  501 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~--  501 (656)
                      |.+++|+|++++|++|+.||+|++||+.++..+..+.+|...|.+++|+|++.+|++|+.|++|++||+.........  
T Consensus       433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~  512 (694)
T 3dm0_A          433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG  512 (694)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998765444333  


Q ss_pred             -cCCCCCeeEEEEcCCC--CEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          502 -AGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       502 -~~~~~~V~~v~~~p~~--~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~  578 (656)
                       .+|...|.|++|+|++  ..+++|+.|++|++||++++++...+.+|.+.|++++|+|+|++|++|+.||.|++||+.+
T Consensus       513 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred             CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence             3688899999999987  6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      ++++..+.. ...|.+++|+|++.+|++++ |+.|+|||+.++......
T Consensus       593 ~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~  639 (694)
T 3dm0_A          593 GKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDL  639 (694)
T ss_dssp             TEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             CceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhh
Confidence            999887754 46799999999998887766 566999999988766544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.5e-36  Score=319.71  Aligned_cols=246  Identities=13%  Similarity=0.183  Sum_probs=209.7

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      +..+.+.|+|++|+|++++||+|+.||.|+||++....                          ......+.+|.++|++
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--------------------------~~~~~~~~~h~~~v~~   60 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--------------------------WKHARTFSDHDKIVTC   60 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--------------------------EEECCCBCCCSSCEEE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--------------------------eEEEEEEecCCceEEE
Confidence            34456789999999999999999999999999987410                          1344556789999999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeccCCc---eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc---eeEE
Q 006220          427 ASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ---PLRI  500 (656)
Q Consensus       427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~---~~~~  500 (656)
                      ++|+|++++|++|+.||+|++||+.++.   ....+.+|..+|++++|+|++.+|++|+.|++|++||+++.+   ....
T Consensus        61 ~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  140 (377)
T 3dwl_C           61 VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH  140 (377)
T ss_dssp             EEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence            9999999999999999999999999877   667788899999999999999999999999999999999877   4677


Q ss_pred             ecC-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC------------------CCeeEEEEecCCCCeEEEEEcCCCCE
Q 006220          501 MAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS------------------SGECVRIFIGHRSMILSLAMSPDGRY  561 (656)
Q Consensus       501 ~~~-~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~------------------~~~~~~~~~~h~~~i~~l~~sp~g~~  561 (656)
                      +.+ |...|.+++|+|++++|++|+.|+.|++||+.                  .++++..+ +|...|++++|+|+|++
T Consensus       141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~  219 (377)
T 3dwl_C          141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA  219 (377)
T ss_dssp             ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC
T ss_pred             eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE
Confidence            777 99999999999999999999999999999985                  35566777 89999999999999999


Q ss_pred             EEEEECCCcEEEEeCCCCee----eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          562 MASGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       562 L~s~~~dg~I~iwD~~~~~~----~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      |++++.||.|++||+.+++.    +..+.+|...|.+++|+|++++|++|+.|+.+ +|+...
T Consensus       220 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          220 LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence            99999999999999999987    88889999999999999999999988766655 777653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.9e-35  Score=313.49  Aligned_cols=269  Identities=16%  Similarity=0.258  Sum_probs=236.1

Q ss_pred             ccceecCCCCCCc-----eeEEEEeeCCCCeEEEEEcCC----C---CEEEEEeCCCcEEEEEcCCCCcccccccCCCCC
Q 006220          329 RNRVHLSSAALPS-----VSFYTFINTHNGLNCASISQD----G---SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN  396 (656)
Q Consensus       329 ~~~v~l~~~~~ps-----~~~~~~~~~~~~V~~l~fs~d----g---~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~  396 (656)
                      ...+++|+.....     .....+..|...|+|++|+|+    +   ++|++|+.||.|++|++......          
T Consensus        35 dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~----------  104 (397)
T 1sq9_A           35 DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET----------  104 (397)
T ss_dssp             TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT----------
T ss_pred             CCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc----------
Confidence            4577888765443     345677789999999999999    9   99999999999999998752210          


Q ss_pred             CCCCCccccCCCCCceeeEEeecC-----ccCEEEEEEc----cCCCE-EEEEeCCCeEEEEeccC------CceeE---
Q 006220          397 DTTPREDIIGPNGRKRSYTLYQGH-----SGPVYSASFS----PLGDF-ILSSSADTTIRLWSTKL------NANLV---  457 (656)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~l~~h-----~~~V~~l~~s----pd~~~-L~s~s~Dg~I~lwd~~~------~~~~~---  457 (656)
                                   .......+.+|     .+.|.+++|+    |++.+ |++|+.||.|++||+.+      +..+.   
T Consensus       105 -------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  171 (397)
T 1sq9_A          105 -------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  171 (397)
T ss_dssp             -------------CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             -------------ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence                         01125566677     5999999999    99999 99999999999999998      66665   


Q ss_pred             --Ee-------eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC---C---CCCeeEEEEcCCCCEEEE
Q 006220          458 --CY-------KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---H---LSDVDCVRWHINCNYIAT  522 (656)
Q Consensus       458 --~~-------~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~---~---~~~V~~v~~~p~~~~l~t  522 (656)
                        .+       ..|...|.+++|+|++ +|++|+.||.|++||+++.+++..+..   |   ...|.+++|+|++++|++
T Consensus       172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~  250 (397)
T 1sq9_A          172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI  250 (397)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence              66       4488999999999999 999999999999999999999999998   8   999999999999999999


Q ss_pred             EECC---CcEEEEeCCCCeeEEEEec-------------CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee
Q 006220          523 GSSD---KTVRLWDVSSGECVRIFIG-------------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (656)
Q Consensus       523 gs~d---g~V~iwd~~~~~~~~~~~~-------------h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~  586 (656)
                      ++.|   |.|++||+++++.+..+.+             |...|.+++|+|++++|++++.||.|++||+.+++++..+.
T Consensus       251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            9999   9999999999999999998             99999999999999999999999999999999999999999


Q ss_pred             ------CC---------------CccEEEEEEcCCC----------CEEEEEECCCcEEEEeCCCC
Q 006220          587 ------GH---------------TSCVWTLAYSCEG----------SLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       587 ------~h---------------~~~V~~l~~s~~~----------~~l~sgs~Dg~I~iWd~~~~  621 (656)
                            +|               ...|++++|+|++          .+|++|+.||.|++|++.++
T Consensus       331 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             cccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence                  88               9999999999998          79999999999999999775

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.1e-35  Score=305.53  Aligned_cols=290  Identities=12%  Similarity=0.198  Sum_probs=239.4

Q ss_pred             CCceeEEEEeeCCCCeEEEEEcCCCCEE-EEEeC---CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceee
Q 006220          339 LPSVSFYTFINTHNGLNCASISQDGSLV-AGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY  414 (656)
Q Consensus       339 ~ps~~~~~~~~~~~~V~~l~fs~dg~~L-a~g~~---dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (656)
                      .|......+.+|.+.|++++|+|++..+ ++|+.   ||.|+||++....                           ...
T Consensus         6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~---------------------------~~~   58 (357)
T 3i2n_A            6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD---------------------------LKL   58 (357)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS---------------------------EEE
T ss_pred             hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc---------------------------ccc
Confidence            4556666778899999999999998654 56665   9999999987521                           122


Q ss_pred             EEeecCccCEEEEEEccC---CCEEEEEeCCCeEEEEeccCCc-eeEEeeCCCccEEEEEE------ecCCCEEEEEECC
Q 006220          415 TLYQGHSGPVYSASFSPL---GDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDVQF------NPQGHYFASSSHD  484 (656)
Q Consensus       415 ~~l~~h~~~V~~l~~spd---~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~l~~------sp~~~~l~sgs~D  484 (656)
                      ....+|..+|.+++|+|+   +.+|++|+.||.|++||+.++. .+..+.+|...|.++.|      +|++.+|++|+.|
T Consensus        59 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d  138 (357)
T 3i2n_A           59 LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD  138 (357)
T ss_dssp             EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred             eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC
Confidence            333478999999999998   6999999999999999999888 88889999999999965      6789999999999


Q ss_pred             CcEEEEECCCCc-eeEEecCCCC----CeeEEE----EcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEE
Q 006220          485 RTARIWSMDRIQ-PLRIMAGHLS----DVDCVR----WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM  555 (656)
Q Consensus       485 g~i~lwd~~~~~-~~~~~~~~~~----~V~~v~----~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~  555 (656)
                      |.|++||+++.. ++..+..|.+    .+.+++    |+|+++++++|+.||.|++||+++++.... ..|...|.+++|
T Consensus       139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~  217 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEF  217 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEE
T ss_pred             CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEc
Confidence            999999999887 7888876555    788998    788999999999999999999999988554 568899999999


Q ss_pred             cC---CCCEEEEEECCCcEEEEeCCCCeeeEeee-----CCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCCceee
Q 006220          556 SP---DGRYMASGDEDGTIMMWDLASGRCVTPLM-----GHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       556 sp---~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-----~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                      +|   ++.+|++|+.||.|++||+++++.+..+.     +|...|++++|+|++. +|++|+.||.|++||+..+.....
T Consensus       218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  297 (357)
T 3i2n_A          218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK  297 (357)
T ss_dssp             SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred             CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence            99   99999999999999999998877665554     8999999999999998 899999999999999987665432


Q ss_pred             cccc----cCCccccccccccCCCCCeEEEEEcC
Q 006220          627 TEEK----SGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       627 ~~~~----~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      ....    ........+..+..+..+|.+++|++
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  331 (357)
T 3i2n_A          298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP  331 (357)
T ss_dssp             CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred             ccCCCCccccccccceeeccccCCCCeeEEEEcC
Confidence            2211    11122345667788888999999875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=299.11  Aligned_cols=299  Identities=24%  Similarity=0.411  Sum_probs=254.0

Q ss_pred             ccccccCcCCCCCCCCCCCCCCCCChhHHHHHHHHhccceecCCCCCCce-eEEEEeeCCCCeEEEEEcCCCCEEEEEeC
Q 006220          293 TSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFS  371 (656)
Q Consensus       293 ~~~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~v~l~~~~~ps~-~~~~~~~~~~~V~~l~fs~dg~~La~g~~  371 (656)
                      ..|..+.++.++|.+.+++|+..+.|+..+.+...+.+.+++|+...... ..+.+.+|...|+|++|+|++++||+|+.
T Consensus         8 ~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~   87 (318)
T 4ggc_A            8 YIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS   87 (318)
T ss_dssp             CCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred             ccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC
Confidence            34556778889999999999988888876655556678999998765543 34455677888999999999999999999


Q ss_pred             CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEecc
Q 006220          372 DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK  451 (656)
Q Consensus       372 dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~  451 (656)
                      ||.|+||++..                            ......+.+|...+.++++.  +..+++|+.++.+++|+..
T Consensus        88 Dg~v~iw~~~~----------------------------~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~  137 (318)
T 4ggc_A           88 SAEVQLWDVQQ----------------------------QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVR  137 (318)
T ss_dssp             TSEEEEEETTT----------------------------TEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETT
T ss_pred             CCcEEEeecCC----------------------------ceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecC
Confidence            99999999875                            34566778999998876664  6799999999999999988


Q ss_pred             CCc-eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc----eeEEecCCCCCeeEEEEcCCCCEE---EEE
Q 006220          452 LNA-NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRWHINCNYI---ATG  523 (656)
Q Consensus       452 ~~~-~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~----~~~~~~~~~~~V~~v~~~p~~~~l---~tg  523 (656)
                      ... .+..+.+|...+..+.+++++.++++++.||+|++||+++++    .......+.+.|.+++++|.+..+   +++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  217 (318)
T 4ggc_A          138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG  217 (318)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEEC
T ss_pred             CCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEec
Confidence            664 456778999999999999999999999999999999998765    345566788899999999976533   456


Q ss_pred             ECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCC
Q 006220          524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG  601 (656)
Q Consensus       524 s~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~--~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~  601 (656)
                      +.+++|++||...+....... +...+..+.|+|++..+++++  .||.|++||+.+++++..+.+|.+.|++++|+|+|
T Consensus       218 ~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg  296 (318)
T 4ggc_A          218 TSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG  296 (318)
T ss_dssp             TTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             CCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence            678999999999888776654 667899999999999888765  79999999999999999999999999999999999


Q ss_pred             CEEEEEECCCcEEEEeCCCCC
Q 006220          602 SLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       602 ~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ++|+||+.||+|+|||+....
T Consensus       297 ~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          297 ATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             SCEEEEETTTEEEEECCSCCC
T ss_pred             CEEEEEecCCeEEEEECCCCC
Confidence            999999999999999997643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=310.90  Aligned_cols=276  Identities=17%  Similarity=0.303  Sum_probs=238.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      |.+.|+|++|+|++++|++|+.||.|++|+..                             ......+.+|..+|.+++|
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-----------------------------~~~~~~~~~~~~~v~~~~~  157 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-----------------------------GALLNVLNFHRAPIVSVKW  157 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-----------------------------SCEEEEECCCCSCEEEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-----------------------------CCeeeeccCCCccEEEEEE
Confidence            56689999999999999999999999999943                             2345567789999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCcc---------------EEEEEEecCCCEEEEEECCCcEEEEECCC
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP---------------VWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---------------V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~  494 (656)
                      +|++++|++++.||.|++||+.++..+..+..+...               +.+++|+|++ .+++++.||.|++||+.+
T Consensus       158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~  236 (425)
T 1r5m_A          158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITE  236 (425)
T ss_dssp             CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTC
T ss_pred             CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCC
Confidence            999999999999999999999999998888888777               9999999975 688999999999999999


Q ss_pred             CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (656)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw  574 (656)
                      .+++..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.+|...|.+++|+|++ ++++++.||.|++|
T Consensus       237 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~  315 (425)
T 1r5m_A          237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLW  315 (425)
T ss_dssp             SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred             CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccc-----cCCccccccccccCCCC--
Q 006220          575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK-----SGTNRLRSLKTLPTKST--  647 (656)
Q Consensus       575 D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~--  647 (656)
                      |+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+.++.........     ........+..+..+..  
T Consensus       316 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (425)
T 1r5m_A          316 SLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND  395 (425)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCC
T ss_pred             ECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence            99999999999999999999999999999999999999999999875521111100     01112224566677755  


Q ss_pred             CeEEEEEcC
Q 006220          648 PVYSLQVLR  656 (656)
Q Consensus       648 pv~sv~Ftr  656 (656)
                      +|.+++|++
T Consensus       396 ~v~~~~~s~  404 (425)
T 1r5m_A          396 YIFDLSWNC  404 (425)
T ss_dssp             CEEEEEECT
T ss_pred             ceEEEEccC
Confidence            899998874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.2e-34  Score=337.32  Aligned_cols=255  Identities=23%  Similarity=0.382  Sum_probs=236.6

Q ss_pred             EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      .++.+|.+.|+|++|||++++||+|+.||.|+|||+.+                            ......+.+|.++|
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~----------------------------~~~~~~~~~~~~~v   58 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET----------------------------QVEVRSIQVTETPV   58 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----------------------------TEEEEEEECCSSCE
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC----------------------------CceEEEEecCCCcE
Confidence            46788999999999999999999999999999999864                            34556777999999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecC
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAG  503 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~  503 (656)
                      .+++|+|++++|++|+.||.|++||+.++..+..+.+|...|++++|+|++.+|++|+.||+|++||++++ .....+.+
T Consensus        59 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  138 (814)
T 3mkq_A           59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG  138 (814)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999886 67778889


Q ss_pred             CCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-CCeEEEEEcC--CCCEEEEEECCCcEEEEeCCCC
Q 006220          504 HLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSP--DGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       504 ~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-~~i~~l~~sp--~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                      |...|.+++|+| +++.|++|+.||.|++||+.++.....+..+. ..+.+++|+|  ++.+|++|+.||.|++||+.++
T Consensus       139 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  218 (814)
T 3mkq_A          139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (814)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred             CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999999999 88999999999999999999988877777665 8899999999  9999999999999999999999


Q ss_pred             eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      +++..+.+|.+.|.+++|+|++.+|++++.||.|++||+.++......
T Consensus       219 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  266 (814)
T 3mkq_A          219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (814)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            999999999999999999999999999999999999999887655443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-33  Score=291.40  Aligned_cols=249  Identities=24%  Similarity=0.321  Sum_probs=223.8

Q ss_pred             CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec
Q 006220          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (656)
Q Consensus       340 ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  419 (656)
                      +.....++.+|.+.|+|++| +++++|++|+.||.|++||+..                            ......+..
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~----------------------------~~~~~~~~~   57 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD----------------------------QWLGTVVYT   57 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS----------------------------SEEEEEEEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC----------------------------CEEEEEeec
Confidence            33456678899999999999 9999999999999999999864                            234566778


Q ss_pred             CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC---ceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~  496 (656)
                      |.+.|.+++|+|++++|++|+.||.|++|++...   ..+..+.+|..+|.+++|  ++.++++++.||.|++||  ...
T Consensus        58 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~  133 (313)
T 3odt_A           58 GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS  133 (313)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE
T ss_pred             CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc
Confidence            9999999999999999999999999999998754   456778899999999999  577999999999999999  667


Q ss_pred             eeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          497 PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~-h~~~i~~l~~sp~g~~L~s~~~dg~I~iw  574 (656)
                      ....+..|...+.+++|+| +++++++++.||.|++||  .+.....+.. |...+.+++|+|++. +++++.||.|++|
T Consensus       134 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~  210 (313)
T 3odt_A          134 LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLV  210 (313)
T ss_dssp             EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEE
T ss_pred             EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEE
Confidence            8888889999999999998 999999999999999999  5677777777 899999999999998 9999999999999


Q ss_pred             eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       575 D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      |+++++.+..+.+|.+.|++++|+|++ .|++++.||.|++||+.+++...
T Consensus       211 d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~  260 (313)
T 3odt_A          211 DMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQ  260 (313)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEE
T ss_pred             ECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeE
Confidence            999999999999999999999999999 58999999999999998876544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.8e-35  Score=309.85  Aligned_cols=262  Identities=22%  Similarity=0.395  Sum_probs=224.1

Q ss_pred             ccceecCCCCCCc-eeEEEEe---eCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCC
Q 006220          329 RNRVHLSSAALPS-VSFYTFI---NTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTP  400 (656)
Q Consensus       329 ~~~v~l~~~~~ps-~~~~~~~---~~~~~V~~l~fs~d----g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~  400 (656)
                      ...+++|+..... ...+..+   .+...|++++|+|+    +.+|++|+.||.|+|||+..                  
T Consensus        43 ~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~------------------  104 (366)
T 3k26_A           43 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT------------------  104 (366)
T ss_dssp             TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT------------------
T ss_pred             CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh------------------
Confidence            3467778655322 2222222   25678999999999    67999999999999999874                  


Q ss_pred             CccccCCCCCceeeEEeecCccCEEEEEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEe---eCCCccEEEEEEecCCC
Q 006220          401 REDIIGPNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGH  476 (656)
Q Consensus       401 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~~~  476 (656)
                                ......+.+|.++|.+++|+| ++.+|++|+.||+|++||+.+++.+..+   .+|...|.+++|+|++.
T Consensus       105 ----------~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  174 (366)
T 3k26_A          105 ----------MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE  174 (366)
T ss_dssp             ----------CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSS
T ss_pred             ----------ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCC
Confidence                      234556778999999999999 8999999999999999999999988888   68999999999999999


Q ss_pred             EEEEEECCCcEEEEECCCCceeEEe----------------------------cCCCCCeeEEEEcCCCCEEEEEECCCc
Q 006220          477 YFASSSHDRTARIWSMDRIQPLRIM----------------------------AGHLSDVDCVRWHINCNYIATGSSDKT  528 (656)
Q Consensus       477 ~l~sgs~Dg~i~lwd~~~~~~~~~~----------------------------~~~~~~V~~v~~~p~~~~l~tgs~dg~  528 (656)
                      +|++++.||.|++||+++++....+                            .+|...|.+++|+  ++++++++.||.
T Consensus       175 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~  252 (366)
T 3k26_A          175 KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENA  252 (366)
T ss_dssp             EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSE
T ss_pred             EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCE
Confidence            9999999999999999876544332                            3499999999998  779999999999


Q ss_pred             EEEEeCCCCee--------------EEEEecCCCCeEEEEEcCC--CCEEEEEECCCcEEEEeCCCCeee----EeeeCC
Q 006220          529 VRLWDVSSGEC--------------VRIFIGHRSMILSLAMSPD--GRYMASGDEDGTIMMWDLASGRCV----TPLMGH  588 (656)
Q Consensus       529 V~iwd~~~~~~--------------~~~~~~h~~~i~~l~~sp~--g~~L~s~~~dg~I~iwD~~~~~~~----~~~~~h  588 (656)
                      |++||++++..              +..+.+|...|++++|+|+  |++|++|+.||.|++||+.++++.    ..+.+|
T Consensus       253 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  332 (366)
T 3k26_A          253 IVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH  332 (366)
T ss_dssp             EEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCT
T ss_pred             EEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccc
Confidence            99999987744              7888899999999999999  999999999999999999987643    467777


Q ss_pred             --CccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          589 --TSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       589 --~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                        ...|++++|+|++++|++++.||.|++||+.+
T Consensus       333 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          333 KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence              79999999999999999999999999999853

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.3e-34  Score=329.72  Aligned_cols=262  Identities=27%  Similarity=0.425  Sum_probs=226.5

Q ss_pred             ccceecCCCCC----CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220          329 RNRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (656)
Q Consensus       329 ~~~v~l~~~~~----ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (656)
                      ...+++|+...    ...+...+.+|...|+|++|+|++++|++|+.||.|+|||+..                      
T Consensus       404 D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~----------------------  461 (694)
T 3dm0_A          404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA----------------------  461 (694)
T ss_dssp             TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------
T ss_pred             CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC----------------------
Confidence            45788886533    2345667889999999999999999999999999999999874                      


Q ss_pred             cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe---eCCCccEEEEEEecCC--CEEE
Q 006220          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQG--HYFA  479 (656)
Q Consensus       405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~~--~~l~  479 (656)
                            ......+.+|.+.|.+++|+|++++|++|+.|++|++||..........   .+|...|.+++|+|++  ..++
T Consensus       462 ------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  535 (694)
T 3dm0_A          462 ------GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV  535 (694)
T ss_dssp             ------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred             ------CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence                  3355678899999999999999999999999999999998754333322   3688899999999986  6899


Q ss_pred             EEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC
Q 006220          480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG  559 (656)
Q Consensus       480 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g  559 (656)
                      +|+.|++|++||+++.+....+.+|.+.|.+++|+|++++|++|+.||+|++||+++++++..+.. ...|.+++|+|++
T Consensus       536 s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~  614 (694)
T 3dm0_A          536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNR  614 (694)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSS
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999887764 4679999999999


Q ss_pred             CEEEEEECCCcEEEEeCCCCeeeEeeeCCC-------------------ccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          560 RYMASGDEDGTIMMWDLASGRCVTPLMGHT-------------------SCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       560 ~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~-------------------~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      .+|++++ ++.|+|||+.++..+..+..+.                   ..+++++|+|+|++|++|+.||+|+||++..
T Consensus       615 ~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          615 YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             SEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence            9888776 5669999999998887765322                   1378999999999999999999999999853

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.6e-35  Score=315.51  Aligned_cols=257  Identities=20%  Similarity=0.349  Sum_probs=215.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc--------
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS--------  421 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~--------  421 (656)
                      +.+.|+|++|+|+|++||+|+.||.|+||++........                 ...........+.+|.        
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~-----------------~~~~~~~~~~~~~~h~~~~~~~~~   89 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-----------------HSRGEYNVYSTFQSHEPEFDYLKS   89 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C-----------------CCCCCEEEEEEEECCCCEEEGGGT
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc-----------------ccccceeEeccccccccccccccc
Confidence            457899999999999999999999999999875321100                 0111233566788998        


Q ss_pred             ----cCEEEEEEccCC--CEEEEEeCCCeEEEEeccCCcee---------------------------------------
Q 006220          422 ----GPVYSASFSPLG--DFILSSSADTTIRLWSTKLNANL---------------------------------------  456 (656)
Q Consensus       422 ----~~V~~l~~spd~--~~L~s~s~Dg~I~lwd~~~~~~~---------------------------------------  456 (656)
                          ++|++++|+|++  ..|++++.||+|++||+.++...                                       
T Consensus        90 ~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (447)
T 3dw8_B           90 LEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPR  169 (447)
T ss_dssp             EEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEE
T ss_pred             ccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccce
Confidence                889999999998  79999999999999998764331                                       


Q ss_pred             EE-eeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC-CceeEE-------ecCCCCCeeEEEEcCCC-CEEEEEECC
Q 006220          457 VC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRI-------MAGHLSDVDCVRWHINC-NYIATGSSD  526 (656)
Q Consensus       457 ~~-~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~-~~~~~~-------~~~~~~~V~~v~~~p~~-~~l~tgs~d  526 (656)
                      .. ..+|..+|++++|+|++.+|++| .|++|++||++. ...+..       +.+|...|.+++|+|++ ++|++|+.|
T Consensus       170 ~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  248 (447)
T 3dw8_B          170 RIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK  248 (447)
T ss_dssp             EEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred             EEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC
Confidence            12 36799999999999999999998 799999999984 444442       45899999999999998 999999999


Q ss_pred             CcEEEEeCCCCee----EEEEecCCC------------CeEEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeeEeeeCCC
Q 006220          527 KTVRLWDVSSGEC----VRIFIGHRS------------MILSLAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTPLMGHT  589 (656)
Q Consensus       527 g~V~iwd~~~~~~----~~~~~~h~~------------~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~-~~~~~~~~~h~  589 (656)
                      |.|++||++++..    +..+.+|..            .|.+++|+|+|++|++++. |.|++||+++ ++++..+.+|.
T Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~  327 (447)
T 3dw8_B          249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE  327 (447)
T ss_dssp             SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred             CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence            9999999999887    788888876            8999999999999999999 9999999997 88898998886


Q ss_pred             cc---------------EEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          590 SC---------------VWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       590 ~~---------------V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      ..               +..++|+|++++|++|+.||.|++||+.+++...
T Consensus       328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence            42               3349999999999999999999999999887653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.1e-35  Score=305.14  Aligned_cols=266  Identities=14%  Similarity=0.251  Sum_probs=227.9

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQD---GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~d---g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (656)
                      ...+++|+............+|...|+|++|+|+   +.+|++|+.||.|++|++....                     
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------  101 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE---------------------  101 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS---------------------
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC---------------------
Confidence            4578889877666655556688999999999999   7999999999999999987521                     


Q ss_pred             CCCCCceeeEEeecCccCEEEEE------EccCCCEEEEEeCCCeEEEEeccCCc-eeEEeeCCCc----cEEEEE----
Q 006220          406 GPNGRKRSYTLYQGHSGPVYSAS------FSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNY----PVWDVQ----  470 (656)
Q Consensus       406 ~~~~~~~~~~~l~~h~~~V~~l~------~spd~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~----~V~~l~----  470 (656)
                            .....+.+|.+.|.++.      |+|++++|++|+.||+|++||+.++. .+..+..|..    .|++++    
T Consensus       102 ------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  175 (357)
T 3i2n_A          102 ------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA  175 (357)
T ss_dssp             ------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred             ------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence                  13455778999999995      46889999999999999999999887 6777766554    899998    


Q ss_pred             EecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcC---CCCEEEEEECCCcEEEEeCCCCeeEEEEe---
Q 006220          471 FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSSGECVRIFI---  544 (656)
Q Consensus       471 ~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p---~~~~l~tgs~dg~V~iwd~~~~~~~~~~~---  544 (656)
                      |+|++.++++++.||.|++||+++++.... ..|...|.+++|+|   +++++++|+.||.|++||+++++.+..+.   
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  254 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS  254 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec
Confidence            788999999999999999999999887544 56889999999999   99999999999999999998877655444   


Q ss_pred             --cCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCC-------------------eeeEeeeCCCccEEEEEEcCCCC
Q 006220          545 --GHRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASG-------------------RCVTPLMGHTSCVWTLAYSCEGS  602 (656)
Q Consensus       545 --~h~~~i~~l~~sp~g~-~L~s~~~dg~I~iwD~~~~-------------------~~~~~~~~h~~~V~~l~~s~~~~  602 (656)
                        +|...|++++|+|+++ +|++|+.||.|++||+..+                   +++..+.+|...|++++|+|+++
T Consensus       255 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  334 (357)
T 3i2n_A          255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR  334 (357)
T ss_dssp             EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST
T ss_pred             cCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC
Confidence              8999999999999998 8999999999999999754                   46777889999999999999999


Q ss_pred             EEE-EEECCCcEEEEeCCCCC
Q 006220          603 LLA-SGSADCTVKLWDVTTST  622 (656)
Q Consensus       603 ~l~-sgs~Dg~I~iWd~~~~~  622 (656)
                      +|+ +++.||.|++||+.+..
T Consensus       335 ~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          335 GLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             TEEEEEETTSEEEEEEECC--
T ss_pred             eEEEEecCCCcEEEEECCCcc
Confidence            998 89999999999998754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2e-33  Score=292.18  Aligned_cols=261  Identities=20%  Similarity=0.323  Sum_probs=231.3

Q ss_pred             ccceecCCCCCC----ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220          329 RNRVHLSSAALP----SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (656)
Q Consensus       329 ~~~v~l~~~~~p----s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (656)
                      ...+++|+....    ....+....|...|++++|+|++++|++|+.||.|++|++....                    
T Consensus        71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--------------------  130 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--------------------  130 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------------
T ss_pred             CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC--------------------
Confidence            456778865432    22233334788899999999999999999999999999987521                    


Q ss_pred             cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC
Q 006220          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (656)
Q Consensus       405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D  484 (656)
                            ......+.+|...|.+++|+|+++++++++.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|
T Consensus       131 ------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          131 ------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             -------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence                  22445677899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s  564 (656)
                      |.|++||+++++.+..+. +...+.+++|+|+++++++++.++.|++||+++++.. .+..|...|.+++|+|++++|++
T Consensus       205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~  282 (337)
T 1gxr_A          205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEE
T ss_pred             CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEE
Confidence            999999999998887775 6788999999999999999999999999999988764 56789999999999999999999


Q ss_pred             EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      ++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++
T Consensus       283 ~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          283 TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            999999999999999887543 57889999999999999999999999999997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4e-34  Score=308.27  Aligned_cols=243  Identities=21%  Similarity=0.317  Sum_probs=213.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ..+.+..|++++++||+|+.||.|+|||+..                            ......+.+|.+.|++++|+|
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~~~~~~  149 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF----------------------------NLQREIDQAHVSEITKLKFFP  149 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTS----------------------------CEEEEETTSSSSCEEEEEECT
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCC----------------------------cceeeecccccCccEEEEECC
Confidence            4456668899999999999999999999864                            234455678999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC---C---
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH---L---  505 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~---~---  505 (656)
                      ++++|++|+.||+|++||+.+++.+..+.+|..+|.+++|+|++.+|++|+.||+|++||+++++.+..+..|   .   
T Consensus       150 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v  229 (420)
T 3vl1_A          150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV  229 (420)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999998888753   2   


Q ss_pred             ------------------CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcCCCC-EEEEE
Q 006220          506 ------------------SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGR-YMASG  565 (656)
Q Consensus       506 ------------------~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~g~-~L~s~  565 (656)
                                        ..+.+++|+|++++|++|+.||.|++||+++++.+..+. +|...|++++|+|++. +|++|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g  309 (420)
T 3vl1_A          230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG  309 (420)
T ss_dssp             EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred             cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence                              445555668999999999999999999999998877665 5788999999999999 99999


Q ss_pred             ECCCcEEEEeCCCCee-eEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          566 DEDGTIMMWDLASGRC-VTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       566 ~~dg~I~iwD~~~~~~-~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      +.||.|++||+++++. +..+.+ |...|.++.| +++.+|++++.||.|++|++.....
T Consensus       310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~  368 (420)
T 3vl1_A          310 YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPES  368 (420)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTC
T ss_pred             eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCC
Confidence            9999999999998754 677776 6678888865 5788999999999999999987543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.2e-34  Score=302.96  Aligned_cols=254  Identities=15%  Similarity=0.181  Sum_probs=216.4

Q ss_pred             EEEEeeCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          344 FYTFINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      ..++.+|.+.|+|++|+|++ ++||+|+.||.|+||++....                          ........+|.+
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------------~~~~~~~~~h~~  119 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN--------------------------KTSFIQGMGPGD  119 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT--------------------------CEEEECCCSTTC
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc--------------------------cceeeecCCcCC
Confidence            44677889999999999999 999999999999999987521                          112223347999


Q ss_pred             CEEEEEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeCC---CccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220          423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGH---NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       423 ~V~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                      .|.+++|+| ++.+|++++.|++|++||+.+ ..+..+..+   ...|.+++|+|++.+|++|+.||.|++||+ +++++
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~  197 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEI  197 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEE
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEE
Confidence            999999999 678999999999999999995 555555544   478999999999999999999999999999 57788


Q ss_pred             EEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCC----CeeEEEEecCCCCeEEEEEcC-CCCEEEEEECCCcEE
Q 006220          499 RIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS----GECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIM  572 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~----~~~~~~~~~h~~~i~~l~~sp-~g~~L~s~~~dg~I~  572 (656)
                      ..+.+|...|.+++|+|++. ++++|+.|+.|++||+++    +.++..+ +|...|.+++|+| +|++|++++.||.|+
T Consensus       198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred             EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence            88999999999999999999 999999999999999998    6677766 6999999999999 999999999999999


Q ss_pred             EEeCCCCeeeEeeeCCC-----------------ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          573 MWDLASGRCVTPLMGHT-----------------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       573 iwD~~~~~~~~~~~~h~-----------------~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      +||+++++.+..+.+|.                 +.+..++|+|++++  +|+.||.|++||+.+++......
T Consensus       277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~  347 (383)
T 3ei3_B          277 VYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR  347 (383)
T ss_dssp             EEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred             EEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec
Confidence            99999988877776543                 33445666666666  77799999999999988765543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-35  Score=325.53  Aligned_cols=247  Identities=11%  Similarity=0.048  Sum_probs=206.7

Q ss_pred             eCCCCeEEEEEcCCC---------CEEEE-------------------EeCCCcEEEEEcCCCCcccccccCCCCCCCCC
Q 006220          349 NTHNGLNCASISQDG---------SLVAG-------------------GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTP  400 (656)
Q Consensus       349 ~~~~~V~~l~fs~dg---------~~La~-------------------g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~  400 (656)
                      .+.+.|.|++|+|++         ++||+                   |+.|++|+||++......              
T Consensus       131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~--------------  196 (524)
T 2j04_B          131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH--------------  196 (524)
T ss_dssp             ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC--------------
T ss_pred             ECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC--------------
Confidence            356778888888776         56666                   447789999998642110              


Q ss_pred             CccccCCCCCceeeEEeecCccCEEEEEEccC------CCEEEEEeCCCeEEEEeccCCce-----------eEEeeCCC
Q 006220          401 REDIIGPNGRKRSYTLYQGHSGPVYSASFSPL------GDFILSSSADTTIRLWSTKLNAN-----------LVCYKGHN  463 (656)
Q Consensus       401 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd------~~~L~s~s~Dg~I~lwd~~~~~~-----------~~~~~~h~  463 (656)
                                ......+.+|.+.|.+++|+|+      +.+|++|+.||+|++||+.++..           ...+.+|.
T Consensus       197 ----------~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~  266 (524)
T 2j04_B          197 ----------CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD  266 (524)
T ss_dssp             ----------EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT
T ss_pred             ----------ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC
Confidence                      1122345678899999999997      57999999999999999986642           24678899


Q ss_pred             ccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecCCCCCeeEE--EEcCCC-CEEEEEECCCcEEEEeCCCCee
Q 006220          464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCV--RWHINC-NYIATGSSDKTVRLWDVSSGEC  539 (656)
Q Consensus       464 ~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~~~~~V~~v--~~~p~~-~~l~tgs~dg~V~iwd~~~~~~  539 (656)
                      .+|++++|+++ ..|++|+.||+|++||++++ .+...+.+|...|.+|  +|+|++ .+|++|+.|++|++||++++++
T Consensus       267 ~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~  345 (524)
T 2j04_B          267 SLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT  345 (524)
T ss_dssp             TCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred             CCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence            99999999986 48999999999999999876 4566788999999999  567887 8999999999999999999988


Q ss_pred             EEEEecCCC--CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          540 VRIFIGHRS--MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       540 ~~~~~~h~~--~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      +..+.+|..  .|.+++|+|+++.+++++.|++|++||++++.++..+.+|.+.|++++|+|+|++|++|+.||+|++||
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence            877777753  588999999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             CCC
Q 006220          618 VTT  620 (656)
Q Consensus       618 ~~~  620 (656)
                      +..
T Consensus       426 ~~~  428 (524)
T 2j04_B          426 AAR  428 (524)
T ss_dssp             SCS
T ss_pred             chH
Confidence            754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.3e-34  Score=302.98  Aligned_cols=268  Identities=16%  Similarity=0.165  Sum_probs=229.8

Q ss_pred             ccceecCCCCCCc-eeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220          329 RNRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (656)
Q Consensus       329 ~~~v~l~~~~~ps-~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (656)
                      ...+++|+..... .+...+.+|...|++++|+|++++|++|+.||.|++|++....                       
T Consensus        29 d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------------------   85 (372)
T 1k8k_C           29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-----------------------   85 (372)
T ss_dssp             SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-----------------------
T ss_pred             CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe-----------------------
Confidence            4577888765443 2455677889999999999999999999999999999986411                       


Q ss_pred             CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce----eEEeeCCCccEEEEEEecCCCEEEEEEC
Q 006220          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFASSSH  483 (656)
Q Consensus       408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~l~~sp~~~~l~sgs~  483 (656)
                         ......+.+|...|.+++|+|++++|++|+.||.|++||+..+..    .....+|...|.+++|+|++.+|++|+.
T Consensus        86 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           86 ---WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             ---EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             ---eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence               122334567899999999999999999999999999999998763    2333568999999999999999999999


Q ss_pred             CCcEEEEECC------------------CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec
Q 006220          484 DRTARIWSMD------------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG  545 (656)
Q Consensus       484 Dg~i~lwd~~------------------~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~  545 (656)
                      ||.|++||++                  .++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++++..+..
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  242 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence            9999999953                  6678888889999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--Cee--------------------------------e------Eee
Q 006220          546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS--GRC--------------------------------V------TPL  585 (656)
Q Consensus       546 h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~--~~~--------------------------------~------~~~  585 (656)
                      |..+|.+++|+|++.+|++| .||.|++||+..  +..                                .      ..+
T Consensus       243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (372)
T 1k8k_C          243 ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  321 (372)
T ss_dssp             SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence            99999999999999988888 899999999987  421                                0      223


Q ss_pred             -eCCCccEEEEEEc-CCC---CEEEEEECCCcEEEEeCCCCCc
Q 006220          586 -MGHTSCVWTLAYS-CEG---SLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       586 -~~h~~~V~~l~~s-~~~---~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                       .+|...|++++|+ ++|   .+|++|+.||.|++||+.+++.
T Consensus       322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence             4899999999976 666   9999999999999999977544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-34  Score=304.37  Aligned_cols=260  Identities=17%  Similarity=0.248  Sum_probs=221.4

Q ss_pred             EEEeeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEc----CCCCc------ccccccCCCCCCCCCCccccCCCCCcee
Q 006220          345 YTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDM----AKLGQ------QAVSSGLQGENDTTPREDIIGPNGRKRS  413 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (656)
                      +..+.|.+.|+|++|+|+++ +||+|+.||.|++|++    .....      ......                  ....
T Consensus        39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~  100 (425)
T 1r5m_A           39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH------------------PFAL  100 (425)
T ss_dssp             CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC------------------CCCC
T ss_pred             eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc------------------cccc
Confidence            34566778999999999999 9999999999999999    54221      000000                  0000


Q ss_pred             eEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220          414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (656)
Q Consensus       414 ~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~  493 (656)
                      .....+|.+.|++++|+|++++|++|+.||.|++|| .++..+..+.+|..+|.+++|+|++.+|++++.||.|++||+.
T Consensus       101 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          101 SASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             C------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             cccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence            011234788999999999999999999999999999 5678888899999999999999999999999999999999999


Q ss_pred             CCceeEEecCCCCC---------------eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC
Q 006220          494 RIQPLRIMAGHLSD---------------VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD  558 (656)
Q Consensus       494 ~~~~~~~~~~~~~~---------------V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~  558 (656)
                      +++.+..+..+...               +.+++|+|++ .+++++.+|.|++||+++++.+..+.+|...|.+++|+|+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~  258 (425)
T 1r5m_A          180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT  258 (425)
T ss_dssp             TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred             CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence            99999988887776               9999999975 6889999999999999999999999999999999999999


Q ss_pred             CCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       559 g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      +++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++ ++++++.||.|++||+.++....
T Consensus       259 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~  324 (425)
T 1r5m_A          259 NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA  324 (425)
T ss_dssp             TTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE
Confidence            9999999999999999999999999999999999999999999 99999999999999998866443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-34  Score=311.43  Aligned_cols=263  Identities=14%  Similarity=0.276  Sum_probs=219.0

Q ss_pred             eeEEEE-eeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec
Q 006220          342 VSFYTF-INTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (656)
Q Consensus       342 ~~~~~~-~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  419 (656)
                      ....++ .+|.+.|+|++|+| ++++||+|+.||.|+|||+.......                       ........+
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----------------------~~~~~~~~~  109 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-----------------------VYSSSLTYD  109 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-----------------------CCSCSEEEE
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-----------------------ccceeeecc
Confidence            344556 56778999999999 99999999999999999986410000                       001111225


Q ss_pred             CccCEEEEEEccCCCEEEEEeCCCeEEEEecc---CCceeEEeeC------------CCccEEEEE--EecCCCEEEEEE
Q 006220          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTK---LNANLVCYKG------------HNYPVWDVQ--FNPQGHYFASSS  482 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~---~~~~~~~~~~------------h~~~V~~l~--~sp~~~~l~sgs  482 (656)
                      |.++|++++|+|++.+|++|+.||+|++||+.   ++.......+            +...+.++.  +++++.+|++|+
T Consensus       110 h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (437)
T 3gre_A          110 CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT  189 (437)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe
Confidence            99999999999999999999999999999994   5555443332            344566666  557899999999


Q ss_pred             CCCcEEEEECCCCceeEEecC--CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcC--
Q 006220          483 HDRTARIWSMDRIQPLRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSP--  557 (656)
Q Consensus       483 ~Dg~i~lwd~~~~~~~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp--  557 (656)
                      .||.|++||+++++++..+.+  |...|.+++|+|++++|++|+.||.|++||+++++++..+. .|..+|++++|+|  
T Consensus       190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  269 (437)
T 3gre_A          190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY  269 (437)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT
T ss_pred             CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecccc
Confidence            999999999999999999988  88999999999999999999999999999999999999886 7888999996654  


Q ss_pred             --CCCEEEEEECCCcEEEEeCCCCeeeEeeeC--------------------------CCccEEEEEEcCCCCEEEEEEC
Q 006220          558 --DGRYMASGDEDGTIMMWDLASGRCVTPLMG--------------------------HTSCVWTLAYSCEGSLLASGSA  609 (656)
Q Consensus       558 --~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~--------------------------h~~~V~~l~~s~~~~~l~sgs~  609 (656)
                        ++.+|++|+.||.|++||+.+++++..+.+                          |...|++++|+ ++.+|++|+.
T Consensus       270 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~  348 (437)
T 3gre_A          270 GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA  348 (437)
T ss_dssp             CTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG
T ss_pred             CCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC
Confidence              688999999999999999999998887764                          44568889999 7789999999


Q ss_pred             CCcEEEEeCCCCCceeecc
Q 006220          610 DCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       610 Dg~I~iWd~~~~~~~~~~~  628 (656)
                      ||.|++||+.+++......
T Consensus       349 d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          349 TSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             GTEEEEEETTCGGGCEEEE
T ss_pred             CCeEEEEECCCcccceEEe
Confidence            9999999999988765443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.9e-34  Score=302.10  Aligned_cols=272  Identities=16%  Similarity=0.282  Sum_probs=227.8

Q ss_pred             EeeCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE--eecC
Q 006220          347 FINTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL--YQGH  420 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~d----g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~h  420 (656)
                      ..+|.+.|+|++|+|+    ...+++++.++.|+||++......                         .....  ...|
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-------------------------~~~~~~~~~~~   68 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-------------------------RLLQSYVDADA   68 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-------------------------EEEEEEECSCT
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-------------------------EeeeeccccCC
Confidence            3468889999999984    556666667889999998752211                         11111  1237


Q ss_pred             ccCEEEEEEccC----CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCC
Q 006220          421 SGPVYSASFSPL----GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI  495 (656)
Q Consensus       421 ~~~V~~l~~spd----~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~  495 (656)
                      .+.|++++|+|+    +.+|++|+.||+|++||+.+++.+..+.+|..+|.+++|+| ++.+|++|+.||.|++||++++
T Consensus        69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  148 (366)
T 3k26_A           69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD  148 (366)
T ss_dssp             TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred             CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence            789999999999    66999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             ceeEEe---cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe----------------------------
Q 006220          496 QPLRIM---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI----------------------------  544 (656)
Q Consensus       496 ~~~~~~---~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~----------------------------  544 (656)
                      +.+..+   .+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.                            
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence            999888   6899999999999999999999999999999999876543333                            


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee--------------eEeeeCCCccEEEEEEcCC--CCEEEEEE
Q 006220          545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC--------------VTPLMGHTSCVWTLAYSCE--GSLLASGS  608 (656)
Q Consensus       545 ~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~--------------~~~~~~h~~~V~~l~~s~~--~~~l~sgs  608 (656)
                      +|...|.+++|+  +++|++++.||.|++||+.++..              +..+.+|...|++++|+|+  +++|++|+
T Consensus       229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~  306 (366)
T 3k26_A          229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN  306 (366)
T ss_dssp             SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred             CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence            399999999999  78999999999999999987744              7788899999999999999  99999999


Q ss_pred             CCCcEEEEeCCCCCceeecccccCCccccccccccCC--CCCeEEEEEcC
Q 006220          609 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK--STPVYSLQVLR  656 (656)
Q Consensus       609 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~--~~pv~sv~Ftr  656 (656)
                      .||.|++||+.++.....           .+..+..+  ..+|.+++|++
T Consensus       307 ~dg~i~vwd~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~  345 (366)
T 3k26_A          307 QVGKLYVWDLEVEDPHKA-----------KCTTLTHHKCGAAIRQTSFSR  345 (366)
T ss_dssp             TTSCEEEEECCSSSGGGC-----------EEEEECCTTCCSCEEEEEECT
T ss_pred             cCCcEEEEECCCCCCccc-----------cceEEcccccCCceEEEEeCC
Confidence            999999999988754321           11123333  56777777763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=321.37  Aligned_cols=277  Identities=7%  Similarity=0.035  Sum_probs=221.2

Q ss_pred             HhccceecCCCCCCce---eEEEEeeCCCCeEEEEEcCC------CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCC
Q 006220          327 DLRNRVHLSSAALPSV---SFYTFINTHNGLNCASISQD------GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND  397 (656)
Q Consensus       327 ~~~~~v~l~~~~~ps~---~~~~~~~~~~~V~~l~fs~d------g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~  397 (656)
                      .....+++|+......   ...++..|.+.|++++|+|+      +.+||+|+.||+|+||++..........       
T Consensus       180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-------  252 (524)
T 2j04_B          180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-------  252 (524)
T ss_dssp             --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-------
T ss_pred             CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-------
Confidence            4556888997544332   12456677789999999997      5799999999999999987532110000       


Q ss_pred             CCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc-eeEEeeCCCccEEEE--EEecC
Q 006220          398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDV--QFNPQ  474 (656)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~l--~~sp~  474 (656)
                             .   ........+.+|.+.|++++|+++ ..|++|+.||+|++||+.++. ....+.+|..+|+++  .|+|+
T Consensus       253 -------~---~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~  321 (524)
T 2j04_B          253 -------K---MCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDF  321 (524)
T ss_dssp             -------E---CCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTT
T ss_pred             -------e---eecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCC
Confidence                   0   001123457789999999999986 489999999999999999764 456688999999999  57888


Q ss_pred             C-CEEEEEECCCcEEEEECCCCceeEEecCCCC--CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeE
Q 006220          475 G-HYFASSSHDRTARIWSMDRIQPLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL  551 (656)
Q Consensus       475 ~-~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~--~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~  551 (656)
                      + .+|++|+.|++|++||+++++++..+.+|..  .|.+++|+|++..+++++.|++|++||++++.++..+.+|.+.|+
T Consensus       322 g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~  401 (524)
T 2j04_B          322 EDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTIT  401 (524)
T ss_dssp             SCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEE
T ss_pred             CCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceE
Confidence            7 8999999999999999998887777777654  588999999999999999999999999999999889999999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCC--------------------------------------------CeeeEeeeC
Q 006220          552 SLAMSPDGRYMASGDEDGTIMMWDLAS--------------------------------------------GRCVTPLMG  587 (656)
Q Consensus       552 ~l~~sp~g~~L~s~~~dg~I~iwD~~~--------------------------------------------~~~~~~~~~  587 (656)
                      +++|||+|++|++|+.||+|++||+..                                            +.++..+.+
T Consensus       402 sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~g  481 (524)
T 2j04_B          402 AIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDA  481 (524)
T ss_dssp             EEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------
T ss_pred             EEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecC
Confidence            999999999999999999999998521                                            112233456


Q ss_pred             CCccEEEEEEcCCC---CEEEEEECCCcEEEEeCCCC
Q 006220          588 HTSCVWTLAYSCEG---SLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       588 h~~~V~~l~~s~~~---~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      |...|++++|+|++   ..+|+|+.||.|+||++.-.
T Consensus       482 h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          482 HGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             CCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence            88899999999995   49999999999999998653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-33  Score=285.52  Aligned_cols=262  Identities=22%  Similarity=0.350  Sum_probs=230.9

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+.... .....+..|.+.|.+++|+|++++|++|+.||.|++|++....                        
T Consensus        38 dg~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~------------------------   92 (313)
T 3odt_A           38 DGTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS------------------------   92 (313)
T ss_dssp             TSEEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT------------------------
T ss_pred             CCcEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC------------------------
Confidence            356788876433 3445667888999999999999999999999999999987421                        


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcE
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTA  487 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i  487 (656)
                       .......+.+|...|.+++|  +++++++++.||.|++||  .+.....+..|..++.++.|+| ++.++++++.||.|
T Consensus        93 -~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  167 (313)
T 3odt_A           93 -GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTI  167 (313)
T ss_dssp             -TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCE
T ss_pred             -CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCE
Confidence             12234556789999999999  578999999999999999  6778888899999999999999 99999999999999


Q ss_pred             EEEECCCCceeEEecC-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220          488 RIWSMDRIQPLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       488 ~lwd~~~~~~~~~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~  566 (656)
                      ++||  ..+....+.. |...|.+++|+|++. +++|+.||.|++||+++++.+..+.+|...|++++|+|++ .|++++
T Consensus       168 ~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~  243 (313)
T 3odt_A          168 KLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCG  243 (313)
T ss_dssp             EEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEE
T ss_pred             EEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEe
Confidence            9999  4566777776 899999999999998 9999999999999999999999999999999999999999 588999


Q ss_pred             CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       567 ~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      .||.|++||+.+++++..+..|...|.+++|+|++. +++++.||.|++||+.+++...
T Consensus       244 ~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          244 EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence            999999999999999999999999999999999998 6679999999999998866543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.2e-33  Score=298.48  Aligned_cols=200  Identities=14%  Similarity=0.090  Sum_probs=174.4

Q ss_pred             CccCEEEEEEccCCCEEEE--EeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 006220          420 HSGPVYSASFSPLGDFILS--SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s--~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~  497 (656)
                      +...+.+++|||||+++++  ++.|++|+|||+.++..+..+. |...|.+++|+|+|.++++++.+ .+.+|+..++..
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~  209 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC  209 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcc
Confidence            3456889999999998765  4478999999999999888876 77789999999999999999854 566777666665


Q ss_pred             eEE--ecCCCCCeeEEEEcCCCCEEEEEECCC----cEEEEeCCCCee----EEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          498 LRI--MAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       498 ~~~--~~~~~~~V~~v~~~p~~~~l~tgs~dg----~V~iwd~~~~~~----~~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      +..  ..+|...|.+++|+|++.++++++.|+    .+++||+..+..    ...+.+|..+|++++|+|+|++||+|+.
T Consensus       210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~  289 (365)
T 4h5i_A          210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN  289 (365)
T ss_dssp             EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred             eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence            533  346888999999999999999999887    688999887654    3567789999999999999999999999


Q ss_pred             CCcEEEEeCCCCeeeEee-eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          568 DGTIMMWDLASGRCVTPL-MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       568 dg~I~iwD~~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      ||+|+|||+.+++++..+ .+|...|++++|||||++|+|||.|++|+|||+...
T Consensus       290 D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          290 DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999999885 689999999999999999999999999999999654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-33  Score=290.58  Aligned_cols=266  Identities=16%  Similarity=0.224  Sum_probs=235.7

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+.... ....++..|.+.|++++|+|++++|++|+.||.|++||+...                         
T Consensus        53 dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------------------------  106 (369)
T 3zwl_B           53 DSSASVWYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG-------------------------  106 (369)
T ss_dssp             SSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-------------------------
T ss_pred             CCEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------
Confidence            346788875443 345567789999999999999999999999999999998752                         


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCC-----CeEEEEeccCCc-----------eeEEeeCCCc--cEEEEE
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD-----TTIRLWSTKLNA-----------NLVCYKGHNY--PVWDVQ  470 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~D-----g~I~lwd~~~~~-----------~~~~~~~h~~--~V~~l~  470 (656)
                         .....+. |..+|.+++|+|+++++++++.+     |.|++||+....           ....+..|..  .+.+++
T Consensus       107 ---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (369)
T 3zwl_B          107 ---QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG  182 (369)
T ss_dssp             ---CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred             ---cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence               2223333 88899999999999999999999     999999988654           3445556666  899999


Q ss_pred             EecCCCEEEEEECCCcEEEEECCC-CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC
Q 006220          471 FNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM  549 (656)
Q Consensus       471 ~sp~~~~l~sgs~Dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~  549 (656)
                      |+|++.+|++++.||.|++||+++ ...+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+. +...
T Consensus       183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~  261 (369)
T 3zwl_B          183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCP  261 (369)
T ss_dssp             ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred             EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCC
Confidence            999999999999999999999998 78888999999999999999999999999999999999999999998887 7788


Q ss_pred             eEEEEEcCCCCEEEEEECCC--------------cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEE
Q 006220          550 ILSLAMSPDGRYMASGDEDG--------------TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL  615 (656)
Q Consensus       550 i~~l~~sp~g~~L~s~~~dg--------------~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i  615 (656)
                      +.+++|+|+++++++++.++              .+++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++
T Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i  341 (369)
T 3zwl_B          262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL  341 (369)
T ss_dssp             EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEE
Confidence            99999999999999999988              8999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCcee
Q 006220          616 WDVTTSTKVL  625 (656)
Q Consensus       616 Wd~~~~~~~~  625 (656)
                      |++..+....
T Consensus       342 w~~~~~~~~~  351 (369)
T 3zwl_B          342 HHFEKSYFDF  351 (369)
T ss_dssp             EEECHHHHTC
T ss_pred             EECccccchh
Confidence            9998765433

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.2e-32  Score=287.08  Aligned_cols=265  Identities=25%  Similarity=0.407  Sum_probs=228.5

Q ss_pred             ccceecCCCCC----CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220          329 RNRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (656)
Q Consensus       329 ~~~v~l~~~~~----ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (656)
                      ...+++|+...    ...+..++.+|...|++++|+|++++|++|+.|+.|++|+...                      
T Consensus        60 D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~----------------------  117 (340)
T 4aow_A           60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT----------------------  117 (340)
T ss_dssp             TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------
T ss_pred             CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecc----------------------
Confidence            45788886533    2455667888999999999999999999999999999999874                      


Q ss_pred             cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee-EEeeCCCccEEEEEEecCC--CEEEEE
Q 006220          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG--HYFASS  481 (656)
Q Consensus       405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~sp~~--~~l~sg  481 (656)
                            .........+...+..+.+++++.+|++|+.|+.+++||+...... ....+|...+.+++|++++  .+++++
T Consensus       118 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~  191 (340)
T 4aow_A          118 ------GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC  191 (340)
T ss_dssp             ------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred             ------cceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE
Confidence                  2344556678888999999999999999999999999998765543 3456789999999999864  578999


Q ss_pred             ECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCE
Q 006220          482 SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY  561 (656)
Q Consensus       482 s~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~  561 (656)
                      +.|++|++||+++.+.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++++..+..+ ..|.+++|+|++.+
T Consensus       192 ~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~  270 (340)
T 4aow_A          192 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYW  270 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSE
T ss_pred             cCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999988755 67999999998765


Q ss_pred             EEEEECCCcEEEEeCCCCeeeEeee---------CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          562 MASGDEDGTIMMWDLASGRCVTPLM---------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       562 L~s~~~dg~I~iwD~~~~~~~~~~~---------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      + +++.|+.|++||+.++..+..+.         +|...|++++|+|+|++|++|+.||.|+|||+.+|++
T Consensus       271 ~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          271 L-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             E-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred             e-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence            5 55569999999999887776553         6888999999999999999999999999999998763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.1e-34  Score=309.06  Aligned_cols=241  Identities=17%  Similarity=0.244  Sum_probs=212.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      +++++|+|++++|++|+.||.|++|++.....                            ...+..| ..+....|+|++
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~----------------------------~~~~~~~-~~~~~~~~~~~~  109 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG----------------------------SKMLKRA-DYTAVDTAKLQM  109 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEET----------------------------TTTSCSC-CEEEEEEECSSS
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccce----------------------------eeEEecC-CceEEEEEecCC
Confidence            56789999999999999999999999875211                            1112233 445556789999


Q ss_pred             CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEE
Q 006220          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW  513 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~  513 (656)
                      ++|++|+.||.|++||+.++.....+.+|..+|.+++|+|++.+|++|+.||+|++||+++++.+..+.+|...|.+++|
T Consensus       110 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  189 (420)
T 3vl1_A          110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI  189 (420)
T ss_dssp             CEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred             CEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence            99999999999999999999888888899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC---CCCeEE---------------------EEEcCCCCEEEEEECCC
Q 006220          514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGH---RSMILS---------------------LAMSPDGRYMASGDEDG  569 (656)
Q Consensus       514 ~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h---~~~i~~---------------------l~~sp~g~~L~s~~~dg  569 (656)
                      +|++++|++|+.||+|++||+++++++..+..|   ...+.+                     ++|+|+|++|++|+.||
T Consensus       190 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  269 (420)
T 3vl1_A          190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG  269 (420)
T ss_dssp             ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred             cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence            999999999999999999999999999988753   334444                     55578999999999999


Q ss_pred             cEEEEeCCCCeeeEeee-CCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCCc
Q 006220          570 TIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       570 ~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      .|++||+++++.+..+. .|...|++++|+|++. +|++|+.||.|++||+.++..
T Consensus       270 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          270 VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence            99999999998877775 5789999999999998 999999999999999998754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.4e-33  Score=296.34  Aligned_cols=265  Identities=22%  Similarity=0.344  Sum_probs=219.1

Q ss_pred             EEeeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          346 TFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      .+..|.+.|+|++|+| ++++||+|+.||.|+||++.............               ..........+|.+.|
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~v  102 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA---------------VCSIGRDHPDVHRYSV  102 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE---------------EEEECTTCTTCCSSCE
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc---------------cccccccccccCCCcE
Confidence            4567899999999999 99999999999999999998633211100000               0000001123699999


Q ss_pred             EEEEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC---CCEEEEEECCCcEEEEECCCCceeEE
Q 006220          425 YSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRIQPLRI  500 (656)
Q Consensus       425 ~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~---~~~l~sgs~Dg~i~lwd~~~~~~~~~  500 (656)
                      .+++|+| ++.+|++++.||.|++||+.++.....+. +...+.++.|+|.   +.++++|+.||.|++||+++++.+..
T Consensus       103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  181 (408)
T 4a11_B          103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI  181 (408)
T ss_dssp             EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred             EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence            9999999 77899999999999999999988887776 7778999999994   45999999999999999999999999


Q ss_pred             ecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCe-eEEEE---------------ecCCCCeEEEEEcCCCCEEE
Q 006220          501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGE-CVRIF---------------IGHRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~~~-~~~~~---------------~~h~~~i~~l~~sp~g~~L~  563 (656)
                      +.+|...|.+++|+|++. .+++|+.||.|++||++++. ++..+               .+|...|.+++|+|+|++|+
T Consensus       182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  261 (408)
T 4a11_B          182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL  261 (408)
T ss_dssp             ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred             ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence            999999999999999998 58999999999999998775 44444               57889999999999999999


Q ss_pred             EEECCCcEEEEeCCCC-----------------------------------------------eeeEeeeCCCccEEEEE
Q 006220          564 SGDEDGTIMMWDLASG-----------------------------------------------RCVTPLMGHTSCVWTLA  596 (656)
Q Consensus       564 s~~~dg~I~iwD~~~~-----------------------------------------------~~~~~~~~h~~~V~~l~  596 (656)
                      +++.||.|++||+.++                                               +++..+.+|.+.|++++
T Consensus       262 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~  341 (408)
T 4a11_B          262 TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCV  341 (408)
T ss_dssp             EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEE
Confidence            9999999999998754                                               34556678999999999


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220          597 YSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       597 ~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                      |+|++++|++|+.||.|++||+.+.+....
T Consensus       342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          342 FQSNFQELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             EETTTTEEEEEETTSCEEEEEECC------
T ss_pred             EcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence            999999999999999999999999876544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.3e-33  Score=301.04  Aligned_cols=261  Identities=16%  Similarity=0.189  Sum_probs=218.8

Q ss_pred             ccceecCCCCCCcee-EEEEeeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220          329 RNRVHLSSAALPSVS-FYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~-~~~~~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (656)
                      ...+++|+....... .+...+|.+.|++++|+| ++++|++|+.||.|++||+....                      
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----------------------  152 (383)
T 3ei3_B           95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV----------------------  152 (383)
T ss_dssp             TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE----------------------
T ss_pred             CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc----------------------
Confidence            457888877654433 333347899999999999 78999999999999999987410                      


Q ss_pred             CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEECCC
Q 006220          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDR  485 (656)
Q Consensus       407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~Dg  485 (656)
                          ........+|...|.+++|+|++++|++|+.||.|++||+ ++..+..+.+|...|.+++|+|++. +|++|+.|+
T Consensus       153 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  227 (383)
T 3ei3_B          153 ----IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA  227 (383)
T ss_dssp             ----EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             ----eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC
Confidence                1122223345689999999999999999999999999999 4778888999999999999999998 999999999


Q ss_pred             cEEEEECCC----CceeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-------------
Q 006220          486 TARIWSMDR----IQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-------------  547 (656)
Q Consensus       486 ~i~lwd~~~----~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-------------  547 (656)
                      +|++||+++    ...+..+ +|...|.+++|+| ++.+|++++.|+.|++||++++..+..+.+|.             
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (383)
T 3ei3_B          228 TVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT  306 (383)
T ss_dssp             EEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred             EEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence            999999987    5566666 6999999999999 99999999999999999999988877776553             


Q ss_pred             ----CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC--CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          548 ----SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       548 ----~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~--h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                          +.+..++|+|+|++  +|+.||.|++||+.+++++..+.+  |.+.+..++|+|++.+|++|+ ||.|+|||+.+
T Consensus       307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence                23444666666666  677899999999999999999987  457788889999999999997 99999999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.9e-33  Score=293.79  Aligned_cols=249  Identities=13%  Similarity=0.089  Sum_probs=218.6

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      ..|.+.|+|++|+|++++|++|+.||.|+||++.....                         ........+|...|.++
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-------------------------~~~~~~~~~~~~~v~~~   62 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-------------------------NVDLLQSLRYKHPLLCC   62 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-------------------------EEEEEEEEECSSCEEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-------------------------cccceeeeecCCceEEE
Confidence            36778999999999999999999999999999875210                         12234456899999999


Q ss_pred             EEccCCC-EEEEEeCCCeEEEEec-cCCceeEEeeC--CCccEEEEEEecCCCEEEEEECCCcEEEEECCC---------
Q 006220          428 SFSPLGD-FILSSSADTTIRLWST-KLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR---------  494 (656)
Q Consensus       428 ~~spd~~-~L~s~s~Dg~I~lwd~-~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~---------  494 (656)
                      +|+|+++ +|++|+.||.|++||+ .++. ...+.+  |...|.+++|+| +.+|++++.|+.|++||+++         
T Consensus        63 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  140 (342)
T 1yfq_A           63 NFIDNTDLQIYVGTVQGEILKVDLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             EEEESSSEEEEEEETTSCEEEECSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             EECCCCCcEEEEEcCCCeEEEEEeccCCc-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence            9999999 9999999999999999 7664 477788  999999999999 99999999999999999987         


Q ss_pred             CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-Ce--eEEEEecCCCCeEEEEEcC-CCCEEEEEECCCc
Q 006220          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GE--CVRIFIGHRSMILSLAMSP-DGRYMASGDEDGT  570 (656)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~--~~~~~~~h~~~i~~l~~sp-~g~~L~s~~~dg~  570 (656)
                      .+++..+. |...|.+++|+|++  +++++.|+.|++||+++ +.  .......|...+.+++|+| +++++++++.||.
T Consensus       141 ~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  217 (342)
T 1yfq_A          141 NLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             ESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             CCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence            66666666 88999999999987  99999999999999998 54  3445567888999999999 9999999999999


Q ss_pred             EEEEeCCCC------eeeEeeeCCCc---------cEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220          571 IMMWDLASG------RCVTPLMGHTS---------CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       571 I~iwD~~~~------~~~~~~~~h~~---------~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                      |++||+...      +....+..|..         .|.+++|+|++++|++|+.||.|++||+.+++....
T Consensus       218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  288 (342)
T 1yfq_A          218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN  288 (342)
T ss_dssp             EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh
Confidence            999999887      77888888865         999999999999999999999999999998765543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.3e-33  Score=303.63  Aligned_cols=264  Identities=25%  Similarity=0.440  Sum_probs=227.4

Q ss_pred             CceeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee
Q 006220          340 PSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ  418 (656)
Q Consensus       340 ps~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  418 (656)
                      +.........|.+.|++++|+|+ +.+||+|+.+|.|+||++........                  ..........+.
T Consensus       117 ~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------------------~~~~~~~~~~~~  178 (430)
T 2xyi_A          117 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------------------PSGECQPDLRLR  178 (430)
T ss_dssp             -CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------------------TTCCCCCSEEEE
T ss_pred             CceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------------------ccccCCCcEEec
Confidence            34445567889999999999997 78999999999999999975211100                  111234556778


Q ss_pred             cCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCce-------eEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEE
Q 006220          419 GHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARI  489 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~l  489 (656)
                      +|.+.|++++|+|++. +|++|+.||+|++|++.++..       ...+.+|...|.+++|+| ++.+|++++.||.|++
T Consensus       179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i  258 (430)
T 2xyi_A          179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI  258 (430)
T ss_dssp             CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE
Confidence            9999999999999998 999999999999999987432       456778999999999999 7889999999999999


Q ss_pred             EECCCC---ceeEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCCCC-EEE
Q 006220          490 WSMDRI---QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGR-YMA  563 (656)
Q Consensus       490 wd~~~~---~~~~~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~g~-~L~  563 (656)
                      ||+++.   +++..+..|...|++++|+|++. ++++|+.||.|++||+++ +.++..+.+|...|++++|+|+++ +|+
T Consensus       259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~  338 (430)
T 2xyi_A          259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA  338 (430)
T ss_dssp             EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred             EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE
Confidence            999987   57788889999999999999887 688999999999999998 577888999999999999999985 799


Q ss_pred             EEECCCcEEEEeCCC--------------CeeeEeeeCCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCCC
Q 006220          564 SGDEDGTIMMWDLAS--------------GRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       564 s~~~dg~I~iwD~~~--------------~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~~  621 (656)
                      +++.||.|+|||+..              ...+..+.+|...|++++|+|++. +|++++.||.|+||++...
T Consensus       339 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            999999999999987              356777789999999999999999 9999999999999999764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-34  Score=307.60  Aligned_cols=249  Identities=20%  Similarity=0.352  Sum_probs=218.1

Q ss_pred             CCeEEEEEcCCCC-EEEEE----------eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC
Q 006220          352 NGLNCASISQDGS-LVAGG----------FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (656)
Q Consensus       352 ~~V~~l~fs~dg~-~La~g----------~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  420 (656)
                      ..|.|++|+|+++ +||+|          +.||.|+||++......                          .......|
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------------~~~~~~~~   66 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------------KPIASLQV   66 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------------SCSCCCCC
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------------cEEEEEec
Confidence            3689999999987 99999          88999999998752110                          01112358


Q ss_pred             ccCEEEEEEccCCCEEEEEeCCCeEEEEeccC----CceeEEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 006220          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI  495 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~  495 (656)
                      ...|++++|+|++++|++|+.||.|++|++.+    ...+..+.+|..+|.+++|+|+ +.+|++++.||+|++||+.+.
T Consensus        67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  146 (416)
T 2pm9_A           67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC  146 (416)
T ss_dssp             SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred             CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence            89999999999999999999999999999987    4577888999999999999998 899999999999999999887


Q ss_pred             c------eeE---EecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEEecC------CCCeEEEEEcCCC
Q 006220          496 Q------PLR---IMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGH------RSMILSLAMSPDG  559 (656)
Q Consensus       496 ~------~~~---~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h------~~~i~~l~~sp~g  559 (656)
                      +      ...   ...+|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..|      ...|.+++|+|++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (416)
T 2pm9_A          147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN  226 (416)
T ss_dssp             SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred             ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence            6      332   23578999999999998 789999999999999999999999988877      7899999999997


Q ss_pred             -CEEEEEECCC---cEEEEeCCCC-eeeEeee-CCCccEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCCceee
Q 006220          560 -RYMASGDEDG---TIMMWDLASG-RCVTPLM-GHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       560 -~~L~s~~~dg---~I~iwD~~~~-~~~~~~~-~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                       .+|++++.|+   .|++||++++ .++..+. +|...|.+++|+| ++.+|++++.||.|++||+.+++....
T Consensus       227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~  300 (416)
T 2pm9_A          227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ  300 (416)
T ss_dssp             TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE
T ss_pred             CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee
Confidence             6999999998   9999999986 6777787 8999999999999 999999999999999999988765543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.7e-32  Score=298.49  Aligned_cols=261  Identities=21%  Similarity=0.410  Sum_probs=230.6

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+.... .+..++.+|.+.|++++|++++ +|++|+.||.|++||+.+                          
T Consensus       141 dg~i~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~--------------------------  192 (464)
T 3v7d_B          141 DKMIRVYDSINK-KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK--------------------------  192 (464)
T ss_dssp             TSCEEEEETTTT-EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT--------------------------
T ss_pred             CCcEEEEECCCC-cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC--------------------------
Confidence            457888876544 3556777899999999999988 999999999999999875                          


Q ss_pred             CCceeeEEeecCccCEEEEEEc--cCCCEEEEEeCCCeEEEEeccCCce-----------------------eEEeeCCC
Q 006220          409 GRKRSYTLYQGHSGPVYSASFS--PLGDFILSSSADTTIRLWSTKLNAN-----------------------LVCYKGHN  463 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~s--pd~~~L~s~s~Dg~I~lwd~~~~~~-----------------------~~~~~~h~  463 (656)
                        ......+.+|.++|.+++|+  +++.++++|+.||+|++||+.++..                       +..+.+|.
T Consensus       193 --~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (464)
T 3v7d_B          193 --GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  270 (464)
T ss_dssp             --TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred             --CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence              23556678899999999998  5778999999999999999987653                       44667888


Q ss_pred             ccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE
Q 006220          464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF  543 (656)
Q Consensus       464 ~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~  543 (656)
                      ..|.++  ++++.++++|+.||.|++||+.+++++..+.+|...|.+++|+|+++++++|+.||.|++||+++++++..+
T Consensus       271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  348 (464)
T 3v7d_B          271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  348 (464)
T ss_dssp             SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            888876  567899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          544 IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       544 ~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      .+|...|.+++|+  +++|++|+.||.|++||+.++...... .|...+..++|++++.++++|+ ||.|++||+.+++.
T Consensus       349 ~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~  424 (464)
T 3v7d_B          349 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL  424 (464)
T ss_dssp             CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred             eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence            9999999999998  689999999999999999988776655 3566778889999999999998 99999999999876


Q ss_pred             ee
Q 006220          624 VL  625 (656)
Q Consensus       624 ~~  625 (656)
                      +.
T Consensus       425 ~~  426 (464)
T 3v7d_B          425 VH  426 (464)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.9e-32  Score=299.62  Aligned_cols=258  Identities=26%  Similarity=0.462  Sum_probs=228.4

Q ss_pred             cCCCCCCceeEEEEeeCCCC-eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCce
Q 006220          334 LSSAALPSVSFYTFINTHNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR  412 (656)
Q Consensus       334 l~~~~~ps~~~~~~~~~~~~-V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (656)
                      .|.......+..++.+|.+. ++|+.|  ++++|++|+.||.|++||+.+                            ..
T Consensus       104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~----------------------------~~  153 (464)
T 3v7d_B          104 NWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN----------------------------KK  153 (464)
T ss_dssp             HHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT----------------------------TE
T ss_pred             hhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC----------------------------Cc
Confidence            44444444455678888887 466666  567999999999999999875                            34


Q ss_pred             eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEe--cCCCEEEEEECCCcEEEE
Q 006220          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN--PQGHYFASSSHDRTARIW  490 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~sgs~Dg~i~lw  490 (656)
                      ....+.+|.++|++++|+|++ .|++|+.||+|++||+.++..+..+.+|..+|.+++|+  +++.++++|+.||+|++|
T Consensus       154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw  232 (464)
T 3v7d_B          154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW  232 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred             EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence            566678999999999999987 99999999999999999999999999999999999999  477899999999999999


Q ss_pred             ECCCCce-----------------------eEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC
Q 006220          491 SMDRIQP-----------------------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR  547 (656)
Q Consensus       491 d~~~~~~-----------------------~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~  547 (656)
                      |+.+...                       +..+.+|...|.++  +++++++++|+.||.|++||+++++++..+.+|.
T Consensus       233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  310 (464)
T 3v7d_B          233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT  310 (464)
T ss_dssp             ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence            9987652                       45677888888887  5778999999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220          548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       548 ~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                      ..|.+++|+|++++|++|+.||.|++||+.+++++..+.+|...|.+++|+  +.+|++|+.||+|++||+.++.....
T Consensus       311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS  387 (464)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence            999999999999999999999999999999999999999999999999998  57999999999999999998765543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=293.49  Aligned_cols=255  Identities=20%  Similarity=0.328  Sum_probs=217.0

Q ss_pred             CceeEEEEeeCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE
Q 006220          340 PSVSFYTFINTHNGLNCASISQD---GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL  416 (656)
Q Consensus       340 ps~~~~~~~~~~~~V~~l~fs~d---g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (656)
                      |......+.+|.+.|+|++|+|+   |++|++|+.||.|+||++....                          ......
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--------------------------~~~~~~   81 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--------------------------QTIPKA   81 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--------------------------CEEEEE
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--------------------------ceeEEE
Confidence            33444567788999999999999   6999999999999999987411                          223366


Q ss_pred             eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEE--ecCCCEEEEEECCCcEEEEECCC
Q 006220          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF--NPQGHYFASSSHDRTARIWSMDR  494 (656)
Q Consensus       417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~--sp~~~~l~sgs~Dg~i~lwd~~~  494 (656)
                      +.+|.++|++++|+|++++|++|+.||+|++||+.++..+. ..+|..+|++++|  +|++.+|++++.||.|++||+++
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence            78899999999999999999999999999999999887665 5669999999999  88999999999999999999998


Q ss_pred             CceeEEecCCC-----------------------------------------CCeeEEEEcCCCCE----EEEEECCCcE
Q 006220          495 IQPLRIMAGHL-----------------------------------------SDVDCVRWHINCNY----IATGSSDKTV  529 (656)
Q Consensus       495 ~~~~~~~~~~~-----------------------------------------~~V~~v~~~p~~~~----l~tgs~dg~V  529 (656)
                      ++++..+..+.                                         ..+.++++.++...    +++|+.||.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i  240 (368)
T 3mmy_A          161 SNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV  240 (368)
T ss_dssp             SSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred             CcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE
Confidence            88776665442                                         23445555544433    9999999999


Q ss_pred             EEEeCCCC---eeEEEEecCCC------------CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEE
Q 006220          530 RLWDVSSG---ECVRIFIGHRS------------MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT  594 (656)
Q Consensus       530 ~iwd~~~~---~~~~~~~~h~~------------~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~  594 (656)
                      ++||++..   ..+..+.+|..            +|++++|+|++++|++|+.||.|++||+.+++++..+.+|...|++
T Consensus       241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  320 (368)
T 3mmy_A          241 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA  320 (368)
T ss_dssp             EEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEE
T ss_pred             EEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceE
Confidence            99999987   56777888776            7999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          595 LAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       595 l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      ++|+|++.+|++|+.|+..+.|++...
T Consensus       321 ~~~s~~g~~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          321 CCFNHNGNIFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             EEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred             EEECCCCCeEEEEecccccccccccCC
Confidence            999999999999999987666665443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7e-33  Score=339.83  Aligned_cols=252  Identities=25%  Similarity=0.389  Sum_probs=232.5

Q ss_pred             ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC
Q 006220          341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (656)
Q Consensus       341 s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  420 (656)
                      ......+.+|.+.|+|++|||+|++||+|+.||.|+|||+.+                            ......+.+|
T Consensus       605 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~----------------------------~~~~~~~~~h  656 (1249)
T 3sfz_A          605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET----------------------------GEKLLDIKAH  656 (1249)
T ss_dssp             CCCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------CCEEEEECCC
T ss_pred             ccceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------CCEEEEeccC
Confidence            444567788999999999999999999999999999999875                            2345667799


Q ss_pred             ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEEEEECCCCcee
Q 006220          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                      .+.|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|..+|++++|+|  ++.++++|+.||+|++||+++++++
T Consensus       657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~  736 (1249)
T 3sfz_A          657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR  736 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE
T ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh
Confidence            99999999999999999999999999999999999999999999999999999  5668999999999999999999999


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe----------------------------------
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI----------------------------------  544 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~----------------------------------  544 (656)
                      ..+.+|...|.+++|+|+++++++|+.||+|++||+.++.....+.                                  
T Consensus       737 ~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~  816 (1249)
T 3sfz_A          737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA  816 (1249)
T ss_dssp             EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred             heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence            9999999999999999999999999999999999998775543321                                  


Q ss_pred             ---------------------cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCE
Q 006220          545 ---------------------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL  603 (656)
Q Consensus       545 ---------------------~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~  603 (656)
                                           +|...|.+++|+|+++++++++.||.|++||+.++..+..+.+|.+.|++++|+|++.+
T Consensus       817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~  896 (1249)
T 3sfz_A          817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS  896 (1249)
T ss_dssp             ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCE
Confidence                                 67788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCcEEEEeCCC
Q 006220          604 LASGSADCTVKLWDVTT  620 (656)
Q Consensus       604 l~sgs~Dg~I~iWd~~~  620 (656)
                      |++++.||.|++|++.+
T Consensus       897 l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          897 FLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EEEEETTSCEEEEEHHH
T ss_pred             EEEEeCCCeEEEEEccc
Confidence            99999999999999753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-33  Score=327.72  Aligned_cols=251  Identities=22%  Similarity=0.383  Sum_probs=222.1

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+.+|.+.|+|++|+|++++|++|+.||.|+||++...                          .......+.+|.++|+
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--------------------------~~~~~~~l~~h~~~V~   57 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW   57 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT--------------------------EEEEEEEECCCSSCEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC--------------------------CCccceeccCCcCceE
Confidence            46789999999999999999999999999999998631                          1345667889999999


Q ss_pred             EEEEccC--CCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEEECCCC--ce
Q 006220          426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRI--QP  497 (656)
Q Consensus       426 ~l~~spd--~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~--~~  497 (656)
                      +++|+|+  +++|++|+.||+|++||+.++.  .+..+.+|..+|.+++|+|+  +.++++|+.||+|++||+++.  ..
T Consensus        58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~  137 (753)
T 3jro_A           58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS  137 (753)
T ss_dssp             EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC
T ss_pred             EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc
Confidence            9999988  8999999999999999999886  67778889999999999999  999999999999999999876  34


Q ss_pred             eEEecCCCCCeeEEEEcC-------------CCCEEEEEECCCcEEEEeCCCC----eeEEEEecCCCCeEEEEEcCC--
Q 006220          498 LRIMAGHLSDVDCVRWHI-------------NCNYIATGSSDKTVRLWDVSSG----ECVRIFIGHRSMILSLAMSPD--  558 (656)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p-------------~~~~l~tgs~dg~V~iwd~~~~----~~~~~~~~h~~~i~~l~~sp~--  558 (656)
                      ...+.+|...|.+++|+|             ++.++++|+.||.|++||++++    .+...+.+|.++|++++|+|+  
T Consensus       138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  217 (753)
T 3jro_A          138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  217 (753)
T ss_dssp             CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC
Confidence            556678999999999999             5899999999999999999887    566788899999999999999  


Q ss_pred             -CCEEEEEECCCcEEEEeCCCCe-----eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          559 -GRYMASGDEDGTIMMWDLASGR-----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       559 -g~~L~s~~~dg~I~iwD~~~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                       |++|++|+.||.|++||+.++.     .+.....|.+.|++++|+|+|.+|++|+.||.|++|++..+.
T Consensus       218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence             8999999999999999998864     333445688999999999999999999999999999998644

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.7e-33  Score=304.72  Aligned_cols=255  Identities=20%  Similarity=0.257  Sum_probs=210.6

Q ss_pred             EEeeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          346 TFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      ....|...|+|++|+| ++++||+|+.||.|+|||+....                          ......+.+|.++|
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~--------------------------~~~~~~~~gH~~~V  167 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--------------------------KPTFIKGIGAGGSI  167 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS--------------------------CCEEECCCSSSCCC
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC--------------------------ceeEEEccCCCCCE
Confidence            4567788999999999 57899999999999999987421                          22344567899999


Q ss_pred             EEEEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeC--CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220          425 YSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       425 ~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      ++++|+| ++.+|++|+.||+|++||++++........  +...+.+++|+|++.+|++|+.||.|++||++. +.+..+
T Consensus       168 ~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~  246 (435)
T 4e54_B          168 TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNL  246 (435)
T ss_dssp             CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCS
T ss_pred             EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEE
Confidence            9999998 678999999999999999986654433333  344678999999999999999999999999975 566778


Q ss_pred             cCCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCeeEEE---EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          502 AGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~~~~~~~---~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~  577 (656)
                      .+|...|.+++|+|++. ++++|+.|++|++||+++++....   ..+|..+|++++|+|+|++|++|+.||.|+|||+.
T Consensus       247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred             ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence            89999999999999876 788999999999999998765433   35799999999999999999999999999999999


Q ss_pred             CCeeeEeeeCCCc------cEEEEEEcCCCCEEEEEEC------------CCcEEEEeCCCCCceeec
Q 006220          578 SGRCVTPLMGHTS------CVWTLAYSCEGSLLASGSA------------DCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       578 ~~~~~~~~~~h~~------~V~~l~~s~~~~~l~sgs~------------Dg~I~iWd~~~~~~~~~~  627 (656)
                      ++.+...+..|..      .+....|+|++.++++++.            ++.|++||+.++......
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l  394 (435)
T 4e54_B          327 QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL  394 (435)
T ss_dssp             SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred             CCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence            9988887766642      2345678888877777653            357999999988766543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.9e-34  Score=304.89  Aligned_cols=263  Identities=16%  Similarity=0.114  Sum_probs=209.8

Q ss_pred             ccceecCCCCCCc-eeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220          329 RNRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (656)
Q Consensus       329 ~~~v~l~~~~~ps-~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (656)
                      ...+++|+..... .+..++.+|.+.|++++|+|++++|++|+.||.|+|||+....                       
T Consensus        32 d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~-----------------------   88 (377)
T 3dwl_C           32 TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG-----------------------   88 (377)
T ss_dssp             SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----------------------------
T ss_pred             CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC-----------------------
Confidence            3467777665443 4445667889999999999999999999999999999987521                       


Q ss_pred             CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc---eeEEeeC-CCccEEEEEEecCCCEEEEEEC
Q 006220          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKG-HNYPVWDVQFNPQGHYFASSSH  483 (656)
Q Consensus       408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~  483 (656)
                        .......+.+|.+.|.+++|+|++++|++|+.|++|++||+.++.   ....+.+ |...|.+++|+|++.+|++|+.
T Consensus        89 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C           89 --TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred             --ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence              012345567899999999999999999999999999999999877   3677777 9999999999999999999999


Q ss_pred             CCcEEEEECCC------------------CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee----EE
Q 006220          484 DRTARIWSMDR------------------IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC----VR  541 (656)
Q Consensus       484 Dg~i~lwd~~~------------------~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~----~~  541 (656)
                      ||+|++||+..                  ++++..+ +|...|.+++|+|++++|++|+.||.|++||+.+++.    +.
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  245 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALI  245 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECC
T ss_pred             CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeE
Confidence            99999999852                  3455556 8999999999999999999999999999999999987    78


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--e-------------------------e---------Eee
Q 006220          542 IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR--C-------------------------V---------TPL  585 (656)
Q Consensus       542 ~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~--~-------------------------~---------~~~  585 (656)
                      .+.+|..+|.+++|+|+|++|++|+.++.+ +|+.....  .                         .         ..+
T Consensus       246 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (377)
T 3dwl_C          246 TVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTF  324 (377)
T ss_dssp             CEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------
T ss_pred             eecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccc
Confidence            889999999999999999999998766655 67654211  0                         0         001


Q ss_pred             ----------------eCCCccEEEEEEcCC-CC---EEEEEECCCcEEEEeC
Q 006220          586 ----------------MGHTSCVWTLAYSCE-GS---LLASGSADCTVKLWDV  618 (656)
Q Consensus       586 ----------------~~h~~~V~~l~~s~~-~~---~l~sgs~Dg~I~iWd~  618 (656)
                                      ..|.+.|+++++.+. +.   .|+|||.||.|+|||+
T Consensus       325 ~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          325 RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                            138999999997654 33   6999999999999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.3e-32  Score=281.75  Aligned_cols=208  Identities=25%  Similarity=0.379  Sum_probs=186.6

Q ss_pred             EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC--ceeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEEEE
Q 006220          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW  490 (656)
Q Consensus       415 ~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lw  490 (656)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|++||+...  ..+..+.+|..+|++++|++  ++.+|++|+.||+|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            356789999999999999999999999999999999743  56788999999999999986  48999999999999999


Q ss_pred             ECCCCc--eeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCe--eEEEEecCCCCeEEEEEcCC------
Q 006220          491 SMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPD------  558 (656)
Q Consensus       491 d~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~~--~~~~~~~h~~~i~~l~~sp~------  558 (656)
                      |+++++  .+..+.+|...|.+++|+|+  +.+|++|+.|++|++||++++.  ....+.+|...|.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998763  56778889999999999997  8999999999999999998763  24667899999999999997      


Q ss_pred             -------CCEEEEEECCCcEEEEeCCCCe----eeEeeeCCCccEEEEEEcCCC---CEEEEEECCCcEEEEeCCCCC
Q 006220          559 -------GRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYSCEG---SLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       559 -------g~~L~s~~~dg~I~iwD~~~~~----~~~~~~~h~~~V~~l~~s~~~---~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                             +++|++|+.||.|++||++++.    ....+.+|...|.+++|+|++   .+|++|+.|++|+|||+.+..
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~  240 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ  240 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence                   5799999999999999998765    667788999999999999984   899999999999999997643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.5e-32  Score=307.35  Aligned_cols=251  Identities=18%  Similarity=0.255  Sum_probs=226.9

Q ss_pred             eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC-EEEE
Q 006220          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-VYSA  427 (656)
Q Consensus       349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~l  427 (656)
                      .|.+.|++++|+||+++||+|+ ++.|+||++.+..                        ........+.+|.+. |+++
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~------------------------~~~~~~~~~~~h~~~~v~~~   70 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGD------------------------SKVPPVVQFTGHGSSVVTTV   70 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSC------------------------CSSCSEEEECTTTTSCEEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCC------------------------CccccceEEecCCCceEEEE
Confidence            4678899999999999999997 8899999987420                        001345678899999 9999


Q ss_pred             EEcc--CCCEEEEEeCCCeEEEEeccCC--------ceeEEeeCCCccEEEEEEecCCCEEEEEECC----CcEEEEECC
Q 006220          428 SFSP--LGDFILSSSADTTIRLWSTKLN--------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMD  493 (656)
Q Consensus       428 ~~sp--d~~~L~s~s~Dg~I~lwd~~~~--------~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D----g~i~lwd~~  493 (656)
                      +|+|  ++++|++|+.||+|++||+.++        ..+..+..|..+|.+++|+|++.++++++.+    +.|++||  
T Consensus        71 ~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--  148 (615)
T 1pgu_A           71 KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--  148 (615)
T ss_dssp             EECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--
T ss_pred             EECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--
Confidence            9999  9999999999999999999754        6677888899999999999999999999987    6888888  


Q ss_pred             CCceeEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCeeEEEEecCCC---CeEEEEEcCC-CCEEEEEECC
Q 006220          494 RIQPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPD-GRYMASGDED  568 (656)
Q Consensus       494 ~~~~~~~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~---~i~~l~~sp~-g~~L~s~~~d  568 (656)
                      .++.+..+.+|...|.+++|+|++. .+++++.|+.|++||+.+++++..+.+|..   .|++++|+|+ +++|++++.|
T Consensus       149 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (615)
T 1pgu_A          149 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD  228 (615)
T ss_dssp             TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred             CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence            5678889999999999999999998 899999999999999999999999999999   9999999999 9999999999


Q ss_pred             CcEEEEeCCCCeeeEee-e---CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          569 GTIMMWDLASGRCVTPL-M---GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~-~---~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      |.|++||+.+++.+..+ .   .|...|.+++|+ ++.+|++++.||.|++||+.+++.....
T Consensus       229 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~  290 (615)
T 1pgu_A          229 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKW  290 (615)
T ss_dssp             CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            99999999999999998 6   899999999999 9999999999999999999987765543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-32  Score=295.35  Aligned_cols=247  Identities=18%  Similarity=0.326  Sum_probs=214.0

Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       353 ~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ...+++++|+...++ +|+.||.|+||++...+..                        ......+.+|.++|++++|+|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~------------------------~~~~~~~~~h~~~V~~~~~~p   91 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV------------------------DKNVPLVCGHTAPVLDIAWCP   91 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC------------------------CTTCCCBCCCSSCEEEEEECT
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC------------------------CCCCceEecCCCCEEEEEeCC
Confidence            345688888865544 5788999999998642110                        112344678999999999999


Q ss_pred             -CCCEEEEEeCCCeEEEEeccCC-------ceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEe-
Q 006220          432 -LGDFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM-  501 (656)
Q Consensus       432 -d~~~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~~~~~-  501 (656)
                       ++.+|++|+.||+|++||+.++       ..+..+.+|...|.+++|+|++ .+|++|+.||+|++||+++++.+..+ 
T Consensus        92 ~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  171 (402)
T 2aq5_A           92 HNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG  171 (402)
T ss_dssp             TCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe
Confidence             8999999999999999999987       5678899999999999999998 79999999999999999999999999 


Q ss_pred             -cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-ecCCCC-eEEEEEcCCCCEEEEE---ECCCcEEEEe
Q 006220          502 -AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSM-ILSLAMSPDGRYMASG---DEDGTIMMWD  575 (656)
Q Consensus       502 -~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~-i~~l~~sp~g~~L~s~---~~dg~I~iwD  575 (656)
                       .+|...|.+++|+|++++|++|+.||.|++||+++++.+..+ .+|.+. +.++.|+|+|++|++|   +.|+.|++||
T Consensus       172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd  251 (402)
T 2aq5_A          172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD  251 (402)
T ss_dssp             TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence             889999999999999999999999999999999999999988 788876 8999999999999999   7899999999


Q ss_pred             CCCCee-eEeee-CCCccEEEEEEcCCCCEEEE-EECCCcEEEEeCCCCCc
Q 006220          576 LASGRC-VTPLM-GHTSCVWTLAYSCEGSLLAS-GSADCTVKLWDVTTSTK  623 (656)
Q Consensus       576 ~~~~~~-~~~~~-~h~~~V~~l~~s~~~~~l~s-gs~Dg~I~iWd~~~~~~  623 (656)
                      ++++.. +.... .|...|.+++|+|++++|++ |+.||.|++||+.+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          252 TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             TTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             CccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            988764 33333 57788999999999999975 45799999999988764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-31  Score=288.68  Aligned_cols=247  Identities=21%  Similarity=0.280  Sum_probs=212.5

Q ss_pred             EEeeCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          346 TFINTHNG--LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       346 ~~~~~~~~--V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      ...++...  +.+++|++  ..+++++.||.|++|++....                           ........|.+.
T Consensus        86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~---------------------------~~~~~~~~~~~~  136 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGS---------------------------VSALAETDESTY  136 (401)
T ss_dssp             ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCC---------------------------EEEEEECCTTCC
T ss_pred             eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCc---------------------------EeEeeecCCCCC
Confidence            33345444  55666665  557778899999999987521                           111222348899


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC-CCceeEEec
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIMA  502 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~-~~~~~~~~~  502 (656)
                      |++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+  +++|++|+.||.|++||++ ....+..+.
T Consensus       137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  214 (401)
T 4aez_A          137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ  214 (401)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc
Confidence            9999999999999999999999999999999999999999999999994  6799999999999999998 566788888


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEE--CCCcEEEEeCCCC
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGD--EDGTIMMWDLASG  579 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~L~s~~--~dg~I~iwD~~~~  579 (656)
                      +|...|.+++|+|++++|++|+.||.|++||++++.++..+.+|...|.+++|+|++. ++++|+  .||.|++||+.++
T Consensus       215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence            9999999999999999999999999999999999999999999999999999999765 566654  7999999999999


Q ss_pred             eeeEeeeCCCccEEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCCce
Q 006220          580 RCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKV  624 (656)
Q Consensus       580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iWd~~~~~~~  624 (656)
                      +++..+. |...|.+++|+|++.++++++  .||.|++||+.++...
T Consensus       295 ~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~  340 (401)
T 4aez_A          295 ARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT  340 (401)
T ss_dssp             CEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred             CEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence            9988885 567899999999999999954  8999999999875443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.7e-33  Score=303.66  Aligned_cols=268  Identities=17%  Similarity=0.221  Sum_probs=217.5

Q ss_pred             hccceecCCCCCCc-eeEEEEeeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220          328 LRNRVHLSSAALPS-VSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (656)
Q Consensus       328 ~~~~v~l~~~~~ps-~~~~~~~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (656)
                      ....|++|+..... .+.+.+.+|.+.|+|++|+| ++.+|++|+.||+|+|||+....                     
T Consensus       140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~---------------------  198 (435)
T 4e54_B          140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI---------------------  198 (435)
T ss_dssp             TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE---------------------
T ss_pred             CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc---------------------
Confidence            35689999876553 45566778999999999998 68999999999999999986411                     


Q ss_pred             CCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEECC
Q 006220          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHD  484 (656)
Q Consensus       406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~D  484 (656)
                           .........+...+.+++|+|++.+|++|+.||+|++||++ +..+..+.+|..+|.+++|+|++. +|++|+.|
T Consensus       199 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d  272 (435)
T 4e54_B          199 -----LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVD  272 (435)
T ss_dssp             -----EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred             -----eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence                 11111222344568899999999999999999999999997 456777889999999999999875 78899999


Q ss_pred             CcEEEEECCCCceeEE---ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC------CeEEEEE
Q 006220          485 RTARIWSMDRIQPLRI---MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS------MILSLAM  555 (656)
Q Consensus       485 g~i~lwd~~~~~~~~~---~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~------~i~~l~~  555 (656)
                      ++|++||+++.+....   ..+|...|.+++|+|++++|++|+.||+|++||+.++.+...+..|..      .+....|
T Consensus       273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (435)
T 4e54_B          273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW  352 (435)
T ss_dssp             SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred             ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence            9999999987664433   357999999999999999999999999999999999998888776653      2345678


Q ss_pred             cCCCCEEEEEE------------CCCcEEEEeCCCCeeeEeee-CCCccEEEE-EEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          556 SPDGRYMASGD------------EDGTIMMWDLASGRCVTPLM-GHTSCVWTL-AYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       556 sp~g~~L~s~~------------~dg~I~iwD~~~~~~~~~~~-~h~~~V~~l-~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      +|++.++++++            .++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |++|+||++..+
T Consensus       353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred             cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence            88887777764            23579999999999988875 677888887 6999999999876 889999999886


Q ss_pred             Cc
Q 006220          622 TK  623 (656)
Q Consensus       622 ~~  623 (656)
                      +.
T Consensus       432 k~  433 (435)
T 4e54_B          432 RT  433 (435)
T ss_dssp             --
T ss_pred             ee
Confidence            53

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=9.6e-32  Score=292.25  Aligned_cols=261  Identities=29%  Similarity=0.576  Sum_probs=226.3

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      .++..+|+|++|  ++++|++|+.||.|++||+.+                            ......+.+|.++|.++
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~l  179 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT----------------------------LECKRILTGHTGSVLCL  179 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS----------------------------CCEEEEECCCSSCEEEE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC----------------------------CeEEEEEcCCCCcEEEE
Confidence            455677999887  799999999999999999875                            23456678999999999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee---EEecCC
Q 006220          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL---RIMAGH  504 (656)
Q Consensus       428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~---~~~~~~  504 (656)
                      +|  ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+  +.++++|+.||+|++||+.++...   ..+.+|
T Consensus       180 ~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  255 (435)
T 1p22_A          180 QY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH  255 (435)
T ss_dssp             EC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred             EE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence            99  68899999999999999999999999999999999999997  459999999999999999987765   677899


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEe
Q 006220          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP  584 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~  584 (656)
                      ...|.+++|  +++++++|+.||.|++||+++++++..+.+|...|.++.|+  ++++++|+.||.|++||+++++++..
T Consensus       256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~  331 (435)
T 1p22_A          256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV  331 (435)
T ss_dssp             SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            999999999  78899999999999999999999999999999999999995  78999999999999999999999999


Q ss_pred             eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEE
Q 006220          585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQV  654 (656)
Q Consensus       585 ~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~F  654 (656)
                      +.+|...|.+++|  ++.+|++|+.||.|++||+.++.....      ......+..+..+..+|.+++|
T Consensus       332 ~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~h~~~v~~l~~  393 (435)
T 1p22_A          332 LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA------PAGTLCLRTLVEHSGRVFRLQF  393 (435)
T ss_dssp             ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS------CTTTTEEEEECCCSSCCCCEEE
T ss_pred             EeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc------cccchheeeccCCCCCeEEEEe
Confidence            9999999999999  788999999999999999876542110      0011133445566667777666

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.9e-32  Score=288.78  Aligned_cols=234  Identities=29%  Similarity=0.489  Sum_probs=193.4

Q ss_pred             eeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE---------
Q 006220          412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS---------  482 (656)
Q Consensus       412 ~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs---------  482 (656)
                      .....+.+|.++|++++|+|++++|++|+.||+|++||+.++.....+..|...|.+++|+|+|.+|++|+         
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~  136 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN  136 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred             EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence            45677899999999999999999999999999999999999988888888888888888877766555554         


Q ss_pred             -----------------------------------------CCCcEEEEECCCCceeEEe-----cCCCCCeeEEEEcC-
Q 006220          483 -----------------------------------------HDRTARIWSMDRIQPLRIM-----AGHLSDVDCVRWHI-  515 (656)
Q Consensus       483 -----------------------------------------~Dg~i~lwd~~~~~~~~~~-----~~~~~~V~~v~~~p-  515 (656)
                                                               .|++|++||+.+++.+..+     .+|...|.+++|++ 
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  216 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL  216 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence                                                     4555555555555555555     57888999999987 


Q ss_pred             CCCEEEEEECCCcEEEEeCC-CCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC-----
Q 006220          516 NCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-----  589 (656)
Q Consensus       516 ~~~~l~tgs~dg~V~iwd~~-~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~-----  589 (656)
                      ++++|++|+.|++|++||++ .+.++..+.+|.+.|.+++|+|+|++|++|+.||+|++||+++++++..+..+.     
T Consensus       217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~  296 (380)
T 3iz6_a          217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN  296 (380)
T ss_dssp             SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred             CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence            88999999999999999998 567888999999999999999999999999999999999999999988876543     


Q ss_pred             --ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          590 --SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       590 --~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                        ..|++++|+|+|.+|++|+.||.|++||+..++.......           ....+..+|.+++|++
T Consensus       297 ~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----------~~~~h~~~v~~l~~s~  354 (380)
T 3iz6_a          297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT-----------LQNSHEGRISCLGLSS  354 (380)
T ss_dssp             SSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC-----------SCSSCCCCCCEEEECS
T ss_pred             ccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec-----------ccCCCCCceEEEEECC
Confidence              2489999999999999999999999999987765433211           1134556666666653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.9e-31  Score=286.15  Aligned_cols=258  Identities=27%  Similarity=0.536  Sum_probs=232.1

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+.... .+..++.+|.+.|++++|+  +++|++|+.||.|++||+..                          
T Consensus       138 dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~--------------------------  188 (445)
T 2ovr_B          138 DNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET--------------------------  188 (445)
T ss_dssp             TSCEEEEETTTC-CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--------------------------
T ss_pred             CCcEEEEECCCC-cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc--------------------------
Confidence            457888876543 3456778899999999997  67999999999999999875                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                        ......+.+|.+.|.++.|+  +..+++|+.||+|++||+.+++.+..+.+|..+|.+++|  ++.++++|+.||.|+
T Consensus       189 --~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~  262 (445)
T 2ovr_B          189 --GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVK  262 (445)
T ss_dssp             --TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEE
T ss_pred             --CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEE
Confidence              23556677899999999996  678999999999999999999999999999999999999  688999999999999


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      +||+++++++..+.+|...|.+++|  ++.++++|+.||.|++||+++++++..+.+|...+.++.++  +++|++|+.|
T Consensus       263 iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  338 (445)
T 2ovr_B          263 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNAD  338 (445)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETT
T ss_pred             EEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCC
Confidence            9999999999999999999999999  78899999999999999999999999999999999988875  6799999999


Q ss_pred             CcEEEEeCCCCeeeEeeeC---CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          569 GTIMMWDLASGRCVTPLMG---HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~~---h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      |.|++||+.+++++..+.+   |...|.+++|+  +.+|++|+.||.|++||+.+++.....
T Consensus       339 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             SCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence            9999999999999999886   88999999996  579999999999999999998766543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.2e-32  Score=295.91  Aligned_cols=272  Identities=15%  Similarity=0.214  Sum_probs=225.6

Q ss_pred             ccceecCCCCCCc---eeEEEEeeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220          329 RNRVHLSSAALPS---VSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (656)
Q Consensus       329 ~~~v~l~~~~~ps---~~~~~~~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (656)
                      ...+.+|+.....   .....+.+|.+.|++++|+| ++++||+|+.||.|+||++.......                 
T Consensus        56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~-----------------  118 (402)
T 2aq5_A           56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-----------------  118 (402)
T ss_dssp             SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-----------------
T ss_pred             CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-----------------
Confidence            3466677543321   12234567899999999999 99999999999999999987532110                 


Q ss_pred             cCCCCCceeeEEeecCccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEe--eCCCccEEEEEEecCCCEEEEE
Q 006220          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASS  481 (656)
Q Consensus       405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~sg  481 (656)
                          ........+.+|.+.|.+++|+|++ .+|++|+.||+|++||+.+++.+..+  .+|...|.+++|+|++.+|+++
T Consensus       119 ----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  194 (402)
T 2aq5_A          119 ----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS  194 (402)
T ss_dssp             ----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred             ----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence                0013456678999999999999998 69999999999999999999999888  7899999999999999999999


Q ss_pred             ECCCcEEEEECCCCceeEEe-cCCCCC-eeEEEEcCCCCEEEEE---ECCCcEEEEeCCCCee-EEEEe-cCCCCeEEEE
Q 006220          482 SHDRTARIWSMDRIQPLRIM-AGHLSD-VDCVRWHINCNYIATG---SSDKTVRLWDVSSGEC-VRIFI-GHRSMILSLA  554 (656)
Q Consensus       482 s~Dg~i~lwd~~~~~~~~~~-~~~~~~-V~~v~~~p~~~~l~tg---s~dg~V~iwd~~~~~~-~~~~~-~h~~~i~~l~  554 (656)
                      +.||.|++||+++++.+..+ .+|.+. +.++.|+|++.+|++|   +.|+.|++||++++.. +.... .|...+.+++
T Consensus       195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  274 (402)
T 2aq5_A          195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF  274 (402)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred             ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence            99999999999999999888 788776 8999999999999999   7899999999998764 33333 5778899999


Q ss_pred             EcCCCCEEEEE-ECCCcEEEEeCCCCee-eEeeeC--CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          555 MSPDGRYMASG-DEDGTIMMWDLASGRC-VTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       555 ~sp~g~~L~s~-~~dg~I~iwD~~~~~~-~~~~~~--h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      |+|++++|+++ +.||.|++||+.+++. +..+..  |...|.+++|+|++.++++  .++.+++|++.++..
T Consensus       275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            99999999754 4799999999998874 444443  5589999999999988775  567999999987643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.1e-31  Score=311.89  Aligned_cols=267  Identities=23%  Similarity=0.374  Sum_probs=237.2

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+.... ....++..|.+.|++++|+|++++||+|+.||.|+||++.+                          
T Consensus        34 ~g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--------------------------   86 (814)
T 3mkq_A           34 SGRVEIWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--------------------------   86 (814)
T ss_dssp             TSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--------------------------
T ss_pred             CCEEEEEECCCC-ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC--------------------------
Confidence            356888876543 34456778899999999999999999999999999999875                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC-ceeEEeeCCCccEEEEEEec-CCCEEEEEECCCc
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRT  486 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~  486 (656)
                        ......+.+|.+.|.+++|+|++++|++|+.||+|++||+.++ .....+.+|..+|.+++|+| ++..|++++.||+
T Consensus        87 --~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  164 (814)
T 3mkq_A           87 --GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (814)
T ss_dssp             --CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             --CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe
Confidence              2345667889999999999999999999999999999999987 66778889999999999999 8899999999999


Q ss_pred             EEEEECCCCceeEEecCCC-CCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220          487 ARIWSMDRIQPLRIMAGHL-SDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~-~~V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~  563 (656)
                      |++||+.++.+...+..+. ..+.+++|+|  ++.++++|+.||.|++||+++++++..+.+|...|++++|+|+|++|+
T Consensus       165 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  244 (814)
T 3mkq_A          165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII  244 (814)
T ss_dssp             EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred             EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            9999999888877776554 8899999999  999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCE-EEEEECCCcEEEEeCCCCCce
Q 006220          564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL-LASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       564 s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~-l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      +++.||.|++||+.+++.+..+..|...|++++|+|++.. +++++.|+.+.+|++......
T Consensus       245 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (814)
T 3mkq_A          245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPT  306 (814)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCC
T ss_pred             EEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCce
Confidence            9999999999999999999999999999999999999873 244455778999998775543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=9.9e-32  Score=292.16  Aligned_cols=255  Identities=26%  Similarity=0.558  Sum_probs=222.8

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+.... .+..++.+|.+.|+|++|  ++++|++|+.||.|++||+.+                          
T Consensus       152 dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~--------------------------  202 (435)
T 1p22_A          152 DNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT--------------------------  202 (435)
T ss_dssp             SSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--------------------------
T ss_pred             CCeEEEEeCCCC-eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--------------------------
Confidence            457788876543 345567789999999999  789999999999999999875                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee---EEeeCCCccEEEEEEecCCCEEEEEECCC
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~---~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg  485 (656)
                        ......+.+|.+.|.+++|+  +..+++|+.||+|++||+.++...   ..+.+|..+|.+++|  ++.++++|+.||
T Consensus       203 --~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg  276 (435)
T 1p22_A          203 --GEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR  276 (435)
T ss_dssp             --CCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             --CcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence              23456677899999999997  469999999999999999988765   667889999999999  688999999999


Q ss_pred             cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~  565 (656)
                      +|++||+++++.+..+.+|...|.+++|+  ++++++|+.||.|++||+++++++..+.+|...|.+++|  ++.+|++|
T Consensus       277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg  352 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG  352 (435)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred             eEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence            99999999999999999999999999994  679999999999999999999999999999999999999  68999999


Q ss_pred             ECCCcEEEEeCCCCe---------eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          566 DEDGTIMMWDLASGR---------CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       566 ~~dg~I~iwD~~~~~---------~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      +.||.|++||+.++.         ++..+.+|.+.|.+++|  ++.+|++|+.||+|++||+.+....
T Consensus       353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred             eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence            999999999997766         78889999999999999  6789999999999999999886544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-31  Score=291.79  Aligned_cols=265  Identities=13%  Similarity=0.106  Sum_probs=210.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC---cccccccCCCC----CC--CCCCccccCCC--------------
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLG---QQAVSSGLQGE----ND--TTPREDIIGPN--------------  408 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~---~~~~~~~~~~~----~~--~~~~~~~~~~~--------------  408 (656)
                      .++.|++|++||++|+++ .++.|++||+.++.   ...........    ..  ...........              
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468999999999977766 67899999987755   21111100000    00  00000000000              


Q ss_pred             ------CCceeeEEeecCccCEEEEEEccCCCEE-EEEeCCCeEEEEecc--CCceeEEee--CCCccEEEEEEecCCCE
Q 006220          409 ------GRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTK--LNANLVCYK--GHNYPVWDVQFNPQGHY  477 (656)
Q Consensus       409 ------~~~~~~~~l~~h~~~V~~l~~spd~~~L-~s~s~Dg~I~lwd~~--~~~~~~~~~--~h~~~V~~l~~sp~~~~  477 (656)
                            ..........+|.+.|++++|+|++++| ++|+.||+|++||+.  ++..+..+.  .|...|.+++|+|++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                  0000111234678899999999999996 899999999999999  888887776  56788999999999999


Q ss_pred             EEEEECCCcEEEEECCCCceeE----EecCCCCCeeEEEEcCC---CCEEEEEECCCcEEEEeCCCCeeEEE-EecCCCC
Q 006220          478 FASSSHDRTARIWSMDRIQPLR----IMAGHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSM  549 (656)
Q Consensus       478 l~sgs~Dg~i~lwd~~~~~~~~----~~~~~~~~V~~v~~~p~---~~~l~tgs~dg~V~iwd~~~~~~~~~-~~~h~~~  549 (656)
                      |++|+.+|.+++|++.+.....    .+.+|...|.+++|+|+   +++|++|+.|++|++||++++.++.. +.+|...
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~  243 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF  243 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence            9999999999999998776544    67789999999999999   99999999999999999999998887 5589999


Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC-------------------------CccEEEEEEcCCCCEE
Q 006220          550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-------------------------TSCVWTLAYSCEGSLL  604 (656)
Q Consensus       550 i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h-------------------------~~~V~~l~~s~~~~~l  604 (656)
                      |.+++|+ +|++|++|+.||.|++||+.+++++..+..+                         ...|.+++|+|++++|
T Consensus       244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred             eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence            9999999 9999999999999999999999988887632                         3579999999999999


Q ss_pred             EEEE-CCCcEEEEeC
Q 006220          605 ASGS-ADCTVKLWDV  618 (656)
Q Consensus       605 ~sgs-~Dg~I~iWd~  618 (656)
                      ++++ .|+.|+||++
T Consensus       323 ~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          323 AFFVEATKCIIILEM  337 (450)
T ss_dssp             EEEETTCSEEEEEEE
T ss_pred             EEEECCCCeEEEEEe
Confidence            9999 8999999999

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.5e-31  Score=323.75  Aligned_cols=267  Identities=24%  Similarity=0.418  Sum_probs=233.9

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+..... +..++.+|.+.|+|++|+|++++||+|+.||.|+|||+.+                          
T Consensus       636 d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--------------------------  688 (1249)
T 3sfz_A          636 DKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT--------------------------  688 (1249)
T ss_dssp             TSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------------------------
T ss_pred             CCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC--------------------------
Confidence            4578888765443 4557778999999999999999999999999999999875                          


Q ss_pred             CCceeeEEeecCccCEEEEEEcc--CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCc
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSP--LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~sp--d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~  486 (656)
                        ......+.+|.+.|.+++|+|  ++.++++|+.||+|++||+.++.++..+.+|..+|++++|+|++.++++|+.||+
T Consensus       689 --~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~  766 (1249)
T 3sfz_A          689 --GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT  766 (1249)
T ss_dssp             --CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred             --CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence              235566789999999999999  4558999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceeEEe-------------------------------------------------------cCCCCCeeEE
Q 006220          487 ARIWSMDRIQPLRIM-------------------------------------------------------AGHLSDVDCV  511 (656)
Q Consensus       487 i~lwd~~~~~~~~~~-------------------------------------------------------~~~~~~V~~v  511 (656)
                      |++||+.++.....+                                                       .+|...|.++
T Consensus       767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~  846 (1249)
T 3sfz_A          767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC  846 (1249)
T ss_dssp             EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred             EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence            999998765433221                                                       2678889999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--------------
Q 006220          512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA--------------  577 (656)
Q Consensus       512 ~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~--------------  577 (656)
                      +|+|++.++++|+.||.|++||+.++..+..+.+|.+.|++++|+|+|++|++++.||.|++||+.              
T Consensus       847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~  926 (1249)
T 3sfz_A          847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI  926 (1249)
T ss_dssp             EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence            999999999999999999999999999999999999999999999999999999999988888743              


Q ss_pred             -----------------------------------------------------------------CCeeeEeeeCCCccE
Q 006220          578 -----------------------------------------------------------------SGRCVTPLMGHTSCV  592 (656)
Q Consensus       578 -----------------------------------------------------------------~~~~~~~~~~h~~~V  592 (656)
                                                                                       +++.+..+.+|.+.|
T Consensus       927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A          927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp             EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred             eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence                                                                             233444556788999


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          593 WTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       593 ~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      ++++|+|+|++|++++.||.|++||+.++...
T Consensus      1007 ~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A         1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp             CCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred             EEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence            99999999999999999999999999887654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.1e-31  Score=296.58  Aligned_cols=273  Identities=15%  Similarity=0.177  Sum_probs=239.0

Q ss_pred             ccceecCCCCCC---ceeEEEEeeCCCC-eEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCc
Q 006220          329 RNRVHLSSAALP---SVSFYTFINTHNG-LNCASISQ--DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE  402 (656)
Q Consensus       329 ~~~v~l~~~~~p---s~~~~~~~~~~~~-V~~l~fs~--dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~  402 (656)
                      ...+.+|+...+   ......+.+|.+. |+|++|+|  ++++||+|+.||.|+||++........              
T Consensus        38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~--------------  103 (615)
T 1pgu_A           38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS--------------  103 (615)
T ss_dssp             TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE--------------
T ss_pred             CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccc--------------
Confidence            456788876533   1456677889999 99999999  999999999999999999863110000              


Q ss_pred             cccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCC----CeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-E
Q 006220          403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-Y  477 (656)
Q Consensus       403 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~  477 (656)
                            ........+.+|.++|.+++|+|++++|++++.+    +.|++||  ++..+..+.+|...|++++|+|++. .
T Consensus       104 ------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~  175 (615)
T 1pgu_A          104 ------VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMR  175 (615)
T ss_dssp             ------EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred             ------ccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcE
Confidence                  0123556677899999999999999999999988    6899998  5778888999999999999999998 8


Q ss_pred             EEEEECCCcEEEEECCCCceeEEecCCCC---CeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEE-e---cCCCC
Q 006220          478 FASSSHDRTARIWSMDRIQPLRIMAGHLS---DVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIF-I---GHRSM  549 (656)
Q Consensus       478 l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~---~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~-~---~h~~~  549 (656)
                      +++++.|+.|++||+.+.+.+..+.+|..   .|.+++|+|+ +++|++|+.||.|++||+++++.+..+ .   +|...
T Consensus       176 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  255 (615)
T 1pgu_A          176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG  255 (615)
T ss_dssp             EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred             EEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCc
Confidence            99999999999999999999999999999   9999999999 999999999999999999999999998 6   89999


Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC----CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH----TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       550 i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h----~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      |.+++|+ ++++|++++.||.|++||+.+++.+..+..+    ...+.++.|+ ++.++++++.||.|++||+.++....
T Consensus       256 v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~  333 (615)
T 1pgu_A          256 IFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLK  333 (615)
T ss_dssp             EEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEE
T ss_pred             eEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEE
Confidence            9999999 9999999999999999999999999998877    3678889886 88999999999999999998765443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.5e-30  Score=283.58  Aligned_cols=241  Identities=29%  Similarity=0.602  Sum_probs=218.6

Q ss_pred             EEeeCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          346 TFINTHNGL-NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       346 ~~~~~~~~V-~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      .+.+|.+.| +|+.  +++++|++|+.||.|++||+.+                            ......+.+|.++|
T Consensus       113 ~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~----------------------------~~~~~~~~~h~~~v  162 (445)
T 2ovr_B          113 VLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVT----------------------------GKCLRTLVGHTGGV  162 (445)
T ss_dssp             EEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTT----------------------------CCEEEECCCCSSCE
T ss_pred             EecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCC----------------------------CcEEEEEcCCCCCE
Confidence            467787764 5544  5689999999999999999875                            23456677999999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  504 (656)
                      .+++|+  +..+++|+.||+|++||+.+++.+..+.+|..+|.++.|+  +..+++|+.||+|++||+.+++.+..+.+|
T Consensus       163 ~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~  238 (445)
T 2ovr_B          163 WSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH  238 (445)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred             EEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            999998  6799999999999999999999999999999999999996  578999999999999999999999999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEe
Q 006220          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP  584 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~  584 (656)
                      ...|.+++|  +++++++|+.||.|++||+++++++..+.+|...|.++.|  ++.++++|+.||.|++||+.+++++..
T Consensus       239 ~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~  314 (445)
T 2ovr_B          239 VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT  314 (445)
T ss_dssp             SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            999999999  7889999999999999999999999999999999999999  789999999999999999999999999


Q ss_pred             eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220          585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       585 ~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                      +.+|...+.++.++  ++++++|+.||.|++||+.+++....
T Consensus       315 ~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~  354 (445)
T 2ovr_B          315 LTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQT  354 (445)
T ss_dssp             ECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            99999999988875  67999999999999999988765543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.8e-31  Score=276.26  Aligned_cols=255  Identities=15%  Similarity=0.162  Sum_probs=222.0

Q ss_pred             ccceecCCCCCCc--eeEEEEeeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEc-CCCCcccccccCCCCCCCCCCccc
Q 006220          329 RNRVHLSSAALPS--VSFYTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDM-AKLGQQAVSSGLQGENDTTPREDI  404 (656)
Q Consensus       329 ~~~v~l~~~~~ps--~~~~~~~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl-~~~~~~~~~~~~~~~~~~~~~~~~  404 (656)
                      ...+++|+.....  .....+..|...|++++|+|+++ +|++|+.||.|++|++ ...                     
T Consensus        32 d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---------------------   90 (342)
T 1yfq_A           32 DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP---------------------   90 (342)
T ss_dssp             TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---------------------
T ss_pred             CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC---------------------
Confidence            4567788654433  33455668899999999999999 9999999999999998 641                     


Q ss_pred             cCCCCCceeeEEeec--CccCEEEEEEccCCCEEEEEeCCCeEEEEeccC---------CceeEEeeCCCccEEEEEEec
Q 006220          405 IGPNGRKRSYTLYQG--HSGPVYSASFSPLGDFILSSSADTTIRLWSTKL---------NANLVCYKGHNYPVWDVQFNP  473 (656)
Q Consensus       405 ~~~~~~~~~~~~l~~--h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~---------~~~~~~~~~h~~~V~~l~~sp  473 (656)
                              ....+.+  |...|.+++|+| +..|++++.||.|++||+.+         ++.+..+. |...|.+++|+|
T Consensus        91 --------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           91 --------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             --------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             --------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence                    2245667  999999999999 99999999999999999987         66666666 889999999998


Q ss_pred             CCCEEEEEECCCcEEEEECCC-Cc--eeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC------eeEEEE
Q 006220          474 QGHYFASSSHDRTARIWSMDR-IQ--PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG------ECVRIF  543 (656)
Q Consensus       474 ~~~~l~sgs~Dg~i~lwd~~~-~~--~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~------~~~~~~  543 (656)
                      ++  +++++.|+.|++||+++ ..  .......|...|.+++|+| +++++++|+.||.|++||+..+      +....+
T Consensus       161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  238 (342)
T 1yfq_A          161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence            87  99999999999999988 44  3445557888999999999 9999999999999999999887      788888


Q ss_pred             ecCCC---------CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC-CccEEEEEEcCCCCEEEEEECCCc-
Q 006220          544 IGHRS---------MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGSADCT-  612 (656)
Q Consensus       544 ~~h~~---------~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~sgs~Dg~-  612 (656)
                      .+|..         .|.+++|+|++++|++|+.||.|++||+.+++++..+.+| .+.|++++  |++.+|++|+.||. 
T Consensus       239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~  316 (342)
T 1yfq_A          239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTF  316 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHH
T ss_pred             ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcc
Confidence            88865         9999999999999999999999999999999999999998 99999999  99999999999998 


Q ss_pred             EEEEeC
Q 006220          613 VKLWDV  618 (656)
Q Consensus       613 I~iWd~  618 (656)
                      .+.|..
T Consensus       317 ~~~~~~  322 (342)
T 1yfq_A          317 KTNAAI  322 (342)
T ss_dssp             HHCSSS
T ss_pred             cccccc
Confidence            555543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4e-32  Score=282.56  Aligned_cols=207  Identities=26%  Similarity=0.375  Sum_probs=179.4

Q ss_pred             EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEEEE
Q 006220          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW  490 (656)
Q Consensus       415 ~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lw  490 (656)
                      ..+.+|.++|++++|+|++++|++|+.|++|++||+.++.  .+..+.+|..+|++++|++  ++.+|++|+.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3467899999999999999999999999999999998775  4567889999999999986  48999999999999999


Q ss_pred             ECCCC--ceeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCee---EEEEecCCCCeEEEEEcCC-----
Q 006220          491 SMDRI--QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPD-----  558 (656)
Q Consensus       491 d~~~~--~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~~~---~~~~~~h~~~i~~l~~sp~-----  558 (656)
                      |++++  .....+.+|...|.+++|+|+  +.+|++|+.|++|++||++++..   ...+.+|...|.+++|+|+     
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            99876  456778899999999999997  78999999999999999987632   3455689999999999997     


Q ss_pred             ------------CCEEEEEECCCcEEEEeCCCC---eeeEeeeCCCccEEEEEEcCCC----CEEEEEECCCcEEEEeCC
Q 006220          559 ------------GRYMASGDEDGTIMMWDLASG---RCVTPLMGHTSCVWTLAYSCEG----SLLASGSADCTVKLWDVT  619 (656)
Q Consensus       559 ------------g~~L~s~~~dg~I~iwD~~~~---~~~~~~~~h~~~V~~l~~s~~~----~~l~sgs~Dg~I~iWd~~  619 (656)
                                  +++|++|+.|+.|++||+..+   +++..+.+|...|.+++|+|++    .+|++|+.||+|++|++.
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~  246 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD  246 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence                        478999999999999999765   4677888999999999999986    899999999999999997


Q ss_pred             CC
Q 006220          620 TS  621 (656)
Q Consensus       620 ~~  621 (656)
                      ..
T Consensus       247 ~~  248 (316)
T 3bg1_A          247 DA  248 (316)
T ss_dssp             ST
T ss_pred             Cc
Confidence            63

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-31  Score=312.14  Aligned_cols=295  Identities=14%  Similarity=0.154  Sum_probs=221.8

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+...... ..++ .+.+.|++++|+|++++|++|+.||.|++||+..........                +.
T Consensus        78 D~~v~lWd~~~~~~-~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i----------------~~  139 (902)
T 2oaj_A           78 KDTVYVLSLYSQKV-LTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL----------------DN  139 (902)
T ss_dssp             TCEEEEEETTTCSE-EEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE----------------CC
T ss_pred             cCeEEEEECCCCcE-EEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee----------------cc
Confidence            46788998765432 3333 467889999999999999999999999999987532110000                00


Q ss_pred             CCceee-EEeecCccCEEEEEEccC-CCEEEEEeCCCeEEEEeccCCceeEEeeCC------------------CccEEE
Q 006220          409 GRKRSY-TLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNANLVCYKGH------------------NYPVWD  468 (656)
Q Consensus       409 ~~~~~~-~~l~~h~~~V~~l~~spd-~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h------------------~~~V~~  468 (656)
                        .... ..+.+|.++|.+++|+|+ +..+++|+.||+| +||++++..+..+..|                  ...|++
T Consensus       140 --~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~  216 (902)
T 2oaj_A          140 --LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ  216 (902)
T ss_dssp             --HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE
T ss_pred             --ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEE
Confidence              0000 234679999999999996 4689999999999 9999999888887765                  467999


Q ss_pred             EEEecCCCEEEEEECCCcEEEEECCCCceeEE--ec---C-------------CCCCeeE--------------------
Q 006220          469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRI--MA---G-------------HLSDVDC--------------------  510 (656)
Q Consensus       469 l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~--~~---~-------------~~~~V~~--------------------  510 (656)
                      ++|+|+|.+|++|+.||+|++||+++++++..  +.   +             |...|.+                    
T Consensus       217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          217 SLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             EEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence            99999999999999999999999865443221  00   0             0001111                    


Q ss_pred             --------------------------------------------------------------------------------
Q 006220          511 --------------------------------------------------------------------------------  510 (656)
Q Consensus       511 --------------------------------------------------------------------------------  510 (656)
                                                                                                      
T Consensus       297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l  376 (902)
T 2oaj_A          297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI  376 (902)
T ss_dssp             STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred             CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------------EEEcCCCCEEEEEECC
Q 006220          511 ----------------------------------------------------------------VRWHINCNYIATGSSD  526 (656)
Q Consensus       511 ----------------------------------------------------------------v~~~p~~~~l~tgs~d  526 (656)
                                                                                      ++|+|++++|++|+.|
T Consensus       377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~D  456 (902)
T 2oaj_A          377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSN  456 (902)
T ss_dssp             EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETT
T ss_pred             EEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCC
Confidence                                                                            1224566778888888


Q ss_pred             CcEEEEeCCCCeeE--EEE----e-----cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----------------
Q 006220          527 KTVRLWDVSSGECV--RIF----I-----GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG----------------  579 (656)
Q Consensus       527 g~V~iwd~~~~~~~--~~~----~-----~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~----------------  579 (656)
                      ++|++||+.++...  ..+    .     +|...|.+++|+|+|++||+|+.||+|+|||+.++                
T Consensus       457 gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~  536 (902)
T 2oaj_A          457 GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEM  536 (902)
T ss_dssp             SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------------
T ss_pred             CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccce
Confidence            88888888776321  111    1     78889999999999999999999999999999766                


Q ss_pred             -----------------------------eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccc
Q 006220          580 -----------------------------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK  630 (656)
Q Consensus       580 -----------------------------~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~  630 (656)
                                                   +++..+.+|.+.|++++|||+| +||+|+.|++|++||+.....+...   
T Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~---  612 (902)
T 2oaj_A          537 NFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYME---  612 (902)
T ss_dssp             -CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEE---
T ss_pred             eeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEe---
Confidence                                         2467788899999999999999 9999999999999998765443210   


Q ss_pred             cCCcccccccccc-CCCCCeEEEEEc
Q 006220          631 SGTNRLRSLKTLP-TKSTPVYSLQVL  655 (656)
Q Consensus       631 ~~~~~~~~l~~~p-~~~~pv~sv~Ft  655 (656)
                             .+..+. .++..|.+|+|+
T Consensus       613 -------~~~~~~~gh~~~V~sv~Fs  631 (902)
T 2oaj_A          613 -------NIREISGAQSACVTCIEFV  631 (902)
T ss_dssp             -------EGGGTCSSCCCCEEEEEEE
T ss_pred             -------ehhHhccccccceEEEEEE
Confidence                   123454 788889999997

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=291.17  Aligned_cols=248  Identities=10%  Similarity=0.183  Sum_probs=211.2

Q ss_pred             eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---CCcccccccCCCCCCCCCCccccCCCCCceeeEEe--ec--Cc
Q 006220          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK---LGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--QG--HS  421 (656)
Q Consensus       349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~--h~  421 (656)
                      .|.+.|+|++|+|++++|++|+.||.|++||+..   .......                    .......+  ..  +.
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--------------------~~~~i~~~~~~~~~~~  168 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFL--------------------NCECIRKINLKNFGKN  168 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEE--------------------EEEEEEEEEGGGGSSC
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecc--------------------ccceeEEEEccCcccc
Confidence            5889999999999999999999999999999852   1110000                    00111111  12  66


Q ss_pred             cCEEEEE--EccCCCEEEEEeCCCeEEEEeccCCceeEEeeC--CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 006220          422 GPVYSAS--FSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (656)
Q Consensus       422 ~~V~~l~--~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~  497 (656)
                      ..+.++.  +++++.+|++|+.||+|++||+.+++.+..+.+  |...|.+++|+|++.+|++|+.||+|++||++++++
T Consensus       169 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  248 (437)
T 3gre_A          169 EYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL  248 (437)
T ss_dssp             CCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred             cCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence            7788888  668899999999999999999999999999988  889999999999999999999999999999999999


Q ss_pred             eEEec-CCCCCeeEEEEcC----CCCEEEEEECCCcEEEEeCCCCeeEEEEecC--------------------------
Q 006220          498 LRIMA-GHLSDVDCVRWHI----NCNYIATGSSDKTVRLWDVSSGECVRIFIGH--------------------------  546 (656)
Q Consensus       498 ~~~~~-~~~~~V~~v~~~p----~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h--------------------------  546 (656)
                      +..+. .|...|.+++|+|    ++.+|++|+.||.|++||+++++++..+.+|                          
T Consensus       249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  328 (437)
T 3gre_A          249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS  328 (437)
T ss_dssp             EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred             EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence            98886 7888999997664    6779999999999999999999999888754                          


Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC-------------------------------------CC
Q 006220          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG-------------------------------------HT  589 (656)
Q Consensus       547 ~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~-------------------------------------h~  589 (656)
                      ...|++++|+ ++++|++|+.||.|++||+.+++++..+.+                                     |.
T Consensus       329 ~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  407 (437)
T 3gre_A          329 LNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH  407 (437)
T ss_dssp             GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred             CCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence            4457888999 779999999999999999999887777765                                     88


Q ss_pred             ccEEEEEEcCC--CCEEEEEECCCcEEEEe
Q 006220          590 SCVWTLAYSCE--GSLLASGSADCTVKLWD  617 (656)
Q Consensus       590 ~~V~~l~~s~~--~~~l~sgs~Dg~I~iWd  617 (656)
                      ..|++++|+++  +.+|++|+.||.|+||+
T Consensus       408 ~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          408 DIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            99999999998  78999999999999995

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.4e-31  Score=286.66  Aligned_cols=287  Identities=16%  Similarity=0.238  Sum_probs=215.4

Q ss_pred             ccceecCCCCCCc----------eeEEEEeeCC------------CCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCC
Q 006220          329 RNRVHLSSAALPS----------VSFYTFINTH------------NGLNCASISQDG--SLVAGGFSDSSLKVWDMAKLG  384 (656)
Q Consensus       329 ~~~v~l~~~~~ps----------~~~~~~~~~~------------~~V~~l~fs~dg--~~La~g~~dg~I~Iwdl~~~~  384 (656)
                      ...+++|+.....          .+...+.+|.            +.|++++|+|++  .+|++|+.||.|++|++....
T Consensus        49 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~  128 (447)
T 3dw8_B           49 GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERD  128 (447)
T ss_dssp             TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEE
T ss_pred             CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEeccccc
Confidence            3567777654332          1455677787            889999999998  899999999999999987532


Q ss_pred             cccccccCCCCCCC----CCCccccCCC-------CCceee-EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccC
Q 006220          385 QQAVSSGLQGENDT----TPREDIIGPN-------GRKRSY-TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL  452 (656)
Q Consensus       385 ~~~~~~~~~~~~~~----~~~~~~~~~~-------~~~~~~-~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~  452 (656)
                      ..............    ........+.       ...... ....+|...|++++|+|++++|++| .||+|++||+.+
T Consensus       129 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~  207 (447)
T 3dw8_B          129 KRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEI  207 (447)
T ss_dssp             EEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTE
T ss_pred             CCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCC
Confidence            21110000000000    0000000000       000111 2246899999999999999999998 799999999984


Q ss_pred             Cc-eeE-------EeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCce----eEEecCCCC------------C
Q 006220          453 NA-NLV-------CYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQP----LRIMAGHLS------------D  507 (656)
Q Consensus       453 ~~-~~~-------~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~----~~~~~~~~~------------~  507 (656)
                      .. .+.       .+.+|...|.+++|+|++ .+|++|+.||+|++||+++++.    +..+.+|..            .
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (447)
T 3dw8_B          208 TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS  287 (447)
T ss_dssp             EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTC
T ss_pred             CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCce
Confidence            33 333       255799999999999998 9999999999999999998886    788888876            8


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeEEEEecCCCC---------------eEEEEEcCCCCEEEEEECCCcE
Q 006220          508 VDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSM---------------ILSLAMSPDGRYMASGDEDGTI  571 (656)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~~~---------------i~~l~~sp~g~~L~s~~~dg~I  571 (656)
                      |.+++|+|++++|++++. +.|++||+++ ++++..+.+|...               +..++|+|+|++|++|+.||.|
T Consensus       288 v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v  366 (447)
T 3dw8_B          288 ISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFF  366 (447)
T ss_dssp             EEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred             EEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEE
Confidence            999999999999999999 9999999997 8888889888642               3349999999999999999999


Q ss_pred             EEEeCCCCeeeEeee---------------------------------CCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          572 MMWDLASGRCVTPLM---------------------------------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       572 ~iwD~~~~~~~~~~~---------------------------------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      ++||+.+++.+. +.                                 .+...|.+++|+|++++||+++.++ +++|.-
T Consensus       367 ~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          367 RMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             EEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             EEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence            999999887653 22                                 2345788999999999999998775 778864


Q ss_pred             C
Q 006220          619 T  619 (656)
Q Consensus       619 ~  619 (656)
                      +
T Consensus       445 ~  445 (447)
T 3dw8_B          445 K  445 (447)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.8e-30  Score=277.64  Aligned_cols=257  Identities=22%  Similarity=0.394  Sum_probs=218.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      +++++||++ ++||+|. |++|+|||..++.                          ......+.+|...|++|+|+|+|
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~--------------------------~~~~~~~~~~~~~V~sv~fspdg  159 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGD--------------------------ILQLLQMEQPGEYISSVAWIKEG  159 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCC--------------------------EEEEEECCSTTCCEEEEEECTTS
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCC--------------------------EEEEEEecCCCCcEEEEEECCCC
Confidence            789999975 5888885 9999999987521                          12233456788999999999999


Q ss_pred             CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecCCCCCeeEEE
Q 006220          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCVR  512 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~~~~~V~~v~  512 (656)
                      ++|++|+.||+|++||+.+++.+..+.+|...+.+++|+  +.++++|+.|+.+++||.... ..+..+.+|...+.++.
T Consensus       160 ~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~  237 (420)
T 4gga_A          160 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR  237 (420)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence            999999999999999999999999999999999988875  679999999999999998764 45677889999999999


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCe----eEEEEecCCCCeEEEEEcCCCC-EEEEE--ECCCcEEEEeCCCCeeeEee
Q 006220          513 WHINCNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDGR-YMASG--DEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       513 ~~p~~~~l~tgs~dg~V~iwd~~~~~----~~~~~~~h~~~i~~l~~sp~g~-~L~s~--~~dg~I~iwD~~~~~~~~~~  585 (656)
                      |+|++.++++++.|+.|++||..+++    .+.....|...|.+++|+|++. +++++  +.|+.|++||+.+++++..+
T Consensus       238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~  317 (420)
T 4gga_A          238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV  317 (420)
T ss_dssp             ECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred             ecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence            99999999999999999999998765    3567788999999999999654 55554  47999999999999999888


Q ss_pred             eCCCccEEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          586 MGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       586 ~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      ..| ..+.++.|++++..+++++  .||.|+|||+.+++.+               ..+.+|..+|.+|+|++
T Consensus       318 ~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v---------------~~l~gH~~~V~~l~~sp  374 (420)
T 4gga_A          318 DAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV---------------AELKGHTSRVLSLTMSP  374 (420)
T ss_dssp             ECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE---------------EEECCCSSCEEEEEECT
T ss_pred             ccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE---------------EEEcCCCCCEEEEEEcC
Confidence            765 4688999999999988876  7899999999886643               34556777788888764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.5e-30  Score=275.08  Aligned_cols=209  Identities=25%  Similarity=0.395  Sum_probs=190.5

Q ss_pred             eEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEecc--CCceeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEE
Q 006220          414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARI  489 (656)
Q Consensus       414 ~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~l  489 (656)
                      ...+.+|.++|++++|+|++++|++|+.||+|++|++.  ++..+..+.+|..+|++++|+++  +.+|++|+.||.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            45678999999999999999999999999999999998  55667788899999999999977  999999999999999


Q ss_pred             EECCCCc--eeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCe--eEEEEecCCCCeEEEEEcC------
Q 006220          490 WSMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSP------  557 (656)
Q Consensus       490 wd~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~~--~~~~~~~h~~~i~~l~~sp------  557 (656)
                      ||+.+++  .+..+.+|...|.+++|+|+  +.+|++++.||.|++||++++.  ....+.+|...|.+++|+|      
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            9999887  77788889999999999999  9999999999999999999873  4556778999999999999      


Q ss_pred             -------CCCEEEEEECCCcEEEEeCCCCe----eeEeeeCCCccEEEEEEcCC---CCEEEEEECCCcEEEEeCCCCC
Q 006220          558 -------DGRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYSCE---GSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       558 -------~g~~L~s~~~dg~I~iwD~~~~~----~~~~~~~h~~~V~~l~~s~~---~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                             ++.+|++|+.||.|++||++++.    .+..+.+|...|.+++|+|+   +.+|++++.||.|++||+.++.
T Consensus       164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence                   69999999999999999998764    45677789999999999999   8999999999999999998864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=6.5e-30  Score=270.47  Aligned_cols=237  Identities=13%  Similarity=0.162  Sum_probs=192.2

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      +...|.+.|+|++|||||++||+|+.+| ++||++...                            .....  .+...+.
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~----------------------------~~~~~--~~~~~~~   62 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV----------------------------AHIMS--QEMRHLS   62 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE----------------------------EEEEE--EECSCCC
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc----------------------------ceeee--eecCCeE
Confidence            4567889999999999999999997765 789997641                            11111  1222477


Q ss_pred             EEEEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecC
Q 006220          426 SASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAG  503 (656)
Q Consensus       426 ~l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~  503 (656)
                      .+++.++++.+ ++++.|++|++||+.+++.+..+. +..+|.+++|+++.  ++++ .|+.|++||+.+. +.+..+..
T Consensus        63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~  138 (355)
T 3vu4_A           63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR  138 (355)
T ss_dssp             EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred             EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc
Confidence            88898888877 577888999999999999988887 66799999998764  4444 4789999999987 66555544


Q ss_pred             CCCCeeEEEEcCCCCEEEE--EECCCcEEEEeCCCCe----------------eEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220          504 HLSDVDCVRWHINCNYIAT--GSSDKTVRLWDVSSGE----------------CVRIFIGHRSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~t--gs~dg~V~iwd~~~~~----------------~~~~~~~h~~~i~~l~~sp~g~~L~s~  565 (656)
                         ....+++++  .++++  |+.||.|++||+.++.                ++..+.+|.++|++++|+|+|++|++|
T Consensus       139 ---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~  213 (355)
T 3vu4_A          139 ---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC  213 (355)
T ss_dssp             ---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence               445566777  56666  5789999999999876                278889999999999999999999999


Q ss_pred             ECCCc-EEEEeCCCCeeeEeee-C-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          566 DEDGT-IMMWDLASGRCVTPLM-G-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       566 ~~dg~-I~iwD~~~~~~~~~~~-~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      +.||+ |++||+.+++++..+. + |.+.|++++|+|++++|++++.|++|++||+..+.
T Consensus       214 s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          214 SQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             ETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            99998 9999999999999998 5 99999999999999999999999999999998764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-30  Score=274.88  Aligned_cols=234  Identities=14%  Similarity=0.091  Sum_probs=192.9

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEE
Q 006220          359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILS  438 (656)
Q Consensus       359 fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s  438 (656)
                      +.+++.+|++|+.||.|++||+.....                            ...+.  ...|.++.|+|+   +++
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~----------------------------~~~~~--~~~v~~~~~~~~---~~s   90 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKT----------------------------ITTIT--TPNPRTGGEHPA---IIS   90 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSC----------------------------EEEEE--EECCCTTCCCCS---EEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcE----------------------------EEEEe--cCCceeeeeCCc---eEE
Confidence            446789999999999999999875221                            11122  467888889887   999


Q ss_pred             EeCCCeEEEEecc---------CCceeEEee-CCCccEEEEEEec--CCCEEEEEECCCcEEEEECCCCceeEEec-CCC
Q 006220          439 SSADTTIRLWSTK---------LNANLVCYK-GHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMA-GHL  505 (656)
Q Consensus       439 ~s~Dg~I~lwd~~---------~~~~~~~~~-~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-~~~  505 (656)
                      |+.|++|++|+..         ++..+..+. +|..+|.+++|+|  ++.+|++|+.||+|++||+++++.+.... .|.
T Consensus        91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~  170 (343)
T 3lrv_A           91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD  170 (343)
T ss_dssp             ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred             ecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence            9999999999765         444444444 6778999999999  99999999999999999999998877764 455


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeE-EEEec-CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV-RIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~-~~~~~-h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~  583 (656)
                      ..|.+++|+|++.+|++|+.||.|++||+++++.+ ..+.+ |.++|++++|+|+|.+|++++ |+.|++||+++++.+.
T Consensus       171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~  249 (343)
T 3lrv_A          171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL  249 (343)
T ss_dssp             CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce
Confidence            58999999999999999999999999999999988 78888 999999999999999999999 5599999999987766


Q ss_pred             eeeC---CCccEE--EEEEcCCCCEEEEEEC-CCcEEEEeCCCCCceee
Q 006220          584 PLMG---HTSCVW--TLAYSCEGSLLASGSA-DCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       584 ~~~~---h~~~V~--~l~~s~~~~~l~sgs~-Dg~I~iWd~~~~~~~~~  626 (656)
                      .+..   |...+.  +++|+|+|++|++++. |+.|+||++........
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~  298 (343)
T 3lrv_A          250 AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT  298 (343)
T ss_dssp             SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred             eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE
Confidence            5543   434444  6999999999999998 99999999977655443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=6.2e-30  Score=277.82  Aligned_cols=242  Identities=19%  Similarity=0.379  Sum_probs=204.8

Q ss_pred             eEEeecCccCEEEEEEccC-CCEEEEEeCCCeEEEEeccC----------CceeEEeeCCCccEEEEEEecCCC-EEEEE
Q 006220          414 YTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQGH-YFASS  481 (656)
Q Consensus       414 ~~~l~~h~~~V~~l~~spd-~~~L~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~l~~sp~~~-~l~sg  481 (656)
                      .....+|.+.|++++|+|+ +.+|++++.||.|++|++..          ...+..+.+|...|++++|+|++. +|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            4566789999999999997 67899999999999999987          567888899999999999999988 99999


Q ss_pred             ECCCcEEEEECCCCce-------eEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC---eeEEEEecCCCCe
Q 006220          482 SHDRTARIWSMDRIQP-------LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMI  550 (656)
Q Consensus       482 s~Dg~i~lwd~~~~~~-------~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~---~~~~~~~~h~~~i  550 (656)
                      +.||+|++|++.....       ...+.+|...|.+++|+| ++.+|++++.||.|++||++++   ..+..+..|...|
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999987322       566778999999999999 7889999999999999999987   5777888999999


Q ss_pred             EEEEEcCCCC-EEEEEECCCcEEEEeCCC-CeeeEeeeCCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCCceeec
Q 006220          551 LSLAMSPDGR-YMASGDEDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       551 ~~l~~sp~g~-~L~s~~~dg~I~iwD~~~-~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      ++++|+|++. +|++|+.||.|++||+++ +.++..+.+|.+.|++++|+|++. +|++++.||.|+|||+.........
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence            9999999987 788999999999999998 567888999999999999999984 7999999999999999874332211


Q ss_pred             ccccCCccccccccccCCCCCeEEEEEcC
Q 006220          628 EEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       628 ~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      .. ........+..+..+..+|.+++|++
T Consensus       361 ~~-~~~~~~~~~~~~~~h~~~v~~~~~~p  388 (430)
T 2xyi_A          361 ED-AEDGPPELLFIHGGHTAKISDFSWNP  388 (430)
T ss_dssp             HH-HHHCCTTEEEECCCCSSCEEEEEECS
T ss_pred             cc-cccCCcceEEEcCCCCCCceEEEECC
Confidence            10 01112234556667777888888864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.8e-30  Score=301.62  Aligned_cols=243  Identities=14%  Similarity=0.166  Sum_probs=207.1

Q ss_pred             EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      .....+|.+.|+|++|+|++++||+|+.||.|+||+....                             .......|..+
T Consensus        10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-----------------------------~~~~~~~~~~~   60 (902)
T 2oaj_A           10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-----------------------------EVVIKLEDRSA   60 (902)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-----------------------------EEEEECSSCCC
T ss_pred             cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-----------------------------EEEEEcCCCCC
Confidence            3455688999999999999999999999999999997531                             11222357889


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee-----
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-----  498 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~-----  498 (656)
                      |.+++|+| +++|++++.|++|++||+.+++++..+. |...|++++|+|++.++++|+.||+|++||+++.+..     
T Consensus        61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~  138 (902)
T 2oaj_A           61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLD  138 (902)
T ss_dssp             EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceec
Confidence            99999999 8899999999999999999999888886 6689999999999999999999999999999987653     


Q ss_pred             ------EEecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEEecC------------------CCCeEEE
Q 006220          499 ------RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGH------------------RSMILSL  553 (656)
Q Consensus       499 ------~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h------------------~~~i~~l  553 (656)
                            ..+.+|.+.|.+++|+|+ +..+++|+.||.| +||++++++++.+..|                  ...|+++
T Consensus       139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v  217 (902)
T 2oaj_A          139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQS  217 (902)
T ss_dssp             CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEE
T ss_pred             cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEE
Confidence                  223578999999999996 5789999999999 9999999999988766                  4779999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCeeeEe--e---eC-------------CCccEEEEEEc----CCC-CEEEEEECC
Q 006220          554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTP--L---MG-------------HTSCVWTLAYS----CEG-SLLASGSAD  610 (656)
Q Consensus       554 ~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~--~---~~-------------h~~~V~~l~~s----~~~-~~l~sgs~D  610 (656)
                      +|+|+|++|++|+.||.|++||+++++++..  +   ..             |...|++++|+    |++ .+|++|+.|
T Consensus       218 ~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          218 LYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             EECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            9999999999999999999999999987753  2   12             34579999995    443 567888766


Q ss_pred             -----CcEEEEeC
Q 006220          611 -----CTVKLWDV  618 (656)
Q Consensus       611 -----g~I~iWd~  618 (656)
                           +.+.+|++
T Consensus       298 ~~~~~~~v~~~~~  310 (902)
T 2oaj_A          298 SRGDNQSLTMIDL  310 (902)
T ss_dssp             TTSSCCCEEEEEE
T ss_pred             CCCCCceEEEEec
Confidence                 37899985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=5.7e-31  Score=282.62  Aligned_cols=246  Identities=14%  Similarity=0.126  Sum_probs=181.9

Q ss_pred             eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (656)
Q Consensus       349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  428 (656)
                      .+...+....+++++.+||+|+.|++|+|||+.......                       ......+.+|.+.|++++
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~-----------------------~~~~~~~~gH~~~v~~v~  143 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIIT-----------------------QHVLGGKSGHHNFVNDID  143 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEE-----------------------EEEECTTTSCSSCEEEEE
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccce-----------------------eeeecccCCCCCceEEEE
Confidence            344445666677889999999999999999987521110                       122344679999999999


Q ss_pred             Ecc--------CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCceeE
Q 006220          429 FSP--------LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLR  499 (656)
Q Consensus       429 ~sp--------d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~~~  499 (656)
                      |+|        ++++|+||+.|++|+|||+.++.++....+|..+|.+++|+|++ .+|++|+.||+|++||+.+++...
T Consensus       144 ~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~  223 (393)
T 4gq1_A          144 IADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAE  223 (393)
T ss_dssp             EEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---
T ss_pred             EccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccc
Confidence            998        78899999999999999999888888888899999999999987 479999999999999998765332


Q ss_pred             E-------------------------ecCCCCCeeEEEEc-CCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEE
Q 006220          500 I-------------------------MAGHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL  553 (656)
Q Consensus       500 ~-------------------------~~~~~~~V~~v~~~-p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l  553 (656)
                      .                         ..+|...|.++.|+ |+++.|++++.|+++++||+.++.....+..|...+..+
T Consensus       224 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~  303 (393)
T 4gq1_A          224 ENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPK  303 (393)
T ss_dssp             -------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------
T ss_pred             cccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccE
Confidence            1                         23677889999987 799999999999999999999888777666665555444


Q ss_pred             EEcC--------------------CCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcE
Q 006220          554 AMSP--------------------DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV  613 (656)
Q Consensus       554 ~~sp--------------------~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I  613 (656)
                      .++|                    ++.++++|+.||.|++||+.+++++....+|..+|++++|+|+|++||+++.+| +
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v  382 (393)
T 4gq1_A          304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-V  382 (393)
T ss_dssp             CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-E
T ss_pred             EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-e
Confidence            3333                    344677888999999999999999988889999999999999999999998766 5


Q ss_pred             EEEeC
Q 006220          614 KLWDV  618 (656)
Q Consensus       614 ~iWd~  618 (656)
                      .+|.+
T Consensus       383 ~lvrL  387 (393)
T 4gq1_A          383 LLTRL  387 (393)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            56655

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=5.7e-30  Score=266.10  Aligned_cols=242  Identities=19%  Similarity=0.296  Sum_probs=203.9

Q ss_pred             EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC----ceeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEE
Q 006220          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTAR  488 (656)
Q Consensus       415 ~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~  488 (656)
                      ..+.+|.++|++++|+|++++|++|+.||+|++||+.++    .....+.+|..+|.+++|+|  ++.+|++|+.||+|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            346789999999999999999999999999999999876    35667789999999999999  699999999999999


Q ss_pred             EEECCCC---------ceeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCeeEEEEe-------------
Q 006220          489 IWSMDRI---------QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFI-------------  544 (656)
Q Consensus       489 lwd~~~~---------~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~~~~~~~~-------------  544 (656)
                      +||++.+         +++..+.+|...|.+++|+|+  +.+|++|+.||.|++||+++++.+..+.             
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999876         557888899999999999999  9999999999999999999887554332             


Q ss_pred             cCCCCeEEEEEcCC---CCEEEEEECCCcEEEEeCCCCee--eEeeeCCCccEEEEEEcCCC----CEEEEEECCCcEEE
Q 006220          545 GHRSMILSLAMSPD---GRYMASGDEDGTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEG----SLLASGSADCTVKL  615 (656)
Q Consensus       545 ~h~~~i~~l~~sp~---g~~L~s~~~dg~I~iwD~~~~~~--~~~~~~h~~~V~~l~~s~~~----~~l~sgs~Dg~I~i  615 (656)
                      +|...+.+++|+|+   +.++++++.++.+.+|+...++.  +..+.+|...|++++|+|++    .+|++|+.||.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            67889999999997   89999999999998888877765  67778999999999999998    89999999999999


Q ss_pred             EeCCCCCceeecccc-------------------------------cCCccccccccccCCCCCeEEEEEcC
Q 006220          616 WDVTTSTKVLKTEEK-------------------------------SGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       616 Wd~~~~~~~~~~~~~-------------------------------~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      ||+..+.........                               ........+..+..+..+|.+++|++
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  316 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL  316 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence            999875432221110                               00112245666778888999999974

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-29  Score=275.38  Aligned_cols=243  Identities=14%  Similarity=0.073  Sum_probs=208.5

Q ss_pred             eeCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcC--CCCcccccccCCCCCCCCCCccccCCCCCceeeEEe--ecCcc
Q 006220          348 INTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMA--KLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--QGHSG  422 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~L-a~g~~dg~I~Iwdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~  422 (656)
                      .+|.+.|+|++|+|++++| |+|+.||.|+||++.  ..                            .....+  ..|..
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~----------------------------~~~~~~~~~~~~~  150 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK----------------------------NVLKLRKRFCFSK  150 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS----------------------------SCEEEEEEEECSS
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC----------------------------ceeeeeecccCCC
Confidence            4567889999999999996 899999999999987  31                            122223  36789


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE----EeeCCCccEEEEEEecC---CCEEEEEECCCcEEEEECCCC
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRI  495 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~----~~~~h~~~V~~l~~sp~---~~~l~sgs~Dg~i~lwd~~~~  495 (656)
                      .|++++|+|++++|++|+.+|.|++|++.++....    .+.+|...|++++|+|+   +.+|++|+.|++|++||++++
T Consensus       151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence            99999999999999999999999999998876554    67889999999999999   999999999999999999999


Q ss_pred             ceeEE-ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec-------------------------CCCC
Q 006220          496 QPLRI-MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-------------------------HRSM  549 (656)
Q Consensus       496 ~~~~~-~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~-------------------------h~~~  549 (656)
                      +.+.. +.+|...|.+++|+ ++++|++|+.|++|++||+++++++..+..                         ....
T Consensus       231 ~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (450)
T 2vdu_B          231 FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA  309 (450)
T ss_dssp             TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred             ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence            88877 55899999999999 999999999999999999999999888763                         2357


Q ss_pred             eEEEEEcCCCCEEEEEE-CCCcEEEEeC--CCC---eeeEeeeCCCccEEEEEEcCCCCEEEEEEC-------CCcEEEE
Q 006220          550 ILSLAMSPDGRYMASGD-EDGTIMMWDL--ASG---RCVTPLMGHTSCVWTLAYSCEGSLLASGSA-------DCTVKLW  616 (656)
Q Consensus       550 i~~l~~sp~g~~L~s~~-~dg~I~iwD~--~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~-------Dg~I~iW  616 (656)
                      |.+++|+|++++|++++ .|+.|++||+  ..+   ..+..+..| +.|.+++|+|++ ++++++.       +..|.+|
T Consensus       310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~  387 (450)
T 2vdu_B          310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI  387 (450)
T ss_dssp             EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence            99999999999999999 8999999999  666   777778888 889999999964 4555433       5568999


Q ss_pred             eCCCC
Q 006220          617 DVTTS  621 (656)
Q Consensus       617 d~~~~  621 (656)
                      .+...
T Consensus       388 ~~~~~  392 (450)
T 2vdu_B          388 EYNLN  392 (450)
T ss_dssp             EEETT
T ss_pred             EEEcC
Confidence            87654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=9.7e-29  Score=254.97  Aligned_cols=257  Identities=21%  Similarity=0.376  Sum_probs=213.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      +++++||+++ +||+|. |++|+|||+.+..                          ......+.+|...|++++|+|++
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~--------------------------~~~~~~~~~~~~~V~~v~~~~~~   79 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGD--------------------------ILQLLQMEQPGEYISSVAWIKEG   79 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCC--------------------------EEEEEECCSTTCCEEEEEECTTS
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCC--------------------------EEEEEEecCCCCeEEEEEECCCC
Confidence            5789999986 888874 9999999987521                          11223455788999999999999


Q ss_pred             CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecCCCCCeeEEE
Q 006220          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCVR  512 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~~~~~V~~v~  512 (656)
                      ++|++|+.||+|++|++.+++.+..+.+|...+.++.+  ++..+++|+.++.+++|+.... ..+..+.+|...+.++.
T Consensus        80 ~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (318)
T 4ggc_A           80 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR  157 (318)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             CEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE
Confidence            99999999999999999999999999999988876555  5679999999999999998765 45677889999999999


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCee----EEEEecCCCCeEEEEEcCCCCE---EEEEECCCcEEEEeCCCCeeeEee
Q 006220          513 WHINCNYIATGSSDKTVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRY---MASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       513 ~~p~~~~l~tgs~dg~V~iwd~~~~~~----~~~~~~h~~~i~~l~~sp~g~~---L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      ++++++++++++.||+|++||+++++.    ......|.+.|.++.++|++..   +++++.++.|++||..........
T Consensus       158 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~  237 (318)
T 4ggc_A          158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV  237 (318)
T ss_dssp             ECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred             EcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence            999999999999999999999987653    4556678889999999997653   345678899999999888776654


Q ss_pred             eCCCccEEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          586 MGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       586 ~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                       .+...+..+.|++++..+++++  .||.|+|||+.+++.+               ..+..|..+|.+|+|++
T Consensus       238 -~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~---------------~~l~gH~~~V~~l~~sp  294 (318)
T 4ggc_A          238 -DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV---------------AELKGHTSRVLSLTMSP  294 (318)
T ss_dssp             -ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE---------------EEECCCSSCEEEEEECT
T ss_pred             -cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE---------------EEEcCCCCCEEEEEEcC
Confidence             4667899999999999887765  7999999999886643               34456777788888764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.1e-30  Score=278.79  Aligned_cols=254  Identities=15%  Similarity=0.126  Sum_probs=199.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-------cCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSS-------GLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      -..+|.+++|||||+++|+++.|++|+  +...........       ..+..  .  .............. ...+|..
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg--~--~~~~~~~~~~~~~~-~~~~~~~   86 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLE--F--ENKLDFELAQQNGL-LNSQPVC   86 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCC--C--CCTTTTSCCCSSCS-STTSCSC
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCC--C--cceEEEEeCCCceE-eecCCCC
Confidence            346899999999999999999999999  643322110000       00000  0  00000011111111 1125688


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCc-----cEEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY-----PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-----~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~  497 (656)
                      .|++++|||+|..|++++.||+|++|+...  ++..+. |..     .|.+++|||+|++|++|+.||+|++||+.++..
T Consensus        87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l  163 (588)
T 2j04_A           87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE  163 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc
Confidence            999999999999999999999999999654  666666 665     499999999999999999999999999998752


Q ss_pred             -------eEEe----cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee---EEEE-ecCCCCeEEEEEcCCCCEE
Q 006220          498 -------LRIM----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC---VRIF-IGHRSMILSLAMSPDGRYM  562 (656)
Q Consensus       498 -------~~~~----~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~---~~~~-~~h~~~i~~l~~sp~g~~L  562 (656)
                             +..+    .+|.+.|.+++|+|+|  +++++.|++|++||+.++..   .+.+ .+|...|.+++|+  |+.|
T Consensus       164 ~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~L  239 (588)
T 2j04_A          164 NTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKV  239 (588)
T ss_dssp             TCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEE
T ss_pred             ccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEE
Confidence                   5666    6788899999999999  88999999999999988773   3566 4788899999999  6899


Q ss_pred             EEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEE--cCCCCEEEEEECCCcEEEEeCC
Q 006220          563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY--SCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       563 ~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~--s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      ++++ +|.|++||+..++......+|.+.|++++|  +|++..+++++.||+ ++|...
T Consensus       240 ASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          240 VLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             EEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            9987 699999999988774444489999999999  999999999999999 999986

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=2.2e-29  Score=268.85  Aligned_cols=243  Identities=24%  Similarity=0.414  Sum_probs=206.3

Q ss_pred             eeEEeecCccCEEEEEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEee-------------CCCccEEEEEEec-CCCE
Q 006220          413 SYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYK-------------GHNYPVWDVQFNP-QGHY  477 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-------------~h~~~V~~l~~sp-~~~~  477 (656)
                      ....+.+|.++|++++|+| ++++|++|+.||+|++||+.++.....+.             +|..+|.+++|+| ++.+
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            3456778999999999999 99999999999999999999877654443             5999999999999 7889


Q ss_pred             EEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCC---CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEE
Q 006220          478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA  554 (656)
Q Consensus       478 l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~---~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~  554 (656)
                      |++++.||.|++||+.+++....+. +...+.++.|+|.   +.++++|+.||.|++||+++++.+..+.+|...|++++
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~  193 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS  193 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred             EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence            9999999999999999998888876 6788999999984   45999999999999999999999999999999999999


Q ss_pred             EcCCCC-EEEEEECCCcEEEEeCCCCe-eeEee---------------eCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          555 MSPDGR-YMASGDEDGTIMMWDLASGR-CVTPL---------------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       555 ~sp~g~-~L~s~~~dg~I~iwD~~~~~-~~~~~---------------~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      |+|++. +|++|+.||.|++||++++. ++..+               .+|...|.+++|+|++++|++++.||.|++||
T Consensus       194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  273 (408)
T 4a11_B          194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN  273 (408)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence            999998 58999999999999998765 33433               57889999999999999999999999999999


Q ss_pred             CCCCCceeecccccC--------------------------------CccccccccccCCCCCeEEEEEcC
Q 006220          618 VTTSTKVLKTEEKSG--------------------------------TNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       618 ~~~~~~~~~~~~~~~--------------------------------~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      +.++...........                                ......+..+..+..+|.+++|++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  344 (408)
T 4a11_B          274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS  344 (408)
T ss_dssp             TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred             CCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence            998775433211000                                011234556677888999999974

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=7e-29  Score=260.82  Aligned_cols=229  Identities=23%  Similarity=0.374  Sum_probs=192.6

Q ss_pred             eeeEEeecCccCEEEEEEccC---CCEEEEEeCCCeEEEEeccC-Ccee-EEeeCCCccEEEEEEecCCCEEEEEECCCc
Q 006220          412 RSYTLYQGHSGPVYSASFSPL---GDFILSSSADTTIRLWSTKL-NANL-VCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (656)
Q Consensus       412 ~~~~~l~~h~~~V~~l~~spd---~~~L~s~s~Dg~I~lwd~~~-~~~~-~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~  486 (656)
                      .....+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+ +..+ ..+.+|..+|.+++|+|++.+|++|+.||.
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            455678899999999999999   59999999999999999997 4444 678889999999999999999999999999


Q ss_pred             EEEEECCCCceeEEecCCCCCeeEEEE--cCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-----------------
Q 006220          487 ARIWSMDRIQPLRIMAGHLSDVDCVRW--HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----------------  547 (656)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~~V~~v~~--~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-----------------  547 (656)
                      |++||+++++.+. +.+|...|.+++|  +|++++|++|+.||.|++||+++++++..+..+.                 
T Consensus       110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (368)
T 3mmy_A          110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATA  188 (368)
T ss_dssp             EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEG
T ss_pred             EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeC
Confidence            9999999988776 4569999999999  8999999999999999999999988777665443                 


Q ss_pred             ------------------------CCeEEEEEcCCCCE----EEEEECCCcEEEEeCCCC---eeeEeeeCCCc------
Q 006220          548 ------------------------SMILSLAMSPDGRY----MASGDEDGTIMMWDLASG---RCVTPLMGHTS------  590 (656)
Q Consensus       548 ------------------------~~i~~l~~sp~g~~----L~s~~~dg~I~iwD~~~~---~~~~~~~~h~~------  590 (656)
                                              ..+.++.+.+++..    +++++.||.|++||+...   ..+..+.+|..      
T Consensus       189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (368)
T 3mmy_A          189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS  268 (368)
T ss_dssp             GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred             CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence                                    23445555544433    999999999999999887   56777778876      


Q ss_pred             ------cEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          591 ------CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       591 ------~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                            .|++++|+|++++|++|+.||.|++||+.++....               .+..+..+|.+++|++
T Consensus       269 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~---------------~~~~~~~~v~~~~~s~  325 (368)
T 3mmy_A          269 APQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK---------------TSEQLDQPISACCFNH  325 (368)
T ss_dssp             CCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE---------------ECCCCSSCEEEEEECT
T ss_pred             ccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE---------------EecCCCCCceEEEECC
Confidence                  79999999999999999999999999998765443               3345556666666653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=5.9e-29  Score=264.25  Aligned_cols=199  Identities=17%  Similarity=0.217  Sum_probs=169.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220          351 HNGLNCASISQDGSLVAGGF--SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~--~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  428 (656)
                      ...+.+++|||||++||+++  .|++|+|||+.+.                            .....+ .|.+.|++++
T Consensus       133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~----------------------------~~~~~~-~~~~~V~~v~  183 (365)
T 4h5i_A          133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL----------------------------TEKFEI-ETRGEVKDLH  183 (365)
T ss_dssp             TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT----------------------------EEEEEE-ECSSCCCEEE
T ss_pred             ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC----------------------------cEEEEe-CCCCceEEEE
Confidence            34589999999999987654  6899999998751                            222223 4788999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECCC----cEEEEECCCCce----e
Q 006220          429 FSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDR----TARIWSMDRIQP----L  498 (656)
Q Consensus       429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~Dg----~i~lwd~~~~~~----~  498 (656)
                      |+|+|+++++++.+ .+++|+..++..+..  ..+|...|.+++|+|++.++++++.|+    .+++|++.....    .
T Consensus       184 fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~  262 (365)
T 4h5i_A          184 FSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS  262 (365)
T ss_dssp             ECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE
T ss_pred             EccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee
Confidence            99999999999865 566777666766543  456889999999999999999999887    688899876543    3


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~  577 (656)
                      ..+.+|...|++++|+|+|++||+|+.|++|+|||+++++++..+ .+|..+|++++|||||++|++|+.|++|+|||+.
T Consensus       263 ~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          263 KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            456789999999999999999999999999999999999999876 6899999999999999999999999999999996


Q ss_pred             CC
Q 006220          578 SG  579 (656)
Q Consensus       578 ~~  579 (656)
                      ..
T Consensus       343 ~~  344 (365)
T 4h5i_A          343 LN  344 (365)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-28  Score=287.23  Aligned_cols=208  Identities=25%  Similarity=0.398  Sum_probs=187.9

Q ss_pred             EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEecc--CCceeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEE
Q 006220          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIW  490 (656)
Q Consensus       415 ~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lw  490 (656)
                      ..+.+|.++|++++|+|++++|++|+.||+|++||+.  ++..+..+.+|..+|++++|+|+  +++|++|+.||+|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            3567999999999999999999999999999999998  55667788999999999999988  9999999999999999


Q ss_pred             ECCCCc--eeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC--eeEEEEecCCCCeEEEEEcC-------
Q 006220          491 SMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSP-------  557 (656)
Q Consensus       491 d~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~--~~~~~~~~h~~~i~~l~~sp-------  557 (656)
                      |+.+++  .+..+.+|...|.+++|+|+  ++++++|+.||.|++||++++  .....+.+|...|.+++|+|       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            999886  77788899999999999999  999999999999999999887  34556778999999999999       


Q ss_pred             ------CCCEEEEEECCCcEEEEeCCCC----eeeEeeeCCCccEEEEEEcCC---CCEEEEEECCCcEEEEeCCCCC
Q 006220          558 ------DGRYMASGDEDGTIMMWDLASG----RCVTPLMGHTSCVWTLAYSCE---GSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       558 ------~g~~L~s~~~dg~I~iwD~~~~----~~~~~~~~h~~~V~~l~~s~~---~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                            ++.+|++|+.||.|++||++++    .+...+.+|.+.|++++|+|+   +.+|++|+.||.|++||+.++.
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence                  5899999999999999999877    566778899999999999999   8999999999999999998864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.6e-28  Score=252.20  Aligned_cols=264  Identities=16%  Similarity=0.128  Sum_probs=199.4

Q ss_pred             HhccceecCCCCCCc--eeEEEEeeCCCCeEEEEEcCCC-CEEEEEeCCCcE-EEEEcCCCCcccccccCCCCCCCCCCc
Q 006220          327 DLRNRVHLSSAALPS--VSFYTFINTHNGLNCASISQDG-SLVAGGFSDSSL-KVWDMAKLGQQAVSSGLQGENDTTPRE  402 (656)
Q Consensus       327 ~~~~~v~l~~~~~ps--~~~~~~~~~~~~V~~l~fs~dg-~~La~g~~dg~I-~Iwdl~~~~~~~~~~~~~~~~~~~~~~  402 (656)
                      .....+.||......  .+.|++..|..+|..+.|+||. +++.++-.+=.+ .|+.+.-                    
T Consensus        60 ~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~--------------------  119 (356)
T 2w18_A           60 ACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC--------------------  119 (356)
T ss_dssp             EESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--------------------
T ss_pred             eccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE--------------------
Confidence            345677888776542  6788999999999999999974 444444322222 2222221                    


Q ss_pred             cccCCC-CCceeeEEeecCccCEEEEEEccCCCEEEEEe--CCCeEEEEec-cCCceeEEeeCCCccEEEEEEec---CC
Q 006220          403 DIIGPN-GRKRSYTLYQGHSGPVYSASFSPLGDFILSSS--ADTTIRLWST-KLNANLVCYKGHNYPVWDVQFNP---QG  475 (656)
Q Consensus       403 ~~~~~~-~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s--~Dg~I~lwd~-~~~~~~~~~~~h~~~V~~l~~sp---~~  475 (656)
                         +++ ........-.+|...|.++   ++++.+.+++  .|+.|++|++ .+++.+..+.+|...+..++|++   ++
T Consensus       120 ---spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~  193 (356)
T 2w18_A          120 ---SSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQ  193 (356)
T ss_dssp             ---------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETST
T ss_pred             ---CCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCC
Confidence               011 0112222234566666655   5666666644  5999999999 45788888889999999999999   78


Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEecCCC---CCeeEEEEcCCCCEE------------EEEECCCcEEEEeCCCCeeE
Q 006220          476 HYFASSSHDRTARIWSMDRIQPLRIMAGHL---SDVDCVRWHINCNYI------------ATGSSDKTVRLWDVSSGECV  540 (656)
Q Consensus       476 ~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~---~~V~~v~~~p~~~~l------------~tgs~dg~V~iwd~~~~~~~  540 (656)
                      .+|++|+.|++|++||+.+++.++.+.+|.   ..+.+++|+|+|.++            ++|+.|++|++||..+++++
T Consensus       194 ~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l  273 (356)
T 2w18_A          194 EALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV  273 (356)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEE
T ss_pred             ceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE
Confidence            999999999999999999999999998654   357788999999886            56888999999999999988


Q ss_pred             EEE-----ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEE-EEEEcCCCCEEEEEECCCcEE
Q 006220          541 RIF-----IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW-TLAYSCEGSLLASGSADCTVK  614 (656)
Q Consensus       541 ~~~-----~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~-~l~~s~~~~~l~sgs~Dg~I~  614 (656)
                      ..+     .+|...+.+..++  +.++++|+.||+|+|||+.+++++.++.+|...+. +++|||+|++|++|+.|++|+
T Consensus       274 ~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIk  351 (356)
T 2w18_A          274 GVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIF  351 (356)
T ss_dssp             EEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEE
T ss_pred             EEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEE
Confidence            776     3676666555554  88999999999999999999999999999987655 589999999999999999999


Q ss_pred             EEeC
Q 006220          615 LWDV  618 (656)
Q Consensus       615 iWd~  618 (656)
                      |||+
T Consensus       352 lWd~  355 (356)
T 2w18_A          352 VYHY  355 (356)
T ss_dssp             EEEE
T ss_pred             EecC
Confidence            9996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=6.7e-27  Score=249.32  Aligned_cols=264  Identities=14%  Similarity=0.132  Sum_probs=215.9

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (656)
                      ...+++|+..... +. ....++..+.+++|+|++++| ++++.|+.|++||+.+                         
T Consensus        11 d~~v~v~d~~~~~-~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-------------------------   63 (391)
T 1l0q_A           11 SDNISVIDVTSNK-VT-ATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-------------------------   63 (391)
T ss_dssp             TTEEEEEETTTTE-EE-EEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-------------------------
T ss_pred             CCEEEEEECCCCe-EE-EEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCC-------------------------
Confidence            3467778754432 22 334455679999999999987 6677899999999864                         


Q ss_pred             CCCceeeEEeecCccCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEE-EEEECCC
Q 006220          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF-ASSSHDR  485 (656)
Q Consensus       408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~sgs~Dg  485 (656)
                         ......+..|. .|.+++|+|++++|+ +++.++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.++
T Consensus        64 ---~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~  138 (391)
T 1l0q_A           64 ---NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDK  138 (391)
T ss_dssp             ---TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTT
T ss_pred             ---CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCC
Confidence               12333333343 899999999999875 55567999999999998888777554 68999999999987 6777899


Q ss_pred             cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l-~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s  564 (656)
                      .|++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.++.|++||+++++.+..+. +...+.+++|+|+|++|++
T Consensus       139 ~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~  216 (391)
T 1l0q_A          139 TVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYV  216 (391)
T ss_dssp             EEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEE
Confidence            9999999999988888766 567999999999988 567788999999999999888776 4567899999999999998


Q ss_pred             EE---CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEE-EEEECCCcEEEEeCCCCCceeec
Q 006220          565 GD---EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL-ASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       565 ~~---~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      ++   .++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.....
T Consensus       217 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          217 TNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             EEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence            88   68999999999999998888765 47899999999877 67788999999999988766544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-28  Score=258.32  Aligned_cols=263  Identities=8%  Similarity=0.013  Sum_probs=202.1

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+....... .++.  ...|.++.|+|+   +++|+.|+.|++|+.......                  ....
T Consensus        57 Dg~v~iwd~~~~~~~-~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~------------------~~~~  112 (343)
T 3lrv_A           57 DGALHFTQLKDSKTI-TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI------------------LDSK  112 (343)
T ss_dssp             TTEEEEEEESSSSCE-EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE------------------EETT
T ss_pred             CCcEEEEECCCCcEE-EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE------------------eecC
Confidence            456778865443322 1222  356888899998   999999999999997641100                  0000


Q ss_pred             CCceeeEEeecCccCEEEEEEcc--CCCEEEEEeCCCeEEEEeccCCceeEEee-CCCccEEEEEEecCCCEEEEEECCC
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSP--LGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDR  485 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~sp--d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~Dg  485 (656)
                      ..........+|.++|.+++|+|  +++++++|+.||+|++||+.++....... .|...|.+++|+|++.+|++|+.||
T Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg  192 (343)
T 3lrv_A          113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG  192 (343)
T ss_dssp             TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred             CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence            11112233347889999999999  99999999999999999999998876664 3566899999999999999999999


Q ss_pred             cEEEEECCCCcee-EEecC-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec---CCCCeE--EEEEcCC
Q 006220          486 TARIWSMDRIQPL-RIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMIL--SLAMSPD  558 (656)
Q Consensus       486 ~i~lwd~~~~~~~-~~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~---h~~~i~--~l~~sp~  558 (656)
                      .|++||+++++.+ ..+.+ |...|.+++|+|++.+|++|+ ++.|++||+++++.+..+..   |...+.  +++|+|+
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred             EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence            9999999999888 78887 999999999999999999999 55999999999877654443   334444  6999999


Q ss_pred             CCEEEEEEC-CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcC---CCCEEEEEECCCcEEEEeCCC
Q 006220          559 GRYMASGDE-DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC---EGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       559 g~~L~s~~~-dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~---~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      |++|++++. |+.|++|++..+......    .++..++|++   +...+++++.||.+.++-...
T Consensus       272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          272 GKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             CCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence            999999998 999999999765443332    5678888988   888999999999999886433

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=6.2e-28  Score=258.91  Aligned_cols=223  Identities=17%  Similarity=0.145  Sum_probs=159.0

Q ss_pred             cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE-----EeeCCCccEEEEEEec--------CCCEEEEEECCC
Q 006220          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-----CYKGHNYPVWDVQFNP--------QGHYFASSSHDR  485 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~-----~~~~h~~~V~~l~~sp--------~~~~l~sgs~Dg  485 (656)
                      .|.+.+....+++++.+|++|+.|++|+|||..++....     .+.+|...|++++|+|        ++++|++||.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            455555556666777889999999999999999876543     3578999999999998        789999999999


Q ss_pred             cEEEEECCCCceeEEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEE---------------------
Q 006220          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIF---------------------  543 (656)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~---------------------  543 (656)
                      +|++||+.+..++..+.+|...|.+++|+|++ ++|++|+.||+|++||+++++.....                     
T Consensus       167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            99999999888888888899999999999987 48999999999999999987654322                     


Q ss_pred             ----ecCCCCeEEEEEc-CCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcC-------------------
Q 006220          544 ----IGHRSMILSLAMS-PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC-------------------  599 (656)
Q Consensus       544 ----~~h~~~i~~l~~s-p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~-------------------  599 (656)
                          .+|...+.++.|+ |+|+.|++++.|+.+++||+..++....+..|...+..+.+.|                   
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR  326 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred             eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence                3577788999987 7999999999999999999998887777766665555444333                   


Q ss_pred             -CCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          600 -EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       600 -~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                       ++.++++|+.||+|++||+.++....               .+..+..+|.+|+|++
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~---------------~~~~~~~~V~svafsp  369 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEKDSNS---------------IPIQLGMPIVDFCWHQ  369 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCTTCCE---------------EEEECSSCEEEEEECT
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEE---------------EecCCCCcEEEEEEcC
Confidence             33467788899999999998865432               2233455777777764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.3e-28  Score=262.45  Aligned_cols=223  Identities=9%  Similarity=0.044  Sum_probs=185.0

Q ss_pred             eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc-----C
Q 006220          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG-----P  423 (656)
Q Consensus       349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-----~  423 (656)
                      .+...|.+++|||||++||+++.||.|+||+...                              ....+. |..     .
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------------------------------~l~~l~-~~~~~~~~s  131 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------------------------------MLTNLD-SKGNLSSRT  131 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE------------------------------EEEECC-CSSCSTTTC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc------------------------------eeeecc-CCCcccccc
Confidence            3467899999999999999999999999999542                              223334 544     5


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCce-------eEEe----eCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------LVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~-------~~~~----~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~  492 (656)
                      |.+++|||||++|++|+.||+|++||+.++..       +..+    .+|...|.+++|+|+|  +++++.|++|++||+
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~  209 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTV  209 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECC
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEEC
Confidence            99999999999999999999999999998753       4665    5677899999999999  889999999999999


Q ss_pred             CCCce---eEEe-cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEE--cCCCCEEEEEE
Q 006220          493 DRIQP---LRIM-AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM--SPDGRYMASGD  566 (656)
Q Consensus       493 ~~~~~---~~~~-~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~--sp~g~~L~s~~  566 (656)
                      .....   .+.+ .+|...|.+++|+  +++||+++ +++|++||+.+++......+|.+.|..++|  +|++..|++++
T Consensus       210 ~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          210 SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred             CCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence            88773   3556 4788999999999  68999887 699999999988885555589999999999  99999999999


Q ss_pred             CCCcEEEEeCCC-----------------------CeeeEeeeCCCccEEEEEEcCCCCEEEEEEC
Q 006220          567 EDGTIMMWDLAS-----------------------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSA  609 (656)
Q Consensus       567 ~dg~I~iwD~~~-----------------------~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~  609 (656)
                      .||+ ++|....                       +..+..+. +...|++++|||||+.+|+++.
T Consensus       287 edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          287 KTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred             CCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence            9999 9998742                       11122222 2446999999999999998873

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=5.7e-27  Score=253.46  Aligned_cols=258  Identities=12%  Similarity=0.045  Sum_probs=214.9

Q ss_pred             EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      ..........+.+++|+|++.++++++.++.|++||+.+......                       .....+.+|.+.
T Consensus       115 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~-----------------------~~~~~~~~~~~~  171 (433)
T 3bws_A          115 FISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL-----------------------SPPEKYKKKLGF  171 (433)
T ss_dssp             EEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE-----------------------CCCHHHHTTCCE
T ss_pred             EEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee-----------------------cCcccccccCCc
Confidence            333445556678999999888888888899999999875321110                       001134578999


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEec
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~~~~~~~  502 (656)
                      |.+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|++.++++++ .|+.|++||+++++.+..+.
T Consensus       172 v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~  251 (433)
T 3bws_A          172 VETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD  251 (433)
T ss_dssp             EEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC
T ss_pred             eeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec
Confidence            99999999999999999999999999999999999989999999999999999886555 79999999999998888877


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEE--------CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEE-EEEECCCcEEE
Q 006220          503 GHLSDVDCVRWHINCNYIATGS--------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMM  573 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs--------~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L-~s~~~dg~I~i  573 (656)
                      .+ ..+.+++|+|+++++++++        .||.|++||+.+++.+..+ .|...+.+++|+|+|+.+ ++++.|+.|++
T Consensus       252 ~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v  329 (433)
T 3bws_A          252 KI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEV  329 (433)
T ss_dssp             CC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred             CC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence            55 5699999999999999988        4889999999999887765 455688999999999755 66689999999


Q ss_pred             EeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC---------------CCcEEEEeCCCCCceeec
Q 006220          574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA---------------DCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       574 wD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~---------------Dg~I~iWd~~~~~~~~~~  627 (656)
                      ||+.+++.+..+. +...+.+++|+|+++++++++.               ||.|++||+.+++.....
T Consensus       330 ~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          330 YDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             EETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred             EECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence            9999998887775 6678999999999999988886               579999999887765443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.7e-26  Score=249.61  Aligned_cols=259  Identities=12%  Similarity=0.116  Sum_probs=216.2

Q ss_pred             cceecCCCCCCceeEE----EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220          330 NRVHLSSAALPSVSFY----TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (656)
Q Consensus       330 ~~v~l~~~~~ps~~~~----~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (656)
                      ..+++|+.........    .+.+|.+.|++++|++++.++++++.|+.|++||+..                       
T Consensus       144 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-----------------------  200 (433)
T 3bws_A          144 EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT-----------------------  200 (433)
T ss_dssp             SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-----------------------
T ss_pred             CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-----------------------
Confidence            4577887654433321    2336777899999999999999999999999999864                       


Q ss_pred             CCCCCceeeEEeecCccCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE--
Q 006220          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--  482 (656)
Q Consensus       406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs--  482 (656)
                           ......+..|...+.+++|+|+++.++ +++.|+.|++||+.+++.+..+..+. .+.+++|+|++.++++++  
T Consensus       201 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~  274 (433)
T 3bws_A          201 -----LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYIAQFS  274 (433)
T ss_dssp             -----CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEEEEEE
T ss_pred             -----ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEEEECC
Confidence                 223445567889999999999999875 55589999999999988887777644 589999999999999988  


Q ss_pred             ------CCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEE
Q 006220          483 ------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM  555 (656)
Q Consensus       483 ------~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l-~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~  555 (656)
                            .||.|++||+.+++.+..+ .|...+.+++|+|+++++ ++++.++.|++||+.+++.+..+. +...+.+++|
T Consensus       275 ~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~  352 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL  352 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred             CCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence                  4889999999988877665 455689999999999765 566889999999999999888776 6778999999


Q ss_pred             cCCCCEEEEEEC---------------CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC-CCcEEEEeCC
Q 006220          556 SPDGRYMASGDE---------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA-DCTVKLWDVT  619 (656)
Q Consensus       556 sp~g~~L~s~~~---------------dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~-Dg~I~iWd~~  619 (656)
                      +|+|++|++++.               ||.|++||+.+++.+..+..+ ..+.+++|+|+|++|++++. |+.|++|++.
T Consensus       353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            999999988876               579999999999998888764 57899999999999998875 9999999986


Q ss_pred             C
Q 006220          620 T  620 (656)
Q Consensus       620 ~  620 (656)
                      .
T Consensus       432 ~  432 (433)
T 3bws_A          432 G  432 (433)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=2.6e-26  Score=242.75  Aligned_cols=234  Identities=17%  Similarity=0.172  Sum_probs=187.1

Q ss_pred             CCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          352 NGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      .++.++++++++++++ +|+.|+.|+|||+.+.                            .....+. |..+|.+++|+
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~----------------------------~~~~~~~-~~~~v~~v~~~  109 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK----------------------------QDVSRIK-VDAPVKDLFLS  109 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT----------------------------EEEEEEE-CSSCEEEEEEC
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC----------------------------cEEEEEE-CCCceEEEEEc
Confidence            3688999999988884 5777899999998751                            2223333 66799999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeccCC-ceeEEeeCCCccEEEEEEecCCCEEEE--EECCCcEEEEECCCCc-----------
Q 006220          431 PLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQGHYFAS--SSHDRTARIWSMDRIQ-----------  496 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s--gs~Dg~i~lwd~~~~~-----------  496 (656)
                      ++.  ++++ .|+.|++||+.++ +.+..+..   +...+++++  .++++  |+.||.|++||+.++.           
T Consensus       110 ~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~  181 (355)
T 3vu4_A          110 REF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ  181 (355)
T ss_dssp             SSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------
T ss_pred             CCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence            753  4444 4789999999987 66655554   455567777  56666  5799999999998765           


Q ss_pred             ----e-eEEecCCCCCeeEEEEcCCCCEEEEEECCCc-EEEEeCCCCeeEEEEe-c-CCCCeEEEEEcCCCCEEEEEECC
Q 006220          497 ----P-LRIMAGHLSDVDCVRWHINCNYIATGSSDKT-VRLWDVSSGECVRIFI-G-HRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       497 ----~-~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~-V~iwd~~~~~~~~~~~-~-h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                          + +..+.+|...|.+++|+|++++|++|+.||+ |++||+++++++..+. + |...|.+++|+|+|++|++++.|
T Consensus       182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d  261 (355)
T 3vu4_A          182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK  261 (355)
T ss_dssp             -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred             cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence                2 7888999999999999999999999999998 9999999999999998 5 99999999999999999999999


Q ss_pred             CcEEEEeCCCCeee--Eee--------------------e-CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          569 GTIMMWDLASGRCV--TPL--------------------M-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       569 g~I~iwD~~~~~~~--~~~--------------------~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      |.|++||+..+...  ..+                    . .+......++|+++++.|++++.||.+++|++..+.
T Consensus       262 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          262 WTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             CEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            99999999765311  111                    0 112234678999999999999999999999987644

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=6.8e-25  Score=233.78  Aligned_cols=231  Identities=13%  Similarity=0.112  Sum_probs=194.9

Q ss_pred             CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEE-EEEeCC
Q 006220          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSAD  442 (656)
Q Consensus       364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L-~s~s~D  442 (656)
                      .++++++.|+.|++||+..                            ......+.+|. .+.+++|+|+++++ ++++.|
T Consensus         3 ~l~vs~~~d~~v~v~d~~~----------------------------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d   53 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTS----------------------------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHS   53 (391)
T ss_dssp             EEEEEETTTTEEEEEETTT----------------------------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGG
T ss_pred             EEEEEcCCCCEEEEEECCC----------------------------CeEEEEeecCC-CcceEEECCCCCEEEEECCCC
Confidence            4678888999999999875                            23334455554 58999999999976 677799


Q ss_pred             CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEE-
Q 006220          443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-  520 (656)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l-  520 (656)
                      ++|++||+.+++.+..+..+. .+.+++|+|++.++++++ .++.|++||+.+++.+..+..+ ..+.+++|+|+++++ 
T Consensus        54 ~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~  131 (391)
T 1l0q_A           54 NDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY  131 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred             CeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence            999999999999888887665 899999999999886555 6799999999999888887755 578999999999988 


Q ss_pred             EEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEE-EEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcC
Q 006220          521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC  599 (656)
Q Consensus       521 ~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L-~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~  599 (656)
                      ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+|++| ++++.++.|++||+.+++.+..+. +...+.+++|+|
T Consensus       132 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~  209 (391)
T 1l0q_A          132 VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNP  209 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECT
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECC
Confidence            67778999999999999999888766 457999999999987 567788999999999998887775 456789999999


Q ss_pred             CCCEEEEEE---CCCcEEEEeCCCCCceeec
Q 006220          600 EGSLLASGS---ADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       600 ~~~~l~sgs---~Dg~I~iWd~~~~~~~~~~  627 (656)
                      ++++|++++   .++.|++||+.+++.....
T Consensus       210 ~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~  240 (391)
T 1l0q_A          210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (391)
T ss_dssp             TSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence            999999888   6899999999987655443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=2.8e-26  Score=235.56  Aligned_cols=224  Identities=13%  Similarity=0.109  Sum_probs=163.1

Q ss_pred             EEEEeeCC-CCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee
Q 006220          344 FYTFINTH-NGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ  418 (656)
Q Consensus       344 ~~~~~~~~-~~V~~l~fs~d----g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  418 (656)
                      +..+.+-+ +.|++++||||    ++++++++.+  ++||++.+.......  ..+.   .....+......++....+.
T Consensus       103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss--~~g~---d~~V~~~~~s~dG~~~~s~~  175 (356)
T 2w18_A          103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSS--GTLS---DQQVEVMTFAEDGGGKENQF  175 (356)
T ss_dssp             EEEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEE--SSST---TCEEEEEEECTTSCEEEEEE
T ss_pred             eeeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEec--ccCC---CCcEEEEEECCCCceeeeec
Confidence            33444433 46999999999    9999988743  677777542221110  0000   00011111111234556677


Q ss_pred             cCccCEEEEEEcc---CCCEEEEEeCCCeEEEEeccCCceeEEeeCCC---ccEEEEEEecCCCEE------------EE
Q 006220          419 GHSGPVYSASFSP---LGDFILSSSADTTIRLWSTKLNANLVCYKGHN---YPVWDVQFNPQGHYF------------AS  480 (656)
Q Consensus       419 ~h~~~V~~l~~sp---d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~---~~V~~l~~sp~~~~l------------~s  480 (656)
                      +|+..++.++|++   ++..|++|+.|++|+|||+.+++++..+.+|.   ..+.+++|+|+|.++            ++
T Consensus       176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS  255 (356)
T 2w18_A          176 LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL  255 (356)
T ss_dssp             ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----------
T ss_pred             cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence            8999999999999   77999999999999999999999999998754   357778999999886            56


Q ss_pred             EECCCcEEEEECCCCceeEEe-----cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeE-EEE
Q 006220          481 SSHDRTARIWSMDRIQPLRIM-----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL-SLA  554 (656)
Q Consensus       481 gs~Dg~i~lwd~~~~~~~~~~-----~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~-~l~  554 (656)
                      |+.|++|++||..+++.+..+     .+|...+.+..+  ++..+++|+.|++|+|||+.+++++.++.+|...+. +++
T Consensus       256 Gs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va  333 (356)
T 2w18_A          256 RSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK  333 (356)
T ss_dssp             --CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred             cCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence            788999999999999887765     366665544444  478999999999999999999999999999987655 689


Q ss_pred             EcCCCCEEEEEECCCcEEEEeC
Q 006220          555 MSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       555 ~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      |||||++|++|+.|++|+|||+
T Consensus       334 fSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          334 WSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ECSSSSEEEEECTTSCEEEEEE
T ss_pred             ECCCCCEEEEEECCCcEEEecC
Confidence            9999999999999999999995

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=2e-25  Score=241.21  Aligned_cols=276  Identities=17%  Similarity=0.110  Sum_probs=216.2

Q ss_pred             ceecCCC--CCCcee-EEEEeeCCCCeEEEEEcC--------------CCCEEEEEeCC------CcEEEEEcCCCCccc
Q 006220          331 RVHLSSA--ALPSVS-FYTFINTHNGLNCASISQ--------------DGSLVAGGFSD------SSLKVWDMAKLGQQA  387 (656)
Q Consensus       331 ~v~l~~~--~~ps~~-~~~~~~~~~~V~~l~fs~--------------dg~~La~g~~d------g~I~Iwdl~~~~~~~  387 (656)
                      .+++|+.  ...... -.++..|...+.++++++              .+..++.++.+      +.|++||+..     
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-----  168 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-----  168 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-----
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-----
Confidence            6788887  544322 245777777788887775              25666666554      7999999863     


Q ss_pred             ccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCC---eEEEEeccCCceeEEeeCCCc
Q 006220          388 VSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT---TIRLWSTKLNANLVCYKGHNY  464 (656)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg---~I~lwd~~~~~~~~~~~~h~~  464 (656)
                                              .....+.+|.+.|.+++|+|+|+.|++++.++   .|++||+.+++.. .+..|..
T Consensus       169 ------------------------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~  223 (415)
T 2hqs_A          169 ------------------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR  223 (415)
T ss_dssp             ------------------------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSS
T ss_pred             ------------------------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCC
Confidence                                    12345667899999999999999999999875   9999999988765 4667888


Q ss_pred             cEEEEEEecCCCEEE-EEECCCc--EEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCe
Q 006220          465 PVWDVQFNPQGHYFA-SSSHDRT--ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGE  538 (656)
Q Consensus       465 ~V~~l~~sp~~~~l~-sgs~Dg~--i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~V~iwd~~~~~  538 (656)
                      .+.+++|+|+|++|+ +++.++.  |++||+.+++. ..+..|...+.+++|+|+|++|++++. ++  .|++||+.+++
T Consensus       224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            999999999999888 6666654  99999988765 566778889999999999999998886 44  68888998877


Q ss_pred             eEEEEecCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCC---c
Q 006220          539 CVRIFIGHRSMILSLAMSPDGRYMASGDED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC---T  612 (656)
Q Consensus       539 ~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d---g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg---~  612 (656)
                      .. .+..+...+.+++|+|+|++|++++.+   +.|.+||+.+++.. .+..|. .+.+++|+|+|++|++++.++   .
T Consensus       303 ~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~  379 (415)
T 2hqs_A          303 PQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSV  379 (415)
T ss_dssp             CE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEE
T ss_pred             EE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccE
Confidence            53 455677789999999999999988764   58999999988764 455554 899999999999999998877   7


Q ss_pred             EEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          613 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       613 I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      |++||+....                +..++.+...|.+++|++
T Consensus       380 l~~~d~~g~~----------------~~~l~~~~~~v~~~~~~~  407 (415)
T 2hqs_A          380 LNLVSTDGRF----------------KARLPATDGQVKFPAWSP  407 (415)
T ss_dssp             EEEEETTSCC----------------EEECCCSSSEEEEEEECC
T ss_pred             EEEEECCCCc----------------EEEeeCCCCCCcCCcccc
Confidence            9999986432                223455666777777764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=8.2e-23  Score=220.70  Aligned_cols=236  Identities=14%  Similarity=0.086  Sum_probs=192.0

Q ss_pred             cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDS---SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (656)
Q Consensus       330 ~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg---~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (656)
                      ..+++|+....  +...+.+|...|.+++|||||++||+++.++   .|++||+.+.                       
T Consensus       159 ~~i~i~d~~g~--~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg-----------------------  213 (415)
T 2hqs_A          159 YELRVSDYDGY--NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-----------------------  213 (415)
T ss_dssp             EEEEEEETTSC--SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-----------------------
T ss_pred             ceEEEEcCCCC--CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-----------------------
Confidence            46677765432  3445677888999999999999999998875   8999998741                       


Q ss_pred             CCCCceeeEEeecCccCEEEEEEccCCCEEE-EEeCCCe--EEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC
Q 006220          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH  483 (656)
Q Consensus       407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~-s~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~  483 (656)
                            ....+..|.+.+.+++|+|+|+.|+ +++.++.  |++||+.++.. ..+..|...+.+++|+|+|++|++++.
T Consensus       214 ------~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~  286 (415)
T 2hqs_A          214 ------AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSD  286 (415)
T ss_dssp             ------CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred             ------cEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEEC
Confidence                  1234567888999999999999887 6666654  99999988765 567778889999999999999998886


Q ss_pred             -CC--cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeEEEEecCCCCeEEEEEcC
Q 006220          484 -DR--TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSP  557 (656)
Q Consensus       484 -Dg--~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp  557 (656)
                       ++  .|++||+.+++. ..+..+...+.+++|+|+|++|++++.+   +.|++||+.+++.. .+..+. .+.+++|+|
T Consensus       287 ~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp  363 (415)
T 2hqs_A          287 QAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP  363 (415)
T ss_dssp             TTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT
T ss_pred             CCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC
Confidence             44  677889887764 4455677789999999999999988764   58999999988874 455554 899999999


Q ss_pred             CCCEEEEEECCC---cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCC
Q 006220          558 DGRYMASGDEDG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG  601 (656)
Q Consensus       558 ~g~~L~s~~~dg---~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~  601 (656)
                      +|++|++++.++   .|++||+. +.....+..|.+.|.+++|+|..
T Consensus       364 dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          364 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred             CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence            999999988777   79999986 66778888999999999999964

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1.7e-22  Score=210.20  Aligned_cols=265  Identities=11%  Similarity=0.140  Sum_probs=190.3

Q ss_pred             ccceecCCCC-CCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220          329 RNRVHLSSAA-LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSD-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (656)
Q Consensus       329 ~~~v~l~~~~-~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~d-g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (656)
                      ...+++|+.. ...........+...+.+++|+|+|++|++++.+ +.|.+|++....                      
T Consensus        14 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~----------------------   71 (343)
T 1ri6_A           14 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD----------------------   71 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT----------------------
T ss_pred             CCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC----------------------
Confidence            3567777543 2233344456677889999999999999888876 999999987210                      


Q ss_pred             CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeC-CCeEEEEecc---CCceeEEeeCCCccEEEEEEecCCCEEEEEE
Q 006220          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTK---LNANLVCYKGHNYPVWDVQFNPQGHYFASSS  482 (656)
Q Consensus       407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~-Dg~I~lwd~~---~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs  482 (656)
                        +.......+..+. .+.+++|+|++++|++++. ++.|.+||+.   +......+..+ ..+.+++|+|+++++++++
T Consensus        72 --~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~  147 (343)
T 1ri6_A           72 --GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPA  147 (343)
T ss_dssp             --CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEE
T ss_pred             --CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEec
Confidence              1112223333333 7889999999998876654 8899999994   33344444433 4588999999999888887


Q ss_pred             -CCCcEEEEECCC-CceeE----Eec-CCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC--Cee--EEEEe----cC
Q 006220          483 -HDRTARIWSMDR-IQPLR----IMA-GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS--GEC--VRIFI----GH  546 (656)
Q Consensus       483 -~Dg~i~lwd~~~-~~~~~----~~~-~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~--~~~--~~~~~----~h  546 (656)
                       .++.|++||+.+ ++...    .+. .....+.+++|+|+++++++++ .++.|.+||+..  +..  ...+.    ++
T Consensus       148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~  227 (343)
T 1ri6_A          148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF  227 (343)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred             CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence             899999999987 54332    222 2345788999999999876655 789999999953  433  22222    11


Q ss_pred             --CCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCC----CCeeeEeeeCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeC
Q 006220          547 --RSMILSLAMSPDGRYMASGD-EDGTIMMWDLA----SGRCVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDV  618 (656)
Q Consensus       547 --~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~----~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~  618 (656)
                        ...+.+++|+|+|++|+++. .++.|.+||+.    ..+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|++
T Consensus       228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence              23567899999999887554 78999999998    2345555555544 88999999999888887 6899999966


Q ss_pred             CC
Q 006220          619 TT  620 (656)
Q Consensus       619 ~~  620 (656)
                      ..
T Consensus       307 d~  308 (343)
T 1ri6_A          307 VG  308 (343)
T ss_dssp             ET
T ss_pred             cC
Confidence            53

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=4.1e-22  Score=222.53  Aligned_cols=263  Identities=11%  Similarity=0.095  Sum_probs=206.1

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCCcccccccCCCCCCCCCCccccC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLGQQAVSSGLQGENDTTPREDIIG  406 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl--~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (656)
                      ...+.+|+...... ..++..+. .+.+++|||||++|++++.|+.|++||+  .+                        
T Consensus       158 d~~V~v~D~~t~~~-~~~i~~g~-~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t------------------------  211 (543)
T 1nir_A          158 AGQIALVDGDSKKI-VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKE------------------------  211 (543)
T ss_dssp             GTEEEEEETTTCCE-EEEEECST-TEEEEEECTTSCEEEEEETTSEEEEEETTSSS------------------------
T ss_pred             CCeEEEEECCCceE-EEEEecCc-ccceEEECCCCCEEEEECCCCeEEEEECcCCC------------------------
Confidence            45677776654433 23333233 3999999999999999999999999998  32                        


Q ss_pred             CCCCceeeEEeecCccCEEEEEEcc----CCCEEEEEeC-CCeEEEEeccCCceeEEeeCC-----------CccEEEEE
Q 006220          407 PNGRKRSYTLYQGHSGPVYSASFSP----LGDFILSSSA-DTTIRLWSTKLNANLVCYKGH-----------NYPVWDVQ  470 (656)
Q Consensus       407 ~~~~~~~~~~l~~h~~~V~~l~~sp----d~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h-----------~~~V~~l~  470 (656)
                          ......+. +...+.+++|+|    +|+++++++. +++|.+||..+++++..+..+           ...+..+.
T Consensus       212 ----~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~  286 (543)
T 1nir_A          212 ----PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII  286 (543)
T ss_dssp             ----CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred             ----CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE
Confidence                12233333 345679999999    9999998884 899999999999988877652           22688999


Q ss_pred             EecCCCE-EEEEECCCcEEEEECCCCceeE--EecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEec-
Q 006220          471 FNPQGHY-FASSSHDRTARIWSMDRIQPLR--IMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG-  545 (656)
Q Consensus       471 ~sp~~~~-l~sgs~Dg~i~lwd~~~~~~~~--~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~-  545 (656)
                      ++|++.. +++...+++|.+||+.+.+.+.  .+ .+...+..+.|+|+|+++++++ .+++|.+||..+++++..+.. 
T Consensus       287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g  365 (543)
T 1nir_A          287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG  365 (543)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence            9997665 5566688999999998766544  33 3556788999999999887665 588999999999999988874 


Q ss_pred             ---CCCCeEEEEEcCC-CCEEEEEE-CCCcEEEEeCCC-------CeeeEeeeCCCccEEEEEEcCCCCEEEEEE-----
Q 006220          546 ---HRSMILSLAMSPD-GRYMASGD-EDGTIMMWDLAS-------GRCVTPLMGHTSCVWTLAYSCEGSLLASGS-----  608 (656)
Q Consensus       546 ---h~~~i~~l~~sp~-g~~L~s~~-~dg~I~iwD~~~-------~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs-----  608 (656)
                         |.+....+ ++|+ |..++++. .|++|.+||+.+       ++++.++.+|.+.+..++++|+|++|++++     
T Consensus       366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~  444 (543)
T 1nir_A          366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD  444 (543)
T ss_dssp             SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSS
T ss_pred             CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCC
Confidence               55444443 5777 56666665 689999999998       899999999998889999999999999987     


Q ss_pred             --CCCcEEEEeCCCCCce
Q 006220          609 --ADCTVKLWDVTTSTKV  624 (656)
Q Consensus       609 --~Dg~I~iWd~~~~~~~  624 (656)
                        .+++|.|||+.+.+..
T Consensus       445 ~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          445 ARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             HHHHTCEEEEETTCTTSC
T ss_pred             cccCceEEEEECCCCCCC
Confidence              2779999999998765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=5.6e-23  Score=208.36  Aligned_cols=250  Identities=16%  Similarity=0.130  Sum_probs=192.0

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CCcccccccCCCCCCCCCCccccCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK-LGQQAVSSGLQGENDTTPREDIIGP  407 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~  407 (656)
                      ...+++|+.......  .+..+...|.+++|+|||++|++++ ++.|.+||+.. ...                      
T Consensus        21 ~~~i~~~d~~~~~~~--~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~----------------------   75 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMR--VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP----------------------   75 (297)
T ss_dssp             CEEEEEEETTTTEEE--EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC----------------------
T ss_pred             ceeEEEEeCCCCcee--eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc----------------------
Confidence            456777776544433  4566788999999999999999986 88999999874 221                      


Q ss_pred             CCCceeeEEeecC-ccCEEEEEEccCCCEEEEEe--CCCeEEEEec--cCCceeEEeeCCCccEEEEEEecCCCEEE-EE
Q 006220          408 NGRKRSYTLYQGH-SGPVYSASFSPLGDFILSSS--ADTTIRLWST--KLNANLVCYKGHNYPVWDVQFNPQGHYFA-SS  481 (656)
Q Consensus       408 ~~~~~~~~~l~~h-~~~V~~l~~spd~~~L~s~s--~Dg~I~lwd~--~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-sg  481 (656)
                            .....+| ...|.+++|+|++++|++++  .++.+.||.+  .++. ...+..+. .+.+++|+|++++++ ++
T Consensus        76 ------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~  147 (297)
T 2ojh_A           76 ------EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCG  147 (297)
T ss_dssp             ------EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEE
T ss_pred             ------eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEE
Confidence                  1112233 46788999999999999998  3345555554  4443 34444333 588999999999887 77


Q ss_pred             ECCCcEEEEECCC-CceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC-CCeeEEEEecCCCCeEEEEEcCC
Q 006220          482 SHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPD  558 (656)
Q Consensus       482 s~Dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~-~~~~~~~~~~h~~~i~~l~~sp~  558 (656)
                      +.++.+++|+++. ......+..+...+.+++|+|++++|++++ .++.+++|++. .+..+..+..|...+.+++|+|+
T Consensus       148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~d  227 (297)
T 2ojh_A          148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPS  227 (297)
T ss_dssp             EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTT
T ss_pred             CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCC
Confidence            8899999998642 234556667888999999999999888776 58999999986 56677778888888999999999


Q ss_pred             CCEEEEEECC-----------CcEEEEeCCCCee--eEeeeCCCccEEEEEEcCCCCEEEEEECCC
Q 006220          559 GRYMASGDED-----------GTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADC  611 (656)
Q Consensus       559 g~~L~s~~~d-----------g~I~iwD~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg  611 (656)
                      |++|++++.+           +.|.+||+.+++.  +..+.+|...+.+++|+|+++.|++++.+.
T Consensus       228 g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          228 GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            9999988765           5699999988765  444557888899999999999998887654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=1.6e-22  Score=234.42  Aligned_cols=261  Identities=14%  Similarity=0.124  Sum_probs=192.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCC-ceeeEEeecCccC
Q 006220          351 HNGLNCASISQDGSLVAGGFS-DS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGR-KRSYTLYQGHSGP  423 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~-dg-----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~  423 (656)
                      ...+.+++|||||++|++++. |+     .|++||+.+.............    .....+..... ....... .....
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~  110 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL----PGTETLSDEEKARRERQRI-AAMTG  110 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-------------------------CCEE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc----cccccccchhhhhhhhhhh-ccccC
Confidence            446899999999999999988 88     8999998764332211110000    00000000000 0000000 01134


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      |.+++|||||++|++++. ++|++||+.++.  ....+..|...+.+++|||+|++|++++ ++.|++||+.+++.....
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence            788999999999999887 899999999873  4455667888899999999999999987 469999999988776655


Q ss_pred             cCCCCC----------------eeEEEEcCCCCEEEEEECCC---------------------------------cEEEE
Q 006220          502 AGHLSD----------------VDCVRWHINCNYIATGSSDK---------------------------------TVRLW  532 (656)
Q Consensus       502 ~~~~~~----------------V~~v~~~p~~~~l~tgs~dg---------------------------------~V~iw  532 (656)
                      ..+...                +.+++|+|+|++|++++.|+                                 .|++|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            544332                47899999999999988765                                 89999


Q ss_pred             eCCC-CeeEEEEe--cCCCCeEEEEEcCCCCEEEEEEC-----CCcEEEEeCCCCeeeEeeeCCCc----cEEEEEEcCC
Q 006220          533 DVSS-GECVRIFI--GHRSMILSLAMSPDGRYMASGDE-----DGTIMMWDLASGRCVTPLMGHTS----CVWTLAYSCE  600 (656)
Q Consensus       533 d~~~-~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~-----dg~I~iwD~~~~~~~~~~~~h~~----~V~~l~~s~~  600 (656)
                      |+.+ ++......  .|...+.+++| |||++|++++.     ++.|.+||+.++++...+..+..    .+.+++|+||
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd  347 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD  347 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence            9998 87765543  36778999999 99999997764     56899999999988776665543    4568999999


Q ss_pred             CCEEEEEECCCcEEEEeCC
Q 006220          601 GSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       601 ~~~l~sgs~Dg~I~iWd~~  619 (656)
                      |+++++++.||.++||.+.
T Consensus       348 g~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             SCEEEEECTTSSCEEEEEC
T ss_pred             CeEEEEecCCCccEEEEEc
Confidence            9999999999988888776

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=4.9e-21  Score=200.30  Aligned_cols=248  Identities=8%  Similarity=0.013  Sum_probs=198.3

Q ss_pred             eCCCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc
Q 006220          349 NTHNGLNCASISQDGSLVAGGFS-------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (656)
Q Consensus       349 ~~~~~V~~l~fs~dg~~La~g~~-------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~  421 (656)
                      .....+..++|+|+++++++++.       ++.|.+||..+..                            ....+. ..
T Consensus        38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~----------------------------~~~~~~-~~   88 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE----------------------------VTQAIH-ND   88 (353)
T ss_dssp             EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC----------------------------EEEEEE-ES
T ss_pred             hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe----------------------------EEEEEe-cC
Confidence            34467899999999999888874       5679999986521                            111221 22


Q ss_pred             cCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCcc---------EEEEEEecCCCEEEEEE--CCCcEEE
Q 006220          422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYP---------VWDVQFNPQGHYFASSS--HDRTARI  489 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---------V~~l~~sp~~~~l~sgs--~Dg~i~l  489 (656)
                      ..+.+++|+|++++++ ++..++.|.+||..+++.+..+..+...         +.+++|+|+|+++++++  .++.|.+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence            3467899999999654 5556799999999999888777664322         78899999999887776  4789999


Q ss_pred             EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec----CCCCeEEEEEcCCCCEEEEE
Q 006220          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----HRSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~----h~~~i~~l~~sp~g~~L~s~  565 (656)
                      ||..+++.+..+..+...+.+++|+|+++++++++.++.|.+||..+++.+..+..    +...+..++|+|+|++++++
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT  248 (353)
T ss_dssp             EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred             EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence            99999998888876666789999999999999999999999999999998887764    55568889999999987776


Q ss_pred             EC-CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCCceeec
Q 006220          566 DE-DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       566 ~~-dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~~~~~~~~  627 (656)
                      +. ++.|.+||+.+++.+..+..+..  .+++|+|+++.++.++ .++.|.+||+.+++.....
T Consensus       249 ~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~  310 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF  310 (353)
T ss_dssp             ESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            65 49999999999998887765432  5799999999665555 6899999999887765443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=5.4e-22  Score=201.04  Aligned_cols=224  Identities=17%  Similarity=0.214  Sum_probs=177.5

Q ss_pred             EeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEE
Q 006220          369 GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLW  448 (656)
Q Consensus       369 g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lw  448 (656)
                      ++.++.|++||+...                             ....+..|.+.|.+++|+|++++|++++ ++.|++|
T Consensus        18 ~~~~~~i~~~d~~~~-----------------------------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~   67 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTR-----------------------------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRL   67 (297)
T ss_dssp             CCCCEEEEEEETTTT-----------------------------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred             CCcceeEEEEeCCCC-----------------------------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEE
Confidence            457889999998641                             2234556889999999999999999987 7899999


Q ss_pred             eccC-CceeEEeeCC-CccEEEEEEecCCCEEEEEE--CCCcEEEEE--CCCCceeEEecCCCCCeeEEEEcCCCCEEE-
Q 006220          449 STKL-NANLVCYKGH-NYPVWDVQFNPQGHYFASSS--HDRTARIWS--MDRIQPLRIMAGHLSDVDCVRWHINCNYIA-  521 (656)
Q Consensus       449 d~~~-~~~~~~~~~h-~~~V~~l~~sp~~~~l~sgs--~Dg~i~lwd--~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~-  521 (656)
                      |+.+ +........+ ...+.+++|+|++.++++++  .++...+|.  ..++. ...+..+ ..+.+++|+|++++|+ 
T Consensus        68 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~  145 (297)
T 2ojh_A           68 SLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTY  145 (297)
T ss_dssp             ESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEE
T ss_pred             eCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEE
Confidence            9998 7776666565 46789999999999999999  334555554  45444 4444444 3589999999999887 


Q ss_pred             EEECCCcEEEEeCC-CCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCC-CCeeeEeeeCCCccEEEEEEc
Q 006220          522 TGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYS  598 (656)
Q Consensus       522 tgs~dg~V~iwd~~-~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~-~~~~~~~~~~h~~~V~~l~~s  598 (656)
                      +++.++.+++|++. .+.....+..+...+.+++|+|+|++|+.++ .++.+.+|++. .+..+..+..|...+.+++|+
T Consensus       146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s  225 (297)
T 2ojh_A          146 CGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPS  225 (297)
T ss_dssp             EEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEEC
T ss_pred             EECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEEC
Confidence            77889999999863 2334456667888999999999999888766 58999999986 566777788888899999999


Q ss_pred             CCCCEEEEEECC-----------CcEEEEeCCCCCce
Q 006220          599 CEGSLLASGSAD-----------CTVKLWDVTTSTKV  624 (656)
Q Consensus       599 ~~~~~l~sgs~D-----------g~I~iWd~~~~~~~  624 (656)
                      |+|++|++++.+           +.|++||+.+++..
T Consensus       226 ~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  262 (297)
T 2ojh_A          226 PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE  262 (297)
T ss_dssp             TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred             CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence            999999988876           56999999887653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=2.4e-21  Score=201.27  Aligned_cols=264  Identities=11%  Similarity=0.062  Sum_probs=191.4

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (656)
                      ...+.+|+........ .+..+...+ +++|+|||+++++++. ++.|.+||+.....                      
T Consensus        19 ~~~v~~~d~~~~~~~~-~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~----------------------   74 (331)
T 3u4y_A           19 LRRISFFSTDTLEILN-QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP----------------------   74 (331)
T ss_dssp             GTEEEEEETTTCCEEE-EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC----------------------
T ss_pred             CCeEEEEeCcccceee-eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce----------------------
Confidence            3467777655443322 233334456 9999999997766655 88999999875211                      


Q ss_pred             CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCC---eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE-EC
Q 006220          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT---TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SH  483 (656)
Q Consensus       408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg---~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~  483 (656)
                           ....+..+..++.+++|+|++++++++..++   .|.+||+.+++.+..+..+. ...+++|+|+|++++++ ..
T Consensus        75 -----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~  148 (331)
T 3u4y_A           75 -----KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRS  148 (331)
T ss_dssp             -----EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEET
T ss_pred             -----eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecC
Confidence                 1334455666666699999999998655553   89999999998887776544 46899999999865554 56


Q ss_pred             CCc-EEEEECCCCcee----EEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCee---EEEEecCCCCeEEEE
Q 006220          484 DRT-ARIWSMDRIQPL----RIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGEC---VRIFIGHRSMILSLA  554 (656)
Q Consensus       484 Dg~-i~lwd~~~~~~~----~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~---~~~~~~h~~~i~~l~  554 (656)
                      ++. +.+|+++....+    .........+.+++|+|+|+++++++ .++.|++||+.+++.   +..+..+ ..+..++
T Consensus       149 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~  227 (331)
T 3u4y_A          149 SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIV  227 (331)
T ss_dssp             TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEE
T ss_pred             CCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEE
Confidence            688 999998764433    11123445689999999999776655 688999999999988   7777644 5678899


Q ss_pred             EcCCCCEEEEEE-CCCcEEEEeCCCCee--eEeeeCC----Ccc---EEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCCc
Q 006220          555 MSPDGRYMASGD-EDGTIMMWDLASGRC--VTPLMGH----TSC---VWTLAYSCEGSLLASGSA-DCTVKLWDVTTSTK  623 (656)
Q Consensus       555 ~sp~g~~L~s~~-~dg~I~iwD~~~~~~--~~~~~~h----~~~---V~~l~~s~~~~~l~sgs~-Dg~I~iWd~~~~~~  623 (656)
                      |+|+|++|++++ .++.|.+||+.+++.  +..+..+    ...   ...++|+|+|++|++++. ++.|.+||+.....
T Consensus       228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          228 VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            999999776654 578899999999877  4443322    222   245899999998866655 56999999987543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=2e-21  Score=211.03  Aligned_cols=254  Identities=17%  Similarity=0.147  Sum_probs=182.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ..++++++++++.++++|+.+| |+||+.........    ....    .....     .........|.+.|++++|+|
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~----~~~~----~~~~~-----~~~~~~~~~~~~~v~~l~~sp  102 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK----PGDD----PNKIV-----DKVQGLLVPMKFPIHHLALSC  102 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC----TTCC----TTCEE-----ECCCCEEECCSSCEEEEEECT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc----cccC----ccccc-----ccCccccccCCCcccEEEEcC
Confidence            3578999999999999999888 99998753110000    0000    00000     001112235678899999999


Q ss_pred             CCCEEE----EEeCCCeEEEEeccCC--------ce---eEEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 006220          432 LGDFIL----SSSADTTIRLWSTKLN--------AN---LVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI  495 (656)
Q Consensus       432 d~~~L~----s~s~Dg~I~lwd~~~~--------~~---~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~  495 (656)
                      ++++|+    +|+.|++|++||+.++        +.   +..+.+|...|.+++|+|+ +.+|++++.||+|++||++++
T Consensus       103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~  182 (434)
T 2oit_A          103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET  182 (434)
T ss_dssp             TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred             CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence            999999    7889999999998764        22   3455679999999999997 899999999999999999998


Q ss_pred             ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-------CCeEEEEEcCCCCEEEEE-EC
Q 006220          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-------SMILSLAMSPDGRYMASG-DE  567 (656)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-------~~i~~l~~sp~g~~L~s~-~~  567 (656)
                      ..+....+|...|.+++|+|+|++|++|+.||+|++||++ ++....+..|.       ..|.+++|++++.++++. +.
T Consensus       183 ~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~  261 (434)
T 2oit_A          183 VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA  261 (434)
T ss_dssp             EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred             cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence            7776777888999999999999999999999999999998 66666665442       379999999998887653 34


Q ss_pred             CC------cEEEEeCCCCe-----eeEeee-------CCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 006220          568 DG------TIMMWDLASGR-----CVTPLM-------GHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT  620 (656)
Q Consensus       568 dg------~I~iwD~~~~~-----~~~~~~-------~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~  620 (656)
                      ||      .+++|+++...     ....+.       +...+-..+.+-++.+++++++ ..+.|.|+....
T Consensus       262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~  333 (434)
T 2oit_A          262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS  333 (434)
T ss_dssp             TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred             CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence            43      38999997642     111111       1122223344446667666655 455577776543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=1.2e-21  Score=227.07  Aligned_cols=238  Identities=14%  Similarity=0.120  Sum_probs=188.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  432 (656)
                      .|.+++|||||++|++++. +.|.+||+.+...                          .....+..|...+.+++||||
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~--------------------------~~~~~l~~~~~~~~~~~~SPD  162 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK--------------------------AAVRQLTHGEGFATDAKLSPK  162 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCST--------------------------TSCCBCCCSSSCEEEEEECTT
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCc--------------------------ceEEEcccCCcccccccCCCC
Confidence            4889999999999999976 9999999875200                          012234567788999999999


Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeEEeeCCCcc----------------EEEEEEecCCCEEEEEECCC-----------
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYP----------------VWDVQFNPQGHYFASSSHDR-----------  485 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~----------------V~~l~~sp~~~~l~sgs~Dg-----------  485 (656)
                      |++|++++. +.|++||+.++........+...                +.+++|||+|++|++++.|+           
T Consensus       163 G~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~  241 (741)
T 2ecf_A          163 GGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV  241 (741)
T ss_dssp             SSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC
Confidence            999998874 68999999987665544444332                47899999999999998766           


Q ss_pred             ----------------------cEEEEECCC-CceeEEec--CCCCCeeEEEEcCCCCEEEEEEC-----CCcEEEEeCC
Q 006220          486 ----------------------TARIWSMDR-IQPLRIMA--GHLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVS  535 (656)
Q Consensus       486 ----------------------~i~lwd~~~-~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~-----dg~V~iwd~~  535 (656)
                                            .|++||+.+ ++......  .|...+..++| |+|++|++++.     +..|++||+.
T Consensus       242 ~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~  320 (741)
T 2ecf_A          242 YADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA  320 (741)
T ss_dssp             CSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred             CCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC
Confidence                                  789999988 77665543  37778999999 99999998764     5689999999


Q ss_pred             CCeeEEEEecCCC----CeEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeeeEeeeCCCccEEEE-EEcCCCCEEEEEE-
Q 006220          536 SGECVRIFIGHRS----MILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTL-AYSCEGSLLASGS-  608 (656)
Q Consensus       536 ~~~~~~~~~~h~~----~i~~l~~sp~g~~L~s~~~dg~I~iwD~~-~~~~~~~~~~h~~~V~~l-~~s~~~~~l~sgs-  608 (656)
                      ++++...+..+..    .+.+++|+|||+++++++.||.+.||.+. .+. ...+..|...|.++ .|+|+++.|+..+ 
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~  399 (741)
T 2ecf_A          321 SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAG  399 (741)
T ss_dssp             TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred             CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence            9998887776653    45689999999999999999988888765 445 77777888888887 5999998776544 


Q ss_pred             CCC--cEEEEeCCC
Q 006220          609 ADC--TVKLWDVTT  620 (656)
Q Consensus       609 ~Dg--~I~iWd~~~  620 (656)
                      .++  .++||++..
T Consensus       400 ~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          400 IESARESQIYAVPL  413 (741)
T ss_dssp             SSCTTCBEEEEEET
T ss_pred             CCCCceEEEEEEEc
Confidence            455  899999864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=6.8e-21  Score=212.61  Aligned_cols=277  Identities=13%  Similarity=0.078  Sum_probs=206.7

Q ss_pred             cceecCCC--CCCceeEEEEeeCCCCeEEEEEcC----CCCEEEEEeC-CCcEEEEEcCCCCcccccccCCCCCCCCCCc
Q 006220          330 NRVHLSSA--ALPSVSFYTFINTHNGLNCASISQ----DGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPRE  402 (656)
Q Consensus       330 ~~v~l~~~--~~ps~~~~~~~~~~~~V~~l~fs~----dg~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~  402 (656)
                      ..+.+|+.  ... .+..+ +.+...+.+++|||    ||++|++++. ++.|.|||..+..........          
T Consensus       200 ~~V~v~D~~~~t~-~~~~~-i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~----------  267 (543)
T 1nir_A          200 ARIDMIDLWAKEP-TKVAE-IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR----------  267 (543)
T ss_dssp             SEEEEEETTSSSC-EEEEE-EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC----------
T ss_pred             CeEEEEECcCCCC-cEEEE-EecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc----------
Confidence            56777766  322 22333 34566789999999    9999999874 899999998753322111000          


Q ss_pred             cccCCCCCceeeEEeecCc-cCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEE
Q 006220          403 DIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYF  478 (656)
Q Consensus       403 ~~~~~~~~~~~~~~l~~h~-~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l  478 (656)
                              .........|. ..+.++.++|++. ++++...+++|.+||..+...+.  .+. +...+.++.|+|+|++|
T Consensus       268 --------g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l  338 (543)
T 1nir_A          268 --------GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYF  338 (543)
T ss_dssp             --------EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEE
T ss_pred             --------CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEE
Confidence                    00000000133 3789999999876 56677889999999998776544  333 56678899999999987


Q ss_pred             EEEE-CCCcEEEEECCCCceeEEecC----CCCCeeEEEEcCC-CCEEEEEE-CCCcEEEEeCCC-------CeeEEEEe
Q 006220          479 ASSS-HDRTARIWSMDRIQPLRIMAG----HLSDVDCVRWHIN-CNYIATGS-SDKTVRLWDVSS-------GECVRIFI  544 (656)
Q Consensus       479 ~sgs-~Dg~i~lwd~~~~~~~~~~~~----~~~~V~~v~~~p~-~~~l~tgs-~dg~V~iwd~~~-------~~~~~~~~  544 (656)
                      ++++ .+++|.+||+.+++.+..+..    |.+....+ ++|+ +..++++. .|++|.+||+.+       +++++.+.
T Consensus       339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~  417 (543)
T 1nir_A          339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ  417 (543)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred             EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence            7665 589999999999998887764    54433333 4777 55566665 589999999998       89999999


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEE-------CCCcEEEEeCCCCeee-Eee--------eCCCccEEEEEEcCCCCEEEEEE
Q 006220          545 GHRSMILSLAMSPDGRYMASGD-------EDGTIMMWDLASGRCV-TPL--------MGHTSCVWTLAYSCEGSLLASGS  608 (656)
Q Consensus       545 ~h~~~i~~l~~sp~g~~L~s~~-------~dg~I~iwD~~~~~~~-~~~--------~~h~~~V~~l~~s~~~~~l~sgs  608 (656)
                      +|.+.+..++++|+|++|++++       .+++|.+||+.+++.. ..+        ..+...+..+.|+|+|+.++++.
T Consensus       418 ~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~  497 (543)
T 1nir_A          418 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV  497 (543)
T ss_dssp             CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred             cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence            9998889999999999999987       3779999999998877 443        35678899999999999988763


Q ss_pred             -----CCCcEEEEeCCCCCceeecc
Q 006220          609 -----ADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       609 -----~Dg~I~iWd~~~~~~~~~~~  628 (656)
                           .|+.|.|||..+++......
T Consensus       498 ~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          498 WNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             ECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             ecCCCCCCeEEEEECCCceEEEeec
Confidence                 37999999999988765544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=1.2e-20  Score=197.79  Aligned_cols=254  Identities=7%  Similarity=0.085  Sum_probs=180.7

Q ss_pred             CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (656)
Q Consensus       340 ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~--dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  417 (656)
                      ..........+...+..++|+|||++++++..  ++.|.+|++....                          ......+
T Consensus        28 g~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~--------------------------~~~~~~~   81 (347)
T 3hfq_A           28 KTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQT--------------------------AHKLNTV   81 (347)
T ss_dssp             TEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTE--------------------------EEEEEEE
T ss_pred             CeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCc--------------------------EEEeeee
Confidence            33334445566677889999999994444432  6899999985311                          1233334


Q ss_pred             ecCccCEEEEEEccCCCEEEEEe-CCCeEEEEeccCCce---eEEeeC---------CCccEEEEEEecCCCEEEEEECC
Q 006220          418 QGHSGPVYSASFSPLGDFILSSS-ADTTIRLWSTKLNAN---LVCYKG---------HNYPVWDVQFNPQGHYFASSSHD  484 (656)
Q Consensus       418 ~~h~~~V~~l~~spd~~~L~s~s-~Dg~I~lwd~~~~~~---~~~~~~---------h~~~V~~l~~sp~~~~l~sgs~D  484 (656)
                      ..+...+..++|+|++++|++++ .+++|.+|++.....   +..+..         +...+.+++|+|+|+.++++..+
T Consensus        82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~  161 (347)
T 3hfq_A           82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS  161 (347)
T ss_dssp             EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT
T ss_pred             ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC
Confidence            45677888999999999888887 789999999963222   222221         12248899999999966666678


Q ss_pred             CcEEEEECC-CCceeE--EecC-CCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCC--Cee--EEEEecCC------CC
Q 006220          485 RTARIWSMD-RIQPLR--IMAG-HLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS--GEC--VRIFIGHR------SM  549 (656)
Q Consensus       485 g~i~lwd~~-~~~~~~--~~~~-~~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~--~~~--~~~~~~h~------~~  549 (656)
                      +.|++|++. +++...  .+.. ....+..++|+|+|++++++ ..++.|++|++..  ++.  +..+....      ..
T Consensus       162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  241 (347)
T 3hfq_A          162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNG  241 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCE
T ss_pred             CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCc
Confidence            899999998 443322  2222 23367889999999977664 5678999999874  543  22333322      34


Q ss_pred             eEEEEEcCCCCEEE-EEECCCcEEEEeCCC---CeeeEeeeCCCccEEEEEEcCCCCEEEEEECC-CcEEEEeCC
Q 006220          550 ILSLAMSPDGRYMA-SGDEDGTIMMWDLAS---GRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-CTVKLWDVT  619 (656)
Q Consensus       550 i~~l~~sp~g~~L~-s~~~dg~I~iwD~~~---~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D-g~I~iWd~~  619 (656)
                      +..++|+|+|++|+ ++..++.|.+||+..   .+.+..+..+...+.+++|+|+|++|++++.+ +.|.+|++.
T Consensus       242 ~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          242 AAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            88899999999874 556689999999972   35566666666678999999999988888765 899999654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=8.3e-21  Score=196.84  Aligned_cols=262  Identities=12%  Similarity=0.090  Sum_probs=195.8

Q ss_pred             cceecCCCCCCceeEEEEeeCCC---CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220          330 NRVHLSSAALPSVSFYTFINTHN---GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (656)
Q Consensus       330 ~~v~l~~~~~ps~~~~~~~~~~~---~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (656)
                      ..+.+|+.......  .......   .+.+++|+|||++++ ++..++.|.+||+.+...                    
T Consensus        11 ~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--------------------   68 (337)
T 1pby_B           11 DKLVVIDTEKMAVD--KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--------------------   68 (337)
T ss_dssp             TEEEEEETTTTEEE--EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--------------------
T ss_pred             CeEEEEECCCCcEE--EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe--------------------
Confidence            35666655433222  2222333   588999999998765 555678999999875221                    


Q ss_pred             CCCCCceeeEEee-c----CccCEEEEEEccCCCEEEEEe------------CCCeEEEEeccCCceeEEeeCCCccEEE
Q 006220          406 GPNGRKRSYTLYQ-G----HSGPVYSASFSPLGDFILSSS------------ADTTIRLWSTKLNANLVCYKGHNYPVWD  468 (656)
Q Consensus       406 ~~~~~~~~~~~l~-~----h~~~V~~l~~spd~~~L~s~s------------~Dg~I~lwd~~~~~~~~~~~~h~~~V~~  468 (656)
                              ...+. +    |...+.+++|+|+++++++++            .++.|.+||+.+++.+..+.. ...+.+
T Consensus        69 --------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~  139 (337)
T 1pby_B           69 --------LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITM  139 (337)
T ss_dssp             --------EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCC
T ss_pred             --------EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcce
Confidence                    11111 1    223567899999999988886            579999999998887777664 446788


Q ss_pred             EEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCC---------------------
Q 006220          469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK---------------------  527 (656)
Q Consensus       469 l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---------------------  527 (656)
                      ++|+|+|++++++  ++.|++||+.+++.+..+..+.. ...+.|+|++.+++.++..+                     
T Consensus       140 ~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (337)
T 1pby_B          140 LAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA  216 (337)
T ss_dssp             EEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred             eEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccc
Confidence            9999999988888  68999999999988877764431 12337899988776554332                     


Q ss_pred             ---cEEEEeCCCCeeE-EEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCE
Q 006220          528 ---TVRLWDVSSGECV-RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL  603 (656)
Q Consensus       528 ---~V~iwd~~~~~~~-~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~  603 (656)
                         .|.+||+.+++.. ..+..+...+.+++|+|+|++++++  ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++
T Consensus       217 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~  293 (337)
T 1pby_B          217 YRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGST  293 (337)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCE
T ss_pred             cccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCE
Confidence               4689999998775 2344566678899999999999988  689999999999988877644 45789999999999


Q ss_pred             EEEEECCCcEEEEeCCCCCceeecc
Q 006220          604 LASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       604 l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      |++++.++.|.+||+.+++......
T Consensus       294 l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          294 VWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             EEEEcCCCcEEEEECcCCcEEEEEE
Confidence            9999999999999999987765543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=4.5e-21  Score=221.45  Aligned_cols=264  Identities=14%  Similarity=0.103  Sum_probs=192.4

Q ss_pred             cceecCCCCCCceeEEEEeeCCC---CeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCCcccccccCCCCCC
Q 006220          330 NRVHLSSAALPSVSFYTFINTHN---GLNCASISQDGSLVAGGFSD---------SSLKVWDMAKLGQQAVSSGLQGEND  397 (656)
Q Consensus       330 ~~v~l~~~~~ps~~~~~~~~~~~---~V~~l~fs~dg~~La~g~~d---------g~I~Iwdl~~~~~~~~~~~~~~~~~  397 (656)
                      ..+++|+....... ..+..+..   .|.+++|||||++||+++.+         +.|.+||+.+...            
T Consensus        37 g~i~~~d~~~g~~~-~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------  103 (723)
T 1xfd_A           37 GTVRLWNVETNTST-VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------------  103 (723)
T ss_dssp             SCEEEBCGGGCCCE-EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC------------
T ss_pred             CCEEEEECCCCcEE-EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce------------
Confidence            36788876554433 22333332   49999999999999999774         7788999875321            


Q ss_pred             CCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccE-----------
Q 006220          398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV-----------  466 (656)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V-----------  466 (656)
                                    .......+|...+.+++|||||+.|++++. +.|++||+.++........+...+           
T Consensus       104 --------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~  168 (723)
T 1xfd_A          104 --------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE  168 (723)
T ss_dssp             --------------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred             --------------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence                          111112245556889999999999999886 799999999887776655544333           


Q ss_pred             -------EEEEEecCCCEEEEEECCC----------------------------------cEEEEECCCCceeEEecCC-
Q 006220          467 -------WDVQFNPQGHYFASSSHDR----------------------------------TARIWSMDRIQPLRIMAGH-  504 (656)
Q Consensus       467 -------~~l~~sp~~~~l~sgs~Dg----------------------------------~i~lwd~~~~~~~~~~~~~-  504 (656)
                             .+++|||+|++|++++.|+                                  .|++||+.+++....+..+ 
T Consensus       169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~  248 (723)
T 1xfd_A          169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD  248 (723)
T ss_dssp             HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred             EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc
Confidence                   7899999999999988653                                  7999999988766666654 


Q ss_pred             -----CCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCCCCeeEEEEec-CCCCe----EEEEEcCCCCEEEE--EECC
Q 006220          505 -----LSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGECVRIFIG-HRSMI----LSLAMSPDGRYMAS--GDED  568 (656)
Q Consensus       505 -----~~~V~~v~~~p~~~~l~tgs~----dg~V~iwd~~~~~~~~~~~~-h~~~i----~~l~~sp~g~~L~s--~~~d  568 (656)
                           ...+.+++|+|+|+++++.+.    +..|++||+.++++...+.. +.+.+    ..++|||||+.|+.  +..+
T Consensus       249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  328 (723)
T 1xfd_A          249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ  328 (723)
T ss_dssp             CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred             cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence                 567899999999998877653    35799999999988776654 33444    37899999997765  4566


Q ss_pred             C------cEEEEe-CCCCe--eeEeeeCCCccEEE-EEEcCCCCEEEEEECC---CcEEEEeCCCC
Q 006220          569 G------TIMMWD-LASGR--CVTPLMGHTSCVWT-LAYSCEGSLLASGSAD---CTVKLWDVTTS  621 (656)
Q Consensus       569 g------~I~iwD-~~~~~--~~~~~~~h~~~V~~-l~~s~~~~~l~sgs~D---g~I~iWd~~~~  621 (656)
                      +      .|.+|| ...+.  +...+..+...+.. ++|+|+|+.|+..+.+   +.+++|++...
T Consensus       329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence            6      577788 34443  15555544444554 6999999999877665   78999998754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=1.3e-20  Score=196.56  Aligned_cols=237  Identities=13%  Similarity=0.086  Sum_probs=182.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc-cCEEEEEEccCCC
Q 006220          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGD  434 (656)
Q Consensus       356 ~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spd~~  434 (656)
                      .+++++++.++++++.++.|.+||+.+.                            .....+..+. ..+..++|+|+++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~----------------------------~~~~~~~~~~~~~~~~~~~s~dg~   55 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASD----------------------------TVYKSCVMPDKFGPGTAMMAPDNR   55 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTT----------------------------EEEEEEECSSCCSSCEEEECTTSS
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCC----------------------------cEEEEEecCCCCCCceeEECCCCC
Confidence            4567889999999999999999998752                            1222222222 2567899999998


Q ss_pred             EE-EEEeCCCeEEEEeccCCceeEEeeCCC------ccEEEEEEecCCCEEEEEECC------------CcEEEEECCCC
Q 006220          435 FI-LSSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSSHD------------RTARIWSMDRI  495 (656)
Q Consensus       435 ~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~l~~sp~~~~l~sgs~D------------g~i~lwd~~~~  495 (656)
                      .+ ++++.++.|.+||+.+++.+..+..+.      ..+.+++|+|+|+++++++.+            +.|.+||+.++
T Consensus        56 ~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  135 (349)
T 1jmx_B           56 TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  135 (349)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             EEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence            65 455678999999999888877665332      237889999999999999865            89999999874


Q ss_pred             c---eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-------------------------
Q 006220          496 Q---PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-------------------------  547 (656)
Q Consensus       496 ~---~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-------------------------  547 (656)
                      +   .+..+.. ...+.+++|+|+|+ +++++  +.|++||+.+++.+..+..+.                         
T Consensus       136 ~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (349)
T 1jmx_B          136 LEAKPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS  211 (349)
T ss_dssp             GGBCCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred             cccceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence            3   3444443 34689999999999 66654  349999999988877664331                         


Q ss_pred             -------------------------------------------CCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220          548 -------------------------------------------SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVT  583 (656)
Q Consensus       548 -------------------------------------------~~i~~l~~sp-~g~~L~s~~~dg~I~iwD~~~~~~~~  583 (656)
                                                                 ..+.+++|+| +|++++++  ++.|.+||+.+++.+.
T Consensus       212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~  289 (349)
T 1jmx_B          212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK  289 (349)
T ss_dssp             EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred             eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence                                                       1345677889 99999988  8899999999999887


Q ss_pred             eeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       584 ~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      .+... ..+.+++|+|++++|++++.++.|++||+.+++.+...
T Consensus       290 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          290 AANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             EEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             EEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeee
Confidence            77643 34679999999998888888999999999988766544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=2.8e-20  Score=193.37  Aligned_cols=228  Identities=13%  Similarity=0.194  Sum_probs=167.6

Q ss_pred             EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCC-C
Q 006220          365 LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD-T  443 (656)
Q Consensus       365 ~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~D-g  443 (656)
                      ++++++.++.|++|++...+.                         . .......|...+.+++|+|++++|++++.+ +
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~-------------------------~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~   60 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGA-------------------------L-TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF   60 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC-------------------------E-EEEEEEECSSCCCCEEECTTSSEEEEEETTTT
T ss_pred             EEEeCCCCCeEEEEEECCCCc-------------------------E-EEeeeEecCCCCceEEECCCCCEEEEeecCCC
Confidence            445557899999999863110                         1 112223577788999999999998888876 9


Q ss_pred             eEEEEecc--CCce--eEEeeCCCccEEEEEEecCCCEEEEEEC-CCcEEEEECC---CCceeEEecCCCCCeeEEEEcC
Q 006220          444 TIRLWSTK--LNAN--LVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMD---RIQPLRIMAGHLSDVDCVRWHI  515 (656)
Q Consensus       444 ~I~lwd~~--~~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~lwd~~---~~~~~~~~~~~~~~V~~v~~~p  515 (656)
                      .|.+|++.  ++..  +..+..+. .+.+++|+|+++++++++. ++.|.+||+.   ....+..+..+ ..+.+++|+|
T Consensus        61 ~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~  138 (343)
T 1ri6_A           61 RVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP  138 (343)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT
T ss_pred             eEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC
Confidence            99999998  4443  34444444 7889999999998877765 8899999994   33445555444 5689999999


Q ss_pred             CCCEEEEEE-CCCcEEEEeCCC-CeeEE----EEec-CCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCC--Cee--eE
Q 006220          516 NCNYIATGS-SDKTVRLWDVSS-GECVR----IFIG-HRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS--GRC--VT  583 (656)
Q Consensus       516 ~~~~l~tgs-~dg~V~iwd~~~-~~~~~----~~~~-h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~--~~~--~~  583 (656)
                      +++++++++ .++.|++||+.+ ++...    .+.. ....+.+++|+|+|++|++++ .++.|.+||+..  ++.  ..
T Consensus       139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~  218 (343)
T 1ri6_A          139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ  218 (343)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred             CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe
Confidence            999998887 899999999987 65432    2233 344788999999999776655 789999999953  432  22


Q ss_pred             eee----CC--CccEEEEEEcCCCCEEEEE-ECCCcEEEEeCCC
Q 006220          584 PLM----GH--TSCVWTLAYSCEGSLLASG-SADCTVKLWDVTT  620 (656)
Q Consensus       584 ~~~----~h--~~~V~~l~~s~~~~~l~sg-s~Dg~I~iWd~~~  620 (656)
                      ...    ++  ...+.+++|+|+|++|+++ ..++.|.+||+..
T Consensus       219 ~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          219 TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             eccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence            222    11  2357789999999887754 4789999999983

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=1.5e-21  Score=225.57  Aligned_cols=234  Identities=11%  Similarity=0.083  Sum_probs=181.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc---CEEEEEE
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG---PVYSASF  429 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~l~~  429 (656)
                      .+.+++|||||+++++ +.||.|++||+.+..                            ....+.+|..   .|.+++|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~----------------------------~~~~~~~~~~~~~~v~~~~~   68 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT----------------------------STVLIEGKKIESLRAIRYEI   68 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC----------------------------CEEEECTTTTTTTTCSEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCc----------------------------EEEEeccccccccccceEEE
Confidence            3678899999998876 689999999987521                            2233344543   4899999


Q ss_pred             ccCCCEEEEEeCC---------CeEEEEeccCCceeEEee---CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 006220          430 SPLGDFILSSSAD---------TTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (656)
Q Consensus       430 spd~~~L~s~s~D---------g~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~  497 (656)
                      ||||++|++++.+         +.|.+||+.+++. ..+.   +|...+..++|||+|+.|++++. +.|++||+.+++.
T Consensus        69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~  146 (723)
T 1xfd_A           69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA  146 (723)
T ss_dssp             CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC
T ss_pred             CCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce
Confidence            9999999998874         7889999998876 3333   34445889999999999999986 7999999999888


Q ss_pred             eEEecCCCCCe------------------eEEEEcCCCCEEEEEECCC--------------------------------
Q 006220          498 LRIMAGHLSDV------------------DCVRWHINCNYIATGSSDK--------------------------------  527 (656)
Q Consensus       498 ~~~~~~~~~~V------------------~~v~~~p~~~~l~tgs~dg--------------------------------  527 (656)
                      ......+...+                  .+++|+|+|++|++++.++                                
T Consensus       147 ~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  226 (723)
T 1xfd_A          147 IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP  226 (723)
T ss_dssp             EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred             EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence            77766544433                  7899999999999987553                                


Q ss_pred             --cEEEEeCCCCeeEEEEecC------CCCeEEEEEcCCCCEEEEEEC----CCcEEEEeCCCCeeeEeeeC-CCccE--
Q 006220          528 --TVRLWDVSSGECVRIFIGH------RSMILSLAMSPDGRYMASGDE----DGTIMMWDLASGRCVTPLMG-HTSCV--  592 (656)
Q Consensus       528 --~V~iwd~~~~~~~~~~~~h------~~~i~~l~~sp~g~~L~s~~~----dg~I~iwD~~~~~~~~~~~~-h~~~V--  592 (656)
                        .|++||+.+++....+..+      ...+.+++|||||++|++.+.    +..|++||+.++++...+.. +.+.+  
T Consensus       227 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~  306 (723)
T 1xfd_A          227 SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHR  306 (723)
T ss_dssp             EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred             eeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEec
Confidence              7999999998876666654      567899999999999877653    35799999999987766543 33333  


Q ss_pred             --EEEEEcCCCCEEEE--EECCC------cEEEEe
Q 006220          593 --WTLAYSCEGSLLAS--GSADC------TVKLWD  617 (656)
Q Consensus       593 --~~l~~s~~~~~l~s--gs~Dg------~I~iWd  617 (656)
                        .+++|+|||+.|+.  +..++      .|.+||
T Consensus       307 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          307 QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence              37899999997765  45677      577777

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=1.9e-19  Score=188.16  Aligned_cols=248  Identities=11%  Similarity=-0.009  Sum_probs=191.2

Q ss_pred             ceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCC
Q 006220          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAG-GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (656)
Q Consensus       331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~-g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (656)
                      .+.+|+.......  ........+.+++|+|+|+++++ +..++.|.+||..+....                       
T Consensus        70 ~v~~~d~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-----------------------  124 (353)
T 3vgz_A           70 VVYRLDPVTLEVT--QAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK-----------------------  124 (353)
T ss_dssp             EEEEECTTTCCEE--EEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE-----------------------
T ss_pred             cEEEEcCCCCeEE--EEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE-----------------------
Confidence            4566655433322  22233455889999999996555 455799999998753221                       


Q ss_pred             CceeeEEeecCc---------cCEEEEEEccCCCEEEEEe--CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEE
Q 006220          410 RKRSYTLYQGHS---------GPVYSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF  478 (656)
Q Consensus       410 ~~~~~~~l~~h~---------~~V~~l~~spd~~~L~s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l  478 (656)
                           ..+..+.         ..+.+++|+|+++++++++  .++.|.+||..+++.+..+..+...+.+++|+|+|.++
T Consensus       125 -----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  199 (353)
T 3vgz_A          125 -----GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL  199 (353)
T ss_dssp             -----EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred             -----EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence                 1111111         1368899999999877665  47899999999998888887666668899999999999


Q ss_pred             EEEECCCcEEEEECCCCceeEEecC----CCCCeeEEEEcCCCCEEEEEECC-CcEEEEeCCCCeeEEEEecCCCCeEEE
Q 006220          479 ASSSHDRTARIWSMDRIQPLRIMAG----HLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRIFIGHRSMILSL  553 (656)
Q Consensus       479 ~sgs~Dg~i~lwd~~~~~~~~~~~~----~~~~V~~v~~~p~~~~l~tgs~d-g~V~iwd~~~~~~~~~~~~h~~~i~~l  553 (656)
                      ++++.++.+.+||+.+++.+..+..    +...+.+++|+|+++++++++.+ +.|.+||..+++.+..+.....  ..+
T Consensus       200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~  277 (353)
T 3vgz_A          200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAV  277 (353)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCE
T ss_pred             EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceE
Confidence            9999999999999999988877663    45567889999999988777654 8999999999998888775432  569


Q ss_pred             EEcCCCCEEEEEE-CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCC
Q 006220          554 AMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC  611 (656)
Q Consensus       554 ~~sp~g~~L~s~~-~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg  611 (656)
                      +|+|+|+++++++ .++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|+.+..++
T Consensus       278 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          278 LFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred             EECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence            9999999766655 6899999999999988887654 4679999999999777766553

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=3.6e-20  Score=192.40  Aligned_cols=236  Identities=13%  Similarity=0.123  Sum_probs=177.9

Q ss_pred             EEEcCCCCE-EEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCE
Q 006220          357 ASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (656)
Q Consensus       357 l~fs~dg~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~  435 (656)
                      ..|.+++.+ +++++.++.|.+||+.+.                            ........+...+ +++|+|++++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~----------------------------~~~~~~~~~~~~~-~~~~s~dg~~   53 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTL----------------------------EILNQITLGYDFV-DTAITSDCSN   53 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTC----------------------------CEEEEEECCCCEE-EEEECSSSCE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCccc----------------------------ceeeeEEccCCcc-eEEEcCCCCE
Confidence            345666555 667778999999998752                            1222333445556 9999999997


Q ss_pred             EEEEeC-CCeEEEEeccCCce-eEEeeCCCccEEEEEEecCCCEEEEEECCC---cEEEEECCCCceeEEecCCCCCeeE
Q 006220          436 ILSSSA-DTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDR---TARIWSMDRIQPLRIMAGHLSDVDC  510 (656)
Q Consensus       436 L~s~s~-Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg---~i~lwd~~~~~~~~~~~~~~~~V~~  510 (656)
                      +++++. ++.|.+||+.++.. ...+..+..+..+++|+|+|++++++..++   .|.+||+.+++.+..+..+ ....+
T Consensus        54 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~  132 (331)
T 3u4y_A           54 VVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVG  132 (331)
T ss_dssp             EEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEE
T ss_pred             EEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccc
Confidence            766655 89999999999887 777777777776699999999999555553   8999999999888877654 45789


Q ss_pred             EEEcCCCCEEEEE-ECCCc-EEEEeCCCCeeE----EEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCee--
Q 006220          511 VRWHINCNYIATG-SSDKT-VRLWDVSSGECV----RIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC--  581 (656)
Q Consensus       511 v~~~p~~~~l~tg-s~dg~-V~iwd~~~~~~~----~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~~--  581 (656)
                      ++|+|+|++++++ ..++. |.+|++.....+    ............++|+|+|+++++++ .++.|.+||+.+++.  
T Consensus       133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~  212 (331)
T 3u4y_A          133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT  212 (331)
T ss_dssp             EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred             eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence            9999999866655 55588 999998764433    12223445689999999999766554 689999999999888  


Q ss_pred             -eEeeeCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCCc
Q 006220          582 -VTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTK  623 (656)
Q Consensus       582 -~~~~~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~~~~  623 (656)
                       +..+..+ ..+.+++|+|+|++++.++ .++.|.+||+.+++.
T Consensus       213 ~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          213 LLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             EEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             eeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence             7776644 5668899999999776554 578899999988765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=1.5e-20  Score=216.54  Aligned_cols=239  Identities=15%  Similarity=0.178  Sum_probs=185.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ..|.+++|||| +.++.+ .++.|++||+.+.                             ....+..+.+.+.+++|||
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~-----------------------------~~~~l~~~~~~~~~~~~Sp  130 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR-----------------------------KVTYLFDTNEETASLDFSP  130 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT-----------------------------EEEEEECCTTCCTTCEECT
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCC-----------------------------ceEEccCCcccccCCcCCC
Confidence            56999999999 666666 4599999998641                             2233445667788999999


Q ss_pred             CCCEEEEEeCCCeEEEEeccC-----CceeEEeeCCCcc--------------EEEEEEecCCCEEEEEE----------
Q 006220          432 LGDFILSSSADTTIRLWSTKL-----NANLVCYKGHNYP--------------VWDVQFNPQGHYFASSS----------  482 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~-----~~~~~~~~~h~~~--------------V~~l~~sp~~~~l~sgs----------  482 (656)
                      ||+.|+++ .++.|++|++.+     +........+...              +.+++|+|+|++|++++          
T Consensus       131 dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~  209 (706)
T 2z3z_A          131 VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP  209 (706)
T ss_dssp             TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE
T ss_pred             CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEE
Confidence            99999985 679999999998     7665544433332              48899999999999998          


Q ss_pred             -----------------------CCCcEEEEECCCCceeEEec--CCCCCeeEEEEcCCCCEEEEEECCC-----cEEEE
Q 006220          483 -----------------------HDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDK-----TVRLW  532 (656)
Q Consensus       483 -----------------------~Dg~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg-----~V~iw  532 (656)
                                             .+..|++||+.+++......  .|...+.+++|+|+|++|++++.++     .|++|
T Consensus       210 ~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~  289 (706)
T 2z3z_A          210 IVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAY  289 (706)
T ss_dssp             EEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred             eeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence                                   44689999999887655443  4667799999999999999988776     89999


Q ss_pred             eCCCCeeEEEEe-c-CCC---CeEEEEEcC--CCCEEEEEECCCcEEEEeCC-CCeeeEeeeCCCccEEE-EEEcCCCCE
Q 006220          533 DVSSGECVRIFI-G-HRS---MILSLAMSP--DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWT-LAYSCEGSL  603 (656)
Q Consensus       533 d~~~~~~~~~~~-~-h~~---~i~~l~~sp--~g~~L~s~~~dg~I~iwD~~-~~~~~~~~~~h~~~V~~-l~~s~~~~~  603 (656)
                      |+.+++....+. . +..   .+.+++|+|  +|+++++++.||.++||++. ++..+..+..|...+.+ ++|+|+|+.
T Consensus       290 d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~  369 (706)
T 2z3z_A          290 DAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTR  369 (706)
T ss_dssp             ETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSE
T ss_pred             ECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCE
Confidence            999994433332 2 222   246789999  99999999999999999886 67777888888878877 799999998


Q ss_pred             EEEEECC-C----cEEEEeCCCCC
Q 006220          604 LASGSAD-C----TVKLWDVTTST  622 (656)
Q Consensus       604 l~sgs~D-g----~I~iWd~~~~~  622 (656)
                      |+.++.+ +    .|..||+.++.
T Consensus       370 l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          370 LYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             EEEEESSSCTTCBEEEEEETTCCC
T ss_pred             EEEEecCCCCceEEEEEEEcCCCC
Confidence            7766554 3    56677776654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=1.2e-20  Score=227.27  Aligned_cols=246  Identities=13%  Similarity=0.055  Sum_probs=200.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc-
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS-  430 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s-  430 (656)
                      ..+.+.+|||||++||++ .++.|.+|++..... ..   ....              ..........|.+.|.+++|+ 
T Consensus       245 ~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l-~~---l~~~--------------~~~~~~~~~~~~~~v~~~~~S~  305 (1045)
T 1k32_A          245 TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI-EK---IEIG--------------DLESPEDRIISIPSKFAEDFSP  305 (1045)
T ss_dssp             CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE-EE---CCCC--------------CCCBCCSEEEECGGGGEEEEEE
T ss_pred             CCcceeeEcCCCCEEEEE-eCCEEEEecCCceEe-ee---eccC--------------cccccccccccccccceeeecC
Confidence            357788999999999988 589999999842111 00   0000              000011123467789999999 


Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCc-cEEEEEEecCCCEEEEEECCCcEE-EEECCCCceeEEecCCCCCe
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASSSHDRTAR-IWSMDRIQPLRIMAGHLSDV  508 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp~~~~l~sgs~Dg~i~-lwd~~~~~~~~~~~~~~~~V  508 (656)
                      |+|++|++++ ++.|.+|++.++... .+..|.. .+.+++|+ +|..+++++.++.+. +|++..++.... .+|...+
T Consensus       306 pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~  381 (1045)
T 1k32_A          306 LDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNV  381 (1045)
T ss_dssp             CGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSE
T ss_pred             CCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccce
Confidence            9999999888 789999999876544 4566776 89999999 999999999988888 999987765544 4788899


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC----------cEEEEeCCC
Q 006220          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG----------TIMMWDLAS  578 (656)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg----------~I~iwD~~~  578 (656)
                      .+++|+|+|++|++++.++.|++||+.+++......+|.+.+.+++|||||++|++++.++          .|++||+.+
T Consensus       382 ~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          382 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            9999999999999999999999999999999888888999999999999999999887654          899999998


Q ss_pred             CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      ++ +..+..|...+.+++|+|+|++|++++.++...+|+....
T Consensus       462 g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          462 RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence            87 6677788888999999999999999999999899987643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=4.3e-19  Score=187.10  Aligned_cols=244  Identities=12%  Similarity=0.153  Sum_probs=175.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSD----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~d----g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      +......++|+|||++|++++.+    +.|.+|++....                        +..........+.....
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~------------------------g~~~~~~~~~~~~~~p~  103 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK------------------------GTLHLLNTQKTMGADPC  103 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT------------------------TEEEEEEEEECSSSCEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC------------------------CcEEEeeEeccCCCCcE
Confidence            56678889999999999998875    799999987410                        11122233334555677


Q ss_pred             EEEEccCCCEEEEEe-CCCeEEEEeccCCceeEE------eeC--------CCccEEEEEEecCCCEEEEEE-CCCcEEE
Q 006220          426 SASFSPLGDFILSSS-ADTTIRLWSTKLNANLVC------YKG--------HNYPVWDVQFNPQGHYFASSS-HDRTARI  489 (656)
Q Consensus       426 ~l~~spd~~~L~s~s-~Dg~I~lwd~~~~~~~~~------~~~--------h~~~V~~l~~sp~~~~l~sgs-~Dg~i~l  489 (656)
                      .+++  ++++|++++ .+++|.+|++.....+..      ..+        +...+.+++|+|+|+++++++ .++.+.+
T Consensus       104 ~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v  181 (361)
T 3scy_A          104 YLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHK  181 (361)
T ss_dssp             EEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEE
Confidence            7888  788777666 688999999975433211      111        123458899999999776665 5889999


Q ss_pred             EECCCCce------e-------EEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeE--EEEe---cCCCCe
Q 006220          490 WSMDRIQP------L-------RIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECV--RIFI---GHRSMI  550 (656)
Q Consensus       490 wd~~~~~~------~-------~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~--~~~~---~h~~~i  550 (656)
                      |+++....      +       .....+...+..++|+|+|+++++++ .++.|.+||+.++...  ..+.   .+....
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~  261 (361)
T 3scy_A          182 FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS  261 (361)
T ss_dssp             EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred             EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc
Confidence            99875431      1       22234456688999999999888877 6899999999877552  2222   233457


Q ss_pred             EEEEEcCCCCEEEEEECC--CcEEEEeCC--CCe--eeEeeeCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 006220          551 LSLAMSPDGRYMASGDED--GTIMMWDLA--SGR--CVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT  620 (656)
Q Consensus       551 ~~l~~sp~g~~L~s~~~d--g~I~iwD~~--~~~--~~~~~~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~  620 (656)
                      ..++|+|+|++|+++..+  +.|.+|++.  +++  .+..+.. ...+.+++|+|+|++|++++ .++.|.+|++..
T Consensus       262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence            899999999998776654  899999995  444  4444444 45678999999999888887 678999976653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=7.3e-21  Score=214.39  Aligned_cols=230  Identities=12%  Similarity=0.019  Sum_probs=178.1

Q ss_pred             CeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc-cCEEEEEEc
Q 006220          353 GLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFS  430 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s  430 (656)
                      .|.+++|+|||+.||+++. ||.++||++.+.                             ....+..|. ..|.+++|+
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-----------------------------~~~~lt~~~~~~~~~~~~s   73 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-----------------------------ETVKLNREPINSVLDPHYG   73 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETT-----------------------------EEEECCSSCCSEECEECTT
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEcCC-----------------------------CcEeeecccccccccccCC
Confidence            5899999999999999877 999999997531                             223334444 689999999


Q ss_pred             cCCCEEEEEeC---CCeEEEEeccC--CceeEEeeCCCccEEEEEEecCCCE-EEEEECCCcEEEEECCCCceeEEecCC
Q 006220          431 PLGDFILSSSA---DTTIRLWSTKL--NANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGH  504 (656)
Q Consensus       431 pd~~~L~s~s~---Dg~I~lwd~~~--~~~~~~~~~h~~~V~~l~~sp~~~~-l~sgs~Dg~i~lwd~~~~~~~~~~~~~  504 (656)
                      || +.+++++.   +...++|.+..  ......+..+. .+...+|+|+|+. +++.+.++.+.+||+.+++.......+
T Consensus        74 pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~  151 (582)
T 3o4h_A           74 VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP  151 (582)
T ss_dssp             CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES
T ss_pred             CC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC
Confidence            99 77777765   45567766543  22222333222 3446688888753 333344455569999988766655443


Q ss_pred             CCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC--cEEEEeCCC
Q 006220          505 LSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--TIMMWDLAS  578 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~d----g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg--~I~iwD~~~  578 (656)
                      .   .+++|+|+|++|++++.+    +.|++||+.+++.. .+..|.+.+..++|||||++|+++..+|  .|++||+.+
T Consensus       152 ~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~  227 (582)
T 3o4h_A          152 G---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD  227 (582)
T ss_dssp             S---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred             C---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence            3   889999999999988877    78999999988765 5678888999999999999999888888  899999999


Q ss_pred             CeeeEeeeCCCccEEEEE--------EcCCCCEEEEEECCCcEEEEeC
Q 006220          579 GRCVTPLMGHTSCVWTLA--------YSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       579 ~~~~~~~~~h~~~V~~l~--------~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      ++.. .+.+|...+.+++        |+|||.++++++.||++++|++
T Consensus       228 ~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          228 GSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            8887 7777877777777        9999999999999999999999

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=2.9e-21  Score=209.75  Aligned_cols=199  Identities=14%  Similarity=0.169  Sum_probs=161.1

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCC----------ceeE-----EeeCCCccEEEEEEecCCCEEE----EEE
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLN----------ANLV-----CYKGHNYPVWDVQFNPQGHYFA----SSS  482 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~----------~~~~-----~~~~h~~~V~~l~~sp~~~~l~----sgs  482 (656)
                      ..+..+++++++.++++++.++ |++|+....          ..+.     ....+...|.+++|+|+|++|+    +|+
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            4578899999999999999887 999875421          0111     1123566799999999999999    788


Q ss_pred             CCCcEEEEECCCC--------ce---eEEecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCe
Q 006220          483 HDRTARIWSMDRI--------QP---LRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI  550 (656)
Q Consensus       483 ~Dg~i~lwd~~~~--------~~---~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i  550 (656)
                      .|++|++||+.+.        ++   +..+.+|...|.+++|+|+ +++|++++.||+|++||++++..+....+|...|
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v  195 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV  195 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence            8999999998654        22   4556679999999999997 8999999999999999999998877778899999


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC-------CccEEEEEEcCCCCEEEEE-ECCCc------EEEE
Q 006220          551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-------TSCVWTLAYSCEGSLLASG-SADCT------VKLW  616 (656)
Q Consensus       551 ~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h-------~~~V~~l~~s~~~~~l~sg-s~Dg~------I~iW  616 (656)
                      ++++|+|+|++|++|+.||.|++||++ ++....+..|       ...|.+++|++++.++++. +.||.      +++|
T Consensus       196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~  274 (434)
T 2oit_A          196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA  274 (434)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence            999999999999999999999999998 6655555433       3389999999988877553 34433      8999


Q ss_pred             eCCCCC
Q 006220          617 DVTTST  622 (656)
Q Consensus       617 d~~~~~  622 (656)
                      ++.+..
T Consensus       275 ~l~~~~  280 (434)
T 2oit_A          275 LLPKKE  280 (434)
T ss_dssp             ECCCTT
T ss_pred             EeccCC
Confidence            998653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=4.3e-20  Score=212.85  Aligned_cols=274  Identities=13%  Similarity=0.116  Sum_probs=197.8

Q ss_pred             cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-----CCcccccccCCCCCCCCCCccc
Q 006220          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK-----LGQQAVSSGLQGENDTTPREDI  404 (656)
Q Consensus       330 ~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~-----~~~~~~~~~~~~~~~~~~~~~~  404 (656)
                      ..+++|+.....  ...+..+...+.+++|||||++||++ .++.|++|++.+     ...........        ..+
T Consensus       101 ~~i~~~d~~~~~--~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~--------~~~  169 (706)
T 2z3z_A          101 GGLVGFDMLARK--VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT--------ETL  169 (706)
T ss_dssp             TEEEEEETTTTE--EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB--------TTE
T ss_pred             CEEEEEECCCCc--eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC--------CCe
Confidence            567777765443  33455567789999999999999996 789999999875     32211100000        000


Q ss_pred             cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe---------------------------------CCCeEEEEecc
Q 006220          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS---------------------------------ADTTIRLWSTK  451 (656)
Q Consensus       405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s---------------------------------~Dg~I~lwd~~  451 (656)
                      ..    +..  ....+.+.+.++.|||||++|++++                                 .++.|++||+.
T Consensus       170 ~~----g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~  243 (706)
T 2z3z_A          170 VY----GQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA  243 (706)
T ss_dssp             EE----SSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred             Ec----ccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence            00    000  1122334468899999999999887                                 44689999999


Q ss_pred             CCceeEEee--CCCccEEEEEEecCCCEEEEEECCC-----cEEEEECCCCceeEEec--CCCC---CeeEEEEcC--CC
Q 006220          452 LNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDRIQPLRIMA--GHLS---DVDCVRWHI--NC  517 (656)
Q Consensus       452 ~~~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg-----~i~lwd~~~~~~~~~~~--~~~~---~V~~v~~~p--~~  517 (656)
                      ++.......  .|...+.+++|+|+|+++++++.++     .|++||+.+++....+.  .+..   .+.+++|+|  +|
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg  323 (706)
T 2z3z_A          244 TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN  323 (706)
T ss_dssp             TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS
T ss_pred             CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC
Confidence            877544332  4667899999999999999988776     89999999884333332  2222   246789999  99


Q ss_pred             CEEEEEECCCcEEEEeCC-CCeeEEEEecCCCCeEE-EEEcCCCCEEEEEECC-C----cEEEEeCCCCeeeEeeeCCCc
Q 006220          518 NYIATGSSDKTVRLWDVS-SGECVRIFIGHRSMILS-LAMSPDGRYMASGDED-G----TIMMWDLASGRCVTPLMGHTS  590 (656)
Q Consensus       518 ~~l~tgs~dg~V~iwd~~-~~~~~~~~~~h~~~i~~-l~~sp~g~~L~s~~~d-g----~I~iwD~~~~~~~~~~~~h~~  590 (656)
                      +++++++.|+.+++|++. ++..+..+..|...+.+ ++|+|+|+.|+.++.+ +    .|..||+.++. ...+ .|..
T Consensus       324 ~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l-~~~~  401 (706)
T 2z3z_A          324 QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL-TPES  401 (706)
T ss_dssp             EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES-CCSS
T ss_pred             EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec-cCCC
Confidence            999999999999999886 67778888888888877 7999999988765544 3    67777877765 3334 3667


Q ss_pred             cEEEEEEcCCCCEEEEEECC----CcEEEEeCCCCC
Q 006220          591 CVWTLAYSCEGSLLASGSAD----CTVKLWDVTTST  622 (656)
Q Consensus       591 ~V~~l~~s~~~~~l~sgs~D----g~I~iWd~~~~~  622 (656)
                      .+.+++|+|+|++++.++.+    +.|++||+.+++
T Consensus       402 ~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          402 GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            79999999999988876544    569999998875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=5.6e-20  Score=221.46  Aligned_cols=243  Identities=12%  Similarity=0.142  Sum_probs=198.2

Q ss_pred             EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      ..+.+|...+.++.|+++ .+++++..+|.++||.+....                           .....+..|. .+
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g---------------------------~~~~~l~~~~-~~  247 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG---------------------------KDLRKHTSFT-DY  247 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS---------------------------CSCEECCCCC-SS
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC---------------------------CcceEecCCC-Cc
Confidence            345778889999999998 677778888999999876311                           1112233343 35


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC-----------CCccEEEEEEe-cCCCEEEEEECCCcEEEEEC
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-----------HNYPVWDVQFN-PQGHYFASSSHDRTARIWSM  492 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-----------h~~~V~~l~~s-p~~~~l~sgs~Dg~i~lwd~  492 (656)
                      .+++|+|+|+.|++++ ++.|++|++.. ..+..+.+           |...+.+++|+ |+|.++++++ ++.+++|++
T Consensus       248 ~~~~~SpDG~~la~~~-~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~  324 (1045)
T 1k32_A          248 YPRHLNTDGRRILFSK-GGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV  324 (1045)
T ss_dssp             CEEEEEESSSCEEEEE-TTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred             ceeeEcCCCCEEEEEe-CCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence            6779999999998874 88999999954 34445444           34468999999 9999999988 789999999


Q ss_pred             CCCceeEEecCCCC-CeeEEEEcCCCCEEEEEECCCcEE-EEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCc
Q 006220          493 DRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVR-LWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (656)
Q Consensus       493 ~~~~~~~~~~~~~~-~V~~v~~~p~~~~l~tgs~dg~V~-iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~  570 (656)
                      ..+.... +..|.. .+.+++|+ +|+.|++++.++.+. +||+.++..... .+|...+.+++|||||++|++++.++.
T Consensus       325 ~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~  401 (1045)
T 1k32_A          325 SGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFE  401 (1045)
T ss_dssp             TSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCe
Confidence            8776544 566777 89999999 999999999888898 999988766544 478889999999999999999999999


Q ss_pred             EEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCC----------cEEEEeCCCCC
Q 006220          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC----------TVKLWDVTTST  622 (656)
Q Consensus       571 I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg----------~I~iWd~~~~~  622 (656)
                      |++||+.+++......+|.+.+.+++|||||++|++++.++          .|++||+.+++
T Consensus       402 v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          402 IMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             EEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             EEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            99999999988877778999999999999999999887654          89999998865

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=1.4e-18  Score=179.92  Aligned_cols=230  Identities=10%  Similarity=0.113  Sum_probs=175.6

Q ss_pred             CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee-cCcc-CEEEEEEccCCCEE-EEEe
Q 006220          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSG-PVYSASFSPLGDFI-LSSS  440 (656)
Q Consensus       364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~-~V~~l~~spd~~~L-~s~s  440 (656)
                      ++|++++.++.|.+||+.+.                            .....+. ++.. .+.+++|+|+++.+ ++++
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~----------------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~   53 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM----------------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVN   53 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT----------------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEET
T ss_pred             cEEEEcCCCCeEEEEECCCC----------------------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeC
Confidence            47899999999999998642                            1222222 2222 47789999999865 5566


Q ss_pred             CCCeEEEEeccCCceeEEeeCC-----CccEEEEEEecCCCEEEEEE------------CCCcEEEEECCCCceeEEecC
Q 006220          441 ADTTIRLWSTKLNANLVCYKGH-----NYPVWDVQFNPQGHYFASSS------------HDRTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~l~sgs------------~Dg~i~lwd~~~~~~~~~~~~  503 (656)
                      .++.|.+||+.+++.+..+...     ...+.+++|+|+|+++++++            .++.|.+||+.+++.+..+..
T Consensus        54 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  133 (337)
T 1pby_B           54 KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence            6889999999998887666532     22577899999999998886            579999999999888877764


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC--------------
Q 006220          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--------------  569 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg--------------  569 (656)
                       ...+.+++|+|++++|+++  ++.|++||+.+++.+..+..+... ..+.|+|+|+.++.++..+              
T Consensus       134 -~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~  209 (337)
T 1pby_B          134 -PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDI  209 (337)
T ss_dssp             -CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTS
T ss_pred             -CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeecccccc
Confidence             4568889999999988888  689999999999988877654411 1237899998776554332              


Q ss_pred             ----------cEEEEeCCCCeee-EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          570 ----------TIMMWDLASGRCV-TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       570 ----------~I~iwD~~~~~~~-~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                                .|.+||+.+++.. ..+..+...+.+++|+|++++++++  ++.|.+||+.+++.....
T Consensus       210 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~  276 (337)
T 1pby_B          210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             CTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred             ccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee
Confidence                      4789999998764 2234566778899999999999888  799999999887655433

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=1.2e-18  Score=184.55  Aligned_cols=242  Identities=11%  Similarity=0.031  Sum_probs=172.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMA-KLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ..+..++|+|||++|++++.+ .|.+|++. ....                          ........+ +.+.+++|+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~--------------------------~~~~~~~~~-g~~~~~~~s   91 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI--------------------------VHEASHPIG-GHPRANDAD   91 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE--------------------------EEEEEEECC-SSGGGGCTT
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE--------------------------EEeeEeecC-CCCccEEEC
Confidence            468899999999999988877 99999986 2110                          001111111 224458999


Q ss_pred             cCCCE--EEEEe-------------CCCeEEEEeccC-CceeEEee----CCCccEEEEEEecCCCEEEEEEC-CCcEEE
Q 006220          431 PLGDF--ILSSS-------------ADTTIRLWSTKL-NANLVCYK----GHNYPVWDVQFNPQGHYFASSSH-DRTARI  489 (656)
Q Consensus       431 pd~~~--L~s~s-------------~Dg~I~lwd~~~-~~~~~~~~----~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~l  489 (656)
                      |+|++  +++++             .+|++.+|++.. +.....+.    .+...+.+++|+|+|+++++++. ++.|++
T Consensus        92 pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~  171 (365)
T 1jof_A           92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWT  171 (365)
T ss_dssp             SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEE
Confidence            99994  45553             689999999973 55433333    24567899999999998887764 689999


Q ss_pred             EECC-CCcee--EEec--CCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCC--CCeeEE---EEe-------cCCC---
Q 006220          490 WSMD-RIQPL--RIMA--GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVS--SGECVR---IFI-------GHRS---  548 (656)
Q Consensus       490 wd~~-~~~~~--~~~~--~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~--~~~~~~---~~~-------~h~~---  548 (656)
                      |+++ +++..  ..+.  .|...+..++|+|+|+++++++. ++.|.+|++.  +++...   .+.       +|..   
T Consensus       172 ~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~  251 (365)
T 1jof_A          172 HRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG  251 (365)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred             EEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccc
Confidence            9998 66543  2333  24567899999999999988775 6899999765  565432   222       1222   


Q ss_pred             ---CeEEEE-EcCCCCEEEEEECC-C-----cEEEEeCC-CCeeeE---eeeCCCccEEEEEEcC---CCCEEEEEECC-
Q 006220          549 ---MILSLA-MSPDGRYMASGDED-G-----TIMMWDLA-SGRCVT---PLMGHTSCVWTLAYSC---EGSLLASGSAD-  610 (656)
Q Consensus       549 ---~i~~l~-~sp~g~~L~s~~~d-g-----~I~iwD~~-~~~~~~---~~~~h~~~V~~l~~s~---~~~~l~sgs~D-  610 (656)
                         .+..++ |+|||++|++++.+ +     .|.+|++. +++...   ....+...+..++|+|   +|++|++++.+ 
T Consensus       252 ~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~  331 (365)
T 1jof_A          252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE  331 (365)
T ss_dssp             SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS
T ss_pred             cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC
Confidence               488999 99999998876543 2     89999996 565443   2333445567889999   89999998865 


Q ss_pred             CcEEEEeCCCC
Q 006220          611 CTVKLWDVTTS  621 (656)
Q Consensus       611 g~I~iWd~~~~  621 (656)
                      +.|.+|++...
T Consensus       332 ~~v~v~~~~~~  342 (365)
T 1jof_A          332 GWLEIYRWKDE  342 (365)
T ss_dssp             CEEEEEEEETT
T ss_pred             CeEEEEEEchh
Confidence            89999999765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=209.91  Aligned_cols=236  Identities=13%  Similarity=0.149  Sum_probs=173.7

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc---CEEEEEEccC
Q 006220          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG---PVYSASFSPL  432 (656)
Q Consensus       356 ~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~l~~spd  432 (656)
                      +++|+|||++++++ .|+.|++||+.+.                            .....+.+|..   .|.+++||||
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g----------------------------~~~~~~~~~~~~~~~~~~~~~SpD   70 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETG----------------------------QSYTILSNRTMKSVNASNYGLSPD   70 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSC----------------------------CEEEEECHHHHHTTTCSEEEECTT
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCC----------------------------cEEEEEccccccccceeeEEECCC
Confidence            67899999766655 7999999998752                            12223333433   4889999999


Q ss_pred             CCEEEEEeC---------CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-
Q 006220          433 GDFILSSSA---------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-  502 (656)
Q Consensus       433 ~~~L~s~s~---------Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-  502 (656)
                      |++|++++.         +++|++||+.+++.+.... ....+.+++|||+|+.|++++ ++.|++|++.+++..+... 
T Consensus        71 g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~  148 (719)
T 1z68_A           71 RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN  148 (719)
T ss_dssp             SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC
T ss_pred             CCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC
Confidence            999998876         7899999999886621011 124688999999999999986 7899999998877655432 


Q ss_pred             CCCCC-----------------eeEEEEcCCCCEEEEEECCC----------------------------------cEEE
Q 006220          503 GHLSD-----------------VDCVRWHINCNYIATGSSDK----------------------------------TVRL  531 (656)
Q Consensus       503 ~~~~~-----------------V~~v~~~p~~~~l~tgs~dg----------------------------------~V~i  531 (656)
                      ++...                 ..+++|+|+|++|++++.|.                                  .|++
T Consensus       149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~  228 (719)
T 1z68_A          149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI  228 (719)
T ss_dssp             CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence            22221                 25899999999999987652                                  7889


Q ss_pred             EeCCCCeeE---EE-----EecCCCCeEEEEEcCCCCEEEEEECCC----cEEEEe----CCCCeeeEee----eCCCcc
Q 006220          532 WDVSSGECV---RI-----FIGHRSMILSLAMSPDGRYMASGDEDG----TIMMWD----LASGRCVTPL----MGHTSC  591 (656)
Q Consensus       532 wd~~~~~~~---~~-----~~~h~~~i~~l~~sp~g~~L~s~~~dg----~I~iwD----~~~~~~~~~~----~~h~~~  591 (656)
                      ||+.+++..   ..     +.+|...+.+++||||++++++....+    .|.+||    +.++++...+    .+|.+.
T Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~  308 (719)
T 1z68_A          229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW  308 (719)
T ss_dssp             EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC
T ss_pred             EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce
Confidence            999988753   21     235778899999999988777754332    489999    8888776655    467766


Q ss_pred             EE-----EEEEcCCCCEEEE--EECCC--cEEEEeCCCCC
Q 006220          592 VW-----TLAYSCEGSLLAS--GSADC--TVKLWDVTTST  622 (656)
Q Consensus       592 V~-----~l~~s~~~~~l~s--gs~Dg--~I~iWd~~~~~  622 (656)
                      +.     ++.|+|||+.++.  +..+|  .|.+||+..+.
T Consensus       309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence            66     7899999996544  44555  57777776654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.81  E-value=1.3e-17  Score=174.58  Aligned_cols=202  Identities=16%  Similarity=0.161  Sum_probs=146.5

Q ss_pred             ecCccCEEEEEEccCCCEEEEEeC---CCeEEEEeccCCce--eEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEE
Q 006220          418 QGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWS  491 (656)
Q Consensus       418 ~~h~~~V~~l~~spd~~~L~s~s~---Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd  491 (656)
                      ..+...+..++|+|+|+ |++++.   ++.|.+|++.++..  +..+..+...+..++|+|+|+++++++ .++++.+|+
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            34556678899999999 555554   68999999987653  344445677788999999999998888 789999999


Q ss_pred             CCCC---ceeEEecC---------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCeeEE--EEecC-CCCeEEEEE
Q 006220          492 MDRI---QPLRIMAG---------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVR--IFIGH-RSMILSLAM  555 (656)
Q Consensus       492 ~~~~---~~~~~~~~---------~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~-~~~~~~--~~~~h-~~~i~~l~~  555 (656)
                      +...   ..+..+..         +...+.+++|+|+|+.++++..++.|++||+. ++....  .+..+ ...+..++|
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            9632   22333321         12348889999999966666678899999998 554332  22322 236788999


Q ss_pred             cCCCCEEEE-EECCCcEEEEeCCC--Cee--eEeeeCCC------ccEEEEEEcCCCCEE-EEEECCCcEEEEeCCC
Q 006220          556 SPDGRYMAS-GDEDGTIMMWDLAS--GRC--VTPLMGHT------SCVWTLAYSCEGSLL-ASGSADCTVKLWDVTT  620 (656)
Q Consensus       556 sp~g~~L~s-~~~dg~I~iwD~~~--~~~--~~~~~~h~------~~V~~l~~s~~~~~l-~sgs~Dg~I~iWd~~~  620 (656)
                      +|+|++|++ +..++.|.+|++..  ++.  +..+....      ..+..++|+|+|++| +++..++.|.+|++..
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            999997666 45688999999874  543  22333222      458899999999977 5566789999999974

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=2.1e-18  Score=194.24  Aligned_cols=246  Identities=10%  Similarity=0.021  Sum_probs=182.1

Q ss_pred             ceecCCCCCCceeEEEEeeCC-CCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCC--CCcccccccCCCCCCCCCCccc
Q 006220          331 RVHLSSAALPSVSFYTFINTH-NGLNCASISQDGSLVAGGFS---DSSLKVWDMAK--LGQQAVSSGLQGENDTTPREDI  404 (656)
Q Consensus       331 ~v~l~~~~~ps~~~~~~~~~~-~~V~~l~fs~dg~~La~g~~---dg~I~Iwdl~~--~~~~~~~~~~~~~~~~~~~~~~  404 (656)
                      .+.+|...  ......+..++ ..+.+++|||| ++++++..   +...+||.+..  .+.                   
T Consensus        45 ~~~lw~~~--~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~-------------------  102 (582)
T 3o4h_A           45 SVNAYLYD--GGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGE-------------------  102 (582)
T ss_dssp             EEEEEEEE--TTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTC-------------------
T ss_pred             ceeEEEEc--CCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCc-------------------
Confidence            45566532  22233445555 57999999999 77777765   45567776642  110                   


Q ss_pred             cCCCCCceeeEEeecCccCEEEEEEccCCC--EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE
Q 006220          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS  482 (656)
Q Consensus       405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~--~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs  482 (656)
                            ..   .+..+ ..+...+|+|+++  .+++++.+ .+.+||+.+++.......+.   ++++|+|+|+++++++
T Consensus       103 ------~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~  168 (582)
T 3o4h_A          103 ------EQ---RLEAV-KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLG  168 (582)
T ss_dssp             ------CE---ECTTS-CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEE
T ss_pred             ------cc---cccCC-CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEE
Confidence                  01   11111 1233568888886  34444444 45699999887655544333   8899999999999888


Q ss_pred             CC----CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCC--cEEEEeCCCCeeEEEEecCCCCeEEEE--
Q 006220          483 HD----RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--TVRLWDVSSGECVRIFIGHRSMILSLA--  554 (656)
Q Consensus       483 ~D----g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg--~V~iwd~~~~~~~~~~~~h~~~i~~l~--  554 (656)
                      .+    +.|++||+.+++.. .+..|...+..++|+|+|+.|+++..++  .|++||+.+++.. .+.+|...+..++  
T Consensus       169 ~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~  246 (582)
T 3o4h_A          169 FFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPT  246 (582)
T ss_dssp             EEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCS
T ss_pred             EcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhc
Confidence            77    78999999887755 5677888899999999999999888888  8999999999887 7777877777777  


Q ss_pred             ------EcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCc---EEEEeCCC
Q 006220          555 ------MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT---VKLWDVTT  620 (656)
Q Consensus       555 ------~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~---I~iWd~~~  620 (656)
                            |+|||.++++++.||.+++|++  |+...   .+.+.|.+++|+ +++++++++.+.+   |.+||...
T Consensus       247 ~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          247 AITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             cccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence                  9999999999999999999999  76654   344678999999 9999999887754   77777654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=7.5e-17  Score=169.83  Aligned_cols=198  Identities=13%  Similarity=0.182  Sum_probs=144.1

Q ss_pred             CccCEEEEEEccCCCEEEEEeCC----CeEEEEeccCC--ce--eEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEE
Q 006220          420 HSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKLN--AN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIW  490 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~D----g~I~lwd~~~~--~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lw  490 (656)
                      +...+..++|+|++++|++++.+    +.|.+|++...  ..  +.....+......+++  +++++++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            66777889999999999998886    79999998763  22  3333445556677777  788877776 68899999


Q ss_pred             ECCCCceeEE------ecC--------CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCe-------e------EEE
Q 006220          491 SMDRIQPLRI------MAG--------HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGE-------C------VRI  542 (656)
Q Consensus       491 d~~~~~~~~~------~~~--------~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~-------~------~~~  542 (656)
                      ++.....+..      ..+        +...+.+++|+|+|+++++++ .++.|++|++....       .      ...
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            9975432211      111        123357899999999777665 47899999887543       1      122


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCee--eEeee---CCCccEEEEEEcCCCCEEEEEECC--CcEE
Q 006220          543 FIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC--VTPLM---GHTSCVWTLAYSCEGSLLASGSAD--CTVK  614 (656)
Q Consensus       543 ~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~~--~~~~~---~h~~~V~~l~~s~~~~~l~sgs~D--g~I~  614 (656)
                      ...+...+..++|+|+|+++++++ .++.|.+||+.++..  +..+.   .+...+.+++|+|+|++|++++.+  +.|.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence            233445678999999999888877 689999999987754  23332   334557899999999988776654  8999


Q ss_pred             EEeCC
Q 006220          615 LWDVT  619 (656)
Q Consensus       615 iWd~~  619 (656)
                      +|++.
T Consensus       286 v~~~~  290 (361)
T 3scy_A          286 IFKVD  290 (361)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99996

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=4.8e-17  Score=169.64  Aligned_cols=239  Identities=14%  Similarity=0.134  Sum_probs=183.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCC------------------------cEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220          352 NGLNCASISQDGSLVAGGFSDS------------------------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg------------------------~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (656)
                      +.+.+++++++|++++++..++                        .|.+||..+                         
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------------------------   78 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-------------------------   78 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-------------------------
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-------------------------
Confidence            5699999999999999988774                        455555432                         


Q ss_pred             CCCceeeEEe-ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc-eeEEe---------eCCCccEEEEEEec-CC
Q 006220          408 NGRKRSYTLY-QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCY---------KGHNYPVWDVQFNP-QG  475 (656)
Q Consensus       408 ~~~~~~~~~l-~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~-~~~~~---------~~h~~~V~~l~~sp-~~  475 (656)
                         ....... .++-....+++++|+|+++++.+.++.|++|+..... .+..+         .++.....+++++| ++
T Consensus        79 ---g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g  155 (329)
T 3fvz_A           79 ---AEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG  155 (329)
T ss_dssp             ---CCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC
T ss_pred             ---CeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC
Confidence               1112222 2344678999999999988888889999999986442 44544         23444688999999 78


Q ss_pred             CEEEEEE-CCCcEEEEECCCCceeEEecC----------CCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEE
Q 006220          476 HYFASSS-HDRTARIWSMDRIQPLRIMAG----------HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIF  543 (656)
Q Consensus       476 ~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~----------~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~  543 (656)
                      .++++.+ .++.|++|+ .++..+..+..          +......++++|+ ++++++...++.|++||..+|+.+..+
T Consensus       156 ~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~  234 (329)
T 3fvz_A          156 AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI  234 (329)
T ss_dssp             CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence            8888886 699999999 45566666642          2334889999998 777777778899999999989998887


Q ss_pred             e--cCCCCeEEEEEcCCCCEEEEE-------ECCCcEEEEeCCCCeeeEeee---CCCccEEEEEEcCCCCEEEEEECCC
Q 006220          544 I--GHRSMILSLAMSPDGRYMASG-------DEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADC  611 (656)
Q Consensus       544 ~--~h~~~i~~l~~sp~g~~L~s~-------~~dg~I~iwD~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~sgs~Dg  611 (656)
                      .  .+...+..++|+| |..+++.       ..++.|.+||..+++.+..+.   ++...+.+++++|+|.++++...++
T Consensus       235 ~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~  313 (329)
T 3fvz_A          235 KHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN  313 (329)
T ss_dssp             CCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC
T ss_pred             eccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC
Confidence            4  4556788999999 4444333       334589999999999988873   5667799999999998888888999


Q ss_pred             cEEEEeCCC
Q 006220          612 TVKLWDVTT  620 (656)
Q Consensus       612 ~I~iWd~~~  620 (656)
                      .|++|++..
T Consensus       314 ~I~~~~~~~  322 (329)
T 3fvz_A          314 TVWKFTLTE  322 (329)
T ss_dssp             CEEEEEEEE
T ss_pred             EEEEEeCCc
Confidence            999999854

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=1.3e-16  Score=162.24  Aligned_cols=242  Identities=10%  Similarity=0.186  Sum_probs=181.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE-c
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-S  430 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~-s  430 (656)
                      ....+++++++++++++...++.|.+|+.... .......                      .....+|...+.++++ .
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~----------------------~~~~~~~~~~p~~i~~~~   86 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGE----------------------CGKRDSQLLYPNRVAVVR   86 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECC----------------------BSSSTTCBSSEEEEEEET
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCCCc-EEEEecc----------------------cCCCcccccCceEEEEEc
Confidence            45899999999999998888999999997631 1000000                      0000134567889999 4


Q ss_pred             cCCCEEEEEeC-CCeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--CCCC
Q 006220          431 PLGDFILSSSA-DTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHLS  506 (656)
Q Consensus       431 pd~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~~~~  506 (656)
                      +++.++++... ++.|.+|+ .++..+..+.. +...+.+++++|+|+++++...++.|.+||.+ ++.+..+.  ++..
T Consensus        87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~  164 (286)
T 1q7f_A           87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLE  164 (286)
T ss_dssp             TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCS
T ss_pred             CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccC
Confidence            66766666543 78999999 45666665543 34568899999999988887788999999965 45555553  4556


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC--CCCeEEEEEcCCCCEEEEEECCC-cEEEEeCCCCeeeE
Q 006220          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDG-TIMMWDLASGRCVT  583 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g~~L~s~~~dg-~I~iwD~~~~~~~~  583 (656)
                      .+.+++++|+++.+++.+.++.|++||. +++.+..+..+  ...+..++++++|+++++...++ .|.+||. .++.+.
T Consensus       165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~  242 (286)
T 1q7f_A          165 FPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS  242 (286)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred             CcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEE
Confidence            7899999999998887778999999997 56666666543  35789999999999888887776 9999995 677777


Q ss_pred             eeeCCC--ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          584 PLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       584 ~~~~h~--~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      .+..+.  ..+.+++++|+|+++++ +.|++|++|++...
T Consensus       243 ~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          243 ALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            776543  34789999999987777 67999999998653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.78  E-value=5.4e-18  Score=196.64  Aligned_cols=239  Identities=13%  Similarity=0.141  Sum_probs=173.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc-----CEEEE
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG-----PVYSA  427 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-----~V~~l  427 (656)
                      ...++.|+|||++++++  ||.|++|++.+..                            ....+.+|..     ....+
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~   67 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGN----------------------------SSVFLENSTFDEFGHSINDY   67 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCC----------------------------EEEEECTTTTTTCCSCCCEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCc----------------------------eEEEEechhhhhhcccccce
Confidence            35688999999999987  9999999987632                            1222334432     23458


Q ss_pred             EEccCCCEEEEEeCC---------CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220          428 SFSPLGDFILSSSAD---------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       428 ~~spd~~~L~s~s~D---------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                      +|||||++|++++.+         +.+.+||+.+++.. .+..|...+...+|||+|+.||.++ ++.|++|++.++...
T Consensus        68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~  145 (740)
T 4a5s_A           68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY  145 (740)
T ss_dssp             EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred             EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE
Confidence            899999999998876         56679999988754 3566777899999999999999885 689999999887755


Q ss_pred             EEec-CCCC-----------------CeeEEEEcCCCCEEEEEECCC---------------------------------
Q 006220          499 RIMA-GHLS-----------------DVDCVRWHINCNYIATGSSDK---------------------------------  527 (656)
Q Consensus       499 ~~~~-~~~~-----------------~V~~v~~~p~~~~l~tgs~dg---------------------------------  527 (656)
                      +... ++..                 ....+.|+|+|++|+.++.|.                                 
T Consensus       146 ~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~  225 (740)
T 4a5s_A          146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVN  225 (740)
T ss_dssp             ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCC
T ss_pred             EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcC
Confidence            4322 2222                 223589999999999875332                                 


Q ss_pred             ---cEEEEeCCC---C---eeEEEEe-----cCCCCeEEEEEcCCCCEEEEEEC----CCcEEEEeCCCCe----eeE--
Q 006220          528 ---TVRLWDVSS---G---ECVRIFI-----GHRSMILSLAMSPDGRYMASGDE----DGTIMMWDLASGR----CVT--  583 (656)
Q Consensus       528 ---~V~iwd~~~---~---~~~~~~~-----~h~~~i~~l~~sp~g~~L~s~~~----dg~I~iwD~~~~~----~~~--  583 (656)
                         .|++||+.+   +   +......     +|...+..++|||||+.++....    +..|.+||+.+++    +..  
T Consensus       226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~  305 (740)
T 4a5s_A          226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR  305 (740)
T ss_dssp             CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG
T ss_pred             CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEE
Confidence               488899988   7   3333222     37778999999999997766543    3379999999887    322  


Q ss_pred             ee--eCCCccEE-----EEEEcCCCCEEE-EEEC-C--CcEEEEeCCCCCc
Q 006220          584 PL--MGHTSCVW-----TLAYSCEGSLLA-SGSA-D--CTVKLWDVTTSTK  623 (656)
Q Consensus       584 ~~--~~h~~~V~-----~l~~s~~~~~l~-sgs~-D--g~I~iWd~~~~~~  623 (656)
                      .+  .+|.+.|.     +.+|+|||+.|+ ..+. +  ..|++||+..+..
T Consensus       306 ~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          306 QHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             CEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             EeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence            22  34554443     788999999877 6653 3  3588888876554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.78  E-value=2.2e-17  Score=175.21  Aligned_cols=251  Identities=12%  Similarity=0.020  Sum_probs=174.2

Q ss_pred             eEEEEeeCCCCeEE-----EEEcCCCCEEEEEeC-CCc--EEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceee
Q 006220          343 SFYTFINTHNGLNC-----ASISQDGSLVAGGFS-DSS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY  414 (656)
Q Consensus       343 ~~~~~~~~~~~V~~-----l~fs~dg~~La~g~~-dg~--I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (656)
                      ....+..+......     .+|||||++||.++. +|.  |.+||+.+.                            ...
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g----------------------------~~~   73 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ----------------------------VAT   73 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC----------------------------EEE
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC----------------------------ceE
Confidence            33444555545555     789999999999887 674  666776541                            222


Q ss_pred             EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEE--EecCCCEEEEEE----------
Q 006220          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ--FNPQGHYFASSS----------  482 (656)
Q Consensus       415 ~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~--~sp~~~~l~sgs----------  482 (656)
                      ....+|...+.++.|+||++.|+.++.++.|++||+.+++....+..+...+....  ++|++.+++...          
T Consensus        74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~  153 (388)
T 3pe7_A           74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT  153 (388)
T ss_dssp             ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence            33344555555678999999999999999999999999988777776665554444  489999887532          


Q ss_pred             ------------CCCcEEEEECCCCceeEEecCCCCCeeEEEEcC-CCCEEEEEECC------CcEEEEeCCCCeeEEEE
Q 006220          483 ------------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSD------KTVRLWDVSSGECVRIF  543 (656)
Q Consensus       483 ------------~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~d------g~V~iwd~~~~~~~~~~  543 (656)
                                  .+..|++||+.+++..... .+...+..++|+| +|+.|+.++.+      ..|.++|..++... .+
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l  231 (388)
T 3pe7_A          154 DWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KV  231 (388)
T ss_dssp             SHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ES
T ss_pred             ccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Ee
Confidence                        4468999999988655444 4567789999999 99999887753      37888887765543 34


Q ss_pred             ecCC--CCeEEEEEcCCCCEEEEEEC-CC----cEEEEeCCCCee--eEeeeCCCcc---EEEEEEcCCCCEEEEE----
Q 006220          544 IGHR--SMILSLAMSPDGRYMASGDE-DG----TIMMWDLASGRC--VTPLMGHTSC---VWTLAYSCEGSLLASG----  607 (656)
Q Consensus       544 ~~h~--~~i~~l~~sp~g~~L~s~~~-dg----~I~iwD~~~~~~--~~~~~~h~~~---V~~l~~s~~~~~l~sg----  607 (656)
                      ..+.  ..+..++|||||+.|+..+. ++    .|++||+.+++.  +..+.++...   ...+.|+|||+.|+..    
T Consensus       232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  311 (388)
T 3pe7_A          232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD  311 (388)
T ss_dssp             CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred             eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence            4444  25788999999997765443 22    399999998874  3333331111   1123699999887754    


Q ss_pred             -----ECCCcEEEEeCCCCCc
Q 006220          608 -----SADCTVKLWDVTTSTK  623 (656)
Q Consensus       608 -----s~Dg~I~iWd~~~~~~  623 (656)
                           ..+..|++||+.++..
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          312 SGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             -----CCCCEEEEEETTTTEE
T ss_pred             cccccCCCCEEEEEeccCCce
Confidence                 4567899999988654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=1.5e-18  Score=200.35  Aligned_cols=258  Identities=12%  Similarity=0.117  Sum_probs=184.2

Q ss_pred             ccceecCCCCCCceeEEEEeeCCC----CeEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCCcccccccCCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHN----GLNCASISQDGSLVAGGFS---------DSSLKVWDMAKLGQQAVSSGLQGE  395 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~----~V~~l~fs~dg~~La~g~~---------dg~I~Iwdl~~~~~~~~~~~~~~~  395 (656)
                      ...+++|+.......  .+..++.    .+.+++|||||++||+++.         ++.|++||+.+......       
T Consensus        35 d~~i~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-------  105 (719)
T 1z68_A           35 DNNIVLYNIETGQSY--TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-------  105 (719)
T ss_dssp             TSCEEEEESSSCCEE--EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------
T ss_pred             CCCEEEEEcCCCcEE--EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-------
Confidence            346778876555433  2333322    4899999999999999876         78999999875221000       


Q ss_pred             CCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe-eCCCccE--------
Q 006220          396 NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPV--------  466 (656)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V--------  466 (656)
                                         ..+   ...+.+++|||||+.|++++ ++.|++|++.++...... .++...|        
T Consensus       106 -------------------~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v  162 (719)
T 1z68_A          106 -------------------NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWV  162 (719)
T ss_dssp             -------------------SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHH
T ss_pred             -------------------eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccce
Confidence                               001   14578899999999999886 689999999887765432 2332222        


Q ss_pred             ---------EEEEEecCCCEEEEEECCC----------------------------------cEEEEECCCCcee---EE
Q 006220          467 ---------WDVQFNPQGHYFASSSHDR----------------------------------TARIWSMDRIQPL---RI  500 (656)
Q Consensus       467 ---------~~l~~sp~~~~l~sgs~Dg----------------------------------~i~lwd~~~~~~~---~~  500 (656)
                               .+++|||||++|++++.|.                                  .|++||+.+++..   ..
T Consensus       163 ~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~  242 (719)
T 1z68_A          163 YEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV  242 (719)
T ss_dssp             HHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC
T ss_pred             eeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc
Confidence                     4899999999999988652                                  7889999887653   21


Q ss_pred             -----ecCCCCCeeEEEEcCCCCEEEEEECCC----cEEEEe----CCCCeeEEEE----ecCCCCeE-----EEEEcCC
Q 006220          501 -----MAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWD----VSSGECVRIF----IGHRSMIL-----SLAMSPD  558 (656)
Q Consensus       501 -----~~~~~~~V~~v~~~p~~~~l~tgs~dg----~V~iwd----~~~~~~~~~~----~~h~~~i~-----~l~~sp~  558 (656)
                           +.+|...+.+++|+|+++++++....+    .|.+||    +.++++...+    .+|...+.     .+.|+||
T Consensus       243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  322 (719)
T 1z68_A          243 PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD  322 (719)
T ss_dssp             CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred             cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence                 235778899999999987777754332    488999    8888776555    46777776     8899999


Q ss_pred             CCEEEE--EECCC--cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCC
Q 006220          559 GRYMAS--GDEDG--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTT  620 (656)
Q Consensus       559 g~~L~s--~~~dg--~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~  620 (656)
                      |+.|+.  +..+|  .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+     +.+++|.+..
T Consensus       323 g~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          323 AISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             SSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             CCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            996554  44555  57778887666 45566666678888777 88777776665     8899998864

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.76  E-value=1.4e-16  Score=165.77  Aligned_cols=223  Identities=11%  Similarity=0.031  Sum_probs=163.0

Q ss_pred             ccceecCCCCCCceeEEEEeeCCC--CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHN--GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~--~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (656)
                      ...+++|+....... .+ .....  .+.+++|+|||++++ ++..++.|.+||+.+..                     
T Consensus        20 ~~~v~~~d~~~~~~~-~~-~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~---------------------   76 (349)
T 1jmx_B           20 PNNLHVVDVASDTVY-KS-CVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK---------------------   76 (349)
T ss_dssp             TTEEEEEETTTTEEE-EE-EECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE---------------------
T ss_pred             CCeEEEEECCCCcEE-EE-EecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc---------------------
Confidence            345667765443322 12 22233  688999999998665 45568999999987521                     


Q ss_pred             CCCCCceeeEEee-cC-----ccCEEEEEEccCCCEEEEEeCC------------CeEEEEeccCCce---eEEeeCCCc
Q 006220          406 GPNGRKRSYTLYQ-GH-----SGPVYSASFSPLGDFILSSSAD------------TTIRLWSTKLNAN---LVCYKGHNY  464 (656)
Q Consensus       406 ~~~~~~~~~~~l~-~h-----~~~V~~l~~spd~~~L~s~s~D------------g~I~lwd~~~~~~---~~~~~~h~~  464 (656)
                             ....+. ++     ...+.+++|+|+|++|++++.+            +.|.+||+.+++.   +..+.. ..
T Consensus        77 -------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~  148 (349)
T 1jmx_B           77 -------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PR  148 (349)
T ss_dssp             -------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CS
T ss_pred             -------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CC
Confidence                   111111 11     2347789999999999988865            8999999987443   334443 34


Q ss_pred             cEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC---------------------------------------
Q 006220          465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL---------------------------------------  505 (656)
Q Consensus       465 ~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~---------------------------------------  505 (656)
                      .+.+++|+|+|+ +++++.  .|++||..+++.+..+..+.                                       
T Consensus       149 ~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  225 (349)
T 1jmx_B          149 QVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD  225 (349)
T ss_dssp             SCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred             cccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC
Confidence            688999999999 555543  49999998887776654321                                       


Q ss_pred             -----------------------------CCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEE
Q 006220          506 -----------------------------SDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM  555 (656)
Q Consensus       506 -----------------------------~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~  555 (656)
                                                   ..+.+++|+| ++++++++  ++.|.+||+.+++.+..+... ..+.+++|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~  302 (349)
T 1jmx_B          226 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAF  302 (349)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEE
T ss_pred             ccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEE
Confidence                                         1345677889 99999988  889999999999988877643 45778999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC
Q 006220          556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH  588 (656)
Q Consensus       556 sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h  588 (656)
                      +|+|++|++++.++.|.+||+.+++.+..+..+
T Consensus       303 s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          303 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             CSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            999999988888999999999999988877644

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.73  E-value=1.6e-16  Score=181.62  Aligned_cols=242  Identities=13%  Similarity=0.035  Sum_probs=174.0

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          348 INTHNGLNCASISQDGSLVAGG--FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g--~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      ..|...+.+++|++++-+++.+  ..++...||.....+.                            ...+..|...+.
T Consensus        20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------------~~~l~~~~~~~~   71 (662)
T 3azo_A           20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA----------------------------EESALPAPWNVR   71 (662)
T ss_dssp             HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC----------------------------EEESSCTTCCBC
T ss_pred             hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC----------------------------cceeCCCCcccc
Confidence            4566789999999887777777  5588899999642111                            111222322222


Q ss_pred             ---------EEEEc--cCCCE-EEEEeC-CCeEEEEecc--CCceeEEeeC-----CCccEEEEEEecCCCEEEEEECC-
Q 006220          426 ---------SASFS--PLGDF-ILSSSA-DTTIRLWSTK--LNANLVCYKG-----HNYPVWDVQFNPQGHYFASSSHD-  484 (656)
Q Consensus       426 ---------~l~~s--pd~~~-L~s~s~-Dg~I~lwd~~--~~~~~~~~~~-----h~~~V~~l~~sp~~~~l~sgs~D-  484 (656)
                               ...|+  |||+. |+.++. +..|.+|++.  +......+..     |...+.+++|+|+|+.|++++.+ 
T Consensus        72 ~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~  151 (662)
T 3azo_A           72 NRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEF  151 (662)
T ss_dssp             CCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             ccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecc
Confidence                     34454  99998 766554 5566667665  2034455555     66788999999999999999877 


Q ss_pred             ---------CcEEEEECCC------CceeEEec-CCCCCeeEEEEcCCCCEEEEEECC--------CcEEEEeCC-CC--
Q 006220          485 ---------RTARIWSMDR------IQPLRIMA-GHLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVS-SG--  537 (656)
Q Consensus       485 ---------g~i~lwd~~~------~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~d--------g~V~iwd~~-~~--  537 (656)
                               ..|++||+.+      +.. ..+. .+...+..++|+|+|++|+.++.+        ..|++||+. ++  
T Consensus       152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~  230 (662)
T 3azo_A          152 TGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF  230 (662)
T ss_dssp             CSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred             cCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence                     5899999988      444 4555 556778889999999999988755        379999999 57  


Q ss_pred             -eeEEEEecCCCCeEEEEEcCCCCEEEEEECCC--cEEEEeCCCCeeeEeeeCCCcc--------EEEEEEcCCCCEEEE
Q 006220          538 -ECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--TIMMWDLASGRCVTPLMGHTSC--------VWTLAYSCEGSLLAS  606 (656)
Q Consensus       538 -~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg--~I~iwD~~~~~~~~~~~~h~~~--------V~~l~~s~~~~~l~s  606 (656)
                       +......+|...+..+.|+|||+++++++.+|  .|.+||+.+++.......+...        +.+++|++++.++++
T Consensus       231 ~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~  310 (662)
T 3azo_A          231 ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV  310 (662)
T ss_dssp             EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred             cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence             55555556678899999999999888888888  6777777666654433333222        567899999999999


Q ss_pred             EECCCcEEEEeCC
Q 006220          607 GSADCTVKLWDVT  619 (656)
Q Consensus       607 gs~Dg~I~iWd~~  619 (656)
                      ++. +.++||.+.
T Consensus       311 ~~~-~~~~l~~~d  322 (662)
T 3azo_A          311 HGK-GAAVLGILD  322 (662)
T ss_dssp             EBS-SSCEEEEEE
T ss_pred             EEc-CccEEEEEE
Confidence            998 999999443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.73  E-value=3.5e-16  Score=178.69  Aligned_cols=202  Identities=11%  Similarity=0.071  Sum_probs=150.1

Q ss_pred             CccCEEEEEEccCCCEEEEEeCC----------CeEEEEeccCC-----ceeEEee-CCCccEEEEEEecCCCEEEEEEC
Q 006220          420 HSGPVYSASFSPLGDFILSSSAD----------TTIRLWSTKLN-----ANLVCYK-GHNYPVWDVQFNPQGHYFASSSH  483 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~D----------g~I~lwd~~~~-----~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~  483 (656)
                      |...+.+++|+|||+.|++++.+          .+|++||+.+.     .....+. .+...+..++|||+|++|+.++.
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~  207 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAW  207 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEEC
Confidence            66788999999999999988877          58999999872     3344555 55667888999999999998885


Q ss_pred             CC--------cEEEEECC-CC---ceeEEecCCCCCeeEEEEcCCCCEEEEEECCC--cEEEEeCCCCeeEEEEecCCCC
Q 006220          484 DR--------TARIWSMD-RI---QPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--TVRLWDVSSGECVRIFIGHRSM  549 (656)
Q Consensus       484 Dg--------~i~lwd~~-~~---~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg--~V~iwd~~~~~~~~~~~~h~~~  549 (656)
                      ++        .|++||++ ++   .......++...+..++|+|+|+++++++.++  .|.+||+.+++.......+...
T Consensus       208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~  287 (662)
T 3azo_A          208 DHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF  287 (662)
T ss_dssp             CTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS
T ss_pred             CCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc
Confidence            53        79999998 56   44555555678899999999999888888888  6777777677765544433222


Q ss_pred             --------eEEEEEcCCCCEEEEEECCCcEEEE--eCCCCeeeEeeeCCCccEEEE-EEcCCCCEEEEEECCCc--EEEE
Q 006220          550 --------ILSLAMSPDGRYMASGDEDGTIMMW--DLASGRCVTPLMGHTSCVWTL-AYSCEGSLLASGSADCT--VKLW  616 (656)
Q Consensus       550 --------i~~l~~sp~g~~L~s~~~dg~I~iw--D~~~~~~~~~~~~h~~~V~~l-~~s~~~~~l~sgs~Dg~--I~iW  616 (656)
                              +.+++|+|+++++++++. +.++||  |+.+++ +..+..|.+.+.++ +++.+.-++++++.+..  |.+|
T Consensus       288 ~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          288 AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             cCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence                    567899999999999998 999999  655555 67777787778877 55544434455565544  5555


Q ss_pred             eCCCCCc
Q 006220          617 DVTTSTK  623 (656)
Q Consensus       617 d~~~~~~  623 (656)
                      |+.+++.
T Consensus       366 d~~~g~~  372 (662)
T 3azo_A          366 DTVTGRA  372 (662)
T ss_dssp             ETTTCCE
T ss_pred             ECCCCce
Confidence            6656553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.72  E-value=7.8e-16  Score=177.60  Aligned_cols=240  Identities=10%  Similarity=0.043  Sum_probs=178.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          353 GLNCASISQDGSLVAGGFSDS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg-----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      .+.+++|||||++||.+..++     .|++||+.+..                            ....... ...+.++
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~----------------------------~~~~~~~-~~~~~~~  176 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK----------------------------ELPDVLE-RVKFSCM  176 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE----------------------------EEEEEEE-EECSCCE
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC----------------------------CCccccc-CcccceE
Confidence            588999999999999876643     89999987521                            1111111 1236679


Q ss_pred             EEccCCCEEEEEeCCCe----------------EEEEeccCCce--eEEeeC--CCccEEEEEEecCCCEEEEEEC----
Q 006220          428 SFSPLGDFILSSSADTT----------------IRLWSTKLNAN--LVCYKG--HNYPVWDVQFNPQGHYFASSSH----  483 (656)
Q Consensus       428 ~~spd~~~L~s~s~Dg~----------------I~lwd~~~~~~--~~~~~~--h~~~V~~l~~sp~~~~l~sgs~----  483 (656)
                      +|+|||+.|+.++.++.                |++|++.++..  ...+..  |...+.++.|+|+|++|+.++.    
T Consensus       177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  256 (710)
T 2xdw_A          177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD  256 (710)
T ss_dssp             EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred             EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence            99999999999888766                99999988763  233333  4556789999999999988775    


Q ss_pred             -CCcEEEEECCC------Cc-eeEEecCCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCe--eEEEEecCCC-
Q 006220          484 -DRTARIWSMDR------IQ-PLRIMAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGE--CVRIFIGHRS-  548 (656)
Q Consensus       484 -Dg~i~lwd~~~------~~-~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d----g~V~iwd~~~~~--~~~~~~~h~~-  548 (656)
                       +..|++||+.+      +. ....+..+...+.. .|+|+|..|+..+..    +.|.+||+.++.  ....+..|.. 
T Consensus       257 ~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  335 (710)
T 2xdw_A          257 PVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK  335 (710)
T ss_dssp             SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred             CccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC
Confidence             57899999976      43 45566666666655 488899888776653    369999998874  2344555544 


Q ss_pred             -CeEEEEEcCCCCEEEEEECCCc--EEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEE-E---CCCcEEEEeCCCC
Q 006220          549 -MILSLAMSPDGRYMASGDEDGT--IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG-S---ADCTVKLWDVTTS  621 (656)
Q Consensus       549 -~i~~l~~sp~g~~L~s~~~dg~--I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sg-s---~Dg~I~iWd~~~~  621 (656)
                       .+..++|++++.++++...++.  |.+||+.+|+.+..+..+.+.|.+++++|++..++.. +   ..++|+.||+.++
T Consensus       336 ~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          336 DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (710)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence             6888999988888888888884  6667877788888888888889999999998766533 3   3478999999887


Q ss_pred             C
Q 006220          622 T  622 (656)
Q Consensus       622 ~  622 (656)
                      +
T Consensus       416 ~  416 (710)
T 2xdw_A          416 E  416 (710)
T ss_dssp             S
T ss_pred             c
Confidence            6

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.72  E-value=2e-15  Score=154.43  Aligned_cols=237  Identities=12%  Similarity=0.051  Sum_probs=176.4

Q ss_pred             EeeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          347 FINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      +........+++|+|+|+ +++++..++.|..|+....                              ...+..+...+.
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~------------------------------~~~~~~~~~~~~   72 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ------------------------------LSPEMHPSHHQN   72 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC------------------------------EEEEESSCSSEE
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC------------------------------eEEEECCCCCcc
Confidence            334556688999999998 7888888999999997641                              233445667899


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC----CccEEEEEEecCCCEEEEEEC-----------------C
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHYFASSSH-----------------D  484 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~sgs~-----------------D  484 (656)
                      +++++++|+++++...++.|.+||..+++........    ...+.+++++|+|+++++.+.                 .
T Consensus        73 ~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~  152 (296)
T 3e5z_A           73 GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG  152 (296)
T ss_dssp             EEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred             eeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence            9999999998888777889999999777654333221    234678999999998887321                 2


Q ss_pred             CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCee---EEEEecCCCCeEEEEEcCCCC
Q 006220          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGEC---VRIFIGHRSMILSLAMSPDGR  560 (656)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~-~~~~---~~~~~~h~~~i~~l~~sp~g~  560 (656)
                      +.|..++.. + .+..+..+......++|+|+++.+++.+.++.|++||+. ++..   ...+..+...+..++++++|+
T Consensus       153 ~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          153 RWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             CEEEEECTT-S-CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred             cEEEEECCC-C-CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence            455555554 3 344455666778999999999999777778999999997 5554   344433455677899999998


Q ss_pred             EEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEE-cCCCCEEEEEECCCcEEEEeCCC
Q 006220          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY-SCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       561 ~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~-s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      ++++.  ++.|.+||.. ++.+..+..+.. +.+++| +++++.|++++.++ +.-++..+
T Consensus       231 l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          231 IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred             EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence            66666  7899999985 888888887777 899999 68999898888763 33344433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.72  E-value=1.1e-15  Score=159.59  Aligned_cols=223  Identities=12%  Similarity=0.080  Sum_probs=158.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC---Cc--EEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          352 NGLNCASISQDGSLVAGGFSD---SS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~d---g~--I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      ..+.+++|||||++||.++.+   +.  |.+|++.+                            ..... +..+.. +.+
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~----------------------------g~~~~-l~~~~~-~~~  108 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET----------------------------LSSKK-ILEAKN-IRS  108 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT----------------------------TEEEE-EEEESE-EEE
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC----------------------------CceEE-EEcCCC-ccc
Confidence            468899999999999987654   34  66666553                            11112 222334 999


Q ss_pred             EEEccCCCEEEEEeCC---------------------------CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEE
Q 006220          427 ASFSPLGDFILSSSAD---------------------------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA  479 (656)
Q Consensus       427 l~~spd~~~L~s~s~D---------------------------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~  479 (656)
                      ++|+|+|+.|+.++.+                           ..|.+||+.+++.+..+.. . .+..+.|+|+| +++
T Consensus       109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~  185 (347)
T 2gop_A          109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVV  185 (347)
T ss_dssp             EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEE
T ss_pred             eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEE
Confidence            9999999988877642                           5799999988876344444 3 78899999999 777


Q ss_pred             EEECCC-------cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC--------CcEEEEeCCCCeeEEEEe
Q 006220          480 SSSHDR-------TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFI  544 (656)
Q Consensus       480 sgs~Dg-------~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d--------g~V~iwd~~~~~~~~~~~  544 (656)
                      +++.++       ...+|.+++++ ...+..+ ..+..+  +|+|++|+.++.+        ..|.+||  +++......
T Consensus       186 ~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~  259 (347)
T 2gop_A          186 NVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD  259 (347)
T ss_dssp             EEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST
T ss_pred             EEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc
Confidence            776542       34555444444 3344434 444444  8999999887754        3688888  666555555


Q ss_pred             cCCCCeEE-EEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcE-EEEeCC
Q 006220          545 GHRSMILS-LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV-KLWDVT  619 (656)
Q Consensus       545 ~h~~~i~~-l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I-~iWd~~  619 (656)
                      ++...+.. +.|+ +| ++++++.++.++|| +.+++. ..+..+.+.|.+++|++  .++++++.++.. .+|.+.
T Consensus       260 ~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          260 EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            66677886 9999 88 88999999999999 876655 44445578899999999  688888877765 777776

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.72  E-value=2e-15  Score=159.64  Aligned_cols=201  Identities=9%  Similarity=0.060  Sum_probs=146.6

Q ss_pred             CccCEEEEEEccCCCEEEEEeCCCeEEEEecc-CCceeEEee--CCCccEEEEEEecCCCE--EEEEE------------
Q 006220          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTK-LNANLVCYK--GHNYPVWDVQFNPQGHY--FASSS------------  482 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~-~~~~~~~~~--~h~~~V~~l~~sp~~~~--l~sgs------------  482 (656)
                      +...+..++|+|++++|++++.+ .|.+|++. +++......  .+. .+.+++|+|+|++  +++++            
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC-CCccEEECCCCCEEEEEEecCCcceeccceee
Confidence            34467889999999999999888 99999997 666543322  112 3557899999994  44553            


Q ss_pred             -CCCcEEEEECC-CCceeEEec----CCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCC-CCeeE--EEEe--cCCCCe
Q 006220          483 -HDRTARIWSMD-RIQPLRIMA----GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVS-SGECV--RIFI--GHRSMI  550 (656)
Q Consensus       483 -~Dg~i~lwd~~-~~~~~~~~~----~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~-~~~~~--~~~~--~h~~~i  550 (656)
                       .+|++.+|+++ .++....+.    .+...+.+++|+|+|+++++++. ++.|++||+. +++..  ..+.  .|...+
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p  195 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence             68999999997 455443333    24567999999999999888764 6799999998 77653  2333  245678


Q ss_pred             EEEEEcCCCCEEEEEEC-CCcEEEEeCC--CCeee---Eeee-------CCCc------cEEEEE-EcCCCCEEEEEECC
Q 006220          551 LSLAMSPDGRYMASGDE-DGTIMMWDLA--SGRCV---TPLM-------GHTS------CVWTLA-YSCEGSLLASGSAD  610 (656)
Q Consensus       551 ~~l~~sp~g~~L~s~~~-dg~I~iwD~~--~~~~~---~~~~-------~h~~------~V~~l~-~s~~~~~l~sgs~D  610 (656)
                      ..++|+|+|++|++++. ++.|.+|++.  +++..   ..+.       +|..      .+.+++ |+|||++|++++.+
T Consensus       196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence            99999999999988775 6899999875  56542   1221       1222      588999 99999988776543


Q ss_pred             -C-----cEEEEeCC-CCC
Q 006220          611 -C-----TVKLWDVT-TST  622 (656)
Q Consensus       611 -g-----~I~iWd~~-~~~  622 (656)
                       +     +|.+|++. +++
T Consensus       276 ~~~~~~~~i~v~~~~~~g~  294 (365)
T 1jof_A          276 NKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSC
T ss_pred             CCCCCCCeEEEEEECCCCC
Confidence             2     89999996 443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.72  E-value=9.7e-17  Score=170.34  Aligned_cols=237  Identities=9%  Similarity=-0.026  Sum_probs=164.4

Q ss_pred             eEEEEEcCCCCEEEEEeCC-C--cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC-EEEEEE
Q 006220          354 LNCASISQDGSLVAGGFSD-S--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-VYSASF  429 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~d-g--~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~l~~  429 (656)
                      +.+++|||||++|+.+... +  .|.+|++....                            . ..+..+... ...+.|
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~----------------------------~-~~l~~~~~~~~~~~~~   88 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ----------------------------A-VQLTEGKGDNTFGGFI   88 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE----------------------------E-EECCCSSCBCTTTCEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc----------------------------E-EEeecCCCCccccceE
Confidence            6788999999998877553 3  57777765421                            1 112222222 233789


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEE-------------------EEEecCCCEEEEE-----ECCC
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD-------------------VQFNPQGHYFASS-----SHDR  485 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-------------------l~~sp~~~~l~sg-----s~Dg  485 (656)
                      +|+|+.|+.++.++.|++|++.+++.......+......                   +.|+|++..++.+     ..+.
T Consensus        89 spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~  168 (396)
T 3c5m_A           89 STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC  168 (396)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred             CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence            999999999999999999999988766655544432222                   3466777766544     3567


Q ss_pred             cEEEEECCCCceeEEecCCCCCeeEEEEcC-CCCEEEEEECC------CcEEEEeCCCCeeEEEEecC-CCCeEEEEEcC
Q 006220          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSD------KTVRLWDVSSGECVRIFIGH-RSMILSLAMSP  557 (656)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~d------g~V~iwd~~~~~~~~~~~~h-~~~i~~l~~sp  557 (656)
                      .|++||+.+++..... .+...+..+.|+| ++..|+..+.+      ..|.+||+.++......... ...+..++|+|
T Consensus       169 ~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp  247 (396)
T 3c5m_A          169 RLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP  247 (396)
T ss_dssp             EEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT
T ss_pred             eEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC
Confidence            8999999987765555 4667789999999 78877776643      36889998766544333211 22578899999


Q ss_pred             CCCEEEEEECC-----CcEEEEeCCCCeeeEeeeCCCccEEEEEEcC-CCCEEEEEE----------------CCCcEEE
Q 006220          558 DGRYMASGDED-----GTIMMWDLASGRCVTPLMGHTSCVWTLAYSC-EGSLLASGS----------------ADCTVKL  615 (656)
Q Consensus       558 ~g~~L~s~~~d-----g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~sgs----------------~Dg~I~i  615 (656)
                      +|++|+.++.+     +.|.+||+.+++....... .+ .. +.|+| +|+++++++                .++.|++
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~  324 (396)
T 3c5m_A          248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV  324 (396)
T ss_dssp             TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred             CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence            99987776544     4499999988865432222 12 23 88999 999888765                3478999


Q ss_pred             EeCCCCCc
Q 006220          616 WDVTTSTK  623 (656)
Q Consensus       616 Wd~~~~~~  623 (656)
                      ||+.++..
T Consensus       325 ~d~~~~~~  332 (396)
T 3c5m_A          325 LNTKAKSA  332 (396)
T ss_dssp             EETTTTBC
T ss_pred             EecccCce
Confidence            99987654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=3.3e-16  Score=166.12  Aligned_cols=237  Identities=12%  Similarity=0.028  Sum_probs=162.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE--Ec
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS--FS  430 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~--~s  430 (656)
                      .+.+++|||||+.|+.++.++.|++||+.+..                            .......+.+.+....  ++
T Consensus        82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~----------------------------~~~~~~~~~~~~~~~~~~~~  133 (388)
T 3pe7_A           82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLE----------------------------ENVVYQVPAEWVGYGTWVAN  133 (388)
T ss_dssp             CSSSCEECTTSSEEEEEETTTEEEEEETTTCC----------------------------EEEEEECCTTEEEEEEEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCeEEEEECCCCc----------------------------ceeeeechhhcccccceeEC
Confidence            34477899999999999999999999987521                            1222333444443333  48


Q ss_pred             cCCCEEEEE----------------------eCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECC---
Q 006220          431 PLGDFILSS----------------------SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHD---  484 (656)
Q Consensus       431 pd~~~L~s~----------------------s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~D---  484 (656)
                      |+++.++..                      +.++.|.+||+.+++... +..+...+..+.|+| +|..++.++.+   
T Consensus       134 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~  212 (388)
T 3pe7_A          134 SDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHD  212 (388)
T ss_dssp             TTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTT
T ss_pred             CCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCC
Confidence            899887742                      244789999999886544 344666789999999 99999887753   


Q ss_pred             ---CcEEEEECCCCceeEEecCCC--CCeeEEEEcCCCCEEEEEEC-CC----cEEEEeCCCCeeEEE--EecCCCC---
Q 006220          485 ---RTARIWSMDRIQPLRIMAGHL--SDVDCVRWHINCNYIATGSS-DK----TVRLWDVSSGECVRI--FIGHRSM---  549 (656)
Q Consensus       485 ---g~i~lwd~~~~~~~~~~~~~~--~~V~~v~~~p~~~~l~tgs~-dg----~V~iwd~~~~~~~~~--~~~h~~~---  549 (656)
                         ..|.++|....... .+..+.  ..+...+|+|+|+.|+..+. ++    .|++||+.+++....  +.++...   
T Consensus       213 ~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~  291 (388)
T 3pe7_A          213 LVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSN  291 (388)
T ss_dssp             TSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEEC
T ss_pred             CCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeec
Confidence               37888888765443 343343  25778899999998765443 22    399999999875433  2221000   


Q ss_pred             eEEEEEcCCCCEEEEE---------ECCCcEEEEeCCCCeeeEeeeCCCc-----------cEEEEEEcCCCCEEEEEE-
Q 006220          550 ILSLAMSPDGRYMASG---------DEDGTIMMWDLASGRCVTPLMGHTS-----------CVWTLAYSCEGSLLASGS-  608 (656)
Q Consensus       550 i~~l~~sp~g~~L~s~---------~~dg~I~iwD~~~~~~~~~~~~h~~-----------~V~~l~~s~~~~~l~sgs-  608 (656)
                      ...+.|+|||+.|+..         ..+..|.+||+.+++. ..+..|..           .+.+++|+|||+.|+.++ 
T Consensus       292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             TTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence            1123799999988754         4566899999988765 44555554           578899999999887766 


Q ss_pred             CCCcEEEEeCCC
Q 006220          609 ADCTVKLWDVTT  620 (656)
Q Consensus       609 ~Dg~I~iWd~~~  620 (656)
                      .+|...||.+.-
T Consensus       371 ~~g~~~l~~~~l  382 (388)
T 3pe7_A          371 VHGKPALYLATL  382 (388)
T ss_dssp             TTSSCEEEEEEC
T ss_pred             CCCceeEEEEEC
Confidence            567777776644

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.71  E-value=2.4e-15  Score=151.07  Aligned_cols=240  Identities=9%  Similarity=0.020  Sum_probs=174.8

Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       353 ~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ...+++++++|++++ +.+.++.|.+|+......                            ......+...+.++++++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~----------------------------~~~~~~~~~~p~~i~~~~   76 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT----------------------------TVLPFNGLYQPQGLAVDG   76 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC---------------------------------EECCCCSCCSCCCEEECT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCccc----------------------------ceEeeCCcCCcceeEECC
Confidence            678999999999777 546788999998653110                            000112334567899999


Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEee-CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeE
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC  510 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~  510 (656)
                      +++++++.. ++.|.+||...... ..+. .....+.+++++++|..+++...++.|.+|+..+.............+.+
T Consensus        77 ~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~  154 (270)
T 1rwi_B           77 AGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDG  154 (270)
T ss_dssp             TCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCC
T ss_pred             CCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCcee
Confidence            998666665 88999999875543 3332 23356889999999998777777899999987655443333334456889


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCc
Q 006220          511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS  590 (656)
Q Consensus       511 v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~  590 (656)
                      ++++++++.+++...++.|.+||...+........+...+.+++++++|.++++...++.|.+||............+..
T Consensus       155 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~  234 (270)
T 1rwi_B          155 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN  234 (270)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCS
T ss_pred             EEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCC
Confidence            99999999777777788999999887665543333446789999999998777777788999999865543332223335


Q ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          591 CVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       591 ~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      .+.+++++++|+++++...++.|+++++...+
T Consensus       235 ~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          235 TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            78999999999988998999999999987654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.70  E-value=3.7e-15  Score=155.59  Aligned_cols=220  Identities=11%  Similarity=0.103  Sum_probs=156.8

Q ss_pred             CeEEEEEcCCCCEEEEEe---------CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          353 GLNCASISQDGSLVAGGF---------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~---------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      .+...++  ||+.+|...         .++.|.+|++.+.                            . ...+    ..
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~----------------------------~-~~~l----~~   60 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN----------------------------A-RRFI----EN   60 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC----------------------------C-EEEE----ES
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC----------------------------c-eEEc----cc
Confidence            4666777  888887652         2567888887641                            1 1112    56


Q ss_pred             EEEEEEccCCCEEEEEeCC---C--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC--------------
Q 006220          424 VYSASFSPLGDFILSSSAD---T--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD--------------  484 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~D---g--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D--------------  484 (656)
                      +.+++|||||++|+.++.+   +  .|.+|++.+++.......+ . +..++|+|+|+.|+.++.+              
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence            8889999999999877654   3  4788888877665544433 3 9999999999999888742              


Q ss_pred             -------------CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCC-------cEEEEeCCCCeeEEEEe
Q 006220          485 -------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK-------TVRLWDVSSGECVRIFI  544 (656)
Q Consensus       485 -------------g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg-------~V~iwd~~~~~~~~~~~  544 (656)
                                   ..|++||+.+++.+..+.. . .+..++|+|+| ++++++.++       ...+|.+.+++... +.
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-l~  214 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEK-MF  214 (347)
T ss_dssp             CC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEE-EE
T ss_pred             eeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEE-ec
Confidence                         5799999988876444544 3 78899999999 777776542       33444444555443 44


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECC--------CcEEEEeCCCCeeeEeeeCCCccEEE-EEEcCCCCEEEEEECCCcEEE
Q 006220          545 GHRSMILSLAMSPDGRYMASGDED--------GTIMMWDLASGRCVTPLMGHTSCVWT-LAYSCEGSLLASGSADCTVKL  615 (656)
Q Consensus       545 ~h~~~i~~l~~sp~g~~L~s~~~d--------g~I~iwD~~~~~~~~~~~~h~~~V~~-l~~s~~~~~l~sgs~Dg~I~i  615 (656)
                      .+ ..+..+  +|+|++|+.++.+        ..|.+||  +++.......|...+.. +.|+ ++ ++++++.++.+++
T Consensus       215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l  287 (347)
T 2gop_A          215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNL  287 (347)
T ss_dssp             EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred             cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEE
Confidence            44 555554  9999998887754        3688888  56554444566778886 9999 88 9999999999999


Q ss_pred             EeCCCC
Q 006220          616 WDVTTS  621 (656)
Q Consensus       616 Wd~~~~  621 (656)
                      | +.++
T Consensus       288 ~-~~~g  292 (347)
T 2gop_A          288 Y-IWDG  292 (347)
T ss_dssp             E-EESS
T ss_pred             E-EcCC
Confidence            9 8743

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.69  E-value=6e-15  Score=155.89  Aligned_cols=263  Identities=14%  Similarity=0.081  Sum_probs=178.7

Q ss_pred             cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCCcccccccCCCCCCCC
Q 006220          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS----------DSSLKVWDMAKLGQQAVSSGLQGENDTT  399 (656)
Q Consensus       330 ~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~----------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~  399 (656)
                      ..+++++....... .++..... - .++|||||+++.++..          ++.|.+||..+......           
T Consensus        31 ~~v~v~D~~t~~~~-~~i~~g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~-----------   96 (361)
T 2oiz_A           31 SRVHVYDYTNGKFL-GMVPTAFN-G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKE-----------   96 (361)
T ss_dssp             CEEEEEETTTCCEE-EEEECCEE-E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEE-----------
T ss_pred             CeEEEEECCCCeEE-EEecCCCC-C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEE-----------
Confidence            45666654333222 23322222 3 8999999999998863          56799999864221111           


Q ss_pred             CCccccCCCCCceeeEEee---cCccCEEEEEEccCCCEEEEEeC--CCeEEEEeccCCceeEE-eeCCCccEEEEEEec
Q 006220          400 PREDIIGPNGRKRSYTLYQ---GHSGPVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNP  473 (656)
Q Consensus       400 ~~~~~~~~~~~~~~~~~l~---~h~~~V~~l~~spd~~~L~s~s~--Dg~I~lwd~~~~~~~~~-~~~h~~~V~~l~~sp  473 (656)
                                    +....   .+......++|+|+|++|+++..  +++|.+||+.+++.+.. +...  ..+.+.+.|
T Consensus        97 --------------i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p  160 (361)
T 2oiz_A           97 --------------ISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQP  160 (361)
T ss_dssp             --------------EEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECT
T ss_pred             --------------EEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcC
Confidence                          00000   02234567899999999998864  58999999999987776 5432  234466778


Q ss_pred             CC-CEEEEEECCCcEEEEECCC-CceeEE------ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee--EEEE
Q 006220          474 QG-HYFASSSHDRTARIWSMDR-IQPLRI------MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC--VRIF  543 (656)
Q Consensus       474 ~~-~~l~sgs~Dg~i~lwd~~~-~~~~~~------~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~--~~~~  543 (656)
                      ++ ..+++.+.||.+.+|+.+. ++....      +..+..++ .+.+++++..++..+.++.|.++|+..+..  ...+
T Consensus       161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~  239 (361)
T 2oiz_A          161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPW  239 (361)
T ss_dssp             TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEE
T ss_pred             CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccc
Confidence            65 6788889999999999865 443311      12222222 233457777888888899999999875532  2222


Q ss_pred             ec------CC----CCeEEEEEcCCCCEEEEEEC-----------CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC
Q 006220          544 IG------HR----SMILSLAMSPDGRYMASGDE-----------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS  602 (656)
Q Consensus       544 ~~------h~----~~i~~l~~sp~g~~L~s~~~-----------dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~  602 (656)
                      ..      +.    .....++|+|+++.++++..           .+.|.+||+.+++.+.++..+.  +++++|+|+|+
T Consensus       240 ~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~  317 (361)
T 2oiz_A          240 SLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRN  317 (361)
T ss_dssp             ESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTT
T ss_pred             cccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCC
Confidence            11      00    11123789999888777643           3489999999999999998877  89999999999


Q ss_pred             EEEEEECCCcEEEEeCCCC--Cceee
Q 006220          603 LLASGSADCTVKLWDVTTS--TKVLK  626 (656)
Q Consensus       603 ~l~sgs~Dg~I~iWd~~~~--~~~~~  626 (656)
                      +|++++. ++|.+||..++  +.+..
T Consensus       318 ~l~v~n~-~~v~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          318 LMLTLDG-GNVNVYDISQPEPKLLRT  342 (361)
T ss_dssp             EEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred             EEEEeCC-CeEEEEECCCCcceeeEE
Confidence            9998886 99999999998  65543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.68  E-value=7e-14  Score=145.16  Aligned_cols=238  Identities=11%  Similarity=0.062  Sum_probs=170.9

Q ss_pred             eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       343 ~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      ....+..+...+.+++|+++|++++++..++.|.+|+.....                            .......+..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~----------------------------~~~~~~~~~~   87 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE----------------------------IKRPFVSHKA   87 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC----------------------------EEEEEECSSS
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc----------------------------EEEEeeCCCC
Confidence            344556666778999999999988888889999999876411                            1111224567


Q ss_pred             CEEEEEEccCCCEEEEEeCC----CeEEEEeccCCceeEEee--CCCccEEEEEEecCCCEEEEEEC------CCcEEEE
Q 006220          423 PVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSH------DRTARIW  490 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~D----g~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs~------Dg~i~lw  490 (656)
                      .+.+++|+|++++++++..+    +.|.+||..++.....+.  .+...+.+++++|+|.++++...      .+.|..|
T Consensus        88 ~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~  167 (333)
T 2dg1_A           88 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV  167 (333)
T ss_dssp             SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred             CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEE
Confidence            89999999999988877766    689999998776543332  24457899999999987776653      2456666


Q ss_pred             ECCCCceeEEecCCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCC-CeeEEE-----E---ecCCCCeEEEEEcCCCC
Q 006220          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS-GECVRI-----F---IGHRSMILSLAMSPDGR  560 (656)
Q Consensus       491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~-~~~~~~-----~---~~h~~~i~~l~~sp~g~  560 (656)
                      +.++++.... ..+...+..++|+|++++++.+ +.++.|.+||+.+ +..+..     +   .++ ..+..++++++|+
T Consensus       168 ~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~  245 (333)
T 2dg1_A          168 SPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN  245 (333)
T ss_dssp             CTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC
T ss_pred             eCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC
Confidence            6655444333 2334567899999999866554 4578999999964 333221     1   122 3678899999999


Q ss_pred             EEEEEECCCcEEEEeCCCCeeeEeeeCCCc------cEEEEEEcCCCCEEEEEECCC
Q 006220          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTS------CVWTLAYSCEGSLLASGSADC  611 (656)
Q Consensus       561 ~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~------~V~~l~~s~~~~~l~sgs~Dg  611 (656)
                      ++++...++.|.+||. .++.+..+..+..      .+.+++|++++..|+.++.++
T Consensus       246 l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          246 LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            8888888899999998 5777777655443      689999999987776665553

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=1.4e-15  Score=161.40  Aligned_cols=245  Identities=11%  Similarity=0.011  Sum_probs=159.7

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC-----EEEEEE
Q 006220          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-----VYSASF  429 (656)
Q Consensus       355 ~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-----V~~l~~  429 (656)
                      .++.|||||++|+.++.++.|.+|++.+............   .       .+.  +.  .........     ...+.|
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~-------~~~--g~--~l~~~~~~~~~~~~~~~~~~  149 (396)
T 3c5m_A           84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE---W-------KGY--GT--WVANSDCTKLVGIEILKRDW  149 (396)
T ss_dssp             TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT---E-------EEE--EE--EEECTTSSEEEEEEEEGGGC
T ss_pred             ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc---c-------CCC--CC--EEEeccCCcccccccccccc
Confidence            3478999999999999999999999875332111110000   0       000  00  000000000     011457


Q ss_pred             ccCCCEEEEE-----eCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECC------CcEEEEECCCCce
Q 006220          430 SPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHD------RTARIWSMDRIQP  497 (656)
Q Consensus       430 spd~~~L~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~D------g~i~lwd~~~~~~  497 (656)
                      +|+++.++.+     ..+..|.+||+.+++..... .+...+..+.|+| ++..|+.++.+      ..|.+||++....
T Consensus       150 spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~  228 (396)
T 3c5m_A          150 QPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV  228 (396)
T ss_dssp             CCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred             CCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence            8888877654     45678999999987765444 4667789999999 78877776643      3688889876554


Q ss_pred             eEEecCC-CCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEEE----
Q 006220          498 LRIMAGH-LSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD----  566 (656)
Q Consensus       498 ~~~~~~~-~~~V~~v~~~p~~~~l~tgs~d-----g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~L~s~~----  566 (656)
                      ....... ...+..++|+|+|++|+.++.+     +.|++||+.+++....... .. .. +.|+| +|+++++++    
T Consensus       229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p  305 (396)
T 3c5m_A          229 RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAP  305 (396)
T ss_dssp             EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC-
T ss_pred             eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcc
Confidence            3333311 2357889999999988777544     4499999998876554322 22 33 89999 999888765    


Q ss_pred             ------------CCCcEEEEeCCCCeeeEeeeCCCc-----------cEEEEEEcCCCCEEEEEEC-CCcEEEEeC
Q 006220          567 ------------EDGTIMMWDLASGRCVTPLMGHTS-----------CVWTLAYSCEGSLLASGSA-DCTVKLWDV  618 (656)
Q Consensus       567 ------------~dg~I~iwD~~~~~~~~~~~~h~~-----------~V~~l~~s~~~~~l~sgs~-Dg~I~iWd~  618 (656)
                                  .++.|.+||+.+++. ..+..+..           .+.+++|+|+|+.|+.++. ++...+|.+
T Consensus       306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          306 VDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             ---------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             eeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence                        347899999988764 34444443           2567899999998887765 455555544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=1.2e-14  Score=150.89  Aligned_cols=235  Identities=12%  Similarity=0.078  Sum_probs=175.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ..|.+++|++++..++..+.++.++.|.-                               .....+..+...+.+++|++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   54 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA-------------------------------EPWLEISKKGLQLEGLNFDR   54 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC-------------------------------EEEEEEESSCCCEEEEEECT
T ss_pred             cccceeeecCCccceeEEeecccCccccc-------------------------------ceeEEEeccCccccCcEECC
Confidence            45778889998887777778888888831                               23444556667789999999


Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC----CcEEEEECCCCceeEEec--CCC
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQPLRIMA--GHL  505 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D----g~i~lwd~~~~~~~~~~~--~~~  505 (656)
                      ++++++++..++.|.+||..+++.......+...+.+++|+|+|++++++..+    +.|.+||.++......+.  .+.
T Consensus        55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  134 (333)
T 2dg1_A           55 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  134 (333)
T ss_dssp             TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence            99988888889999999998877655444566789999999999988877666    689999998876554443  244


Q ss_pred             CCeeEEEEcCCCCEEEEEEC------CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEeCCC
Q 006220          506 SDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLAS  578 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~------dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iwD~~~  578 (656)
                      ..+.+++++|+|+.+++...      .+.|..||..+++..... .+...+..++|+|+|+.|+.+ +.++.|.+||+.+
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            57899999999987776653      356777776655544332 333457899999999866554 4578999999964


Q ss_pred             -CeeeEe--------eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          579 -GRCVTP--------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       579 -~~~~~~--------~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                       +..+..        +.++ ..+..++++++|+++++...++.|.+||..
T Consensus       214 ~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          214 DGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             TSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence             333221        1122 467889999999988888888999999984

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.66  E-value=2.1e-15  Score=174.90  Aligned_cols=197  Identities=12%  Similarity=0.196  Sum_probs=152.8

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCcc-----EEEEEEecCCCEEEEEECC---------CcE
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP-----VWDVQFNPQGHYFASSSHD---------RTA  487 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~-----V~~l~~sp~~~~l~sgs~D---------g~i  487 (656)
                      ....++.|+|++++++++  ||+|++||+.++++...+.+|...     ..++.|||||++++.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            345689999999988886  899999999999988888877643     2347899999999999876         566


Q ss_pred             EEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-ecCCCCe----------------
Q 006220          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMI----------------  550 (656)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~i----------------  550 (656)
                      .+||+.+++... +..|...+...+|||+|+.||.++ ++.|++||+.++...+.. .++...+                
T Consensus        95 ~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           95 DIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            799999987553 556778899999999999999884 789999999988765532 2222222                


Q ss_pred             -EEEEEcCCCCEEEEEECCC------------------------------------cEEEEeCCC---Ce--eeEeee--
Q 006220          551 -LSLAMSPDGRYMASGDEDG------------------------------------TIMMWDLAS---GR--CVTPLM--  586 (656)
Q Consensus       551 -~~l~~sp~g~~L~s~~~dg------------------------------------~I~iwD~~~---~~--~~~~~~--  586 (656)
                       ..+.|||||+.|+.++.|.                                    .|.+||+.+   +.  ....+.  
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence             3489999999999875322                                    488899988   73  223333  


Q ss_pred             ----CCCccEEEEEEcCCCCEEEEEEC----CCcEEEEeCCCCC
Q 006220          587 ----GHTSCVWTLAYSCEGSLLASGSA----DCTVKLWDVTTST  622 (656)
Q Consensus       587 ----~h~~~V~~l~~s~~~~~l~sgs~----Dg~I~iWd~~~~~  622 (656)
                          +|...+..++|+|||+.++....    +..|++||+.+++
T Consensus       253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence                37788999999999997766543    3479999999876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.65  E-value=2.5e-15  Score=172.89  Aligned_cols=240  Identities=14%  Similarity=0.027  Sum_probs=168.4

Q ss_pred             CCeEEEEEcCCCCEEEEE-----eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          352 NGLNCASISQDGSLVAGG-----FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g-----~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      ..+.+++|||||++||.+     +.+..|++||+.+.....                          ...+.+.  ...+
T Consensus       121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--------------------------~~~~~~~--~~~~  172 (695)
T 2bkl_A          121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--------------------------VDVIEGG--KYAT  172 (695)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--------------------------SCCBSCC--TTCC
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--------------------------CcccCcc--cccc
Confidence            358999999999999944     345689999998632110                          0000011  1156


Q ss_pred             EEEccCCCEEEEEeCCCe-------------EEEEeccCCce--eEEee--CCCccEEEEEEecCCCEEEEEECCC----
Q 006220          427 ASFSPLGDFILSSSADTT-------------IRLWSTKLNAN--LVCYK--GHNYPVWDVQFNPQGHYFASSSHDR----  485 (656)
Q Consensus       427 l~~spd~~~L~s~s~Dg~-------------I~lwd~~~~~~--~~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg----  485 (656)
                      ++|+|||+.|+.++.|..             |++|++.++..  ...+.  .|...+.++.|+|+|++++.++.++    
T Consensus       173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  252 (695)
T 2bkl_A          173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN  252 (695)
T ss_dssp             CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred             eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence            899999999999988776             99999988763  23333  3556788999999999998888666    


Q ss_pred             cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCCCCee---EEEEecC-CCCeEEEEEcC
Q 006220          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGEC---VRIFIGH-RSMILSLAMSP  557 (656)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~----dg~V~iwd~~~~~~---~~~~~~h-~~~i~~l~~sp  557 (656)
                      .|++|+..++.. ..+..+...+....| ++|. ++..+.    ++.|.+||+.++..   ...+..+ ...+..++|+ 
T Consensus       253 ~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-  328 (695)
T 2bkl_A          253 DVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-  328 (695)
T ss_dssp             EEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-
T ss_pred             EEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-
Confidence            677776655543 444445556666666 5666 554443    57899999987753   3333333 4467888888 


Q ss_pred             CCCEEEEEECCCcEEEEeCC-CCeeeEeeeCC-CccEEEEEEcCCCCEEEEEE----CCCcEEEEeCCCCCc
Q 006220          558 DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGH-TSCVWTLAYSCEGSLLASGS----ADCTVKLWDVTTSTK  623 (656)
Q Consensus       558 ~g~~L~s~~~dg~I~iwD~~-~~~~~~~~~~h-~~~V~~l~~s~~~~~l~sgs----~Dg~I~iWd~~~~~~  623 (656)
                      ++.++++...|+..+||.+. .++....+..+ .+.|..++++|++..++...    ..++|++||+.+++.
T Consensus       329 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          329 GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            67888889999988888664 46666666655 57788899999987766332    347899999988764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.64  E-value=5.2e-14  Score=146.54  Aligned_cols=205  Identities=15%  Similarity=0.205  Sum_probs=161.0

Q ss_pred             ccCEEEEEEccCCCEEEEEeCC------------------------CeEEEEeccCCceeEEee-CCCccEEEEEEecCC
Q 006220          421 SGPVYSASFSPLGDFILSSSAD------------------------TTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQG  475 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~D------------------------g~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~  475 (656)
                      -+.|.+++++|+|+++++.+.+                        ++|.+||..+++.+..+. ++.....+++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3679999999999999888877                        479999998888766554 344578899999999


Q ss_pred             CEEEEEECCCcEEEEECCCCc-eeEEe---------cCCCCCeeEEEEcC-CCCEEEEEE-CCCcEEEEeCCCCeeEEEE
Q 006220          476 HYFASSSHDRTARIWSMDRIQ-PLRIM---------AGHLSDVDCVRWHI-NCNYIATGS-SDKTVRLWDVSSGECVRIF  543 (656)
Q Consensus       476 ~~l~sgs~Dg~i~lwd~~~~~-~~~~~---------~~~~~~V~~v~~~p-~~~~l~tgs-~dg~V~iwd~~~~~~~~~~  543 (656)
                      +++++.+.++.|++||.+... .+..+         .++......++++| +++.+++.+ .++.|++|| .++..+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999986542 45555         34555789999999 788888876 689999999 677777776


Q ss_pred             ecCC----------CCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeeEeee--CCCccEEEEEEcCCCCEEEEE---
Q 006220          544 IGHR----------SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASG---  607 (656)
Q Consensus       544 ~~h~----------~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~sg---  607 (656)
                      ....          .....|+++|+ |.++++...++.|++||..+|+.+..+.  .+...+.+++|+| +..+++.   
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~  260 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP  260 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence            4322          34889999998 7777777788999999998899888874  4557789999999 4333333   


Q ss_pred             ----ECCCcEEEEeCCCCCceeec
Q 006220          608 ----SADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       608 ----s~Dg~I~iWd~~~~~~~~~~  627 (656)
                          ..++.|++|++.+++.....
T Consensus       261 ~v~~~~~~~v~~~~~~~g~~~~~~  284 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGEIIDVF  284 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCCEEEEE
T ss_pred             EeccCCCcEEEEEEcCCCeEEEEE
Confidence                34458999999888766543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=8.1e-14  Score=141.41  Aligned_cols=234  Identities=14%  Similarity=0.104  Sum_probs=179.8

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc-cCEEEEEEccCCCEEEEEe
Q 006220          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGDFILSSS  440 (656)
Q Consensus       362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spd~~~L~s~s  440 (656)
                      .+++|++++.++.|.+||..+                            ++....+..+. ..+.++.++|+|++++  +
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~t----------------------------G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s   53 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDT----------------------------KEIVWEYPLEKGWECNSVAATKAGEILF--S   53 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTT----------------------------TEEEEEEECCTTCCCCEEEECTTSCEEE--E
T ss_pred             CCcEEEeeCCCCEEEEEECCC----------------------------CeEEEEeCCCccCCCcCeEECCCCCEEE--e
Confidence            467899999999999999754                            23344444444 4678899999999888  3


Q ss_pred             CCCeEEEEeccCCceeEEeeCC-CccEEEEEEecCCCEEEEEEC-CCcEEEEECCCCceeEEec------CCCCCeeEEE
Q 006220          441 ADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRIMA------GHLSDVDCVR  512 (656)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~sgs~-Dg~i~lwd~~~~~~~~~~~------~~~~~V~~v~  512 (656)
                      .++.|..||. +++.+..+..+ ...+.++.+.++|+++++.+. ++.+..+|. +++.+..+.      .+......++
T Consensus        54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~  131 (276)
T 3no2_A           54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN  131 (276)
T ss_dssp             CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred             CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence            4778999999 78888888865 357889999999999999887 788888886 566665554      1223455678


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC---
Q 006220          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT---  589 (656)
Q Consensus       513 ~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~---  589 (656)
                      +.++|+++++.+.++.|..||.. |+.+..+... ..+.++.+.++|+.+++++.++.|..+|..+|+.+.++..+.   
T Consensus       132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~  209 (276)
T 3no2_A          132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG  209 (276)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS
T ss_pred             ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC
Confidence            89999999999999999999987 9999988765 345667889999999999888899999999999998886432   


Q ss_pred             ---ccEEEEEEcCCCCEEEEEECC--------CcEEEEeC-CCCCceeeccc
Q 006220          590 ---SCVWTLAYSCEGSLLASGSAD--------CTVKLWDV-TTSTKVLKTEE  629 (656)
Q Consensus       590 ---~~V~~l~~s~~~~~l~sgs~D--------g~I~iWd~-~~~~~~~~~~~  629 (656)
                         ..+.++...++|.++++....        +..+++.+ ..++.+.....
T Consensus       210 ~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          210 VQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             CCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred             ccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence               237888999999988887421        23456666 34444444433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.62  E-value=1e-12  Score=133.35  Aligned_cols=241  Identities=10%  Similarity=0.038  Sum_probs=177.2

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+......+.+++++++|++.++...++.|.+|+... ..                           .......+...+.
T Consensus         9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~-~~---------------------------~~~~~~~~~~~~~   60 (299)
T 2z2n_A            9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLDG-KI---------------------------TEYPLPTPDAKVM   60 (299)
T ss_dssp             ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CE---------------------------EEEECSSTTCCEE
T ss_pred             cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCC-Ce---------------------------EEecCCcccCcee
Confidence            3344456799999999999888776688999998651 10                           0011112346788


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee--CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ec
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MA  502 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~-~~  502 (656)
                      ++++++++.++++...++.|..|+.. +. ...+.  .....+.++++.++|.++++...++.|..||. +++.... ..
T Consensus        61 ~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~  137 (299)
T 2z2n_A           61 CLTISSDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP  137 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred             eEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC
Confidence            99999999988887778899999986 33 22232  34557889999999988887777889999998 4443332 23


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~-~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                      .+...+.++++.++++.+++...++.|..||. +++.... ...+...+.+++++++|++.++...++.|.+||. +++.
T Consensus       138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~  215 (299)
T 2z2n_A          138 NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI  215 (299)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence            34567899999999987777767789999998 6665543 2334456889999999997777667889999998 6654


Q ss_pred             eEe-eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          582 VTP-LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       582 ~~~-~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      ... ...+...+.+++++++|.++++...++.|.+||..
T Consensus       216 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence            332 23345678999999999977776678899999983

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.60  E-value=5.5e-13  Score=136.80  Aligned_cols=245  Identities=9%  Similarity=0.067  Sum_probs=171.5

Q ss_pred             eeCCCCeEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC
Q 006220          348 INTHNGLNCASISQDGSLVAG-------GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~-------g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h  420 (656)
                      ...-....+++|++++.++++       ++.++.|.+|+.........                        ......++
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------------~~~~~~~~   69 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------------------------CKPEVNGY   69 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE------------------------ECCEETTE
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE------------------------EecccCCC
Confidence            344456789999999998888       57788999998654211000                        00001124


Q ss_pred             ccCEEEEEEccC-CCEEEEEeCCCeEEEEeccCCceeEE-eeC----CCccEEEEEEecCCCEEEEEECC----------
Q 006220          421 SGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNANLVC-YKG----HNYPVWDVQFNPQGHYFASSSHD----------  484 (656)
Q Consensus       421 ~~~V~~l~~spd-~~~L~s~s~Dg~I~lwd~~~~~~~~~-~~~----h~~~V~~l~~sp~~~~l~sgs~D----------  484 (656)
                      ...+.+++++++ ++++++.. .+.|.+||.. ++.... ...    ....+.+++++++|+++++...+          
T Consensus        70 ~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~  147 (314)
T 1pjx_A           70 GGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             ECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred             CCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence            567899999999 66555444 4479999988 654332 221    12357899999999887777655          


Q ss_pred             -----CcEEEEECCCCceeEEecCCCCCeeEEEEc----CCCCEEEEE-ECCCcEEEEeCC-CCee-----EEEEecCC-
Q 006220          485 -----RTARIWSMDRIQPLRIMAGHLSDVDCVRWH----INCNYIATG-SSDKTVRLWDVS-SGEC-----VRIFIGHR-  547 (656)
Q Consensus       485 -----g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~----p~~~~l~tg-s~dg~V~iwd~~-~~~~-----~~~~~~h~-  547 (656)
                           +.|..|+.+ ++.... ..+......++|+    |+++.++++ +.++.|.+||.. ++..     ...+.++. 
T Consensus       148 ~~~~~~~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~  225 (314)
T 1pjx_A          148 MQEKFGSIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             TSSSCEEEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             ccCCCCeEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence                 567777765 443333 3344557889999    999776655 467899999986 4542     22233333 


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEE-EEEECCCcEEEEeCCC
Q 006220          548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL-ASGSADCTVKLWDVTT  620 (656)
Q Consensus       548 ~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~sgs~Dg~I~iWd~~~  620 (656)
                      ..+..++++++|+++++...++.|.+||..+++.+..+..+...+.+++|+++++.| ++...++.|..|++..
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            567889999999988888888999999998788777777777789999999999955 5555678999999865

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.59  E-value=6.6e-13  Score=134.68  Aligned_cols=197  Identities=12%  Similarity=0.180  Sum_probs=154.0

Q ss_pred             cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee------CCCccEEEEEEe-cCCCEEEEEEC-CCcEEEE
Q 006220          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK------GHNYPVWDVQFN-PQGHYFASSSH-DRTARIW  490 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~------~h~~~V~~l~~s-p~~~~l~sgs~-Dg~i~lw  490 (656)
                      ++-..+.+++++++++++++.+.++.|.+||.. +..+..+.      ++...+.++++. +++.++++... ++.|++|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455678999999999988888889999999987 55555553      234568899995 66766665543 8999999


Q ss_pred             ECCCCceeEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 006220          491 SMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       491 d~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      | .+++.+..+. .+...+.+++++|+++.+++...++.|.+||. .++.+..+.  ++...+..++++|+|+++++...
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            9 4566666654 34467899999999998888778899999995 466666664  34457899999999998888778


Q ss_pred             CCcEEEEeCCCCeeeEeeeCC--CccEEEEEEcCCCCEEEEEECCC-cEEEEeCC
Q 006220          568 DGTIMMWDLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADC-TVKLWDVT  619 (656)
Q Consensus       568 dg~I~iwD~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~sgs~Dg-~I~iWd~~  619 (656)
                      ++.|.+||. .++.+..+..+  ...+.+++++++|+++++...++ .|.+||..
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence            899999997 56666666543  35789999999999998888886 99999954

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.59  E-value=4.5e-12  Score=128.55  Aligned_cols=255  Identities=6%  Similarity=-0.044  Sum_probs=177.3

Q ss_pred             ceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCC
Q 006220          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGR  410 (656)
Q Consensus       331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (656)
                      .+..++.. .....+........+.+++++++|.+.++...++.|..|+...  ..                        
T Consensus        37 ~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~------------------------   89 (299)
T 2z2n_A           37 MISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG--II------------------------   89 (299)
T ss_dssp             EEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS--CE------------------------
T ss_pred             cEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC--cE------------------------
Confidence            44444444 3333333223456799999999999888877788899998642  00                        


Q ss_pred             ceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE-EeeCCCccEEEEEEecCCCEEEEEECCCcEEE
Q 006220          411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (656)
Q Consensus       411 ~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~l  489 (656)
                        .......+...+.++++.+++.++++...++.|..||. ++.... ....+...+.++++.++|..+++...++.|..
T Consensus        90 --~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  166 (299)
T 2z2n_A           90 --KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR  166 (299)
T ss_dssp             --EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             --EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence              00111123456889999999988888777889999998 454432 22334556899999999988777767789999


Q ss_pred             EECCCCceeEE-ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          490 WSMDRIQPLRI-MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       490 wd~~~~~~~~~-~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~-~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      ||. +++.... ...+...+.+++++++++..++...++.|.+||. ++..... ...+...+.+++++++|++.++...
T Consensus       167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  244 (299)
T 2z2n_A          167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG  244 (299)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC
Confidence            998 5554433 3344566889999999987776666889999999 6664432 2234467899999999997666657


Q ss_pred             CCcEEEEeCCCCeeeEee--eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          568 DGTIMMWDLASGRCVTPL--MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       568 dg~I~iwD~~~~~~~~~~--~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      ++.|..||. ++.. ..+  ..+...+.++++ +++.++++.+ .+.|..++..+.
T Consensus       245 ~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          245 ANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             TTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             CceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            789999998 4543 333  344567899999 8888777655 567777776553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.58  E-value=3.2e-13  Score=155.71  Aligned_cols=204  Identities=10%  Similarity=0.030  Sum_probs=151.6

Q ss_pred             cCccCEEEEEEccCCCEEEEEeCCC-----eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCc-------
Q 006220          419 GHSGPVYSASFSPLGDFILSSSADT-----TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT-------  486 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~~L~s~s~Dg-----~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~-------  486 (656)
                      +|...+.+++|||||++|+.++.++     +|++||+.+++.+.....+ ..+.+++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3555788999999999988766543     8999999988776533222 23678999999999999988766       


Q ss_pred             ---------EEEEECCCCce--eEEecC--CCCCeeEEEEcCCCCEEEEEEC-----CCcEEEEeCCC------Ce-eEE
Q 006220          487 ---------ARIWSMDRIQP--LRIMAG--HLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVSS------GE-CVR  541 (656)
Q Consensus       487 ---------i~lwd~~~~~~--~~~~~~--~~~~V~~v~~~p~~~~l~tgs~-----dg~V~iwd~~~------~~-~~~  541 (656)
                               |++|++.++..  ...+..  |...+..+.|+|+|++|+.++.     +..|++||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     99999988763  233333  4455789999999999988765     56899999986      53 456


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEECC----CcEEEEeCCCCe--eeEeeeCCCc--cEEEEEEcCCCCEEEEEECCCc-
Q 006220          542 IFIGHRSMILSLAMSPDGRYMASGDED----GTIMMWDLASGR--CVTPLMGHTS--CVWTLAYSCEGSLLASGSADCT-  612 (656)
Q Consensus       542 ~~~~h~~~i~~l~~sp~g~~L~s~~~d----g~I~iwD~~~~~--~~~~~~~h~~--~V~~l~~s~~~~~l~sgs~Dg~-  612 (656)
                      .+..+...+.. .|+|+|+.|+..+..    +.|.+||+.++.  ....+..|..  .+.+++|++++.+++++..|+. 
T Consensus       281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~  359 (710)
T 2xdw_A          281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (710)
T ss_dssp             EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence            66667666654 588999988776653    369999998764  2345555543  6888999988888888888885 


Q ss_pred             -EEEEeCCCCCce
Q 006220          613 -VKLWDVTTSTKV  624 (656)
Q Consensus       613 -I~iWd~~~~~~~  624 (656)
                       |.+|++.+++..
T Consensus       360 ~l~~~~~~~g~~~  372 (710)
T 2xdw_A          360 TLQLHDLATGALL  372 (710)
T ss_dssp             EEEEEETTTCCEE
T ss_pred             EEEEEECCCCCEE
Confidence             566777566543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.57  E-value=1.3e-13  Score=159.88  Aligned_cols=239  Identities=15%  Similarity=0.061  Sum_probs=167.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          353 GLNCASISQDGSLVAGGFSD-----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~d-----g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      .+.+++|||||++||.++.+     ..|++||+.+...                            .. ...+...+.++
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~----------------------------~~-~~~~~~~~~~~  214 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP----------------------------LA-DELKWVKFSGL  214 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE----------------------------EE-EEEEEEESCCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC----------------------------CC-ccCCCceeccE
Confidence            58899999999999987654     3599999875211                            11 11111223578


Q ss_pred             EEccCCCEEEEEeCCCe--------------EEEEeccCCce--eEEeeC--CCccEEEEEEecCCCEEEEEECCC----
Q 006220          428 SFSPLGDFILSSSADTT--------------IRLWSTKLNAN--LVCYKG--HNYPVWDVQFNPQGHYFASSSHDR----  485 (656)
Q Consensus       428 ~~spd~~~L~s~s~Dg~--------------I~lwd~~~~~~--~~~~~~--h~~~V~~l~~sp~~~~l~sgs~Dg----  485 (656)
                      +|+|| +.|+.++.++.              |++|++.++..  ...+..  +...+.++.|+|+|++++..+.++    
T Consensus       215 ~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  293 (741)
T 1yr2_A          215 AWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPV  293 (741)
T ss_dssp             EESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSC
T ss_pred             EEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCc
Confidence            99999 98888877654              88999877653  233333  333588999999999988887544    


Q ss_pred             -cEEEEECCCC--ceeEEecCCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCC--eeEEEEecCCCCeEEEEEc
Q 006220          486 -TARIWSMDRI--QPLRIMAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSG--ECVRIFIGHRSMILSLAMS  556 (656)
Q Consensus       486 -~i~lwd~~~~--~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d----g~V~iwd~~~~--~~~~~~~~h~~~i~~l~~s  556 (656)
                       .|++||+.++  .+...+..+...+.... +|+|..|+..+.+    +.|.+||+.++  .....+..+...+..+.++
T Consensus       294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~  372 (741)
T 1yr2_A          294 NTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA  372 (741)
T ss_dssp             CEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred             ceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence             8999999876  41445555555555543 4889988887764    45999999874  3444454555556678887


Q ss_pred             CCCCEEEEEECCCcEEEEeCC-CCeeeEeeeC-CCccEEEEEEcCCCCEEE-EEE---CCCcEEEEeCCCCCc
Q 006220          557 PDGRYMASGDEDGTIMMWDLA-SGRCVTPLMG-HTSCVWTLAYSCEGSLLA-SGS---ADCTVKLWDVTTSTK  623 (656)
Q Consensus       557 p~g~~L~s~~~dg~I~iwD~~-~~~~~~~~~~-h~~~V~~l~~s~~~~~l~-sgs---~Dg~I~iWd~~~~~~  623 (656)
                       ++.++++...|+..+||.+. .+.....+.. +.+.|..++++|+++.|+ +.+   ..++|++||+.+++.
T Consensus       373 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          373 -GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             -BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             -CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence             56788888889987777554 4666666654 357789999999987555 332   347899999987653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.57  E-value=8.6e-13  Score=137.29  Aligned_cols=239  Identities=8%  Similarity=-0.067  Sum_probs=171.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      ...+++. ++++.++...++.|.+||..+..                            ....+. .......+++++++
T Consensus        46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~----------------------------~~~~i~-~~~~p~~i~~~~~g   95 (328)
T 3dsm_A           46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFK----------------------------EVGRIT-GFTSPRYIHFLSDE   95 (328)
T ss_dssp             EEEEEEE-TTEEEEEEGGGTEEEEEETTTCC----------------------------EEEEEE-CCSSEEEEEEEETT
T ss_pred             ceEEEEE-CCEEEEEEcCCCEEEEEECcccE----------------------------EEEEcC-CCCCCcEEEEeCCC
Confidence            4556664 35555666668999999987522                            222222 33567899999988


Q ss_pred             CEEEEEeCCCeEEEEeccCCceeEEeeCCC-----ccEEEEEEecCCCEEEEEE--CCCcEEEEECCCCceeEEecCCCC
Q 006220          434 DFILSSSADTTIRLWSTKLNANLVCYKGHN-----YPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLS  506 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-----~~V~~l~~sp~~~~l~sgs--~Dg~i~lwd~~~~~~~~~~~~~~~  506 (656)
                      +.+++...++.|.+||..+++....+....     .....+++ . +..+++++  .+++|.+||+.+.+.+..+... .
T Consensus        96 ~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~  172 (328)
T 3dsm_A           96 KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-I  172 (328)
T ss_dssp             EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-S
T ss_pred             eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-C
Confidence            554555488999999999988776665433     13456777 3 44555554  4899999999998888777643 3


Q ss_pred             CeeEEEEcCCCCEEEEEECC----------CcEEEEeCCCCeeEEEEecC-CCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          507 DVDCVRWHINCNYIATGSSD----------KTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~d----------g~V~iwd~~~~~~~~~~~~h-~~~i~~l~~sp~g~~L~s~~~dg~I~iwD  575 (656)
                      ....++++|+|++++++..+          +.|.+||..+++....+... ......++|+|+++.|+++..  .|.+||
T Consensus       173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d  250 (328)
T 3dsm_A          173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMP  250 (328)
T ss_dssp             CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEE
T ss_pred             CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEE
Confidence            46788999999877766554          78999999999888776533 236889999999999988755  899999


Q ss_pred             CCCCeeeEe--eeCCCccEEEEEEcC-CCCEEEEE----ECCCcEEEEeCCCCCceeecc
Q 006220          576 LASGRCVTP--LMGHTSCVWTLAYSC-EGSLLASG----SADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       576 ~~~~~~~~~--~~~h~~~V~~l~~s~-~~~~l~sg----s~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      ..+++....  +..+.....+++++| ++.++++.    ..++.|.+||.. ++.+....
T Consensus       251 ~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          251 VEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             TTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             CCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence            988876421  112245789999999 56666666    578999999998 76665543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.57  E-value=4.9e-13  Score=136.53  Aligned_cols=205  Identities=16%  Similarity=0.061  Sum_probs=154.1

Q ss_pred             eeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEE
Q 006220          413 SYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (656)
Q Consensus       413 ~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd  491 (656)
                      ....+..+.....+++|+|+++ +++++..++.|..|+..++  ...+..+...+.+++++++|.++++...++.|.+||
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence            3344556667788999999998 7788888999999999877  666667777899999999999887777778999999


Q ss_pred             CCCCceeEEecCC----CCCeeEEEEcCCCCEEEEE----E-------------CCCcEEEEeCCCCeeEEEEecCCCCe
Q 006220          492 MDRIQPLRIMAGH----LSDVDCVRWHINCNYIATG----S-------------SDKTVRLWDVSSGECVRIFIGHRSMI  550 (656)
Q Consensus       492 ~~~~~~~~~~~~~----~~~V~~v~~~p~~~~l~tg----s-------------~dg~V~iwd~~~~~~~~~~~~h~~~i  550 (656)
                      ..+++........    ...+..++++|+|+++++.    +             ..+.|..++.. ++ +..+..+....
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~  174 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKP  174 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSE
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCC
Confidence            9777655443321    2356789999999988873    3             13456666655 44 44455666778


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEeCC-CCee---eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          551 LSLAMSPDGRYMASGDEDGTIMMWDLA-SGRC---VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       551 ~~l~~sp~g~~L~s~~~dg~I~iwD~~-~~~~---~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      ..++|+|+|+.+++.+.++.|.+||+. ++..   ...+..+.+.+.+++++++|+++++.  ++.|.+||.. ++..
T Consensus       175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~  249 (296)
T 3e5z_A          175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL  249 (296)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred             ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence            999999999988777778999999986 4544   22333345567789999999977766  8899999986 4433

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.53  E-value=6.3e-13  Score=152.87  Aligned_cols=195  Identities=8%  Similarity=-0.018  Sum_probs=142.8

Q ss_pred             cCccCEEEEEEccCCCEEE-----EEeCCCeEEEEeccCCceeEEeeCCCccE--EEEEEecCCCEEEEEECCCc-----
Q 006220          419 GHSGPVYSASFSPLGDFIL-----SSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSSHDRT-----  486 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~~L~-----s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~sgs~Dg~-----  486 (656)
                      +|...+.+++|||||++|+     +|+.+.+|++||+.+++.+.  ..+...+  ..++|+|+|+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            4666799999999999988     44455789999999887641  1121222  68999999999999998876     


Q ss_pred             --------EEEEECCCCce--eEEec--CCCCCeeEEEEcCCCCEEEEEECCC----cEEEEeCCCCeeEEEEecCCCCe
Q 006220          487 --------ARIWSMDRIQP--LRIMA--GHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGECVRIFIGHRSMI  550 (656)
Q Consensus       487 --------i~lwd~~~~~~--~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg----~V~iwd~~~~~~~~~~~~h~~~i  550 (656)
                              |++|++.++..  ...+.  .+...+.++.|+|+|++|+.++.++    .|++||..++... .+..+...+
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~  274 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAK  274 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCC
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCce
Confidence                    99999988763  23333  3556788999999999998887666    7888876666544 444555556


Q ss_pred             EEEEEcCCCCEEEEEEC----CCcEEEEeCCCCee--eEeeeCC--CccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          551 LSLAMSPDGRYMASGDE----DGTIMMWDLASGRC--VTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       551 ~~l~~sp~g~~L~s~~~----dg~I~iwD~~~~~~--~~~~~~h--~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      ....+ ++|+ ++..+.    ++.|.+||+.++..  ...+..|  ...+.+++|+ ++.+++++..|+..++|.+.
T Consensus       275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            66666 6666 554443    58899999987653  2333333  4568889998 77788999999998888765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.53  E-value=6.4e-12  Score=134.88  Aligned_cols=233  Identities=10%  Similarity=0.121  Sum_probs=166.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  432 (656)
                      ....++|+++++++++...++.|++||....                            ........ ..... ++|+++
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g----------------------------~~~~~~~~-~~~~~-ia~~~~  181 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDN----------------------------KVTTVHPG-FKGGK-PAVTKD  181 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTT----------------------------EEEEEEET-CCBCB-CEECTT
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCC----------------------------EEEEeecc-CCCCc-eeEecC
Confidence            5789999999998888888899999998641                            11111222 22223 899999


Q ss_pred             CCEEEEEeCCC--eEEEEeccCCceeEEe----eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE----ec
Q 006220          433 GDFILSSSADT--TIRLWSTKLNANLVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI----MA  502 (656)
Q Consensus       433 ~~~L~s~s~Dg--~I~lwd~~~~~~~~~~----~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~----~~  502 (656)
                      ++.|+++..++  .|.+|+...+.....+    ......+++++++|++..|+++..++.|+.||..+......    ..
T Consensus       182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~  261 (409)
T 3hrp_A          182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS  261 (409)
T ss_dssp             SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred             CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence            99998888766  7999988766554333    21445678999999555566677789999999987653332    22


Q ss_pred             CCCCCe--eEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEEecCC---------------CCeEEEEEcCCCCEEEE
Q 006220          503 GHLSDV--DCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHR---------------SMILSLAMSPDGRYMAS  564 (656)
Q Consensus       503 ~~~~~V--~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~---------------~~i~~l~~sp~g~~L~s  564 (656)
                      ++...-  ..++|+|+ +..+++...++.|+.|+....  +..+.++.               .....++++|+|+++++
T Consensus       262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva  339 (409)
T 3hrp_A          262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV  339 (409)
T ss_dssp             SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred             CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence            222222  39999995 555555566789999997643  33444442               34789999999997777


Q ss_pred             EE-CCCcEEEEeCCCCeeeEeeeCC---------------CccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          565 GD-EDGTIMMWDLASGRCVTPLMGH---------------TSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       565 ~~-~dg~I~iwD~~~~~~~~~~~~h---------------~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      -. .++.|+.||+.++.. ..+.++               -.....+++++++.++++-..++.|+.+++
T Consensus       340 d~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          340 DGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             eCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            77 789999999877764 344333               135889999999888888888889988775

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.52  E-value=6.6e-11  Score=119.94  Aligned_cols=239  Identities=9%  Similarity=0.002  Sum_probs=174.4

Q ss_pred             eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (656)
Q Consensus       349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  428 (656)
                      .....+.+++++++|++.++...++.|.+|+... ..                           ....+..+...+.+++
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~---------------------------~~~~~~~~~~~~~~i~   68 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQSG-RI---------------------------KEFEVPTPDAKVMCLI   68 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE---------------------------EEEECSSTTCCEEEEE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCCC-ce---------------------------EEEECCCCCCcceeEE
Confidence            3456789999999999888877789999998651 10                           0011112346788999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeccCCceeE-EeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ecCCCC
Q 006220          429 FSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLS  506 (656)
Q Consensus       429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~-~~~~~~  506 (656)
                      +.+++.+.++...++.|..||.. +.... ........+.++++.++|.++++...++.|..||.+ ++.... +.....
T Consensus        69 ~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~  146 (300)
T 2qc5_A           69 VSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS  146 (300)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred             ECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence            99999988877778899999988 54432 222234678899999999888877778899999987 444322 333456


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEe-
Q 006220          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP-  584 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~-  584 (656)
                      .+.++++.++++..++...++.|..||. +++..... ..+...+..++++++|.+.++....+.|.+||. +++.... 
T Consensus       147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~  224 (300)
T 2qc5_A          147 YPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD  224 (300)
T ss_dssp             CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred             CceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE
Confidence            7899999999996666666789999998 56554422 233456889999999987777766778999998 5544332 


Q ss_pred             eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       585 ~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      ...+...+.+++++++|+++++...++.|..|+..
T Consensus       225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             CCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            23345678999999999977777677899999983

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.52  E-value=2.4e-12  Score=135.86  Aligned_cols=218  Identities=11%  Similarity=0.049  Sum_probs=157.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          352 NGLNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~--dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      .....++|+|||++|+++..  ++.|.+||+....                            ....+..+. ....+.+
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~----------------------------~~~~~i~~~-~~~~v~~  158 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD----------------------------YVEDVTAAA-GCWSVIP  158 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE----------------------------EEEEEGGGT-TEEEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc----------------------------EEEEEecCC-CcceeEE
Confidence            34678999999999998864  6889999987521                            112101111 2233556


Q ss_pred             ccCC-CEEEEEeCCCeEEEEeccC-CceeEE------eeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce--eE
Q 006220          430 SPLG-DFILSSSADTTIRLWSTKL-NANLVC------YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP--LR  499 (656)
Q Consensus       430 spd~-~~L~s~s~Dg~I~lwd~~~-~~~~~~------~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~--~~  499 (656)
                      .|++ ..+++.+.||.+.+|+... ++....      +..+..++ .+.+++++..++..+.++.+.+||+.....  ..
T Consensus       159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~  237 (361)
T 2oiz_A          159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG  237 (361)
T ss_dssp             CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred             cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence            7766 5778888999999999865 443311      22223333 334567788888888899999999865432  12


Q ss_pred             EecCC----------CCCeeEEEEcCCCCEEEEEEC-----------CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC
Q 006220          500 IMAGH----------LSDVDCVRWHINCNYIATGSS-----------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD  558 (656)
Q Consensus       500 ~~~~~----------~~~V~~v~~~p~~~~l~tgs~-----------dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~  558 (656)
                      .+...          ......++|+|+++.++++..           .+.|.+||+.+++.+..+..+.  +.+++|+|+
T Consensus       238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spd  315 (361)
T 2oiz_A          238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQ  315 (361)
T ss_dssp             EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETT
T ss_pred             cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCC
Confidence            21100          011223789999888887654           3489999999999999998876  899999999


Q ss_pred             CCEEEEEECCCcEEEEeCCCC--eeeEeeeCCCccEEEEEEcCCCC
Q 006220          559 GRYMASGDEDGTIMMWDLASG--RCVTPLMGHTSCVWTLAYSCEGS  602 (656)
Q Consensus       559 g~~L~s~~~dg~I~iwD~~~~--~~~~~~~~h~~~V~~l~~s~~~~  602 (656)
                      |++|++++. +.|.+||..++  +.+.++..+......++++|+|.
T Consensus       316 g~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          316 RNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            999998887 99999999999  99988877777789999999985

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.52  E-value=1.7e-11  Score=136.71  Aligned_cols=252  Identities=12%  Similarity=0.059  Sum_probs=175.3

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      +.....+.++.|||||+++.+++.++.|.+||+....                          ......+.... ....+
T Consensus       193 i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t--------------------------~~~v~~i~~G~-~P~~i  245 (567)
T 1qks_A          193 LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE--------------------------PTTVAEIKIGS-EARSI  245 (567)
T ss_dssp             EECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS--------------------------CCEEEEEECCS-EEEEE
T ss_pred             EeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCC--------------------------CcEeEEEecCC-CCcee
Confidence            3445567899999999999999999999999985100                          11122222222 34689


Q ss_pred             EEc----cCCCEEEEEeC-CCeEEEEeccCCceeEEeeCC----------------------------------------
Q 006220          428 SFS----PLGDFILSSSA-DTTIRLWSTKLNANLVCYKGH----------------------------------------  462 (656)
Q Consensus       428 ~~s----pd~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h----------------------------------------  462 (656)
                      +|+    |+|+++++++. +++|.++|..+.+.+..+...                                        
T Consensus       246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v  325 (567)
T 1qks_A          246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  325 (567)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence            999    69998776654 589999998877666544311                                        


Q ss_pred             ---------------CccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEecC-----CCCCeeEEEEcCCCCEEE
Q 006220          463 ---------------NYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAG-----HLSDVDCVRWHINCNYIA  521 (656)
Q Consensus       463 ---------------~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~-----~~~~V~~v~~~p~~~~l~  521 (656)
                                     .....++.|+|+|++|++++ .++.|.++|+.+++.+..+..     |.+.-.. -++|++..++
T Consensus       326 d~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~  404 (567)
T 1qks_A          326 DYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVW  404 (567)
T ss_dssp             ETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEE
T ss_pred             ecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEE
Confidence                           01123567999999987776 578999999999887766543     3221112 2588755554


Q ss_pred             -EEE-CCCcEEEEeCCC-------CeeEEEEecCCCCeEEEEEcCCCCEEEEEEC-------CCcEEEEeCCCC-----e
Q 006220          522 -TGS-SDKTVRLWDVSS-------GECVRIFIGHRSMILSLAMSPDGRYMASGDE-------DGTIMMWDLASG-----R  580 (656)
Q Consensus       522 -tgs-~dg~V~iwd~~~-------~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~-------dg~I~iwD~~~~-----~  580 (656)
                       ++. .+++|.++|..+       .+.++.+......-..+..+|+++++.+...       .++|.++|+.+.     .
T Consensus       405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~  484 (567)
T 1qks_A          405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD  484 (567)
T ss_dssp             EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred             EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence             443 468999999987       6778888765444455789999999998763       459999999876     2


Q ss_pred             -eeEeee--------CCCccEEEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCCceeec
Q 006220          581 -CVTPLM--------GHTSCVWTLAYSCEGSLLASGS-----ADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       581 -~~~~~~--------~h~~~V~~l~~s~~~~~l~sgs-----~Dg~I~iWd~~~~~~~~~~  627 (656)
                       .+..+.        .....+..+.|+++|+.+..+.     .++.|.|+|..+.+.....
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i  545 (567)
T 1qks_A          485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI  545 (567)
T ss_dssp             CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred             CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence             112221        1235789999999999876653     2799999999998765444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.50  E-value=1.3e-12  Score=132.53  Aligned_cols=191  Identities=11%  Similarity=0.085  Sum_probs=159.7

Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeCCC-ccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC-CCCee
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH-LSDVD  509 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~-~~~V~  509 (656)
                      .++.|++++.++.|.+||..+++.+..+..+. ..+.++.++|+|++++  +.++.|+.||. +++.+..+..+ ...+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            46789999999999999999999999988766 4788999999999888  45788999999 78888888764 34688


Q ss_pred             EEEEcCCCCEEEEEEC-CCcEEEEeCCCCeeEEEEec------CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220          510 CVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFIG------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       510 ~v~~~p~~~~l~tgs~-dg~V~iwd~~~~~~~~~~~~------h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      ++.+.++|+++++.+. ++.|..+|. +|+.+..+..      +......+++.++|+++++...++.|..||.. |+.+
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence            8999999999999887 788888885 7888777652      11234566789999999999999999999987 9999


Q ss_pred             EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       583 ~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      .++..+ ..+.++.+.++|+++++++.++.|..+|..+++.+....
T Consensus       159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            888765 345677888999999999988899999999898877664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.49  E-value=5.5e-13  Score=140.70  Aligned_cols=172  Identities=11%  Similarity=0.023  Sum_probs=140.2

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCc-----------eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEE
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNA-----------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~-----------~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd  491 (656)
                      +++.+++++...++++|+.++ +.+|++....           ..... .+.. |..++|  ++.+++++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            688999999999999999985 7779876433           11223 3556 999999  88999998 889999999


Q ss_pred             CCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcE
Q 006220          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (656)
Q Consensus       492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I  571 (656)
                      +++.........|...+.++.+.+.  .+++++.||.|.+||+.++....    +...|+|++|||+|  ++.|..||.+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i  184 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence            9887776667777788888877655  38889999999999999887754    34589999999999  7889999999


Q ss_pred             EEEeCCCCee--eEee------e---CCCccEEEEEEcCCCCEEEEEE
Q 006220          572 MMWDLASGRC--VTPL------M---GHTSCVWTLAYSCEGSLLASGS  608 (656)
Q Consensus       572 ~iwD~~~~~~--~~~~------~---~h~~~V~~l~~s~~~~~l~sgs  608 (656)
                      ++|+...+..  ..++      .   +|...|.++.|.+++.++++-+
T Consensus       185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9999877775  4455      2   4778999999999999888754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.49  E-value=1.8e-11  Score=125.22  Aligned_cols=225  Identities=14%  Similarity=0.178  Sum_probs=158.0

Q ss_pred             CeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       353 ~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ---+..|+++ +.++++...++.|..|+..+..                             .. ...+...+.++++++
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~-----------------------------~~-~~~~~~~~~~i~~~~   63 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-----------------------------VQ-RVTMDAPVSSVALRQ   63 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-----------------------------EE-EEECSSCEEEEEEBT
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCc-----------------------------EE-EEeCCCceEEEEECC
Confidence            3568899995 5567777778999999976411                             11 112346789999999


Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeC----CCccEEEEEEecCCCEEEEEECC---------CcEEEEECCCCcee
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSHD---------RTARIWSMDRIQPL  498 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~l~~sp~~~~l~sgs~D---------g~i~lwd~~~~~~~  498 (656)
                      +++++++ . ++.|.+||..+++.......    ....+.+++++|+|+++++....         ....+|.++.....
T Consensus        64 dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~  141 (297)
T 3g4e_A           64 SGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV  141 (297)
T ss_dssp             TSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE
T ss_pred             CCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE
Confidence            9995554 4 56799999987765333222    12457899999999976654322         33455555432233


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEE-EECCCcEEEEeC--CCCeeE--EEE---ecCCCCeEEEEEcCCCCEEEEEECCCc
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLWDV--SSGECV--RIF---IGHRSMILSLAMSPDGRYMASGDEDGT  570 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~t-gs~dg~V~iwd~--~~~~~~--~~~---~~h~~~i~~l~~sp~g~~L~s~~~dg~  570 (656)
                      ..+..+....+.++|+|+++.|+. .+.++.|.+||+  .++...  +.+   ..+.+....++++++|++.++....+.
T Consensus       142 ~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~  221 (297)
T 3g4e_A          142 KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR  221 (297)
T ss_dssp             EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE
T ss_pred             EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE
Confidence            333334456789999999987755 455789999987  455432  222   233456789999999998888888889


Q ss_pred             EEEEeCCCCeeeEeeeCCCccEEEEEEc-CCCCEEEEEEC
Q 006220          571 IMMWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGSA  609 (656)
Q Consensus       571 I~iwD~~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~sgs~  609 (656)
                      |..||..+++.+..+..+...+++++|. |+++.|..++.
T Consensus       222 v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          222 VIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            9999998899999888887789999998 88776655553

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.48  E-value=9e-13  Score=139.09  Aligned_cols=182  Identities=14%  Similarity=0.085  Sum_probs=140.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  432 (656)
                      .++.+++++...++++|+.++ ++||++..........   ..             . ... .....+.+ |+.++|  +
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~---~~-------------~-~~~-~~~~~lp~-V~~l~f--d   96 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD---ST-------------P-LTF-KWEKEIPD-VIFVCF--H   96 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS---SC-------------C-CCC-SEEEECTT-EEEEEE--E
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccc---cc-------------c-ccc-eEEeeCCC-eeEEEE--C
Confidence            588999999999999998875 5569986522100000   00             0 011 11234666 999999  8


Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEE
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~  512 (656)
                      +.+|+++ .++.|++||+.+.........|..++.++.+.+.  .+++++.||.+.+||+.++....    +...|+|++
T Consensus        97 ~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~  169 (388)
T 1xip_A           97 GDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFD  169 (388)
T ss_dssp             TTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEE
T ss_pred             CCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEE
Confidence            9999998 8899999999887776667778888988887754  39999999999999999777653    346899999


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCee--EEEE------e---cCCCCeEEEEEcCCCCEEEEE
Q 006220          513 WHINCNYIATGSSDKTVRLWDVSSGEC--VRIF------I---GHRSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       513 ~~p~~~~l~tgs~dg~V~iwd~~~~~~--~~~~------~---~h~~~i~~l~~sp~g~~L~s~  565 (656)
                      |+|+|  ++.|..||++++|+...+.+  .+++      .   +|...|.+|.|.+++.++++=
T Consensus       170 WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          170 VTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             ECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            99999  78899999999999888776  5556      2   377889999999999998873

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.48  E-value=8.2e-11  Score=119.24  Aligned_cols=235  Identities=6%  Similarity=-0.030  Sum_probs=165.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      ....+.+++++++|++.++...++.|..|+... ..                           ...........+.++++
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g-~~---------------------------~~~~~~~~~~~~~~i~~  111 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKKG-GF---------------------------TEYPLPQPDSGPYGITE  111 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE---------------------------EEEECSSTTCCEEEEEE
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCCC-Ce---------------------------EEecCCCCCCCCccceE
Confidence            346799999999999888776688899998652 10                           00111123356889999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeE-EeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ecCCCCC
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLSD  507 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~-~~~~~~~  507 (656)
                      .++++++++...++.|..|+.. +.... ........+.++++.++|+.+++...++.|..|+. +++.... ...+...
T Consensus       112 ~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~  189 (300)
T 2qc5_A          112 GLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAA  189 (300)
T ss_dssp             CSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred             CCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCC
Confidence            9999988887778899999987 54432 22334557889999999997666666789999998 4444332 2234567


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE-ee
Q 006220          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT-PL  585 (656)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~-~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~-~~  585 (656)
                      +.+++++++++..++....+.|.+||. ++..... ...+...+.+++++++|++.++...++.|..||. +++... .+
T Consensus       190 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~  267 (300)
T 2qc5_A          190 PVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQL  267 (300)
T ss_dssp             EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEEC
T ss_pred             cceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEEC
Confidence            889999999987777666778999998 5554443 2234567899999999987666666789999998 454332 22


Q ss_pred             eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       586 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      ......+.+++++++|.++++.. . .|..+|.
T Consensus       268 ~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          268 QTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             CSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            33345688999999998766655 4 6666664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.47  E-value=8.9e-12  Score=124.80  Aligned_cols=199  Identities=9%  Similarity=0.051  Sum_probs=144.7

Q ss_pred             CEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220          423 PVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       423 ~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      ...++++++++++++ +.+.++.|.+|+..+.........+...+.+++++++|..+++.. ++.|.+||..........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            678999999999777 557789999999765543322223335678999999998666655 889999998765443222


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                      ......+.+++++++|+.+++...++.|.+|+..+.............+.+++++++|+++++...++.|.+||......
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            23346789999999999777777788999998765544432223334678899999999777777788999999877655


Q ss_pred             eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       582 ~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ......+...+.+++++++|.++++...++.|.+|+.....
T Consensus       184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            44333343678999999999888888788999999986643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.45  E-value=4e-11  Score=124.62  Aligned_cols=195  Identities=9%  Similarity=-0.055  Sum_probs=148.3

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      ....++.+. .++.+++...+++|.+||..+++.+..+.. ......+++++++..+++...++.|.+||..+.+....+
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            345667774 345566666789999999999998888864 456789999999854444448999999999998877766


Q ss_pred             cCCC-----CCeeEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC------
Q 006220          502 AGHL-----SDVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED------  568 (656)
Q Consensus       502 ~~~~-----~~V~~v~~~p~~~~l~tgs--~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d------  568 (656)
                      ....     .....+++  ++..+++++  .++.|.+||..+++.+..+... .....++++|+|++++++..+      
T Consensus       122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~  198 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPY  198 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred             EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCcc
Confidence            5332     14567777  345555554  4889999999999988877653 345688999999977776654      


Q ss_pred             ----CcEEEEeCCCCeeeEeeeCC-CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          569 ----GTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       569 ----g~I~iwD~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                          +.|.+||..+++....+... ......++|+|+++.|.++..  .|.+||..+++.
T Consensus       199 ~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          199 GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred             ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence                78999999999887776543 236789999999998887755  899999987664

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.44  E-value=1.2e-11  Score=143.21  Aligned_cols=196  Identities=14%  Similarity=0.074  Sum_probs=140.3

Q ss_pred             CccCEEEEEEccCCCEEEEEeCC-----CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCc--------
Q 006220          420 HSGPVYSASFSPLGDFILSSSAD-----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT--------  486 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~D-----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~--------  486 (656)
                      |...+.+++|||||++|+.++.+     .+|++||+.+++.+.. ..+...+..++|+|+ +.|+.++.++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44578899999999998876654     4699999999887543 112222357899999 99988887654        


Q ss_pred             ------EEEEECCCCce--eEEecC--CCCCeeEEEEcCCCCEEEEEECCC-----cEEEEeCCCC--eeEEEEecCCCC
Q 006220          487 ------ARIWSMDRIQP--LRIMAG--HLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSG--ECVRIFIGHRSM  549 (656)
Q Consensus       487 ------i~lwd~~~~~~--~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg-----~V~iwd~~~~--~~~~~~~~h~~~  549 (656)
                            |++|++.++..  ...+..  +...+..+.|+|+|++|+.++.++     .|++||+.++  .+...+..+...
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                  89999977652  333433  333588999999999998877554     8999999887  424555556555


Q ss_pred             eEEEEEcCCCCEEEEEECC----CcEEEEeCCCC--eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          550 ILSLAMSPDGRYMASGDED----GTIMMWDLASG--RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       550 i~~l~~sp~g~~L~s~~~d----g~I~iwD~~~~--~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      +... ++|+|+.|+..+.+    +.|.+||+.++  .....+..+...+.+++|+ ++.++++...|+..+||.+.
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            5555 35899988887754    45999999874  3333344455667788887 66788888899988877665

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.43  E-value=1.1e-10  Score=121.30  Aligned_cols=222  Identities=10%  Similarity=-0.016  Sum_probs=153.4

Q ss_pred             CeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       353 ~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      -..+.+|+|+ +.+++++..++.|.+|+..+.                             ....+ .+...+.++.|++
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-----------------------------~~~~~-~~~~~v~~i~~~~   99 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASG-----------------------------RKTVH-ALPFMGSALAKIS   99 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT-----------------------------EEEEE-ECSSCEEEEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC-----------------------------cEEEE-ECCCcceEEEEeC
Confidence            3578899997 556667777889999997641                             11111 1245799999999


Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeC----CCccEEEEEEecCCCEEEEEEC------CCcEEEEECCCCceeEEe
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~l~~sp~~~~l~sgs~------Dg~i~lwd~~~~~~~~~~  501 (656)
                      ++++++++ .+ .|.+||..+++.......    ....+.+++++|+|+++++...      .+.|..++  +++. ..+
T Consensus       100 dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~  174 (326)
T 2ghs_A          100 DSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKL  174 (326)
T ss_dssp             TTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEE
T ss_pred             CCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEe
Confidence            99877654 44 599999987765432221    1245889999999987665542      24555555  4433 333


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCC--CC-ee-----EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220          502 AGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVS--SG-EC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~--~~-~~-----~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~  572 (656)
                      ..+......++|+|+++.++.+ +.++.|.+||+.  ++ ..     ...+.........++++++|.+.++...++.|.
T Consensus       175 ~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~  254 (326)
T 2ghs_A          175 FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD  254 (326)
T ss_dssp             EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEE
Confidence            3333457889999999877655 456899999986  55 32     222222345678899999998877777778999


Q ss_pred             EEeCCCCeeeEeeeCCCccEEEEEEc-CCCCEEEEEECC
Q 006220          573 MWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGSAD  610 (656)
Q Consensus       573 iwD~~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~sgs~D  610 (656)
                      +||. +++.+..+..+...+++++|+ +++..|+.++..
T Consensus       255 ~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          255 RYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            9998 677777777777789999998 888776555443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.43  E-value=3.6e-11  Score=123.41  Aligned_cols=230  Identities=8%  Similarity=0.069  Sum_probs=159.9

Q ss_pred             EeeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          347 FINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      +...........|+++|+ +++++..++.|..|+...                              ....+..+...+.
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g------------------------------~~~~~~~~~~~~~   89 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG------------------------------TVDVLLDATAFTN   89 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS------------------------------CEEEEEESCSCEE
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC------------------------------CEEEEeCCCCccc
Confidence            444455678899999998 667777889999998632                              1123334567789


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee---C-CCccEEEEEEecCCCEEEE----EEC-------------C
Q 006220          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---G-HNYPVWDVQFNPQGHYFAS----SSH-------------D  484 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~-h~~~V~~l~~sp~~~~l~s----gs~-------------D  484 (656)
                      +++++++|+++++...++.|.+|+.+ +.......   + ....+.+++++|+|.++++    |..             .
T Consensus        90 gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~  168 (305)
T 3dr2_A           90 GNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH  168 (305)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred             eeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence            99999999977666666889999986 44322211   1 1134678999999998886    332             2


Q ss_pred             CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC------CcEEEEeCCCCee--EEEEe-cCCCCeEEEEE
Q 006220          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGEC--VRIFI-GHRSMILSLAM  555 (656)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d------g~V~iwd~~~~~~--~~~~~-~h~~~i~~l~~  555 (656)
                      +.|+.||..+++.....  .......++|+|+++.|+++...      +.|++||+..+..  .+.+. ...+....+++
T Consensus       169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~  246 (305)
T 3dr2_A          169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCV  246 (305)
T ss_dssp             EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEE
T ss_pred             CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEE
Confidence            46777777666554433  44567889999999988887665      7899999876542  11221 12344567899


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcE
Q 006220          556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV  613 (656)
Q Consensus       556 sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I  613 (656)
                      +++|++.++ +.+ .|.+||. .++.+..+..+. .+.+++|+++++.|..++.++..
T Consensus       247 d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~  300 (305)
T 3dr2_A          247 DRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLW  300 (305)
T ss_dssp             CTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEE
T ss_pred             CCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEE
Confidence            999995444 444 4999997 677777776555 58899999999888888876433

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.42  E-value=2.5e-10  Score=127.28  Aligned_cols=229  Identities=11%  Similarity=0.073  Sum_probs=165.8

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe
Q 006220          361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS  440 (656)
Q Consensus       361 ~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s  440 (656)
                      +.+.++++...++.|.+||..+..                            ....+. ....+.++.|+|||+++++++
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~----------------------------v~~~i~-~g~~p~~v~~SpDGr~lyv~~  215 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYE----------------------------IKTVLD-TGYAVHISRLSASGRYLFVIG  215 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCC----------------------------EEEEEE-CSSCEEEEEECTTSCEEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCe----------------------------EEEEEe-CCCCccceEECCCCCEEEEEc
Confidence            445566777789999999987521                            222222 223566899999999999999


Q ss_pred             CCCeEEEEecc--CCceeEEeeCCCccEEEEEEe----cCCCEEEEEE-CCCcEEEEECCCCceeEEecCC---------
Q 006220          441 ADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFN----PQGHYFASSS-HDRTARIWSMDRIQPLRIMAGH---------  504 (656)
Q Consensus       441 ~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~l~~s----p~~~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~~---------  504 (656)
                      .|+.|.+||+.  +++.+..+..... ...++|+    |+|+++++++ .++++.++|..+.+++..+...         
T Consensus       216 ~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~  294 (567)
T 1qks_A          216 RDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY  294 (567)
T ss_dssp             TTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred             CCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc
Confidence            99999999995  7777777765443 5689999    6999988776 5599999999999988776522         


Q ss_pred             --CCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCC
Q 006220          505 --LSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG  579 (656)
Q Consensus       505 --~~~V~~v~~~p~~~~l-~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~  579 (656)
                        ...+..+..++++..+ +....+|.|.++|..+....... .........+.|+|+|++++++. .++.|.++|+.++
T Consensus       295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence              1257788888876554 44556799999999876433221 22344677899999999887765 6789999999999


Q ss_pred             eeeEeeeC-----CCccEEEEEEcCCCC-EEEEEE-CCCcEEEEeCCC
Q 006220          580 RCVTPLMG-----HTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTT  620 (656)
Q Consensus       580 ~~~~~~~~-----h~~~V~~l~~s~~~~-~l~sgs-~Dg~I~iWd~~~  620 (656)
                      +.+..+..     |.+.-..+ ++|++. .++++. .+++|.++|..+
T Consensus       375 kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          375 KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            88776653     43222222 578744 445553 568999999987

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.42  E-value=3.3e-10  Score=119.87  Aligned_cols=243  Identities=9%  Similarity=-0.078  Sum_probs=163.1

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       356 ~l~fs~dg~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .++|||||++|.++.          .++.|.+||..+..........               . ..   ...  +.....
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~---------------~-~~---~~~--~g~~p~  128 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP---------------D-AP---RFD--VGPYSW  128 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC---------------C-cc---ccc--cCCCcc
Confidence            999999999999885          3678999998653221110000               0 00   000  012345


Q ss_pred             EEEEccCCCEEEEEeC--CCeEEEEeccCCceeEE-eeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEe
Q 006220          426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~--Dg~I~lwd~~~~~~~~~-~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      .+.|+|||++|+++..  +++|.++| .+++.+.. +....    ++.+.|++ ..+++.+.||.+.+||. +++.....
T Consensus       129 ~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~  202 (373)
T 2mad_H          129 MNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG  202 (373)
T ss_pred             ceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE
Confidence            7899999999998874  57899999 98887766 54322    24455554 45677778999999999 77666332


Q ss_pred             c-----CCCCC-eeEEEEcCCCCEEEEEECCCcEEEEeCCCCe--eEEEEec----------CCCCeEEEEEcCCCCEEE
Q 006220          502 A-----GHLSD-VDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIG----------HRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       502 ~-----~~~~~-V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~--~~~~~~~----------h~~~i~~l~~sp~g~~L~  563 (656)
                      .     ....+ .....+.+++..++..+..+.+.+.|+.++.  .+..+..          .......+.++|+++.++
T Consensus       203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence            1     11111 1234556666555555578899999997653  2222211          112244578999998887


Q ss_pred             EEEC----------CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCCceee
Q 006220          564 SGDE----------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       564 s~~~----------dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs-~Dg~I~iWd~~~~~~~~~  626 (656)
                      ++..          ++.|.++|+.+++.+.++... ...++++|+|||+ .++++. .++.|.+||+.+.+....
T Consensus       283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            7653          357999999999999888533 3578999999999 777777 589999999999887654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.41  E-value=1.2e-11  Score=142.08  Aligned_cols=238  Identities=13%  Similarity=0.106  Sum_probs=161.3

Q ss_pred             CCeEEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          352 NGLNCASISQDGSLVAGGF-----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~-----~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      ..+..++|||||++||.+.     ....|+|||+.+....                          . ..+.+  ....+
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~--------------------------~-~~~~~--~k~~~  179 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL--------------------------E-TPLKD--VKFSG  179 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE--------------------------E-EEEEE--EESCC
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC--------------------------c-cccCC--ceecc
Confidence            3588899999999999643     2356999998752210                          0 01111  11246


Q ss_pred             EEEccCCCEEEEEeCCCe-------------EEEEeccCCce--eEEeeC---CCccEEEEEEecCCCEEEEEEC----C
Q 006220          427 ASFSPLGDFILSSSADTT-------------IRLWSTKLNAN--LVCYKG---HNYPVWDVQFNPQGHYFASSSH----D  484 (656)
Q Consensus       427 l~~spd~~~L~s~s~Dg~-------------I~lwd~~~~~~--~~~~~~---h~~~V~~l~~sp~~~~l~sgs~----D  484 (656)
                      ++|+ |++.|+.++.+..             |++|++.+...  ...+..   |...+.++.|+|+|++++....    +
T Consensus       180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~  258 (693)
T 3iuj_A          180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSG  258 (693)
T ss_dssp             CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSC
T ss_pred             EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCC
Confidence            7899 9999998887743             99999887653  333332   3345778999999998865542    3


Q ss_pred             CcEEEEECCCCc-eeEEecCCCCCeeEEEEcCCCCEEEEEE-CC---CcEEEEeCCCCee--EEEEecCCCCeEEEEEcC
Q 006220          485 RTARIWSMDRIQ-PLRIMAGHLSDVDCVRWHINCNYIATGS-SD---KTVRLWDVSSGEC--VRIFIGHRSMILSLAMSP  557 (656)
Q Consensus       485 g~i~lwd~~~~~-~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~d---g~V~iwd~~~~~~--~~~~~~h~~~i~~l~~sp  557 (656)
                      ..+++||+.++. ....+..+....... |++++..|+..+ .+   +.|..||+.++..  .+.+..|...+.  .|++
T Consensus       259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~  335 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS  335 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE
T ss_pred             cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE
Confidence            589999998763 445555565555554 566666665544 33   5799999988765  345666766665  8999


Q ss_pred             CCCEEEEEECCC---cEEEEeCCCCeeeEeee-CCCccEEEEEEcCCCCEEEEEECC----CcEEEEeCCCCCc
Q 006220          558 DGRYMASGDEDG---TIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSAD----CTVKLWDVTTSTK  623 (656)
Q Consensus       558 ~g~~L~s~~~dg---~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~sgs~D----g~I~iWd~~~~~~  623 (656)
                      ++++|+....++   .|.+||+..+ ....+. ...+.+..+.+++++..++....+    ++|..||+.+++.
T Consensus       336 ~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          336 GSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             ETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             ECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            999887765444   6899998744 444443 344677888888888766655444    7899999987654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.35  E-value=3e-10  Score=116.21  Aligned_cols=202  Identities=10%  Similarity=0.101  Sum_probs=143.4

Q ss_pred             ecCccCEEEEEEccCCCEEEE-------EeCCCeEEEEeccCCceeEEee----CCCccEEEEEEecC-CCEEEEEECCC
Q 006220          418 QGHSGPVYSASFSPLGDFILS-------SSADTTIRLWSTKLNANLVCYK----GHNYPVWDVQFNPQ-GHYFASSSHDR  485 (656)
Q Consensus       418 ~~h~~~V~~l~~spd~~~L~s-------~s~Dg~I~lwd~~~~~~~~~~~----~h~~~V~~l~~sp~-~~~l~sgs~Dg  485 (656)
                      ...-....+++|++++.++++       ++.++.|.+||..+++......    ++...+.+++++++ |.++ .++..+
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~-v~~~~~   92 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRL   92 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEE-EEECCC
Confidence            334455678999999988777       6778999999988776543222    24457889999999 6544 444455


Q ss_pred             cEEEEECCCCceeEE-ecC----CCCCeeEEEEcCCCCEEEEEECC---------------CcEEEEeCCCCeeEEEEec
Q 006220          486 TARIWSMDRIQPLRI-MAG----HLSDVDCVRWHINCNYIATGSSD---------------KTVRLWDVSSGECVRIFIG  545 (656)
Q Consensus       486 ~i~lwd~~~~~~~~~-~~~----~~~~V~~v~~~p~~~~l~tgs~d---------------g~V~iwd~~~~~~~~~~~~  545 (656)
                      .|.+||.+ ++.... ...    ....+.+++++++|+++++...+               +.|..||.. ++..... .
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~  169 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-T  169 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-E
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-c
Confidence            79999988 554333 221    12458899999999887776655               567788865 5544333 3


Q ss_pred             CCCCeEEEEEc----CCCCEEEEE-ECCCcEEEEeCC-CCe-----eeEeeeCCC-ccEEEEEEcCCCCEEEEEECCCcE
Q 006220          546 HRSMILSLAMS----PDGRYMASG-DEDGTIMMWDLA-SGR-----CVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTV  613 (656)
Q Consensus       546 h~~~i~~l~~s----p~g~~L~s~-~~dg~I~iwD~~-~~~-----~~~~~~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I  613 (656)
                      +......++|+    |+|+.|+.+ ..++.|.+||+. .++     ....+..+. ..+..++++++|.++++...++.|
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i  249 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence            34457889999    999766555 467899999986 454     233344444 568899999999999988889999


Q ss_pred             EEEeCCCCCc
Q 006220          614 KLWDVTTSTK  623 (656)
Q Consensus       614 ~iWd~~~~~~  623 (656)
                      .+||..+++.
T Consensus       250 ~~~d~~~g~~  259 (314)
T 1pjx_A          250 EVFGPDGGQP  259 (314)
T ss_dssp             EEECTTCBSC
T ss_pred             EEEcCCCCcE
Confidence            9999876554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.33  E-value=2.1e-10  Score=120.58  Aligned_cols=249  Identities=12%  Similarity=0.047  Sum_probs=165.0

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       356 ~l~fs~dg~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+++||||+++.++.          .++.|.+||..+...........               +.    +  ........
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~---------------g~----r--~~~g~~P~  140 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD---------------AP----R--FLVGTYPW  140 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT---------------CC----C--CCBSCCGG
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCC---------------cc----c--cccCCCCc
Confidence            399999999887765          36789999987632211100000               00    0  00011344


Q ss_pred             EEEEccCCCEEEEEeC--CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEec
Q 006220          426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMA  502 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~-~~~~~~~~  502 (656)
                      .+.|+|||++++++..  +++|.++|+.+++.+..+....  + ...+....+.|++.+.||++.+.++.. ++......
T Consensus       141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~  217 (386)
T 3sjl_D          141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT  217 (386)
T ss_dssp             GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred             eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec
Confidence            6899999999888764  6899999999999888876432  1 223444556788888999999999876 44432221


Q ss_pred             CCC----CCe-eEEEEc-CCCCEEEEEECCCcEEEEeCCCCee--EEEEe---c-------CCCCeEEEEEcCCCCEEEE
Q 006220          503 GHL----SDV-DCVRWH-INCNYIATGSSDKTVRLWDVSSGEC--VRIFI---G-------HRSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       503 ~~~----~~V-~~v~~~-p~~~~l~tgs~dg~V~iwd~~~~~~--~~~~~---~-------h~~~i~~l~~sp~g~~L~s  564 (656)
                      .+.    ..+ ....|. ++|++++ .+.+|.|++.|..++..  +..+.   .       ..+....++++++++.++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV  296 (386)
T 3sjl_D          218 EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL  296 (386)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEE
Confidence            111    112 124554 5675554 55689999999976642  22221   0       1123345778999988877


Q ss_pred             EEC----------CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC-EEEEE-ECCCcEEEEeCCCCCceeecccc
Q 006220          565 GDE----------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASG-SADCTVKLWDVTTSTKVLKTEEK  630 (656)
Q Consensus       565 ~~~----------dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~sg-s~Dg~I~iWd~~~~~~~~~~~~~  630 (656)
                      ...          .+.|.+.|+.+++.+.++..- ..++++.+++|++ +|+++ ..++.|.++|..+++.+......
T Consensus       297 ~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          297 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             EeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence            643          257999999999999888632 3678999999996 66665 45899999999998877665443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.30  E-value=3.3e-10  Score=118.35  Aligned_cols=243  Identities=9%  Similarity=-0.001  Sum_probs=161.7

Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          352 NGLNCASISQDGSLVAGGF--SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~--~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      .....++++++|+++++..  .++.++||.+.. +.....   +.              ..    ....+|-..+.++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~~---p~--------------~~----~~~~~~~~~p~gv~~   74 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIPF---PP--------------QS----GNAIITFDTVLGIKS   74 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEES---CC--------------CC----SSCCCCCSCEEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeecC---CC--------------cc----cCcccceeEeeEEEE
Confidence            6789999999999988863  234366776652 111100   00              00    011246678999999


Q ss_pred             ccCCCEEEEEeC-----CCeEEEEeccCCceeEEeeCC------CccEEEEEEecCCCEE-EEEE---CCCcEEEEECCC
Q 006220          430 SPLGDFILSSSA-----DTTIRLWSTKLNANLVCYKGH------NYPVWDVQFNPQGHYF-ASSS---HDRTARIWSMDR  494 (656)
Q Consensus       430 spd~~~L~s~s~-----Dg~I~lwd~~~~~~~~~~~~h------~~~V~~l~~sp~~~~l-~sgs---~Dg~i~lwd~~~  494 (656)
                      +++++++++-+.     ++.|.+||+.+++.+..+...      ...+.++++++++..+ ++.+   .++.|.+||..+
T Consensus        75 d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~  154 (343)
T 2qe8_A           75 DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT  154 (343)
T ss_dssp             CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred             cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence            999886665443     578999999988866665432      2346899999865444 5544   578999999988


Q ss_pred             CceeEEecCCC-----------------------------CCeeEEEEcCCCCEEEEEECCC-cEEEEeCC---CCe---
Q 006220          495 IQPLRIMAGHL-----------------------------SDVDCVRWHINCNYIATGSSDK-TVRLWDVS---SGE---  538 (656)
Q Consensus       495 ~~~~~~~~~~~-----------------------------~~V~~v~~~p~~~~l~tgs~dg-~V~iwd~~---~~~---  538 (656)
                      ++..+.+.+|.                             ..+..++|+|+++.|+++..++ .+..++..   .+.   
T Consensus       155 g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~  234 (343)
T 2qe8_A          155 GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTD  234 (343)
T ss_dssp             CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCH
T ss_pred             CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCCh
Confidence            77766654421                             1357899999999998887766 44444421   111   


Q ss_pred             --eEE--EEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcE
Q 006220          539 --CVR--IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTV  613 (656)
Q Consensus       539 --~~~--~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I  613 (656)
                        ...  ...++.+....++++++|.++++...++.|.+||..+++....... +-..+.+++|++++.++++.+..+.+
T Consensus       235 ~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          235 AELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             HHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             hhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence              000  1123445567799999999999988899999999856764333322 23468999999999888887755544


Q ss_pred             EEE
Q 006220          614 KLW  616 (656)
Q Consensus       614 ~iW  616 (656)
                      .+|
T Consensus       315 ~~f  317 (343)
T 2qe8_A          315 APL  317 (343)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            333

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.29  E-value=2e-09  Score=109.87  Aligned_cols=202  Identities=12%  Similarity=0.116  Sum_probs=138.4

Q ss_pred             CccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220          420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       420 h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                      +..-.-+..|++++. ++++...++.|..||..++.. ..+. ....+.+++++++|+++++ . ++.|.+||.++++..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence            334456888999655 566667789999999987654 3333 4567899999999995544 4 568999999877644


Q ss_pred             EEecC----CCCCeeEEEEcCCCCEEEEEECC---------CcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220          499 RIMAG----HLSDVDCVRWHINCNYIATGSSD---------KTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       499 ~~~~~----~~~~V~~v~~~p~~~~l~tgs~d---------g~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~g~~L~s  564 (656)
                      .....    ....+..++++|+|+++++....         ..-.+|.+.. ++... +..+......++|+|+|+.|+.
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEE
Confidence            33322    12347889999999966654322         2334554432 33333 3334455688999999987755


Q ss_pred             -EECCCcEEEEeC--CCCee-----eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220          565 -GDEDGTIMMWDL--ASGRC-----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       565 -~~~dg~I~iwD~--~~~~~-----~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                       .+.++.|.+||+  .++..     +..+..+.+.+..++++++|++.++....+.|.+||..+++....
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~  235 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT  235 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred             ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence             455789999997  45543     222333345678999999999888888888999999987765443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=5e-10  Score=120.09  Aligned_cols=198  Identities=10%  Similarity=0.034  Sum_probs=144.8

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC--cEEEEECCCCceeE
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLR  499 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg--~i~lwd~~~~~~~~  499 (656)
                      ....+++|+++++++++...++.|++||..++........... .. ++|++++..++++..++  .|.+|+........
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            4678999999999888887889999999987766555544333 33 99999999999888766  78899887665544


Q ss_pred             Ee----cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEE----EecCCCCe--EEEEEcCC-CCEEEEEECC
Q 006220          500 IM----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI----FIGHRSMI--LSLAMSPD-GRYMASGDED  568 (656)
Q Consensus       500 ~~----~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~----~~~h~~~i--~~l~~sp~-g~~L~s~~~d  568 (656)
                      .+    ......+.+++++|++..|+++..++.|+.||..++.....    ..++...-  ..++|+|+ +.++++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            44    32456788999999655666677788999999987764332    22222222  38999995 5566666678


Q ss_pred             CcEEEEeCCCCeeeEeeeCCC---------------ccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCCc
Q 006220          569 GTIMMWDLASGRCVTPLMGHT---------------SCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTK  623 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~~h~---------------~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~~~~  623 (656)
                      +.|+.||....  +..+.++.               .....++++++|+++++-+ .++.|+.|++.++..
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            89999997543  33333332               3478999999999888877 889999999876653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.25  E-value=1.4e-09  Score=116.23  Aligned_cols=201  Identities=8%  Similarity=0.011  Sum_probs=136.6

Q ss_pred             EEEEccCCCEEEEEe----------CCCeEEEEeccCCceeEEeeCC-------CccEEEEEEecCCCEEEEEEC--CCc
Q 006220          426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT  486 (656)
Q Consensus       426 ~l~~spd~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~sgs~--Dg~  486 (656)
                      .+.++||+++++++.          .++.|.++|..+++.+..+.-.       ......+.|+|+|++++++..  +++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            899999999888776          3678999999999888776521       123457899999999999874  578


Q ss_pred             EEEEECCCCceeEEecCCCC-------CeeEEEEcCCCCEEE-------------------------------------E
Q 006220          487 ARIWSMDRIQPLRIMAGHLS-------DVDCVRWHINCNYIA-------------------------------------T  522 (656)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~-------~V~~v~~~p~~~~l~-------------------------------------t  522 (656)
                      |.+.|+.+.+.+..+.....       .-..+.++++|.+++                                     .
T Consensus       202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~  281 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW  281 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred             EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence            99999999887766653110       001123334443333                                     3


Q ss_pred             EECCCcEEEEeCCCCeeE--EEEec----------CCCCeEEEEEcCCCCEEEEEEC----------CCcEEEEeCCCCe
Q 006220          523 GSSDKTVRLWDVSSGECV--RIFIG----------HRSMILSLAMSPDGRYMASGDE----------DGTIMMWDLASGR  580 (656)
Q Consensus       523 gs~dg~V~iwd~~~~~~~--~~~~~----------h~~~i~~l~~sp~g~~L~s~~~----------dg~I~iwD~~~~~  580 (656)
                      .+..+.|.+.|...+...  ..+.-          .......++++|+++.+++...          ++.|.++|+.+++
T Consensus       282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k  361 (426)
T 3c75_H          282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE  361 (426)
T ss_dssp             EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence            333344444444332211  00000          0011123689999887776542          3579999999999


Q ss_pred             eeEeeeCCCccEEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCCceeec
Q 006220          581 CVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       581 ~~~~~~~h~~~V~~l~~s~~~~-~l~sgs-~Dg~I~iWd~~~~~~~~~~  627 (656)
                      .+.++... ...+++.|+|||+ +++++. .++.|.|+|+.+.+.+...
T Consensus       362 vv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          362 RINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            99988632 2478999999999 888888 5899999999999877654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.20  E-value=1.4e-08  Score=105.13  Aligned_cols=193  Identities=11%  Similarity=0.014  Sum_probs=134.2

Q ss_pred             CEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220          423 PVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       423 ~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      -..+..|+|++. ++++...++.|..||..++... .+. ....+.++.|+++|.++++. .+ .|.+||..+++.....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence            346788999755 5566667889999999876543 333 34579999999999876654 44 4999999877654433


Q ss_pred             cC----CCCCeeEEEEcCCCCEEEEEEC------CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCc
Q 006220          502 AG----HLSDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGT  570 (656)
Q Consensus       502 ~~----~~~~V~~v~~~p~~~~l~tgs~------dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~  570 (656)
                      ..    ....+.+++++|+|+++++...      .+.|..+|  +++... +..+......++|+|+|+.|+.+ +.++.
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            21    1235889999999987665442      24566666  555443 33333457789999999877655 45689


Q ss_pred             EEEEeCC--CC-e-----eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          571 IMMWDLA--SG-R-----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       571 I~iwD~~--~~-~-----~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      |.+||+.  ++ .     .+..+......+.+++++++|.++++...++.|.+||. .++.
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~  262 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH  262 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCE
Confidence            9999986  55 3     22233334456789999999998888777889999998 4443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.19  E-value=4.2e-12  Score=134.43  Aligned_cols=188  Identities=13%  Similarity=0.063  Sum_probs=113.7

Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCC-eeE
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDC  510 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~-V~~  510 (656)
                      ++..+++++.||.|+.||..+++.+..+..  .++.+..+..++..+++++.||.++.||..+++.+..+..+... +.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            477899999999999999999999888876  45555556667778888889999999999888877665533211 111


Q ss_pred             -EEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC
Q 006220          511 -VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT  589 (656)
Q Consensus       511 -v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~  589 (656)
                       ..+ ..+..+++|+.++.|+.||..+|+.+..+..+.    ...++|++..+++++.|+.|..||..+|+.+..+..+.
T Consensus        86 sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~  160 (369)
T 2hz6_A           86 SPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD  160 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred             CceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence             011 134578888899999999999999988776553    24567788899999999999999999998776654221


Q ss_pred             ccEEEEEEcCCC---CEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          590 SCVWTLAYSCEG---SLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       590 ~~V~~l~~s~~~---~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                        ....+++.+.   ..+++++.||.|+.||..+++......
T Consensus       161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence              1222333332   467778999999999999998776543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.18  E-value=1.1e-11  Score=131.12  Aligned_cols=204  Identities=13%  Similarity=0.002  Sum_probs=115.9

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeC
Q 006220          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA  441 (656)
Q Consensus       362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~  441 (656)
                      ++..+++|+.||.|..||..++.                            ....+..  +++.+..+..++..+++++.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~----------------------------~~W~~~~--~~~~s~p~~~~g~~~v~~s~   57 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGS----------------------------IKWTLKE--DPVLQVPTHVEEPAFLPDPN   57 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCC----------------------------EEEEEEC--CCSCCCC-----CCEEECTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC----------------------------EEEEecC--CCceecceEcCCCEEEEeCC
Confidence            57889999999999999987532                            1122222  33444445567778888889


Q ss_pred             CCeEEEEeccCCceeEEeeCCCcc-EE-EEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCE
Q 006220          442 DTTIRLWSTKLNANLVCYKGHNYP-VW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY  519 (656)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~-V~-~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~  519 (656)
                      ||.|+.||..+++.+..+..+... +. +..+. .+..+++|+.|+.++.||..+++.+..+..+.    ...++|++..
T Consensus        58 dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~  132 (369)
T 2hz6_A           58 DGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSL  132 (369)
T ss_dssp             TCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------
T ss_pred             CCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCE
Confidence            999999999988887666543211 11 00111 34567888899999999999998887776543    2345678889


Q ss_pred             EEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC---CEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEE-EE
Q 006220          520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW-TL  595 (656)
Q Consensus       520 l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g---~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~-~l  595 (656)
                      +++++.|+.|+.||.++|+.+..+..+.  .....+++++   ..+++++.||.|..||..+|+.+...... .++. ..
T Consensus       133 v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~pv~~~~  209 (369)
T 2hz6_A          133 LYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-SPVVAFY  209 (369)
T ss_dssp             EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-SCEEEEE
T ss_pred             EEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-CceEEEE
Confidence            9999999999999999998776554221  1223334332   56777889999999999999988777643 3443 34


Q ss_pred             EEcCCCCE
Q 006220          596 AYSCEGSL  603 (656)
Q Consensus       596 ~~s~~~~~  603 (656)
                      .++++|..
T Consensus       210 ~~~~dg~~  217 (369)
T 2hz6_A          210 VWQREGLR  217 (369)
T ss_dssp             ECTTSSCE
T ss_pred             EecCCceE
Confidence            55666643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.17  E-value=1.4e-09  Score=124.89  Aligned_cols=197  Identities=14%  Similarity=0.067  Sum_probs=137.8

Q ss_pred             CccCEEEEEEccCCCEEEEE-----eCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCc--------
Q 006220          420 HSGPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT--------  486 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~--------  486 (656)
                      |...+.+++|||||++|+.+     +...+|++||+.+++.+... .+......++|+ ||+.|+.++.+..        
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            44578889999999988743     33357999999998865431 111113578999 9999999987743        


Q ss_pred             -----EEEEECCCCce--eEEecC---CCCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCCCCe-eEEEEecCCCCeE
Q 006220          487 -----ARIWSMDRIQP--LRIMAG---HLSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGE-CVRIFIGHRSMIL  551 (656)
Q Consensus       487 -----i~lwd~~~~~~--~~~~~~---~~~~V~~v~~~p~~~~l~tgs~----dg~V~iwd~~~~~-~~~~~~~h~~~i~  551 (656)
                           |++|++.+...  ...+..   |...+..+.|+|+|++|+....    ++.|++||+.++. ....+..+.....
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~  284 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV  284 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence                 99999887653  334433   3445788999999999866543    2589999998763 4455666666655


Q ss_pred             EEEEcCCCCEEEEEEC----CCcEEEEeCCCCee--eEeeeCCCccEEEEEEcCCCCEEEEEECCC---cEEEEeCCCC
Q 006220          552 SLAMSPDGRYMASGDE----DGTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADC---TVKLWDVTTS  621 (656)
Q Consensus       552 ~l~~sp~g~~L~s~~~----dg~I~iwD~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg---~I~iWd~~~~  621 (656)
                      .. ++++|..|+..+.    .+.|..||+.++..  ...+..|...+.  .|+++++.|+....++   .|++|++..+
T Consensus       285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence            55 6677766555443    36799999987654  345666665554  8899998887766544   6899998754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.16  E-value=6.4e-08  Score=102.24  Aligned_cols=196  Identities=8%  Similarity=-0.022  Sum_probs=135.0

Q ss_pred             EEEEccCCCEEEEEe----------CCCeEEEEeccCCceeEEeeCC-------CccEEEEEEecCCCEEEEEEC--CCc
Q 006220          426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT  486 (656)
Q Consensus       426 ~l~~spd~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~sgs~--Dg~  486 (656)
                      .+.++||+++++.+.          .++.|.+||..+.+.+..+...       ......+.|+|+|+++++++.  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999998875          3678999999988777665432       123457999999999998874  578


Q ss_pred             EEEEECCCCceeEE-ecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEEe-----cCCCCe-EEEEEcCC
Q 006220          487 ARIWSMDRIQPLRI-MAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFI-----GHRSMI-LSLAMSPD  558 (656)
Q Consensus       487 i~lwd~~~~~~~~~-~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~-----~h~~~i-~~l~~sp~  558 (656)
                      |.++| .+++.+.. +...    .|+.+.|.+ +.+++.+.||.+.+||. +++.+....     ....++ ....+.++
T Consensus       150 v~viD-~t~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence            99999 99888777 5422    134555655 45566778999999999 887763322     112222 23456776


Q ss_pred             CCEEEEEECCCcEEEEeCCCCe--eeEeeeC----------CCccEEEEEEcCCCCEEEEEEC----------CCcEEEE
Q 006220          559 GRYMASGDEDGTIMMWDLASGR--CVTPLMG----------HTSCVWTLAYSCEGSLLASGSA----------DCTVKLW  616 (656)
Q Consensus       559 g~~L~s~~~dg~I~iwD~~~~~--~~~~~~~----------h~~~V~~l~~s~~~~~l~sgs~----------Dg~I~iW  616 (656)
                      +..++..+..+.+.+.|+..+.  .+..+..          .......+.++++++.+..+..          ++.|.++
T Consensus       224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI  303 (373)
T 2mad_H          224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence            6555544578899999997552  2222211          1123445789999888777653          3579999


Q ss_pred             eCCCCCceeec
Q 006220          617 DVTTSTKVLKT  627 (656)
Q Consensus       617 d~~~~~~~~~~  627 (656)
                      |+.+.+.+...
T Consensus       304 D~~t~~vv~~i  314 (373)
T 2mad_H          304 TGLVGQTSSQI  314 (373)
T ss_pred             ECCCCEEEEEE
Confidence            99988776555

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.11  E-value=7.8e-09  Score=105.86  Aligned_cols=198  Identities=12%  Similarity=0.050  Sum_probs=137.9

Q ss_pred             eEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220          414 YTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (656)
Q Consensus       414 ~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~  492 (656)
                      ...+..+.....+..|+|+++ +++++..++.|..|+.. +. ...+..+...+.+++++++|+++++...++.|.+|+.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            334445556678899999998 56777788999999984 44 4445556667899999999996666556688999998


Q ss_pred             CCCceeEEec---C-CCCCeeEEEEcCCCCEEEE----EEC-------------CCcEEEEeCCCCeeEEEEecCCCCeE
Q 006220          493 DRIQPLRIMA---G-HLSDVDCVRWHINCNYIAT----GSS-------------DKTVRLWDVSSGECVRIFIGHRSMIL  551 (656)
Q Consensus       493 ~~~~~~~~~~---~-~~~~V~~v~~~p~~~~l~t----gs~-------------dg~V~iwd~~~~~~~~~~~~h~~~i~  551 (656)
                      + ++......   + ....+..++++|+|+++++    |+.             .+.|..||..+++.....  ......
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~  191 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN  191 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence            6 44322221   1 1234678999999998886    332             256888888777665443  335578


Q ss_pred             EEEEcCCCCEEEEEECC------CcEEEEeCCCCeeeEe---e-eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          552 SLAMSPDGRYMASGDED------GTIMMWDLASGRCVTP---L-MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       552 ~l~~sp~g~~L~s~~~d------g~I~iwD~~~~~~~~~---~-~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      .++|+|+|+.|+.+...      +.|.+||+..+. +..   + ....+....++++++|++.++. .+ .|.+|+..
T Consensus       192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~  266 (305)
T 3dr2_A          192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSD  266 (305)
T ss_dssp             EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTT
T ss_pred             ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECCC
Confidence            89999999988877665      789999987654 211   1 1123445678999999955544 44 49999984

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.08  E-value=6.3e-09  Score=109.28  Aligned_cols=198  Identities=7%  Similarity=-0.042  Sum_probs=130.3

Q ss_pred             EEEEccCCCEEEEEe----------CCCeEEEEeccCCceeEEeeCC-------CccEEEEEEecCCCEEEEEEC--CCc
Q 006220          426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT  486 (656)
Q Consensus       426 ~l~~spd~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~sgs~--Dg~  486 (656)
                      .+.++||+++++++.          .+++|.+||+.+++.+..+...       ......+.++|+|++++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999888876          3688999999999998887643       123457999999999998874  457


Q ss_pred             EEE--EECCCCceeEEecC-C-----------------CCCeeEEEE--------------------------cCCCCEE
Q 006220          487 ARI--WSMDRIQPLRIMAG-H-----------------LSDVDCVRW--------------------------HINCNYI  520 (656)
Q Consensus       487 i~l--wd~~~~~~~~~~~~-~-----------------~~~V~~v~~--------------------------~p~~~~l  520 (656)
                      +.+  +|+.+   +..+.. .                 .+.+..+..                          .+++..+
T Consensus       149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~  225 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence            888  88865   222210 0                 000000100                          2223333


Q ss_pred             EEEECCCcEEEEeCCCCe--eEEEEec-------C---CCCeEEEEEcCCCCEEEEEEC---------CCcEEEEeCCCC
Q 006220          521 ATGSSDKTVRLWDVSSGE--CVRIFIG-------H---RSMILSLAMSPDGRYMASGDE---------DGTIMMWDLASG  579 (656)
Q Consensus       521 ~tgs~dg~V~iwd~~~~~--~~~~~~~-------h---~~~i~~l~~sp~g~~L~s~~~---------dg~I~iwD~~~~  579 (656)
                      +..+. +.|.+.|..++.  .+..+..       +   ......++++|+|+.++.+..         ++.+.++|+.++
T Consensus       226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~  304 (368)
T 1mda_H          226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence            33333 666677765432  2221110       0   011122689999998886543         235669999999


Q ss_pred             eeeEeeeCCCccEEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCCceeecc
Q 006220          580 RCVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       580 ~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs-~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      +.+.++.... ..++++|+|||+ .+++.. .++.|.++|+.+.+.+....
T Consensus       305 ~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          305 QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence            9998886443 578999999997 566666 59999999999987765543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.07  E-value=4.4e-09  Score=109.76  Aligned_cols=200  Identities=10%  Similarity=0.089  Sum_probs=138.2

Q ss_pred             cCEEEEEEccCCCEEEEEe--CCCeEEEEeccCCceeEEee-------CCCccEEEEEEecCCCEEEEEEC-----CCcE
Q 006220          422 GPVYSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYK-------GHNYPVWDVQFNPQGHYFASSSH-----DRTA  487 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s--~Dg~I~lwd~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~l~sgs~-----Dg~i  487 (656)
                      ..+..++++++|+.+++..  .++.++||.+.++. +..+.       .|-..+.+++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999988864  23436666665443 33332       24467899999999876665443     5789


Q ss_pred             EEEECCCCceeEEecCC------CCCeeEEEEcCCCCEE-EEEE---CCCcEEEEeCCCCeeEEEEecCC----------
Q 006220          488 RIWSMDRIQPLRIMAGH------LSDVDCVRWHINCNYI-ATGS---SDKTVRLWDVSSGECVRIFIGHR----------  547 (656)
Q Consensus       488 ~lwd~~~~~~~~~~~~~------~~~V~~v~~~p~~~~l-~tgs---~dg~V~iwd~~~~~~~~~~~~h~----------  547 (656)
                      .+||+.+++.++.+...      ...+..+++++++..+ ++.+   .++.|.+||..+++..+.+.+|.          
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            99999988877666422      2356899999865555 4444   57899999999888777654421          


Q ss_pred             -------------------CCeEEEEEcCCCCEEEEEECCC-cEEEEeCC---CCe-----eeE--eeeCCCccEEEEEE
Q 006220          548 -------------------SMILSLAMSPDGRYMASGDEDG-TIMMWDLA---SGR-----CVT--PLMGHTSCVWTLAY  597 (656)
Q Consensus       548 -------------------~~i~~l~~sp~g~~L~s~~~dg-~I~iwD~~---~~~-----~~~--~~~~h~~~V~~l~~  597 (656)
                                         ..+..|+|+|+|+.|+.+..++ .|..++..   .+.     ...  ...++.+....+++
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~  255 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI  255 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence                               1357899999999998887766 44444431   110     000  11133345567999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          598 SCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       598 s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      +++|.++++...++.|.+||..+++
T Consensus       256 d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          256 DKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             CTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             CCCCCEEEEccCCCeEEEEECCCCC
Confidence            9999999999899999999984443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.06  E-value=4.1e-08  Score=103.97  Aligned_cols=226  Identities=10%  Similarity=0.085  Sum_probs=152.2

Q ss_pred             EEc--CCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee-------cCccCEEEE
Q 006220          358 SIS--QDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-------GHSGPVYSA  427 (656)
Q Consensus       358 ~fs--~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~l  427 (656)
                      .++  +++++|.+. ..++.|.|+|+.+....                        .+......       .....-..+
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~------------------------p~~~k~ie~~~~~~~~g~s~Ph~~  143 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPRE------------------------PKIIKVIEPEEVKKVSGYSRLHTV  143 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTS------------------------CEEEEEECHHHHHHHHCEEEEEEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCC------------------------ceeeeeechhhcccccCCCcccce
Confidence            446  788887764 55788999998642111                        11111110       011133456


Q ss_pred             EEccCCCEEEEEeCC------CeEEEEeccCCceeEEeeCCCc---cEEEEEEecCCCEEEEEE----------------
Q 006220          428 SFSPLGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNY---PVWDVQFNPQGHYFASSS----------------  482 (656)
Q Consensus       428 ~~spd~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~sgs----------------  482 (656)
                      ..+|+| +++++..+      |.|.+.|..+++.+..+.....   --.++.|+|+++.+++..                
T Consensus       144 ~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~  222 (462)
T 2ece_A          144 HCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL  222 (462)
T ss_dssp             EECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred             eECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence            778999 77776666      7899999999999888863222   234688999999888885                


Q ss_pred             ---CCCcEEEEECCCCceeEEecCC-C-CCeeEEEE--cCCCCEEEEEEC------CCcEEEEeCCCCeeE--EEE--ec
Q 006220          483 ---HDRTARIWSMDRIQPLRIMAGH-L-SDVDCVRW--HINCNYIATGSS------DKTVRLWDVSSGECV--RIF--IG  545 (656)
Q Consensus       483 ---~Dg~i~lwd~~~~~~~~~~~~~-~-~~V~~v~~--~p~~~~l~tgs~------dg~V~iwd~~~~~~~--~~~--~~  545 (656)
                         .+.+|.+||+.+++.+..+... . .....+.|  +|+++++++++.      +++|.+|....+...  ..+  ..
T Consensus       223 ~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~  302 (462)
T 2ece_A          223 KDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPA  302 (462)
T ss_dssp             HHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECC
T ss_pred             hhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCC
Confidence               3689999999988777777642 1 23445556  999999988774      568887766554321  111  11


Q ss_pred             C----------------CCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCC---CeeeEeeeCC-----------C---cc
Q 006220          546 H----------------RSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS---GRCVTPLMGH-----------T---SC  591 (656)
Q Consensus       546 h----------------~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~---~~~~~~~~~h-----------~---~~  591 (656)
                      .                ......|.+||||++|+++. ..+.|.+||+..   .+.+..+...           .   +.
T Consensus       303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg  382 (462)
T 2ece_A          303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA  382 (462)
T ss_dssp             EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred             ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence            0                23467899999999988776 468999999852   3455544321           0   13


Q ss_pred             EEEEEEcCCCCEEEEEE
Q 006220          592 VWTLAYSCEGSLLASGS  608 (656)
Q Consensus       592 V~~l~~s~~~~~l~sgs  608 (656)
                      ...+.++|||++|+++.
T Consensus       383 Pr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          383 PQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCEEECTTSSEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEc
Confidence            57899999999999888

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.04  E-value=4.4e-08  Score=102.90  Aligned_cols=235  Identities=15%  Similarity=0.084  Sum_probs=158.0

Q ss_pred             cCCCCEEEEEeC-----CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCC
Q 006220          360 SQDGSLVAGGFS-----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (656)
Q Consensus       360 s~dg~~La~g~~-----dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~  434 (656)
                      .|+++.+.+...     ++.|.+.|..+.                            +....+.....+  .+.++|||+
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~----------------------------~v~~~I~vG~~P--~va~spDG~   90 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAG----------------------------RVIGMIDGGFLP--NPVVADDGS   90 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTT----------------------------EEEEEEEECSSC--EEEECTTSS
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCC----------------------------eEEEEEECCCCC--cEEECCCCC
Confidence            578887777755     578999997752                            222233333344  399999999


Q ss_pred             EEEEEe----------CCCeEEEEeccCCceeEEeeCC-------CccEEEEEEecCCCEEEEEEC--CCcEEEEECCCC
Q 006220          435 FILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRI  495 (656)
Q Consensus       435 ~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~sgs~--Dg~i~lwd~~~~  495 (656)
                      ++++++          .++.|.+||..+.+.+..+...       ....+.+.|+|+|++++++..  ++.|.++|+.+.
T Consensus        91 ~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~  170 (386)
T 3sjl_D           91 FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK  170 (386)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             EEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC
Confidence            887765          3678999999999888776432       124567999999999988874  689999999999


Q ss_pred             ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeEEEEecCC----CCeE-EEEEc-CCCCEEEEEECC
Q 006220          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHR----SMIL-SLAMS-PDGRYMASGDED  568 (656)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~----~~i~-~l~~s-p~g~~L~s~~~d  568 (656)
                      +.+..+....  . ...+....+.+++.+.||.+.+.++.+ ++.......+.    .++. ...|. ++|++++ .+.+
T Consensus       171 ~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~  246 (386)
T 3sjl_D          171 AFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYT  246 (386)
T ss_dssp             EEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTT
T ss_pred             cEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCC
Confidence            9988885321  1 223333446777888899999999876 55433221111    2221 24564 6776655 5558


Q ss_pred             CcEEEEeCCCCe--eeEeee---------C-CCccEEEEEEcCCCCEEEEEEC----------CCcEEEEeCCCCCceee
Q 006220          569 GTIMMWDLASGR--CVTPLM---------G-HTSCVWTLAYSCEGSLLASGSA----------DCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       569 g~I~iwD~~~~~--~~~~~~---------~-h~~~V~~l~~s~~~~~l~sgs~----------Dg~I~iWd~~~~~~~~~  626 (656)
                      |.|.+.|+.++.  .+..+.         + ..+....++++++++.++....          .+.|.+.|+.+.+.+..
T Consensus       247 g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~  326 (386)
T 3sjl_D          247 GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK  326 (386)
T ss_dssp             SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred             CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE
Confidence            999999997653  333332         0 0122335777899888777642          25799999999887765


Q ss_pred             cc
Q 006220          627 TE  628 (656)
Q Consensus       627 ~~  628 (656)
                      ..
T Consensus       327 i~  328 (386)
T 3sjl_D          327 FE  328 (386)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.02  E-value=2.5e-08  Score=114.00  Aligned_cols=187  Identities=12%  Similarity=0.080  Sum_probs=135.1

Q ss_pred             CCeEEEEeccCCceeEEeeCCC------------------------------ccE-EEEEEecCCCEEEEEECCCc----
Q 006220          442 DTTIRLWSTKLNANLVCYKGHN------------------------------YPV-WDVQFNPQGHYFASSSHDRT----  486 (656)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~------------------------------~~V-~~l~~sp~~~~l~sgs~Dg~----  486 (656)
                      +|.|+.||..+++.+..+....                              ..+ ..++++|++..++.++.++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            7899999999999887664210                              011 25788998889999987764    


Q ss_pred             ---------------EEEEECCCCceeEEecC--CC-------CCeeEEEEcCCCC---EEEEEECCCcEEEEeCCCCee
Q 006220          487 ---------------ARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINCN---YIATGSSDKTVRLWDVSSGEC  539 (656)
Q Consensus       487 ---------------i~lwd~~~~~~~~~~~~--~~-------~~V~~v~~~p~~~---~l~tgs~dg~V~iwd~~~~~~  539 (656)
                                     |..||.++++.+..+..  |.       ..+.......+|.   .++.++.+|.++++|..+|+.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           99999999998877753  21       1122222233564   788999999999999999998


Q ss_pred             EEEEecCC-CC--------------------------------------eEEEEEcCCCCEEEEEEC-------------
Q 006220          540 VRIFIGHR-SM--------------------------------------ILSLAMSPDGRYMASGDE-------------  567 (656)
Q Consensus       540 ~~~~~~h~-~~--------------------------------------i~~l~~sp~g~~L~s~~~-------------  567 (656)
                      +....... ..                                      -..++|+|+..++++...             
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~  421 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP  421 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence            74432111 00                                      112688998888777532             


Q ss_pred             --------------------------------CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEE
Q 006220          568 --------------------------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL  615 (656)
Q Consensus       568 --------------------------------dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i  615 (656)
                                                      +|.|..||+.+|+.+-++..+. ++..-.++..+.++++|+.||.|+.
T Consensus       422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a  500 (689)
T 1yiq_A          422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIA  500 (689)
T ss_dssp             CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEE
T ss_pred             cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEE
Confidence                                            3779999999999988876543 2333355667889999999999999


Q ss_pred             EeCCCCCceeeccc
Q 006220          616 WDVTTSTKVLKTEE  629 (656)
Q Consensus       616 Wd~~~~~~~~~~~~  629 (656)
                      ||..+++.+.+...
T Consensus       501 ~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          501 YAADTGEKLWEQPA  514 (689)
T ss_dssp             EETTTCCEEEEEEC
T ss_pred             EECCCCccceeeeC
Confidence            99999998876654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.01  E-value=1.9e-08  Score=114.80  Aligned_cols=187  Identities=10%  Similarity=0.058  Sum_probs=138.4

Q ss_pred             CCeEEEEeccCCceeEEeeCCCcc--------------------------------EEEEEEecCCCEEEEEECCC----
Q 006220          442 DTTIRLWSTKLNANLVCYKGHNYP--------------------------------VWDVQFNPQGHYFASSSHDR----  485 (656)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~--------------------------------V~~l~~sp~~~~l~sgs~Dg----  485 (656)
                      +|.|+.||..+++.+..+......                                ...++++|++..++.++.++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            789999999999988776542211                                12578889888988887664    


Q ss_pred             ---------------cEEEEECCCCceeEEecC--CC-------CCeeEEEEcCCC---CEEEEEECCCcEEEEeCCCCe
Q 006220          486 ---------------TARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINC---NYIATGSSDKTVRLWDVSSGE  538 (656)
Q Consensus       486 ---------------~i~lwd~~~~~~~~~~~~--~~-------~~V~~v~~~p~~---~~l~tgs~dg~V~iwd~~~~~  538 (656)
                                     +|..+|.++++.+..+..  |.       .....+....+|   ..+++++.+|.|+++|..+|+
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           599999999998877653  21       122233334467   688999999999999999999


Q ss_pred             eEEEEecCCC-----------Ce------------------------EEEEEcCCCCEEEEEECC---------------
Q 006220          539 CVRIFIGHRS-----------MI------------------------LSLAMSPDGRYMASGDED---------------  568 (656)
Q Consensus       539 ~~~~~~~h~~-----------~i------------------------~~l~~sp~g~~L~s~~~d---------------  568 (656)
                      .+..+.....           ++                        ..++++|++.++++...+               
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~  428 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence            9876642210           11                        146889988888776432               


Q ss_pred             ----------------------------CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          569 ----------------------------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       569 ----------------------------g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                                                  |.|..||+.+++.+-++.. ..++++..++..+.+++.++.||.+++||..+
T Consensus       429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t  507 (677)
T 1kb0_A          429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT  507 (677)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence                                        7899999999998877753 23444555667788899999999999999999


Q ss_pred             CCceeeccc
Q 006220          621 STKVLKTEE  629 (656)
Q Consensus       621 ~~~~~~~~~  629 (656)
                      ++.+.....
T Consensus       508 G~~lw~~~~  516 (677)
T 1kb0_A          508 GEKLWEAPT  516 (677)
T ss_dssp             CCEEEEEEC
T ss_pred             CceeeeeeC
Confidence            998876653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.93  E-value=1.9e-06  Score=86.02  Aligned_cols=203  Identities=9%  Similarity=-0.005  Sum_probs=132.6

Q ss_pred             cCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE-ECCCcEEEEECCCCceeE
Q 006220          422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLR  499 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~Dg~i~lwd~~~~~~~~  499 (656)
                      ..+.+++|++++..|+ +...++.|..++..................++++++++..++.+ ...+.|.+++.+......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            4578999999766555 55567899999998655433333333467899999976555544 467899999987644333


Q ss_pred             EecCCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEE-ECCCcEEEE
Q 006220          500 IMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASG-DEDGTIMMW  574 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iw  574 (656)
                      ...........++++|++..|+.+..   .+.|..+++.... ...+. ........++++|+++.|+.+ ...+.|.++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            33333356789999997666665554   3688888875433 33332 333467889999987766555 456789999


Q ss_pred             eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       575 D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      |.........+.+ ......++.. ++.++++....+.|.++|..+++.....
T Consensus       195 ~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i  245 (267)
T 1npe_A          195 NPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (267)
T ss_dssp             ETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence            9875443333332 2334567664 3444444446689999999887765444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.92  E-value=1e-07  Score=101.78  Aligned_cols=208  Identities=12%  Similarity=0.035  Sum_probs=129.2

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       356 ~l~fs~dg~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+++||||++|.++.          .++.|.++|..+.......... +.               .   . . .......
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~-g~---------------~---r-~-~~g~~P~  180 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELP-DA---------------P---R-F-LVGTYQW  180 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET-TC---------------C---C-C-CBSCCGG
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECC-Cc---------------c---c-c-ccCCCcc
Confidence            899999999888875          3678999998763322111000 00               0   0 0 0011234


Q ss_pred             EEEEccCCCEEEEEeC--CCeEEEEeccCCceeEEeeCCCc-------cEEEEEEecCC---------------------
Q 006220          426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNPQG---------------------  475 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~l~~sp~~---------------------  475 (656)
                      .+.|+|||++++++..  +++|.+.|+.+++.+..+.....       .-.-+.++++|                     
T Consensus       181 ~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~  260 (426)
T 3c75_H          181 MNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH  260 (426)
T ss_dssp             GSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS
T ss_pred             eEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec
Confidence            5788999988887764  57899999888877666553111       00012233333                     


Q ss_pred             ----------------CEEEEEECCCcEEEEECCCCceeE--Eec---C-------CCCCeeEEEEcCCCCEEEEEEC--
Q 006220          476 ----------------HYFASSSHDRTARIWSMDRIQPLR--IMA---G-------HLSDVDCVRWHINCNYIATGSS--  525 (656)
Q Consensus       476 ----------------~~l~sgs~Dg~i~lwd~~~~~~~~--~~~---~-------~~~~V~~v~~~p~~~~l~tgs~--  525 (656)
                                      ..++..+..+.+.+.|+.......  .+.   .       .......++++|+++.+++...  
T Consensus       261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~  340 (426)
T 3c75_H          261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR  340 (426)
T ss_dssp             CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred             cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence                            333333334444444443221110  000   0       0011223788999888777643  


Q ss_pred             --------CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCeeeEee
Q 006220          526 --------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGD-EDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       526 --------dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~L~s~~-~dg~I~iwD~~~~~~~~~~  585 (656)
                              ++.|.++|..+.+.+..+... .....+.|+|||+ +++++. .++.|.++|+.+++.+.++
T Consensus       341 ~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          341 DEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence                    357999999999999888643 2478899999999 888887 5999999999999999887

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.92  E-value=3.7e-07  Score=94.02  Aligned_cols=263  Identities=7%  Similarity=0.029  Sum_probs=155.1

Q ss_pred             EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      +.+.+.-....+++|+++++++.++..++.|..|+............  ....  .  ... ..+..  ........+.+
T Consensus        12 i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~--~~~~--~--~~~-~~g~~--~~~~~~~~~~p   82 (322)
T 2fp8_A           12 ILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYA--SPYW--N--KAF-CENST--DAEKRPLCGRT   82 (322)
T ss_dssp             EEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEES--CTTC--C--HHH-HTTCC--CGGGHHHHCCE
T ss_pred             eecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecc--cccc--c--ccc-ccccc--chhccccCCCC
Confidence            34443334567888999999888888899999998654211100000  0000  0  000 00000  00000112357


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC-----CCccEEEEEEec-CCCEEEEEEC---------------
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-----HNYPVWDVQFNP-QGHYFASSSH---------------  483 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-----h~~~V~~l~~sp-~~~~l~sgs~---------------  483 (656)
                      .++++.+++..|+.+...+.|..+|..++.. ..+..     ......++++.+ +|+..++-..               
T Consensus        83 ~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~  161 (322)
T 2fp8_A           83 YDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS  161 (322)
T ss_dssp             EEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred             ceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence            8899998334455555555688888765432 22211     112467899999 8987666432               


Q ss_pred             --CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCe--eEEEEecCCCCeEEEEEcCC
Q 006220          484 --DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPD  558 (656)
Q Consensus       484 --Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~~~--~~~~~~~h~~~i~~l~~sp~  558 (656)
                        ++.+..||..+++...... .......++|+|+++.|+++ +..+.|..|++....  ....+....+ ...+++.++
T Consensus       162 ~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~  239 (322)
T 2fp8_A          162 DKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD  239 (322)
T ss_dssp             CCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT
T ss_pred             CCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCC
Confidence              3678888887665433222 22445789999999877665 456899999987521  1222222233 788999999


Q ss_pred             CCEEEEEEC----------CCcEEEEeCCCCeeeEeeeCCC----ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          559 GRYMASGDE----------DGTIMMWDLASGRCVTPLMGHT----SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       559 g~~L~s~~~----------dg~I~iwD~~~~~~~~~~~~h~----~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      |++.++...          .+.|..+|. .++.+..+....    ..+.++++ .++.++++....+.|.++++...
T Consensus       240 G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          240 GHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             SCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             CCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence            987666544          467888886 577777665432    34666766 46666666667788999987643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.90  E-value=1.9e-06  Score=85.97  Aligned_cols=220  Identities=9%  Similarity=0.053  Sum_probs=140.9

Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       353 ~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      .+.+++|++++..|. +...++.|.++++.....                            ............++++++
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~----------------------------~~~~~~~~~~p~~ia~d~   88 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----------------------------TTIIRQDLGSPEGIALDH   88 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----------------------------EEEECTTCCCEEEEEEET
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc----------------------------EEEEECCCCCccEEEEEe
Confidence            578999999765554 555578899999764110                            011111224568899999


Q ss_pred             CCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC---CCcEEEEECCCCceeEEecCCCCC
Q 006220          432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRIQPLRIMAGHLSD  507 (656)
Q Consensus       432 d~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~---Dg~i~lwd~~~~~~~~~~~~~~~~  507 (656)
                      ++..|+ +....+.|.+++.+.................++++|++..++.+..   .+.|..++++..............
T Consensus        89 ~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~  168 (267)
T 1npe_A           89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL  168 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSC
T ss_pred             cCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCC
Confidence            766554 5555788999998754332223222245689999997666555553   368888888754332223233456


Q ss_pred             eeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee
Q 006220          508 VDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (656)
Q Consensus       508 V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~  586 (656)
                      ...++++|++..|+.+. ..+.|..+|.........+.+ ......++.. .+.++++....+.|..+|..+++.+..+.
T Consensus       169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            78999999877776555 567899999876544433333 2334566654 34444444456899999999999888876


Q ss_pred             CCC-ccEEEEEEcCCCC
Q 006220          587 GHT-SCVWTLAYSCEGS  602 (656)
Q Consensus       587 ~h~-~~V~~l~~s~~~~  602 (656)
                      ... ...+.+++.|++.
T Consensus       247 ~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          247 PHKQTRLYGITIALSQC  263 (267)
T ss_dssp             CSSCCCCCCEEEECSCC
T ss_pred             cccccccceeeecCccC
Confidence            433 2467788888764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.90  E-value=1.2e-07  Score=97.22  Aligned_cols=219  Identities=11%  Similarity=-0.008  Sum_probs=151.1

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCC
Q 006220          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD  442 (656)
Q Consensus       363 g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~D  442 (656)
                      +..|.+|+.++.|..+|.. ..                            .......+...+.++...+++. ++.++.+
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~----------------------------~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~  156 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GT----------------------------EKWRFKTKKAIYATPIVSEDGT-IYVGSND  156 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SC----------------------------EEEEEECSSCCCSCCEECTTSC-EEEECTT
T ss_pred             CCEEEEEecCCEEEEEcCC-CC----------------------------EEEEEcCCCceeeeeEEcCCCE-EEEEcCC
Confidence            4557778788888888865 11                            1111112233345556666665 6667788


Q ss_pred             CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEE
Q 006220          443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT  522 (656)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t  522 (656)
                      +.|..+|.. +..+..+......+.++...+++..++ ++  +.+..|| .+++....+......+.++...+++. |++
T Consensus       157 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v  230 (330)
T 3hxj_A          157 NYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYV  230 (330)
T ss_dssp             SEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEE
T ss_pred             CEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEE
Confidence            999999998 777766666666677788877777544 44  8899999 67676666665556788888888774 566


Q ss_pred             EECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC
Q 006220          523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS  602 (656)
Q Consensus       523 gs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~  602 (656)
                      ++.++.|..+| .++..+..+......+.++.+.++| .|..++.+|.|..+|. +++.+..+......+.++...++|.
T Consensus       231 ~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~  307 (330)
T 3hxj_A          231 TSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT  307 (330)
T ss_dssp             EETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC
T ss_pred             EcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE
Confidence            77788888888 4666666666554445556666565 5667778888999995 7777777665556677777877876


Q ss_pred             EEEEEECCCcEEEEeCCCC
Q 006220          603 LLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       603 ~l~sgs~Dg~I~iWd~~~~  621 (656)
                       |..++.+|.+++......
T Consensus       308 -l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          308 -IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             -EEEECTTSCEEEEEC---
T ss_pred             -EEEEcCCCeEEEEecccc
Confidence             555888999998876553

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.88  E-value=4.5e-07  Score=90.26  Aligned_cols=195  Identities=8%  Similarity=-0.012  Sum_probs=140.6

Q ss_pred             CEEEEEEccCCCEEEEEeC--CCeEEEEeccCCceeEEeeCCC-ccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCcee
Q 006220          423 PVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPL  498 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~~~  498 (656)
                      ....+.|++++.++++.+.  +++|+++|+.+++.+..+.-.. .....+++.  +..++.+. .++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            3689999998754444443  5799999999999888765322 223355555  44555444 6789999999999988


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEECCCcEEE
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMM  573 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~L~s~~~dg~I~i  573 (656)
                      ..+.....  ....+++++..++++..++.|.++|..+.+.++.+....     ..+..+.|. +|...+....++.|.+
T Consensus       100 ~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v  176 (266)
T 2iwa_A          100 KNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR  176 (266)
T ss_dssp             EEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence            88863211  123355688888877778999999999998887765321     236678888 7765555556889999


Q ss_pred             EeCCCCeeeEeeeCC-------------CccEEEEEEcCCCCE-EEEEECCCcEEEEeCCCCC
Q 006220          574 WDLASGRCVTPLMGH-------------TSCVWTLAYSCEGSL-LASGSADCTVKLWDVTTST  622 (656)
Q Consensus       574 wD~~~~~~~~~~~~h-------------~~~V~~l~~s~~~~~-l~sgs~Dg~I~iWd~~~~~  622 (656)
                      .|..+++.+..+...             ......++|+|+++. ++++...+.|.+.++....
T Consensus       177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            999999998887532             135689999999765 5556678899999886643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.85  E-value=1.2e-07  Score=99.60  Aligned_cols=87  Identities=13%  Similarity=0.010  Sum_probs=67.7

Q ss_pred             EEEcCCCCEEEEEEC-C--------CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCC
Q 006220          511 VRWHINCNYIATGSS-D--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGD-EDGTIMMWDLASG  579 (656)
Q Consensus       511 v~~~p~~~~l~tgs~-d--------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~L~s~~-~dg~I~iwD~~~~  579 (656)
                      ++++|+++.++++.. .        +.+.++|+.+++.+..+.... ....|+|+|||+ .+++.. .++.|.++|+.++
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence            789999998887643 2        356699999999988776443 578999999998 556666 5999999999999


Q ss_pred             eeeEeeeCCCccEEEEEEcC
Q 006220          580 RCVTPLMGHTSCVWTLAYSC  599 (656)
Q Consensus       580 ~~~~~~~~h~~~V~~l~~s~  599 (656)
                      +.+.++..... .+.+++.+
T Consensus       348 kvv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          348 QDQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             EEEEECCCCSC-CCEEECCC
T ss_pred             cEEEEEECCCC-CCEEEeec
Confidence            99999875543 35666543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.84  E-value=1.6e-06  Score=91.13  Aligned_cols=189  Identities=8%  Similarity=0.001  Sum_probs=129.7

Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCe---
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV---  508 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V---  508 (656)
                      ++..++.++.++.|..+|..+++.+..+.............  +..+++++.++.+..+|..+++.+..+.......   
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            35678888899999999999999887666443222222222  4578888899999999999998877665432211   


Q ss_pred             --eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC-------eEEEEEcC--CCCEEEEEECCCcEEEEeCC
Q 006220          509 --DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-------ILSLAMSP--DGRYMASGDEDGTIMMWDLA  577 (656)
Q Consensus       509 --~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~-------i~~l~~sp--~g~~L~s~~~dg~I~iwD~~  577 (656)
                        .....  .+..+++++.++.|..+|..+|+.+..+......       +..+..+|  .+..++.++.+|.+..+|..
T Consensus       180 ~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~  257 (376)
T 3q7m_A          180 GESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR  257 (376)
T ss_dssp             CCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred             CCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence              11122  2457888888999999999999988776532110       00011111  25677888889999999999


Q ss_pred             CCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       578 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      +|+.+.....  ....++..  ++..++.++.+|.|..+|..+++......
T Consensus       258 tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          258 SGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             TCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             CCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence            9988766542  23444444  36678888899999999999998776554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.83  E-value=2.2e-06  Score=89.98  Aligned_cols=227  Identities=11%  Similarity=0.008  Sum_probs=148.9

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee--cCccCEEEEEEccCCCEEEEE
Q 006220          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ--GHSGPVYSASFSPLGDFILSS  439 (656)
Q Consensus       362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~spd~~~L~s~  439 (656)
                      ++..+.+++.++.|..+|..+....-.                          ....  ....++    ..  +..++.+
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~--------------------------~~~~~~~~~~p~----~~--~~~v~v~  149 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQ--------------------------TKVAGEALSRPV----VS--DGLVLIH  149 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEE--------------------------EECSSCCCSCCE----EE--TTEEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEE--------------------------EeCCCceEcCCE----EE--CCEEEEE
Confidence            456777788999999999875321110                          0000  011222    11  4578888


Q ss_pred             eCCCeEEEEeccCCceeEEeeCCCccE-----EEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCC-------
Q 006220          440 SADTTIRLWSTKLNANLVCYKGHNYPV-----WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-------  507 (656)
Q Consensus       440 s~Dg~I~lwd~~~~~~~~~~~~h~~~V-----~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~-------  507 (656)
                      +.++.|..+|..+++.+..+.......     ......  +..+++++.++.+..+|..+++.+.........       
T Consensus       150 ~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  227 (376)
T 3q7m_A          150 TSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR  227 (376)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC---------
T ss_pred             cCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccc
Confidence            889999999999998887765432211     122222  456888888999999999998887665422110       


Q ss_pred             eeEEEEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220          508 VDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       508 V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      +..+...|  .+..+++++.++.+..+|..+|+.+.....  .....+..  ++..|+.++.+|.|..+|..+|+.+...
T Consensus       228 ~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          228 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             --CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             ccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence            00011111  356788888899999999999998866542  33444444  3678888889999999999999987766


Q ss_pred             eCC-CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          586 MGH-TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       586 ~~h-~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      ... ...+.+...  .+..|+.++.+|.|.++|..+++......
T Consensus       304 ~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~  345 (376)
T 3q7m_A          304 SDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQK  345 (376)
T ss_dssp             CTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            521 222222222  25678889999999999999988766544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.79  E-value=4e-07  Score=103.84  Aligned_cols=195  Identities=11%  Similarity=0.070  Sum_probs=139.9

Q ss_pred             EEEEEccCCCEEEEEeCCC-------------------eEEEEeccCCceeEEeeCCCc---------cEEEEEEecCC-
Q 006220          425 YSASFSPLGDFILSSSADT-------------------TIRLWSTKLNANLVCYKGHNY---------PVWDVQFNPQG-  475 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg-------------------~I~lwd~~~~~~~~~~~~h~~---------~V~~l~~sp~~-  475 (656)
                      ..++++|++..++.++.++                   +|..+|..+++.+..++....         ....+....+| 
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            3678889888888887664                   599999999999877764211         12223334467 


Q ss_pred             --CEEEEEECCCcEEEEECCCCceeEEecCCCC-----------Ce------------------------eEEEEcCCCC
Q 006220          476 --HYFASSSHDRTARIWSMDRIQPLRIMAGHLS-----------DV------------------------DCVRWHINCN  518 (656)
Q Consensus       476 --~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~-----------~V------------------------~~v~~~p~~~  518 (656)
                        ..+++++.+|.++++|..+++.+..+.....           .+                        ..++++|++.
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~  405 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG  405 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence              6899999999999999999988765542110           00                        1568899888


Q ss_pred             EEEEEECC-------------------------------------------CcEEEEeCCCCeeEEEEecCCCCeEEEEE
Q 006220          519 YIATGSSD-------------------------------------------KTVRLWDVSSGECVRIFIGHRSMILSLAM  555 (656)
Q Consensus       519 ~l~tgs~d-------------------------------------------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~  555 (656)
                      .+++.+.+                                           |.|..||+.+++.+..+.. ..++....+
T Consensus       406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~  484 (677)
T 1kb0_A          406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTL  484 (677)
T ss_dssp             EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEE
T ss_pred             EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcce
Confidence            88876532                                           7899999999999887763 344555567


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC-ccEEEEEEcCCCCEEEEE-EC----------------CCcEEEEe
Q 006220          556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASG-SA----------------DCTVKLWD  617 (656)
Q Consensus       556 sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~sg-s~----------------Dg~I~iWd  617 (656)
                      +..+..++.++.||.+++||..+|+.+.++.... ....-+.|..+|+.+++. +.                .+.+.+|.
T Consensus       485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~  564 (677)
T 1kb0_A          485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFV  564 (677)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEE
T ss_pred             EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEe
Confidence            7788899999999999999999999999887433 222345666788654433 22                36788888


Q ss_pred             CCC
Q 006220          618 VTT  620 (656)
Q Consensus       618 ~~~  620 (656)
                      +..
T Consensus       565 l~~  567 (677)
T 1kb0_A          565 VGG  567 (677)
T ss_dssp             ETC
T ss_pred             ccc
Confidence            763

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.77  E-value=1e-05  Score=82.54  Aligned_cols=227  Identities=8%  Similarity=0.033  Sum_probs=140.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ......++|+++++++++...++.|..|+....                             ... .....+.+.++++.
T Consensus        31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-----------------------------~~~-~~~~~~~p~gia~~   80 (306)
T 2p4o_A           31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-----------------------------QQI-HATVEGKVSGLAFT   80 (306)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-----------------------------EEE-EEECSSEEEEEEEC
T ss_pred             CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-----------------------------eEE-EEeCCCCceeEEEc
Confidence            356789999999998887778889988886531                             001 11122457899999


Q ss_pred             cCCCEEEEEeCCC--eEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce-eEEec----
Q 006220          431 PLGDFILSSSADT--TIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIMA----  502 (656)
Q Consensus       431 pd~~~L~s~s~Dg--~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~-~~~~~----  502 (656)
                      ++++++++.....  .|..++..+++....... .......++..+.+..+++-..++.|+.+|...+.. +....    
T Consensus        81 ~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~  160 (306)
T 2p4o_A           81 SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA  160 (306)
T ss_dssp             TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS
T ss_pred             CCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc
Confidence            9999666554332  466677666654332221 122234555555554445444688899999775421 21111    


Q ss_pred             -----CCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC-Cee--EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 006220          503 -----GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM  573 (656)
Q Consensus       503 -----~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~-~~~--~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~i  573 (656)
                           ......+.+  +|++.+|+.+. ..+.|..||+.. +..  ...+... .....++++++|++.++....+.|.+
T Consensus       161 ~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~  237 (306)
T 2p4o_A          161 RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVR  237 (306)
T ss_dssp             CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred             cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEE
Confidence                 111234455  78887776654 567899999874 321  2222211 34566899999988777777889999


Q ss_pred             EeCCCCeeeE--eeeCCCccEEEEEEc---CCCCEEEEEECCC
Q 006220          574 WDLASGRCVT--PLMGHTSCVWTLAYS---CEGSLLASGSADC  611 (656)
Q Consensus       574 wD~~~~~~~~--~~~~h~~~V~~l~~s---~~~~~l~sgs~Dg  611 (656)
                      +|.. ++...  .+...-...++++|.   +++..|+.++..+
T Consensus       238 ~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          238 IAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             ECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            9974 65532  333333568999998   8877777666543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.77  E-value=1.5e-06  Score=85.62  Aligned_cols=182  Identities=14%  Similarity=0.095  Sum_probs=130.9

Q ss_pred             CEEEEEEccCCCEEEEEeCCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCceeE
Q 006220          423 PVYSASFSPLGDFILSSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLR  499 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~~~~  499 (656)
                      -...+.|+ ++.++.+++.+|  .|+++|+.+++.+....... .....-..+.+..+.... .++.+.+||..+.+.+.
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            35789998 666667777766  89999999999988776433 333332333455555554 68899999999999998


Q ss_pred             EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMMW  574 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~L~s~~~dg~I~iw  574 (656)
                      .+....   ....+++++..|+.+..++.|.++|..+.+.++.+....     ..++.+.|. +|+..+..-.++.|.+.
T Consensus       122 ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vI  197 (262)
T 3nol_A          122 SFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRI  197 (262)
T ss_dssp             EEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEE
Confidence            887432   222333567777777667889999999999888765421     334567776 67655555578899999


Q ss_pred             eCCCCeeeEeeeCC------------CccEEEEEEcCCCCEEEEEECC
Q 006220          575 DLASGRCVTPLMGH------------TSCVWTLAYSCEGSLLASGSAD  610 (656)
Q Consensus       575 D~~~~~~~~~~~~h------------~~~V~~l~~s~~~~~l~sgs~D  610 (656)
                      |..+|+.+..+...            ....+.|+|+|+++.|...|..
T Consensus       198 Dp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          198 DPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             CTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             ECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            99999998887532            1356899999988877776643

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.76  E-value=6.8e-07  Score=102.14  Aligned_cols=180  Identities=10%  Similarity=0.121  Sum_probs=129.0

Q ss_pred             EEEEccCCCEEEEEeCCCe-------------------EEEEeccCCceeEEeeCCC---------ccEEEEEEecCCC-
Q 006220          426 SASFSPLGDFILSSSADTT-------------------IRLWSTKLNANLVCYKGHN---------YPVWDVQFNPQGH-  476 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~Dg~-------------------I~lwd~~~~~~~~~~~~h~---------~~V~~l~~sp~~~-  476 (656)
                      .++++|++..++.++.++.                   |..||..+++.+..++...         .++.......+|. 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5788898889998888764                   9999999999988776421         1222222233564 


Q ss_pred             --EEEEEECCCcEEEEECCCCceeEEecCCC---------------------------------------CCeeEEEEcC
Q 006220          477 --YFASSSHDRTARIWSMDRIQPLRIMAGHL---------------------------------------SDVDCVRWHI  515 (656)
Q Consensus       477 --~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~---------------------------------------~~V~~v~~~p  515 (656)
                        .++.++.+|.++++|.++++.+.......                                       ..-..++|+|
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp  398 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP  398 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence              78899999999999999998874322100                                       0012378889


Q ss_pred             CCCEEEEEEC---------------------------------------------CCcEEEEeCCCCeeEEEEecCCCCe
Q 006220          516 NCNYIATGSS---------------------------------------------DKTVRLWDVSSGECVRIFIGHRSMI  550 (656)
Q Consensus       516 ~~~~l~tgs~---------------------------------------------dg~V~iwd~~~~~~~~~~~~h~~~i  550 (656)
                      +...+++.+.                                             +|.|+.||+.+|+.+..+..+. ++
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~  477 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IF  477 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SC
T ss_pred             CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-Cc
Confidence            8888877632                                             3779999999999998877554 33


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCc-cEEEEEEcCCCCEEEE
Q 006220          551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS-CVWTLAYSCEGSLLAS  606 (656)
Q Consensus       551 ~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l~s  606 (656)
                      ..-.++..|.++++|+.||.++.||.++|+.+.++....+ ...-+.|..+|+..++
T Consensus       478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            3345666788999999999999999999999988875432 2234667778874433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.75  E-value=1.3e-07  Score=103.44  Aligned_cols=187  Identities=12%  Similarity=0.082  Sum_probs=138.0

Q ss_pred             cCCCEEEEEeC-CCeEEEEeccCCceeEEeeC-CCccEEEEEE-e-cCCCEEEEEE------------------CCCcEE
Q 006220          431 PLGDFILSSSA-DTTIRLWSTKLNANLVCYKG-HNYPVWDVQF-N-PQGHYFASSS------------------HDRTAR  488 (656)
Q Consensus       431 pd~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~-s-p~~~~l~sgs------------------~Dg~i~  488 (656)
                      +||++++.+.. ++.|.+.|+.+.++...+.- .......+++ + |++.++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            47887776655 56799999999998775542 2345778888 5 8999998885                  245799


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCC--------------------------------------cEE
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--------------------------------------TVR  530 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg--------------------------------------~V~  530 (656)
                      ++|.++.+....+.... ....++++|+|+++++.+.+.                                      .|.
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            99999988887776332 457788999999999988553                                      477


Q ss_pred             EEeCCC--Cee-EEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCe------------eeEeeeCCCccEEE
Q 006220          531 LWDVSS--GEC-VRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGR------------CVTPLMGHTSCVWT  594 (656)
Q Consensus       531 iwd~~~--~~~-~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~------------~~~~~~~h~~~V~~  594 (656)
                      +.|.++  +.. ++.+..- ....++.++|||+++++++ .+.+|.++|+.+.+            .+.... -......
T Consensus       258 VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h  335 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLH  335 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEE
T ss_pred             EEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcce
Confidence            778777  544 4444322 3456789999999877765 67899999998653            233332 2345789


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          595 LAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       595 l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      ++|+++|...++.-.|+.|.+||+..
T Consensus       336 ~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          336 TAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEECCCCeEEEEEecCCcEEEEEhhH
Confidence            99999995556677899999999977

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.75  E-value=1.8e-07  Score=96.05  Aligned_cols=183  Identities=14%  Similarity=0.040  Sum_probs=132.8

Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEE
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~  512 (656)
                      +..+..++.++.|..+|.. +.....+..+...+.++...+++. ++.++.++.+..||.. ++....+......+.++.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            5567788888999999998 777666665555667777776776 6667788999999998 777666665556677888


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccE
Q 006220          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV  592 (656)
Q Consensus       513 ~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V  592 (656)
                      ..+++... +++  +.|..|| .+++....+......+.++...++|. |..++.++.|..+| .+++.+..+......+
T Consensus       184 ~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~  257 (330)
T 3hxj_A          184 IGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIE  257 (330)
T ss_dssp             ECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCC
T ss_pred             EcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCcc
Confidence            87777644 444  8899999 78877777766666788888888875 55566778888888 4666666665544444


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220          593 WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       593 ~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                      .++.+.+++. |..++.+|.|..+|. +++....
T Consensus       258 ~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~  289 (330)
T 3hxj_A          258 SSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWN  289 (330)
T ss_dssp             SCCEECTTSC-EEEECTTCEEEEECT-TSCEEEE
T ss_pred             ccceEcCCCe-EEEecCCCCEEEECC-CCcEEEE
Confidence            4566665664 666778888999995 5554433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.70  E-value=6.6e-07  Score=97.97  Aligned_cols=232  Identities=11%  Similarity=0.021  Sum_probs=157.6

Q ss_pred             CCCCEEEEEeC-CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE-c-cCCCEEE
Q 006220          361 QDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-S-PLGDFIL  437 (656)
Q Consensus       361 ~dg~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~-s-pd~~~L~  437 (656)
                      +||++|.+... ++.|.+.|+.......                          ...+ ........+++ + |++++++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~--------------------------ii~i-p~g~~phg~~~~~~p~~~~v~  151 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDA--------------------------ILEI-PNAKGIHGLRPQKWPRSNYVF  151 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEE--------------------------EEEC-SSCCSEEEEEECCSSBCSEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEee--------------------------EEeC-CCCCCCcceeeeecCCCcEEE
Confidence            48888887765 5569999988632211                          0011 12234667777 4 8888888


Q ss_pred             EEe------------------CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC--------------
Q 006220          438 SSS------------------ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--------------  485 (656)
Q Consensus       438 s~s------------------~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg--------------  485 (656)
                      +++                  .++.+.++|..+.+....+.--. .-..++++|+|.++++++.+.              
T Consensus       152 ~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~  230 (595)
T 1fwx_A          152 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM  230 (595)
T ss_dssp             EEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred             EecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence            774                  24689999999888777765322 345688999999998888543              


Q ss_pred             ------------------------cEEEEECCC--Cce-eEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCC
Q 006220          486 ------------------------TARIWSMDR--IQP-LRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG  537 (656)
Q Consensus       486 ------------------------~i~lwd~~~--~~~-~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~  537 (656)
                                              .+.+.|..+  ++. ++.+... ....++.++|+|+++++++ .+.+|.++|+.+.
T Consensus       231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence                                    466777766  444 4444422 3567899999999887765 5789999999865


Q ss_pred             e------------eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC----------CeeeEeeeCCCccE---
Q 006220          538 E------------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPLMGHTSCV---  592 (656)
Q Consensus       538 ~------------~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~----------~~~~~~~~~h~~~V---  592 (656)
                      +            .+.... -......++|+|+|...++...|+.|.+||+..          .+.+.++..|-.+-   
T Consensus       310 ~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~  388 (595)
T 1fwx_A          310 DAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK  388 (595)
T ss_dssp             HHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE
T ss_pred             ccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce
Confidence            3            233332 234578899999995555677899999999977          56677776664432   


Q ss_pred             --EEEEEcCCCCEEEEEEC---CCc----------EEEEeCCCCC
Q 006220          593 --WTLAYSCEGSLLASGSA---DCT----------VKLWDVTTST  622 (656)
Q Consensus       593 --~~l~~s~~~~~l~sgs~---Dg~----------I~iWd~~~~~  622 (656)
                        .++.++|||++|+++..   |..          -.++|+..++
T Consensus       389 ~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          389 TVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             ETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             eccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence              12245899999998863   432          2789995433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.65  E-value=4.4e-06  Score=88.46  Aligned_cols=193  Identities=13%  Similarity=0.174  Sum_probs=134.0

Q ss_pred             EEc--cCCCEEE-EEeCCCeEEEEeccCC----ceeEEee-------CCCccEEEEEEecCCCEEEEEECC------CcE
Q 006220          428 SFS--PLGDFIL-SSSADTTIRLWSTKLN----ANLVCYK-------GHNYPVWDVQFNPQGHYFASSSHD------RTA  487 (656)
Q Consensus       428 ~~s--pd~~~L~-s~s~Dg~I~lwd~~~~----~~~~~~~-------~h~~~V~~l~~sp~~~~l~sgs~D------g~i  487 (656)
                      .++  +++++|+ +|..+++|.++|+.+.    +....+.       .....-..+..+|+| .++++..+      |.+
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            446  7777765 5667889999999755    4444442       111234567888999 66666655      789


Q ss_pred             EEEECCCCceeEEecCCCCC---eeEEEEcCCCCEEEEEE-------------------CCCcEEEEeCCCCeeEEEEec
Q 006220          488 RIWSMDRIQPLRIMAGHLSD---VDCVRWHINCNYIATGS-------------------SDKTVRLWDVSSGECVRIFIG  545 (656)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~---V~~v~~~p~~~~l~tgs-------------------~dg~V~iwd~~~~~~~~~~~~  545 (656)
                      .++|..+.+.+..+......   -..+.|+|+++.+++..                   .+.+|.+||+.+++.+.++..
T Consensus       167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            99999999999888632221   33578899999888874                   368999999999988887764


Q ss_pred             C-C-CCeEEEEE--cCCCCEEEEEE------CCCcEEEEeCCCCee--eEe--eeCC----------------CccEEEE
Q 006220          546 H-R-SMILSLAM--SPDGRYMASGD------EDGTIMMWDLASGRC--VTP--LMGH----------------TSCVWTL  595 (656)
Q Consensus       546 h-~-~~i~~l~~--sp~g~~L~s~~------~dg~I~iwD~~~~~~--~~~--~~~h----------------~~~V~~l  595 (656)
                      - . .....+.|  +|+|+++++++      .+++|.+|....+..  ...  +...                ......+
T Consensus       247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence            2 1 23445555  99999888776      466888776654421  111  1100                1346789


Q ss_pred             EEcCCCCEEEEEEC-CCcEEEEeCCCC
Q 006220          596 AYSCEGSLLASGSA-DCTVKLWDVTTS  621 (656)
Q Consensus       596 ~~s~~~~~l~sgs~-Dg~I~iWd~~~~  621 (656)
                      .+|+||++|.++.. .+.|.++|+...
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEECSST
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            99999999877764 689999999643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.64  E-value=8.8e-06  Score=79.40  Aligned_cols=185  Identities=12%  Similarity=0.022  Sum_probs=130.1

Q ss_pred             cCc--cCEEEEEEccCCCEEEEEeCC--CeEEEEeccCCceeEEeeCCCcc-EEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220          419 GHS--GPVYSASFSPLGDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYP-VWDVQFNPQGHYFASSSHDRTARIWSMD  493 (656)
Q Consensus       419 ~h~--~~V~~l~~spd~~~L~s~s~D--g~I~lwd~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~sgs~Dg~i~lwd~~  493 (656)
                      .|.  .-...+.|++ +.++.+.+.+  +.|+.+|+.+++.+......... --.+.+. .+..+...-.++.+.+||..
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~   93 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLA   93 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred             CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECC
Confidence            454  4567999986 5556666665  48999999999998877643321 1234443 23334444578999999999


Q ss_pred             CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEECC
Q 006220          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      +.+.+..+..... -..++  +++..|+++..++.|.++|..+.+.++.+....     ..++.+.+. +|+..+..-.+
T Consensus        94 tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X           94 TLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             TTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred             cCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence            9999988874322 23443  567777777778899999999999888776422     245667766 66655555568


Q ss_pred             CcEEEEeCCCCeeeEeeeCC------------C-ccEEEEEEcCCCCEEEEEEC
Q 006220          569 GTIMMWDLASGRCVTPLMGH------------T-SCVWTLAYSCEGSLLASGSA  609 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~~h------------~-~~V~~l~~s~~~~~l~sgs~  609 (656)
                      ..|.+.|..+|+.+..+...            . ...+.|+++|+++.|...+.
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            89999999999998877521            1 35689999998776666654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.62  E-value=6e-06  Score=81.28  Aligned_cols=179  Identities=12%  Similarity=0.007  Sum_probs=128.3

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccE--EEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~  499 (656)
                      .-...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -. ...  -.+.+.. +..++..-.++.+.+||..+.+.+.
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence            345788887 3566778888899999999999988776 22 223  3355542 2334444478999999999999998


Q ss_pred             EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMMW  574 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~L~s~~~dg~I~iw  574 (656)
                      .+.... .-..++  +++..|+.+..++.|+++|..+.+.++.+....     ..++.+.|. +|+..+..-.++.|.+.
T Consensus       131 ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          131 TTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             EEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred             EEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence            887432 223444  567888888788999999999999888775422     245667777 77655555568899999


Q ss_pred             eCCCCeeeEeeeCC-------------CccEEEEEEcCCCCEEEEEE
Q 006220          575 DLASGRCVTPLMGH-------------TSCVWTLAYSCEGSLLASGS  608 (656)
Q Consensus       575 D~~~~~~~~~~~~h-------------~~~V~~l~~s~~~~~l~sgs  608 (656)
                      |..+|+.+..+...             ....+.|+|+|+++.|...+
T Consensus       207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            99999988877521             13578999999766555544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.60  E-value=1.8e-05  Score=78.64  Aligned_cols=194  Identities=7%  Similarity=0.007  Sum_probs=130.7

Q ss_pred             eEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          354 LNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~--dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ...++|++|+.+.++.+.  ++.|+++|+.+......                          ..+..+ .....+++. 
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~--------------------------i~l~~~-~fgeGi~~~-   74 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENI--------------------------HKMDDS-YFGEGLTLL-   74 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE--------------------------EECCTT-CCEEEEEEE-
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE--------------------------EecCCC-cceEEEEEe-
Confidence            579999998755555443  68999999876322111                          001111 112245554 


Q ss_pred             CCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC-----
Q 006220          432 LGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL-----  505 (656)
Q Consensus       432 d~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~-----  505 (656)
                       +..| ++.-.++.+.++|..+.+.+..+......-+.  ++++|..++++..++++.++|..+.+.+..+....     
T Consensus        75 -g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~  151 (266)
T 2iwa_A           75 -NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV  151 (266)
T ss_dssp             -TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             -CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence             4444 44556789999999999888887633122233  55577777777778999999999988887766321     


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC-------------CCCeEEEEEcCCCCE-EEEEECCCcE
Q 006220          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------RSMILSLAMSPDGRY-MASGDEDGTI  571 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-------------~~~i~~l~~sp~g~~-L~s~~~dg~I  571 (656)
                      ..++.+.|. ++...+....++.|.+.|..+++.+..+...             ......|+|+|+++. ++++...+.+
T Consensus       152 ~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v  230 (266)
T 2iwa_A          152 IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL  230 (266)
T ss_dssp             CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence            236678887 6644444446789999999999999887632             135689999999865 4555577888


Q ss_pred             EEEeCCCC
Q 006220          572 MMWDLASG  579 (656)
Q Consensus       572 ~iwD~~~~  579 (656)
                      ...++...
T Consensus       231 ~~i~l~~~  238 (266)
T 2iwa_A          231 FEIKLHLV  238 (266)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecc
Confidence            88887543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.55  E-value=9.4e-05  Score=76.99  Aligned_cols=204  Identities=10%  Similarity=-0.029  Sum_probs=131.8

Q ss_pred             ccCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEECCCcEEEEECCCCcee
Q 006220          421 SGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                      ...+.+++|++.+..|+ +-...+.|..+++..................+++.+.+. .+++-...+.|.+.+++.....
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  151 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence            34578999998666555 545678899999886654443333333456889987544 4455556789999998876555


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEE-CC-CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEe
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGS-SD-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWD  575 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs-~d-g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD  575 (656)
                      ..+.........++++|.+..|+.+. .. +.|..+++............-.....|+++|++..|+.+. ..+.|..+|
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~  231 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  231 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence            45545556788999999666665544 44 7888888764333222222334578999998776666554 567899999


Q ss_pred             CCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       576 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      +........+...-....++++ .++.++++-...+.|..++..+++...
T Consensus       232 ~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~  280 (349)
T 3v64_C          232 LDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQE  280 (349)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             CCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccE
Confidence            8643322223233345678888 345566666667888888865555433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.55  E-value=4.6e-06  Score=94.90  Aligned_cols=187  Identities=9%  Similarity=0.068  Sum_probs=130.7

Q ss_pred             CCeEEEEeccCCceeEEeeCC--C-----------------------------ccEEEEEEecCCCEEEEEECCC-----
Q 006220          442 DTTIRLWSTKLNANLVCYKGH--N-----------------------------YPVWDVQFNPQGHYFASSSHDR-----  485 (656)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h--~-----------------------------~~V~~l~~sp~~~~l~sgs~Dg-----  485 (656)
                      +|.|..+|..+++.+..+...  .                             .....+++.|.+..++.++.++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            589999999999988776521  0                             0112468888888888888766     


Q ss_pred             --------------cEEEEECCCCceeEEecC--CC-------CCeeEEEEcCCCC---EEEEEECCCcEEEEeCCCCee
Q 006220          486 --------------TARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINCN---YIATGSSDKTVRLWDVSSGEC  539 (656)
Q Consensus       486 --------------~i~lwd~~~~~~~~~~~~--~~-------~~V~~v~~~p~~~---~l~tgs~dg~V~iwd~~~~~~  539 (656)
                                    .|..+|.++++.+..+..  |.       .+.....+..+|+   .++.++.+|.++++|..+|+.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          399999999998877763  22       2222233334665   688999999999999999998


Q ss_pred             EEEEecCC------------CCe------------------------EEEEEcCCCCEEEEEE-----------------
Q 006220          540 VRIFIGHR------------SMI------------------------LSLAMSPDGRYMASGD-----------------  566 (656)
Q Consensus       540 ~~~~~~h~------------~~i------------------------~~l~~sp~g~~L~s~~-----------------  566 (656)
                      +.......            .++                        ..++++|+...++...                 
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            85433211            000                        1267888766665421                 


Q ss_pred             -------------------CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          567 -------------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       567 -------------------~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                                         .+|.|..||+.+|+.+-+...+. ++....+...+.+++.++.||.|++||..+++.+...
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence                               23789999999999887765432 2233344456788999999999999999999987766


Q ss_pred             cc
Q 006220          628 EE  629 (656)
Q Consensus       628 ~~  629 (656)
                      ..
T Consensus       496 ~~  497 (668)
T 1kv9_A          496 EA  497 (668)
T ss_dssp             EC
T ss_pred             cC
Confidence            44

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.51  E-value=0.00013  Score=77.04  Aligned_cols=204  Identities=10%  Similarity=-0.045  Sum_probs=133.1

Q ss_pred             ccCEEEEEEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCE-EEEEECCCcEEEEECCCCcee
Q 006220          421 SGPVYSASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                      ...+..++|++.+..| ++-...+.|..+++........+.........+++.+.+.. +++-...+.|.+.+++.....
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            3457899999766555 45556788999998866543333333334567899875444 455556788999888766555


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEE-CC-CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEe
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGS-SD-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWD  575 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs-~d-g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iwD  575 (656)
                      ..+.........++++|.+..|+.+. .. +.|..++.............-.....|+|+|++..|+.+ +..+.|..+|
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  274 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence            55555556788999999776666554 33 678888876544333333334457899999876666555 4567899999


Q ss_pred             CCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       576 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      +........+........++++ ..+.++++-...+.|..++..++....
T Consensus       275 ~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~  323 (386)
T 3v65_B          275 LDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQE  323 (386)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             CCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceE
Confidence            8643332223333345678888 345566666677889888866665443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.49  E-value=0.00017  Score=83.77  Aligned_cols=244  Identities=9%  Similarity=0.058  Sum_probs=156.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ...|.++...+++.+.+ |+.++-|.+|+............  .             .. .     ..-....|.++...
T Consensus       214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~--~-------------~~-~-----~~l~~~~i~~i~~d  271 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHS--P-------------SN-P-----KSISSNYIRSLAMD  271 (795)
T ss_dssp             CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCC--T-------------TC-T-----TSCSCSBEEEEEEC
T ss_pred             CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecC--C-------------CC-c-----cccCCCeEEEEEEc
Confidence            45688888888777554 55554588888654211100000  0             00 0     00123569999998


Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeEEeeC-------CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKG-------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-  502 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-  502 (656)
                      ++|.+.+ |+.+ -|.+|+..++........       ....|.++...++|. +..|+.++-|..|+..+........ 
T Consensus       272 ~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~  348 (795)
T 4a2l_A          272 SQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNI  348 (795)
T ss_dssp             TTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCC
T ss_pred             CCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCC
Confidence            8887544 4445 489999876654332211       235699999998876 6667777788999876543222211 


Q ss_pred             -----CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec--------CCCCeEEEEEcCCCCEEEEEECCC
Q 006220          503 -----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--------HRSMILSLAMSPDGRYMASGDEDG  569 (656)
Q Consensus       503 -----~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~--------h~~~i~~l~~sp~g~~L~s~~~dg  569 (656)
                           .....|.++...++|+ |..|+.++-|..||..++........        ....|.+++..++|+.|..|+.++
T Consensus       349 ~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~  427 (795)
T 4a2l_A          349 PYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAG  427 (795)
T ss_dssp             TTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcC
Confidence                 1235688998888776 56688888899999887765443211        235689999988988677788777


Q ss_pred             cEEEEeCCCCeeeEeee----CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          570 TIMMWDLASGRCVTPLM----GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       570 ~I~iwD~~~~~~~~~~~----~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      -|..||..+++...-..    .+...|.++...++|.+.+.. . +.|.+||..++.
T Consensus       428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~  482 (795)
T 4a2l_A          428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRS  482 (795)
T ss_dssp             EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTE
T ss_pred             ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCe
Confidence            79999988775433221    134679999999888866654 4 458889876643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.49  E-value=0.00013  Score=84.84  Aligned_cols=239  Identities=9%  Similarity=-0.016  Sum_probs=157.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ..|.++...++|. |.+|+.++-|..|+............                 ...     ..-....|.++...+
T Consensus       310 ~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~-----------------~~~-----~~l~~~~V~~i~~d~  366 (795)
T 4a2l_A          310 RSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNI-----------------PYK-----NSLSDNVVSCIVEDK  366 (795)
T ss_dssp             SCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCC-----------------TTS-----SSCSCSSEEEEEECT
T ss_pred             CcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCC-----------------CCC-----CCCCCCeeEEEEECC
Confidence            4699999999887 55577878888888653211000000                 000     001235689999888


Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeC--------CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKG--------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-  502 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--------h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-  502 (656)
                      +|. |..|+.++-|..|+..++........        ....|.++...++|..+..|+.++-+.+||..+++...... 
T Consensus       367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~  445 (795)
T 4a2l_A          367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR  445 (795)
T ss_dssp             TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred             CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence            776 55577777799999876654332211        23568999998888867778887889999988765443322 


Q ss_pred             ---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec------CCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 006220          503 ---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG------HRSMILSLAMSPDGRYMASGDEDGTIMM  573 (656)
Q Consensus       503 ---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~------h~~~i~~l~~sp~g~~L~s~~~dg~I~i  573 (656)
                         .....|.++...++|+..+ |+. +-+.+||..+++.......      ....|.++...++|++.+.. . +-|..
T Consensus       446 ~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~  521 (795)
T 4a2l_A          446 NSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSV  521 (795)
T ss_dssp             TSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEE
T ss_pred             CCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEE
Confidence               1345788999888876544 445 4588999888765443221      23578999999988765544 4 45888


Q ss_pred             EeCCCCeeeEeee-------CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          574 WDLASGRCVTPLM-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       574 wD~~~~~~~~~~~-------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ||..+++.  .+.       .....|.++..+++|.+.++.. . -|..||..+..
T Consensus       522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~  573 (795)
T 4a2l_A          522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQ  573 (795)
T ss_dssp             EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTE
T ss_pred             EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCc
Confidence            99877765  222       1235789999999998666543 3 57888876543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.48  E-value=1e-05  Score=93.49  Aligned_cols=239  Identities=9%  Similarity=0.009  Sum_probs=133.7

Q ss_pred             CeEEEEEc-CCCCEEEEEeC-CC----cEEEEEcCCC-CcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          353 GLNCASIS-QDGSLVAGGFS-DS----SLKVWDMAKL-GQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       353 ~V~~l~fs-~dg~~La~g~~-dg----~I~Iwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+...+|| |||++||.+.. +|    .|+++|+.+. ...                        ...   +.   ....
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l------------------------~~~---~~---~~~~  224 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI------------------------ADK---VS---GTNG  224 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC------------------------CCC---EE---EECS
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC------------------------Ccc---cc---Ccee
Confidence            57889999 99999987644 23    4999998752 100                        000   00   1124


Q ss_pred             EEEEccCCCEEEEEeCC-----CeEEEEeccCCce--eEEeeC-CCccEEEEEEecCCCEEEEEEC---CCcEEEEECCC
Q 006220          426 SASFSPLGDFILSSSAD-----TTIRLWSTKLNAN--LVCYKG-HNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDR  494 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~D-----g~I~lwd~~~~~~--~~~~~~-h~~~V~~l~~sp~~~~l~sgs~---Dg~i~lwd~~~  494 (656)
                      +++|+|||+.|+..+.+     ..|.++++.++..  ...+.. ......++.|+|+|++|+..+.   ...|+++|+.+
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            67899999988776665     3588888877642  233332 2334567899999999887663   34688889887


Q ss_pred             Cc-ee--EEec-CCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCeeEEE-EecCCCC--eEEEEEcCCCCEEE
Q 006220          495 IQ-PL--RIMA-GHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRI-FIGHRSM--ILSLAMSPDGRYMA  563 (656)
Q Consensus       495 ~~-~~--~~~~-~~~~~V~~v~~~p~~~~l~tgs~d----g~V~iwd~~~~~~~~~-~~~h~~~--i~~l~~sp~g~~L~  563 (656)
                      +. ..  +.+. ........+.|+..+.+++.+..+    ..|..+|+.++..... +..+...  +..+.+. .+.+++
T Consensus       305 ~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~  383 (751)
T 2xe4_A          305 GNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVV  383 (751)
T ss_dssp             CTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEE
T ss_pred             CCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEE
Confidence            52 22  3333 344445556655444444444433    2577777765322222 3334433  4445544 234555


Q ss_pred             EEECCCc--EEEEeC-------CCCeeeEeeeCC-CccEEEEEE----cCCCC-EEEEEECC---CcEEEEeCCCCC
Q 006220          564 SGDEDGT--IMMWDL-------ASGRCVTPLMGH-TSCVWTLAY----SCEGS-LLASGSAD---CTVKLWDVTTST  622 (656)
Q Consensus       564 s~~~dg~--I~iwD~-------~~~~~~~~~~~h-~~~V~~l~~----s~~~~-~l~sgs~D---g~I~iWd~~~~~  622 (656)
                      +...+|.  |.++|+       ..++.+..+... ...+..+.+    ++++. ++++.+..   +.+..+|+.+++
T Consensus       384 ~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          384 AGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             EEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             EEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            6667775  555564       333313333211 122334433    34554 55554433   457777877654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.47  E-value=8.8e-05  Score=73.20  Aligned_cols=199  Identities=9%  Similarity=0.073  Sum_probs=133.7

Q ss_pred             EeecCccCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220          416 LYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (656)
Q Consensus       416 ~l~~h~~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~  493 (656)
                      .+.+-.+.+..++|+|++..|+ +...++.|...|.. +..+..+.- -....-+|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3445557899999999876554 56778889999988 777766642 23467789999888776766577889999876


Q ss_pred             CCce---eEEec------CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC---CCeeEEEEe-------cCCCCeEEEE
Q 006220          494 RIQP---LRIMA------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SGECVRIFI-------GHRSMILSLA  554 (656)
Q Consensus       494 ~~~~---~~~~~------~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~---~~~~~~~~~-------~h~~~i~~l~  554 (656)
                      ....   +....      ........++|+|.++.|+++.......+|.+.   .+..+..+.       .+...+..++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5442   22221      123456899999999888887766555555543   112222221       1234578999


Q ss_pred             EcCC-CCEEEEEECCCcEEEEeCCCCeeeEeeeCCC---------ccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          555 MSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       555 ~sp~-g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~---------~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      +.|. |++++.......+.++|.. |+.+..+.-..         ..--.|+|.++|++.++ +..+.++++.
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            9995 5566667777889999964 66665554221         25679999999986555 6666555554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.45  E-value=0.00064  Score=69.53  Aligned_cols=201  Identities=8%  Similarity=-0.037  Sum_probs=128.0

Q ss_pred             ccCEEEEEEccCCCEE-EEEeCCCeEEEEeccC----CceeEEeeCCCccEEEEEEecCCC-EEEEEECCCcEEEEECCC
Q 006220          421 SGPVYSASFSPLGDFI-LSSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDR  494 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L-~s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~Dg~i~lwd~~~  494 (656)
                      ...+.+++|++.+..| ++-...+.|..+++..    ......+........++++.+.+. .+++-...+.|.+++.+.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            3567899999876555 4555678999999875    222222322223457899987544 445556778999999886


Q ss_pred             CceeEEecCCCCCeeEEEEcCCCCEEEEEECC--CcEEEEeCCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCCc
Q 006220          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGD-EDGT  570 (656)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d--g~V~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~L~s~~-~dg~  570 (656)
                      ......+.........++++|.+..|+.+...  +.|..+++. |.....+ ...-.....|+++|++..|+.+. ..+.
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~  187 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence            54444444445678899999976666655543  688888875 3333333 23345678999999877666554 5578


Q ss_pred             EEEEeCCCCeeeEee-eC--CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          571 IMMWDLASGRCVTPL-MG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       571 I~iwD~~~~~~~~~~-~~--h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      |..+|+.... ...+ ..  .-....++++. .+.++++-...+.|..++..+++..
T Consensus       188 I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~  242 (316)
T 1ijq_A          188 ISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  242 (316)
T ss_dssp             EEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             EEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence            9999986432 2222 21  22345778885 4556666666788999987666543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.45  E-value=4.1e-05  Score=75.36  Aligned_cols=187  Identities=10%  Similarity=0.123  Sum_probs=124.2

Q ss_pred             eeCCCC--eEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          348 INTHNG--LNCASISQDGSLVAGGFSDS--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       348 ~~~~~~--V~~l~fs~dg~~La~g~~dg--~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      ..|...  ...+.|+ ++.+..+.+.+|  .|+++|+.+.....                            ...- ...
T Consensus        37 ~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~----------------------------~~~l-~~~   86 (262)
T 3nol_A           37 YPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ----------------------------QIEL-GKR   86 (262)
T ss_dssp             EECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE----------------------------EEEC-CTT
T ss_pred             ecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE----------------------------EEec-CCc
Confidence            345443  4788998 677666666665  89999988633211                            1111 122


Q ss_pred             EEEEEEccCCCEEEEE-eCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220          424 VYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       424 V~~l~~spd~~~L~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~  502 (656)
                      .......++++.|... -.++.+.+||..+.+.+..+.... .-+.++  +++..++.+..++.|.++|..+.+.+..+.
T Consensus        87 ~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~  163 (262)
T 3nol_A           87 YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTIT  163 (262)
T ss_dssp             CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEE
T ss_pred             cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEE
Confidence            2222222335555444 458899999999999998887533 224555  467777666667889999999988887766


Q ss_pred             CCC-----CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC------------CCCeEEEEEcCCCCEEEEE
Q 006220          503 GHL-----SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH------------RSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       503 ~~~-----~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h------------~~~i~~l~~sp~g~~L~s~  565 (656)
                      ...     ..++.+.|. +|...+..-.+..|.+.|.++|+.+..+...            ....+.|+|+|+++.|+..
T Consensus       164 V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT  242 (262)
T 3nol_A          164 VTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT  242 (262)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred             eccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence            321     334557776 6754444446889999999999999887642            1346889999998877777


Q ss_pred             ECC
Q 006220          566 DED  568 (656)
Q Consensus       566 ~~d  568 (656)
                      +..
T Consensus       243 GK~  245 (262)
T 3nol_A          243 GKL  245 (262)
T ss_dssp             ETT
T ss_pred             CCC
Confidence            653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.44  E-value=1.7e-05  Score=88.41  Aligned_cols=195  Identities=13%  Similarity=0.073  Sum_probs=130.3

Q ss_pred             CEEEEEeC------CCeEEEEeccCCceeEEeeCCCcc-------------------------------------E-EEE
Q 006220          434 DFILSSSA------DTTIRLWSTKLNANLVCYKGHNYP-------------------------------------V-WDV  469 (656)
Q Consensus       434 ~~L~s~s~------Dg~I~lwd~~~~~~~~~~~~h~~~-------------------------------------V-~~l  469 (656)
                      ..++.++.      ++.|..+|..+++.+..+......                                     + ..+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            34555544      789999999999988766532110                                     1 135


Q ss_pred             EEecCCCEEEEEECC----------------CcEEEEECCCCceeEEecCC--C-------CCeeEEEEcCCCC---EEE
Q 006220          470 QFNPQGHYFASSSHD----------------RTARIWSMDRIQPLRIMAGH--L-------SDVDCVRWHINCN---YIA  521 (656)
Q Consensus       470 ~~sp~~~~l~sgs~D----------------g~i~lwd~~~~~~~~~~~~~--~-------~~V~~v~~~p~~~---~l~  521 (656)
                      ++.+....++.++.+                +.|..+|.++++.+-.+...  .       .....+...++|+   .++
T Consensus       241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~  320 (571)
T 2ad6_A          241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS  320 (571)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred             EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE
Confidence            667766677666532                35999999999988776532  1       1111122234674   577


Q ss_pred             EEECCCcEEEEeCCCCeeEEEEecCC-------------CCe--------------------------EEEEEcCCCCEE
Q 006220          522 TGSSDKTVRLWDVSSGECVRIFIGHR-------------SMI--------------------------LSLAMSPDGRYM  562 (656)
Q Consensus       522 tgs~dg~V~iwd~~~~~~~~~~~~h~-------------~~i--------------------------~~l~~sp~g~~L  562 (656)
                      .++.+|.++++|..+|+.+..+....             .++                          ..++++|+...+
T Consensus       321 ~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~  400 (571)
T 2ad6_A          321 HIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTL  400 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred             EeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEE
Confidence            88899999999999999887654221             111                          235788887777


Q ss_pred             EEEE-------------------------------------CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEE
Q 006220          563 ASGD-------------------------------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA  605 (656)
Q Consensus       563 ~s~~-------------------------------------~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~  605 (656)
                      ++..                                     .+|.|..||..+++.+-++.... .+.+..+...+..++
T Consensus       401 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~  479 (571)
T 2ad6_A          401 YAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVW  479 (571)
T ss_dssp             EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEE
T ss_pred             EEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEE
Confidence            6653                                     34789999999999887765322 222222233456778


Q ss_pred             EEECCCcEEEEeCCCCCceeeccc
Q 006220          606 SGSADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       606 sgs~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      .++.||.|+.||..+++.+.....
T Consensus       480 ~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          480 YATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEcCCCeEEEEECCCCCEEEEEeC
Confidence            899999999999999998876643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.43  E-value=6.2e-05  Score=80.77  Aligned_cols=234  Identities=10%  Similarity=0.071  Sum_probs=138.3

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          353 GLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       353 ~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ....++++| ++..|.++...+.|+.+|+...                             .+..+.........++|++
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-----------------------------~v~~~~~~~~~P~~ia~d~  188 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-----------------------------YVSTVYSGLSKVRTICWTH  188 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-----------------------------EEEEEECCCSCEEEEEECT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-----------------------------EEEEEecCCCCcceEEEeC
Confidence            457889997 3444555444477888887641                             1222223445678999999


Q ss_pred             CCCEEEEEeC-CC----eEEEEeccCCcee--EEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEec-
Q 006220          432 LGDFILSSSA-DT----TIRLWSTKLNANL--VCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMA-  502 (656)
Q Consensus       432 d~~~L~s~s~-Dg----~I~lwd~~~~~~~--~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-  502 (656)
                      ++++|+.+.. ++    .+.+++.. +...  ..+.. .....+++++| +|.++++-..++.|..++.+......... 
T Consensus       189 ~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~  266 (430)
T 3tc9_A          189 EADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI  266 (430)
T ss_dssp             TSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc
Confidence            9996665554 22    23334433 3221  22222 22356789999 67766666677899999998765422222 


Q ss_pred             CCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCC--Cee--EEEEecCC---------------CCeE-EEEEc-----
Q 006220          503 GHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS--GEC--VRIFIGHR---------------SMIL-SLAMS-----  556 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~--~~~--~~~~~~h~---------------~~i~-~l~~s-----  556 (656)
                      +.......++|+|++++|+.+ ...+.|+.++...  +..  +..+.+..               .... .++..     
T Consensus       267 ~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~  346 (430)
T 3tc9_A          267 QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYK  346 (430)
T ss_dssp             SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGT
T ss_pred             CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccc
Confidence            222456789999999966555 4567899987653  322  22232210               1122 44443     


Q ss_pred             ---CCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC---------C---------ccEEEEEEcCC-CCEEEEEECCCcEE
Q 006220          557 ---PDGRYMASGDEDGTIMMWDLASGRCVTPLMGH---------T---------SCVWTLAYSCE-GSLLASGSADCTVK  614 (656)
Q Consensus       557 ---p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h---------~---------~~V~~l~~s~~-~~~l~sgs~Dg~I~  614 (656)
                         ++|.+.++-...+.|+.++ ..|.... +.+.         .         .....++++++ +.++++-...+.|+
T Consensus       347 ~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~-~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr  424 (430)
T 3tc9_A          347 GSSDEYDFYFCDRENHCIRILT-PQGRVTT-FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIR  424 (430)
T ss_dssp             TSSCCEEEEEEEGGGTEEEEEC-TTSEEEE-EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred             ccCCCCeEEEEECCCcEEEEEC-CCCcEEE-EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence               3455555555667888888 4564332 2221         1         14789999994 65666555667788


Q ss_pred             EEeCC
Q 006220          615 LWDVT  619 (656)
Q Consensus       615 iWd~~  619 (656)
                      .+++.
T Consensus       425 ~i~~e  429 (430)
T 3tc9_A          425 KIGYE  429 (430)
T ss_dssp             EEEEC
T ss_pred             EEccC
Confidence            77753

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.39  E-value=3.1e-05  Score=86.55  Aligned_cols=188  Identities=14%  Similarity=0.078  Sum_probs=126.0

Q ss_pred             CCCeEEEEeccCCceeEEeeCCCcc-------------------------------------EE-EEEEecCCCEEEEEE
Q 006220          441 ADTTIRLWSTKLNANLVCYKGHNYP-------------------------------------VW-DVQFNPQGHYFASSS  482 (656)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~~~-------------------------------------V~-~l~~sp~~~~l~sgs  482 (656)
                      .+|.|+.+|..+++.+-.+......                                     +| .+++.+....++.++
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            3799999999999988766532211                                     11 346667777888777


Q ss_pred             CC----------------CcEEEEECCCCceeEEecCCCCC---------eeEEEEc-CCC---CEEEEEECCCcEEEEe
Q 006220          483 HD----------------RTARIWSMDRIQPLRIMAGHLSD---------VDCVRWH-INC---NYIATGSSDKTVRLWD  533 (656)
Q Consensus       483 ~D----------------g~i~lwd~~~~~~~~~~~~~~~~---------V~~v~~~-p~~---~~l~tgs~dg~V~iwd  533 (656)
                      .+                +.|..+|.++++.+-.+......         ..-+... .+|   ..++.++.+|.++++|
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD  339 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD  339 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEE
Confidence            65                37999999999988776632211         1112222 467   5677789999999999


Q ss_pred             CCCCeeEEEEecCC-------------CCe--------------------------EEEEEcCCCCEEEEEE--------
Q 006220          534 VSSGECVRIFIGHR-------------SMI--------------------------LSLAMSPDGRYMASGD--------  566 (656)
Q Consensus       534 ~~~~~~~~~~~~h~-------------~~i--------------------------~~l~~sp~g~~L~s~~--------  566 (656)
                      ..+|+.+.......             .++                          ..++++|+..++++..        
T Consensus       340 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~  419 (599)
T 1w6s_A          340 RTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWE  419 (599)
T ss_dssp             TTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred             CCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeee
Confidence            99999887654211             111                          2356777766655431        


Q ss_pred             -------------------------------CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEE
Q 006220          567 -------------------------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL  615 (656)
Q Consensus       567 -------------------------------~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i  615 (656)
                                                     ..|.|.-||+.+|+.+-+.... .++.+-.....+.+++.++.||.|+.
T Consensus       420 ~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A  498 (599)
T 1w6s_A          420 PFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKA  498 (599)
T ss_dssp             ECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred             cccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEE
Confidence                                           3478999999999887666421 11111112234667888999999999


Q ss_pred             EeCCCCCceeeccc
Q 006220          616 WDVTTSTKVLKTEE  629 (656)
Q Consensus       616 Wd~~~~~~~~~~~~  629 (656)
                      ||..+++.+.+...
T Consensus       499 ~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          499 RDSDTGDLLWKFKI  512 (599)
T ss_dssp             EETTTCCEEEEEEC
T ss_pred             EECCCCCEEEEeeC
Confidence            99999998877643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.38  E-value=6e-05  Score=77.24  Aligned_cols=193  Identities=12%  Similarity=0.040  Sum_probs=125.1

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC--------------------CCccEEEEEEecCCCEEEEEE
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--------------------HNYPVWDVQFNPQGHYFASSS  482 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--------------------h~~~V~~l~~sp~~~~l~sgs  482 (656)
                      ...+++|++++++++++..++.|..|+..++... .+..                    ....+.++++.+++..|+++.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            3457889999988888888999999998765432 2211                    012468899998333455565


Q ss_pred             CCCcEEEEECCCCceeEEecC-----CCCCeeEEEEcC-CCCEEEEEEC-----------------CCcEEEEeCCCCee
Q 006220          483 HDRTARIWSMDRIQPLRIMAG-----HLSDVDCVRWHI-NCNYIATGSS-----------------DKTVRLWDVSSGEC  539 (656)
Q Consensus       483 ~Dg~i~lwd~~~~~~~~~~~~-----~~~~V~~v~~~p-~~~~l~tgs~-----------------dg~V~iwd~~~~~~  539 (656)
                      ..+.+..+|..++.. ..+..     .......+++.+ +|+..++...                 ++.|..||..+++.
T Consensus        99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            556688888765432 22221     123467899999 8976666432                 36789999877765


Q ss_pred             EEEEecCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCe--eeEeeeCCCccEEEEEEcCCCCEEEEEEC-------
Q 006220          540 VRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGSA-------  609 (656)
Q Consensus       540 ~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iwD~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~sgs~-------  609 (656)
                      ...... ......|+++|+|++|+.+ +..+.|..|++....  ....+....+ ...++++++|+++++...       
T Consensus       178 ~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~  255 (322)
T 2fp8_A          178 TLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH  255 (322)
T ss_dssp             EEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred             EEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence            433222 2334679999999876665 456899999986421  1111111223 788999999997777654       


Q ss_pred             ---CCcEEEEeCC
Q 006220          610 ---DCTVKLWDVT  619 (656)
Q Consensus       610 ---Dg~I~iWd~~  619 (656)
                         .+.|..+|..
T Consensus       256 ~~~~~~v~~~d~~  268 (322)
T 2fp8_A          256 GRVDPKGIKFDEF  268 (322)
T ss_dssp             SCEEEEEEEECTT
T ss_pred             CCCccEEEEECCC
Confidence               4567777753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.35  E-value=9.1e-06  Score=93.85  Aligned_cols=192  Identities=13%  Similarity=0.119  Sum_probs=117.3

Q ss_pred             CEEEEEEc-cCCCEEEEEeC-C----CeEEEEeccCC-ceeEE-eeCCCccEEEEEEecCCCEEEEEECC-----CcEEE
Q 006220          423 PVYSASFS-PLGDFILSSSA-D----TTIRLWSTKLN-ANLVC-YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARI  489 (656)
Q Consensus       423 ~V~~l~~s-pd~~~L~s~s~-D----g~I~lwd~~~~-~~~~~-~~~h~~~V~~l~~sp~~~~l~sgs~D-----g~i~l  489 (656)
                      .+...+|| |||++|+.+.. +    .+|+++|+.++ +.+.. +.   ....+++|+|+|+.|+....|     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57789999 99998874433 2    35999999988 53211 11   113468899999888877765     36888


Q ss_pred             EECCCCce--eEEec-CCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCC--ee-EEEE-ecCCCCeEEEEEcCCC
Q 006220          490 WSMDRIQP--LRIMA-GHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSG--EC-VRIF-IGHRSMILSLAMSPDG  559 (656)
Q Consensus       490 wd~~~~~~--~~~~~-~~~~~V~~v~~~p~~~~l~tgs~---dg~V~iwd~~~~--~~-~~~~-~~h~~~i~~l~~sp~g  559 (656)
                      +++.++..  ...+. ........+.|+|+|++|+..+.   ...|+++|+.++  .. ++.+ ........++.|+..+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            88877642  23333 22234567899999999887653   346888999875  23 1333 3344555666655444


Q ss_pred             CEEEEEECC----CcEEEEeCCCCeeeEe-eeCCCc--cEEEEEEcCCCCEEEEEECCCc--EEEEeC
Q 006220          560 RYMASGDED----GTIMMWDLASGRCVTP-LMGHTS--CVWTLAYSCEGSLLASGSADCT--VKLWDV  618 (656)
Q Consensus       560 ~~L~s~~~d----g~I~iwD~~~~~~~~~-~~~h~~--~V~~l~~s~~~~~l~sgs~Dg~--I~iWd~  618 (656)
                      .+++....+    ..|..+|+.++..... +..|..  .+.++.+. .+.++++...+|.  |.++++
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            444444433    3677778765322222 333433  45566665 3445666777776  445554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.33  E-value=0.00018  Score=77.20  Aligned_cols=235  Identities=10%  Similarity=0.078  Sum_probs=139.4

Q ss_pred             CeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          353 GLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       353 ~V~~l~fs~d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ...+++|+|+  ...|.++...+.|+.++....                             ....+........+++|+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-----------------------------~v~~~~~~~~~P~giavd  190 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-----------------------------YVDIKTTNIGQCADVNFT  190 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT-----------------------------EEEEECCCCSCEEEEEEC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCC-----------------------------EEEEeecCCCCccEEEEC
Confidence            3568899984  334444433388988887531                             122222334568899999


Q ss_pred             cCCCEEEEEeCC---C-eEEEEeccCCce-eEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCceeEE-ec-
Q 006220          431 PLGDFILSSSAD---T-TIRLWSTKLNAN-LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRI-MA-  502 (656)
Q Consensus       431 pd~~~L~s~s~D---g-~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~~~~~-~~-  502 (656)
                      ++++++++....   . .+...+...+.. ...+. .......++++| +|.++++-..++.|+.++..++..... +. 
T Consensus       191 ~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~  269 (433)
T 4hw6_A          191 LNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM  269 (433)
T ss_dssp             TTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC
T ss_pred             CCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc
Confidence            999944444321   1 233333332211 01111 223346788999 676666666778899999886655222 22 


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC--CCee--EEEEecC---------------CCCeEEEEE-------
Q 006220          503 GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS--SGEC--VRIFIGH---------------RSMILSLAM-------  555 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~--~~~~--~~~~~~h---------------~~~i~~l~~-------  555 (656)
                      +....-..++|+|++++|+.+. ..+.|+.++..  ++..  ...+.+.               -.....+++       
T Consensus       270 ~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~  349 (433)
T 4hw6_A          270 DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA  349 (433)
T ss_dssp             SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred             CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence            2222234699999999666554 56789998865  3321  1223222               123567899       


Q ss_pred             --cCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC------------------CccEEEEEEc-CCCCEEEEEECCCcEE
Q 006220          556 --SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH------------------TSCVWTLAYS-CEGSLLASGSADCTVK  614 (656)
Q Consensus       556 --sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h------------------~~~V~~l~~s-~~~~~l~sgs~Dg~I~  614 (656)
                        .++|.+.++-...+.|+.++. .|.. ..+.+.                  -.....|+++ +++.++++-...+.|+
T Consensus       350 ~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr  427 (433)
T 4hw6_A          350 GEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVR  427 (433)
T ss_dssp             TSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred             ccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence              677777777667788999984 5643 333221                  0236789999 5676666666677888


Q ss_pred             EEeCC
Q 006220          615 LWDVT  619 (656)
Q Consensus       615 iWd~~  619 (656)
                      .++++
T Consensus       428 ~i~~e  432 (433)
T 4hw6_A          428 KIAPE  432 (433)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            87753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.33  E-value=0.00027  Score=73.53  Aligned_cols=210  Identities=7%  Similarity=-0.065  Sum_probs=131.5

Q ss_pred             eeCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          348 INTHNGLNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      .........++|++.... .++-...+.|..+++.....                            ............+
T Consensus        69 ~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----------------------------~~~~~~~~~~p~g  120 (349)
T 3v64_C           69 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----------------------------EEVVSTGLESPGG  120 (349)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------------EEEECSSCSCCCE
T ss_pred             ecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc----------------------------eEEEeCCCCCccE
Confidence            344456889999976554 45555678888888764211                            0111111233467


Q ss_pred             EEEccCCCE-EEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE-ECC-CcEEEEECCCCceeEEecC
Q 006220          427 ASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHD-RTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       427 l~~spd~~~-L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~D-g~i~lwd~~~~~~~~~~~~  503 (656)
                      +++.+.+.. +++-...+.|.+.+++................++++.|.+..++.+ ... +.|..++++..........
T Consensus       121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  200 (349)
T 3v64_C          121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT  200 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred             EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence            888875554 4555667889999988554444343334456899999965555444 444 7888888876443333333


Q ss_pred             CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220          504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      .......++++|++..|+.+. ..+.|..+|+........+.........|++. .+..+++-...+.|..++..+|+.+
T Consensus       201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCcc
Confidence            445678999998776666554 46789999987544333333334556778873 4555556556788888886677665


Q ss_pred             Eeee
Q 006220          583 TPLM  586 (656)
Q Consensus       583 ~~~~  586 (656)
                      ..+.
T Consensus       280 ~~i~  283 (349)
T 3v64_C          280 EIIR  283 (349)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            5554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.32  E-value=0.0011  Score=70.28  Aligned_cols=206  Identities=9%  Similarity=-0.045  Sum_probs=134.0

Q ss_pred             cCccCEEEEEEccCCCEEE-EEeCCCeEEEEeccCC----ceeEEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEEC
Q 006220          419 GHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSM  492 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~  492 (656)
                      .....+..++|++.+..|+ +-...+.|+.+++...    .....+.........+++.+. ++++++-...+.|.+.++
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~  188 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  188 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence            3456788999998666555 4456788999998752    223333333445778999884 555555556789999999


Q ss_pred             CCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCC
Q 006220          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDG  569 (656)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg  569 (656)
                      +.......+.........++++|.+.+|+.+..  .+.|...++............-.....|++++++..|+.+. ..+
T Consensus       189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~  268 (400)
T 3p5b_L          189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  268 (400)
T ss_dssp             TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence            876655555555566889999997766666542  37899998865444333333345678999998877776664 467


Q ss_pred             cEEEEeCCCCeeeEeeeC--CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          570 TIMMWDLASGRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       570 ~I~iwD~~~~~~~~~~~~--h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      .|..+|+...........  .-....++++. .+.++++-...+.|..+|..+++...
T Consensus       269 ~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~  325 (400)
T 3p5b_L          269 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN  325 (400)
T ss_dssp             EEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred             EEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceE
Confidence            899999864433222222  22345677773 34556666667889999976665543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.32  E-value=0.00055  Score=67.46  Aligned_cols=197  Identities=13%  Similarity=0.128  Sum_probs=125.2

Q ss_pred             eCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          349 NTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       349 ~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      +..+.+..++|+|++. +.|+...++.|...|... ...                          ....+.+ ....-.|
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~v~--------------------------~~i~l~g-~~D~EGI   75 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-DLI--------------------------RTIPLDF-VKDLETI   75 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-CEE--------------------------EEEECSS-CSSEEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-CEE--------------------------EEEecCC-CCChHHe
Confidence            4456799999999865 455577778888777652 100                          0111122 2456778


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeccCCcee---EEee------CCCccEEEEEEecCCCEEEEEECCCcEEEEECC---CC
Q 006220          428 SFSPLGDFILSSSADTTIRLWSTKLNANL---VCYK------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---RI  495 (656)
Q Consensus       428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~---~~~~------~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~---~~  495 (656)
                      ++.+++.++++.-.++.+.++++.....+   ....      ..+.....++|+|.++.|+++.......+|.++   ..
T Consensus        76 a~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~  155 (255)
T 3qqz_A           76 EYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS  155 (255)
T ss_dssp             EECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS
T ss_pred             EEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC
Confidence            88888887777667788999988755432   2221      124456899999998887777765555555543   11


Q ss_pred             ceeEEec-------CCCCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCeeEEEEecCC---------CCeEEEEEcCC
Q 006220          496 QPLRIMA-------GHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHR---------SMILSLAMSPD  558 (656)
Q Consensus       496 ~~~~~~~-------~~~~~V~~v~~~p~~~~l-~tgs~dg~V~iwd~~~~~~~~~~~~h~---------~~i~~l~~sp~  558 (656)
                      ..+..+.       .+...+.+++++|....+ +.+...+.+..+|.. |+.+..+.-..         ...-.|+|.++
T Consensus       156 ~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~  234 (255)
T 3qqz_A          156 NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS  234 (255)
T ss_dssp             SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTT
T ss_pred             CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCC
Confidence            2233321       234568899999966555 455566788899965 66665554322         25678999999


Q ss_pred             CCEEEEEECCCcEEEEe
Q 006220          559 GRYMASGDEDGTIMMWD  575 (656)
Q Consensus       559 g~~L~s~~~dg~I~iwD  575 (656)
                      |++.++ ++-+.++.+.
T Consensus       235 G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          235 GNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             CCEEEE-ETTTEEEEEE
T ss_pred             CCEEEE-cCCceEEEEE
Confidence            984444 6767666664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.27  E-value=1.5e-05  Score=90.46  Aligned_cols=242  Identities=11%  Similarity=0.041  Sum_probs=138.6

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          356 CASISQ-DGSLVAGGFSDS-----------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       356 ~l~fs~-dg~~La~g~~dg-----------~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      ++++.+ ++++++.|+.+.           .+.+||..+.....                         .......+...
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-------------------------~~~~~~~~~~~  244 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-------------------------RTVTVTKHDMF  244 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-------------------------CEEEECSCCCS
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe-------------------------CcccCCCCCCc
Confidence            556667 889998887543           46777765421110                         01111123333


Q ss_pred             EEEEEEccCCCEEEEEeC-CCeEEEEeccCCceeEEeeCCCc-cEEEEEEecCCCEEEEEE-CC-----CcEEEEECCCC
Q 006220          424 VYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASSS-HD-----RTARIWSMDRI  495 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp~~~~l~sgs-~D-----g~i~lwd~~~~  495 (656)
                      ..++++..+++.++.|+. ++.+.+||..+.+-...-..+.. .-.+++..+++..++.|+ .+     ..+.+||..+.
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            445677889999998884 45899999886643322111111 113456667899999998 44     57899999876


Q ss_pred             ceeEEe----cCCCCCeeEEEEcCCCCEEEEEECCC---------cEEEEeCCCCeeEEEEecCCC---------CeEEE
Q 006220          496 QPLRIM----AGHLSDVDCVRWHINCNYIATGSSDK---------TVRLWDVSSGECVRIFIGHRS---------MILSL  553 (656)
Q Consensus       496 ~~~~~~----~~~~~~V~~v~~~p~~~~l~tgs~dg---------~V~iwd~~~~~~~~~~~~h~~---------~i~~l  553 (656)
                      +-...-    ......-....+..++..++.|+.+|         .+..||..+.........+..         .-.++
T Consensus       325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av  404 (656)
T 1k3i_A          325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV  404 (656)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred             cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence            533320    00000000011224455555555443         567889887764433322211         23444


Q ss_pred             EEcC-CCCEEEEEECCC-----------cEEEEeCCCCeeeEee--eCCCccE-EEEEEcCCCCEEEEEECC--------
Q 006220          554 AMSP-DGRYMASGDEDG-----------TIMMWDLASGRCVTPL--MGHTSCV-WTLAYSCEGSLLASGSAD--------  610 (656)
Q Consensus       554 ~~sp-~g~~L~s~~~dg-----------~I~iwD~~~~~~~~~~--~~h~~~V-~~l~~s~~~~~l~sgs~D--------  610 (656)
                      .|.. ++++++.|+.++           .|.+||..+.......  ..+.... .+.+..+++++++.||.+        
T Consensus       405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~  484 (656)
T 1k3i_A          405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS  484 (656)
T ss_dssp             EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred             eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence            4543 678888887543           6888888776543322  1122222 344567899999999864        


Q ss_pred             ---CcEEEEeCCCCC
Q 006220          611 ---CTVKLWDVTTST  622 (656)
Q Consensus       611 ---g~I~iWd~~~~~  622 (656)
                         ..+.+||..+.+
T Consensus       485 ~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          485 TPVFTPEIYVPEQDT  499 (656)
T ss_dssp             SBCCCCEEEEGGGTE
T ss_pred             CcccceEEEcCCCCc
Confidence               468999987654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.27  E-value=0.00017  Score=80.52  Aligned_cols=160  Identities=15%  Similarity=0.148  Sum_probs=106.9

Q ss_pred             EEEecCCCEEEEEEC--------------------C----CcEEEEECCCCceeEEecC--CCC-------CeeEEEEc-
Q 006220          469 VQFNPQGHYFASSSH--------------------D----RTARIWSMDRIQPLRIMAG--HLS-------DVDCVRWH-  514 (656)
Q Consensus       469 l~~sp~~~~l~sgs~--------------------D----g~i~lwd~~~~~~~~~~~~--~~~-------~V~~v~~~-  514 (656)
                      +++.|....++.++.                    |    +.|..+|.++++.+-.+..  |..       ...-+... 
T Consensus       251 ~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~  330 (582)
T 1flg_A          251 ASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKA  330 (582)
T ss_dssp             CEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEEC
T ss_pred             ceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeec
Confidence            466777777777663                    2    5899999999998877652  311       11112222 


Q ss_pred             CCCC---EEEEEECCCcEEEEeCCCCeeEEEEecCC-------------CCe----------------------------
Q 006220          515 INCN---YIATGSSDKTVRLWDVSSGECVRIFIGHR-------------SMI----------------------------  550 (656)
Q Consensus       515 p~~~---~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-------------~~i----------------------------  550 (656)
                      .+|+   .++.++.+|.++++|..+|+.+..+....             .++                            
T Consensus       331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G  410 (582)
T 1flg_A          331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG  410 (582)
T ss_dssp             SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred             CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence            4664   78889999999999999999887665331             000                            


Q ss_pred             ----EEEEEcCCCCEEEEEE---------------------------------CCCcEEEEeCCCCeeeEeeeCCCccEE
Q 006220          551 ----LSLAMSPDGRYMASGD---------------------------------EDGTIMMWDLASGRCVTPLMGHTSCVW  593 (656)
Q Consensus       551 ----~~l~~sp~g~~L~s~~---------------------------------~dg~I~iwD~~~~~~~~~~~~h~~~V~  593 (656)
                          ..++++|+...+++..                                 .+|.|.-||+.+|+.+-+..... ++.
T Consensus       411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~  489 (582)
T 1flg_A          411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLW  489 (582)
T ss_dssp             SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCC
T ss_pred             ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCc
Confidence                1346676655554432                                 25789999999999887665322 121


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220          594 TLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       594 ~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      +-.....+.+++.|+.||.++.||..+++.+.+...
T Consensus       490 ~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          490 AGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            111222466888899999999999999999877654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.27  E-value=0.00011  Score=72.21  Aligned_cols=180  Identities=9%  Similarity=0.033  Sum_probs=121.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      ...+.|+ ++.+..+.+.+|.|+++|+.+.....                         ..  +.. .----.+++.. +
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~-------------------------~~--l~~-~~FgeGit~~g-~  106 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVW-------------------------ME--RLG-NIFAEGLASDG-E  106 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSE-------------------------EE--ECT-TCCEEEEEECS-S
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEe-------------------------EE--CCC-CcceeEEEEeC-C
Confidence            5788887 46677777788999999987633211                         11  111 11112244432 2


Q ss_pred             CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC-----CCe
Q 006220          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL-----SDV  508 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~-----~~V  508 (656)
                      +..++.-.++.+.+||..+.+.+..+.... .-|.+++  ++..|+.+..++.|.++|..+.+.+..+....     ..+
T Consensus       107 ~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~l  183 (268)
T 3nok_A          107 RLYQLTWTEGLLFTWSGMPPQRERTTRYSG-EGWGLCY--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELI  183 (268)
T ss_dssp             CEEEEESSSCEEEEEETTTTEEEEEEECSS-CCCCEEE--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             EEEEEEccCCEEEEEECCcCcEEEEEeCCC-ceeEEec--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence            333445568899999999999998887532 3356664  57777777778999999999998887776321     234


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC-------------CCCeEEEEEcCCCCEEEEEEC
Q 006220          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------RSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-------------~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      +.+.|. +|...+..-.+..|.+.|.++|+.+..+...             ..-.+.|+++|+++.|+..+.
T Consensus       184 NeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          184 NELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             cccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            667776 6754444446789999999999998877531             135688999998766655553

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.26  E-value=4.3e-05  Score=86.88  Aligned_cols=153  Identities=10%  Similarity=0.118  Sum_probs=105.9

Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeEEeeCCCc-cEEEEEEec--CCCEEEEEEC------CCcEEEEECCCCceeEEecC
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNP--QGHYFASSSH------DRTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp--~~~~l~sgs~------Dg~i~lwd~~~~~~~~~~~~  503 (656)
                      +..++.++.|+.|..+|..+++.+..+..... ....+..+|  .+..+++++.      +|.|+.+|..+++.+..+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            46788888999999999999998877664211 000111111  1334555543      58999999999998876642


Q ss_pred             C---C----------------------------CCeeEEEEcCCCCEEEEEECCC-------------------cEEEEe
Q 006220          504 H---L----------------------------SDVDCVRWHINCNYIATGSSDK-------------------TVRLWD  533 (656)
Q Consensus       504 ~---~----------------------------~~V~~v~~~p~~~~l~tgs~dg-------------------~V~iwd  533 (656)
                      .   .                            .....+++.|....++.++.++                   .|.-+|
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence            1   0                            0112468888888998888776                   399999


Q ss_pred             CCCCeeEEEEec--CC-------CCeEEEEEcCCCC---EEEEEECCCcEEEEeCCCCeeeEee
Q 006220          534 VSSGECVRIFIG--HR-------SMILSLAMSPDGR---YMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       534 ~~~~~~~~~~~~--h~-------~~i~~l~~sp~g~---~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      ..+|+.+..+..  |.       .+.....+..+|+   .++.++.+|.++++|..+|+.+...
T Consensus       277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence            999999988764  22       2333333444675   7889999999999999999988543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.26  E-value=0.0008  Score=68.93  Aligned_cols=203  Identities=8%  Similarity=-0.014  Sum_probs=130.4

Q ss_pred             cCEEEEEEccCCCE-EEEEeCCCeEEEEeccCCcee-EEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCCcee
Q 006220          422 GPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPL  498 (656)
Q Consensus       422 ~~V~~l~~spd~~~-L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~~~~  498 (656)
                      ..+.++.|++.+.. +++-...+.|..++....... ......-....++++.+. +..+++-...+.|.+++++.....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            45678999986554 455566788999998865321 222222234567889874 445555556789999998865544


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEe
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWD  575 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD  575 (656)
                      ..+.........++++|.+..|+.+..  .+.|...++............-.....|+++|++..|+.+. ..+.|..+|
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            444455567889999997666666552  57888888764333222223334568999999766666554 567899999


Q ss_pred             CCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       576 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      +..........+......++++. .+.++++-...+.|..++..+++...
T Consensus       195 ~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~  243 (318)
T 3sov_A          195 LDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLR  243 (318)
T ss_dssp             TTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             CCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceE
Confidence            86433222222233456778875 34455665567889999987766543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.25  E-value=0.00038  Score=73.47  Aligned_cols=221  Identities=6%  Similarity=-0.062  Sum_probs=138.0

Q ss_pred             eeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          348 INTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      .........++|++.+. ++++-...+.|..+++.....                            .............
T Consensus       112 ~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----------------------------~~~~~~~~~~p~g  163 (386)
T 3v65_B          112 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----------------------------EEVVSTGLESPGG  163 (386)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE----------------------------EEEECSSCSCCCC
T ss_pred             ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc----------------------------EEEEeCCCCCccE
Confidence            34445688999997544 455555678888888764211                            0111111223456


Q ss_pred             EEEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CC-CcEEEEECCCCceeEEecC
Q 006220          427 ASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HD-RTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       427 l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~D-g~i~lwd~~~~~~~~~~~~  503 (656)
                      +++.+.+..| ++-...+.|.+.+++.................+++.|.+..++.+. .. +.|..++++..........
T Consensus       164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  243 (386)
T 3v65_B          164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT  243 (386)
T ss_dssp             EEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence            7888755544 5555677899998875544444443445578999998766555554 44 6888888876554444444


Q ss_pred             CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220          504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      .......++|+|++..|+.+. ..+.|..+|+........+.........|++ ..+.++++-...+.|..+|..+|+.+
T Consensus       244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcce
Confidence            455678999998766666554 5678999998654433334333445677888 34556666667788988887777766


Q ss_pred             EeeeCCCccEEEEEE
Q 006220          583 TPLMGHTSCVWTLAY  597 (656)
Q Consensus       583 ~~~~~h~~~V~~l~~  597 (656)
                      ..+........++++
T Consensus       323 ~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          323 EIIRNKLHFPMDIHT  337 (386)
T ss_dssp             EEEECSCSCCCCEEE
T ss_pred             EEEccCCCCCceEEE
Confidence            666543333344443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.22  E-value=0.0023  Score=67.68  Aligned_cols=226  Identities=8%  Similarity=0.023  Sum_probs=142.4

Q ss_pred             EeeCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          347 FINTHNGLNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      +......+..++|++.+.. .++-...+.|+.+++......                        ...............
T Consensus       107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~------------------------~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L          107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPD  162 (400)
T ss_dssp             EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------------------------CCCEEEECSSCSCEE
T ss_pred             eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC------------------------CcceEEEeCCCCCcc
Confidence            3445567899999986554 445556778888887631100                        001111222334677


Q ss_pred             EEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC--CCcEEEEECCCCceeEEec
Q 006220          426 SASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       426 ~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~--Dg~i~lwd~~~~~~~~~~~  502 (656)
                      .+++.+.+. +.++-...+.|.+.+++.......+.........|++.|.+.+|+....  .+.|...+++.........
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~  242 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  242 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence            889987544 4555566789999999865554444444445789999996666555542  4789999988665555555


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEec--CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          503 GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                      ........+++++.+..|+.+. ..+.|..+|+...........  .......|++. .+.++++-...+.|..+|..+|
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence            4556788999998777776664 467899999865443333332  22345567763 3455556667788999998788


Q ss_pred             eeeEeeeCCCccEEEEEE
Q 006220          580 RCVTPLMGHTSCVWTLAY  597 (656)
Q Consensus       580 ~~~~~~~~h~~~V~~l~~  597 (656)
                      +.+..+........++..
T Consensus       322 ~~~~~i~~~~~~p~~i~v  339 (400)
T 3p5b_L          322 SDVNLLAENLLSPEDMVL  339 (400)
T ss_dssp             CCCEEEECSCSCEEEEEE
T ss_pred             CceEEEecCCCCCceEEE
Confidence            777766544444555543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.22  E-value=0.0005  Score=66.96  Aligned_cols=181  Identities=10%  Similarity=0.016  Sum_probs=119.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          353 GLNCASISQDGSLVAGGFSD--SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~d--g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      -...+.|++ +.+..+.+..  +.|+++|+.+......                          ..+..+. ---.+++.
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~--------------------------~~l~~~~-fgeGi~~~   73 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQR--------------------------AEVPPPY-FGAGIVAW   73 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEE--------------------------EECCTTC-CEEEEEEE
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEE--------------------------EeCCCCc-ceeEEEEe
Confidence            367889987 5555555554  5899999986332111                          1111110 01123333


Q ss_pred             cCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC----
Q 006220          431 PLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL----  505 (656)
Q Consensus       431 pd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~----  505 (656)
                        ++.| ...-.++.+.+||..+.+.+..+.... .-|.++  +++..|+.+..++.|.++|..+.+.++.+....    
T Consensus        74 --~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~  148 (243)
T 3mbr_X           74 --RDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP  148 (243)
T ss_dssp             --TTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred             --CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc
Confidence              4444 445568899999999999998887543 335665  456666666678899999999998887776322    


Q ss_pred             -CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC-------------CCCeEEEEEcCCCCEEEEEEC
Q 006220          506 -SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------RSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       506 -~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-------------~~~i~~l~~sp~g~~L~s~~~  567 (656)
                       ..++.+.|. +|...+..-.+..|.+.|.++|+.+..+...             ..-.+.|+++|+++.|+..+.
T Consensus       149 ~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          149 LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence             245566665 6655544446789999999999998887521             124688999998877776664

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.19  E-value=0.00055  Score=79.28  Aligned_cols=245  Identities=12%  Similarity=0.048  Sum_probs=152.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ...|.++...++|. |.+|+.++-|..|+............               +..    .....-....|.++...
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~---------------~~~----~~~~~l~~~~v~~i~~d  371 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYS---------------PTQ----MNESSLSNKVVSSVCDD  371 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC-------------------C----CCSSCCSSSCEEEEEEC
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccC---------------ccc----cccCCCCCcceEEEEEc
Confidence            34689999988887 55677777788888653211100000               000    00000123568999988


Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeEEe---eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--CCC
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHL  505 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~~~  505 (656)
                      ++|. |..|+.++-|..|+..++......   ......|+++...++|. |..|+.++-+..++..+++......  ...
T Consensus       372 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~  449 (781)
T 3v9f_A          372 GQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNEL  449 (781)
T ss_dssp             TTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCC
T ss_pred             CCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCC
Confidence            7776 555665566999987654321111   12345788998887776 4557776778999887664333221  134


Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC-----CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 006220          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-----~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~  580 (656)
                      ..|.++...+++. |..|+. +-|..||..+++........     ...|.++...++|.+.+ |+.++-|..||..+++
T Consensus       450 ~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          450 LDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             CCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred             CeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence            6788998888775 555665 56889998877655433322     35789999998887554 4443447789987664


Q ss_pred             eeEeeeC----CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          581 CVTPLMG----HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       581 ~~~~~~~----h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      .. .+..    ....|.++...++|.+.++. .+|.|..||..+..
T Consensus       527 ~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          527 VR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFD  570 (781)
T ss_dssp             EE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred             EE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCc
Confidence            33 3321    23578999999998866654 46655888876654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.18  E-value=0.0006  Score=69.25  Aligned_cols=193  Identities=11%  Similarity=0.058  Sum_probs=122.1

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC--cEEEEECCCCceeE
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLR  499 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg--~i~lwd~~~~~~~~  499 (656)
                      ....+++|+++++++++...++.|..||.... ....+. ......++++.++|+++++.....  .|..++..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            56778999999997777778899999998753 333333 234678999999998666554332  46677777665443


Q ss_pred             Eec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EEEEec---------CCCCeEEEEEcCCCCEEEEE-EC
Q 006220          500 IMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIG---------HRSMILSLAMSPDGRYMASG-DE  567 (656)
Q Consensus       500 ~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~~~~~---------h~~~i~~l~~sp~g~~L~s~-~~  567 (656)
                      ... ........++..+.+..+++...++.|+.+|..++.. +....+         .-.....|  +|++++|+.+ ..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            322 1222334555555554445444688999999876532 211111         11234455  8888766655 45


Q ss_pred             CCcEEEEeCCC-Cee--eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          568 DGTIMMWDLAS-GRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       568 dg~I~iwD~~~-~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      .+.|..||+.. ++.  ...+.. ......++++++|+++++....+.|.+++..
T Consensus       188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            67899999864 321  111111 1234568999999988877778899999875

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.14  E-value=0.00045  Score=77.05  Aligned_cols=148  Identities=14%  Similarity=0.131  Sum_probs=101.7

Q ss_pred             EEEEeCCCeEEEEeccCCceeEEeeCCCc----cEEE-EEEecCCCEEEEEE------CCCcEEEEECCCCceeEEecCC
Q 006220          436 ILSSSADTTIRLWSTKLNANLVCYKGHNY----PVWD-VQFNPQGHYFASSS------HDRTARIWSMDRIQPLRIMAGH  504 (656)
Q Consensus       436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~----~V~~-l~~sp~~~~l~sgs------~Dg~i~lwd~~~~~~~~~~~~~  504 (656)
                      ++.++.|+.|..+|..+++.+........    .+.+ -.+. ++ .+++++      .+|.|+.+|..+++.+-.+...
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            88888999999999999998876543220    1111 1111 34 455554      3799999999999988666532


Q ss_pred             CCCe--------------------------------------eEEEEcCCCCEEEEEECCC----------------cEE
Q 006220          505 LSDV--------------------------------------DCVRWHINCNYIATGSSDK----------------TVR  530 (656)
Q Consensus       505 ~~~V--------------------------------------~~v~~~p~~~~l~tgs~dg----------------~V~  530 (656)
                      ....                                      ...++.+....++.++.++                .|.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            1110                                      1345667778888877653                799


Q ss_pred             EEeCCCCeeEEEEecCCC----------CeEEEEEc-CCC---CEEEEEECCCcEEEEeCCCCeeeEeee
Q 006220          531 LWDVSSGECVRIFIGHRS----------MILSLAMS-PDG---RYMASGDEDGTIMMWDLASGRCVTPLM  586 (656)
Q Consensus       531 iwd~~~~~~~~~~~~h~~----------~i~~l~~s-p~g---~~L~s~~~dg~I~iwD~~~~~~~~~~~  586 (656)
                      -+|..+|+.+..+.....          ++. +... .+|   ..++.++.+|.+.++|..+|+.+....
T Consensus       282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            999999999887764321          221 2222 567   577888999999999999999887654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.14  E-value=0.00018  Score=80.03  Aligned_cols=178  Identities=12%  Similarity=0.082  Sum_probs=116.5

Q ss_pred             EEEccCCCEEEEEeCC----------------CeEEEEeccCCceeEEeeCC----------CccEEEEEEecCCC---E
Q 006220          427 ASFSPLGDFILSSSAD----------------TTIRLWSTKLNANLVCYKGH----------NYPVWDVQFNPQGH---Y  477 (656)
Q Consensus       427 l~~spd~~~L~s~s~D----------------g~I~lwd~~~~~~~~~~~~h----------~~~V~~l~~sp~~~---~  477 (656)
                      +++.+....++.++.+                +.|..+|..+++.+..++..          ..++. +....+|.   .
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~  318 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPL  318 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEE
Confidence            4566665666655532                36999999999988777532          12222 22234673   5


Q ss_pred             EEEEECCCcEEEEECCCCceeEEecCCC-------------CCe--------------------------eEEEEcCCCC
Q 006220          478 FASSSHDRTARIWSMDRIQPLRIMAGHL-------------SDV--------------------------DCVRWHINCN  518 (656)
Q Consensus       478 l~sgs~Dg~i~lwd~~~~~~~~~~~~~~-------------~~V--------------------------~~v~~~p~~~  518 (656)
                      ++.++.+|.++++|..+++.+..+....             .++                          ..++++|+..
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g  398 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR  398 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred             EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence            7788899999999999998876554211             011                          2357888877


Q ss_pred             EEEEEE-------------------------------------CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCE
Q 006220          519 YIATGS-------------------------------------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY  561 (656)
Q Consensus       519 ~l~tgs-------------------------------------~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~  561 (656)
                      .+++.+                                     .+|.|..||..+++.+..+... .++....+...+..
T Consensus       399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~  477 (571)
T 2ad6_A          399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGL  477 (571)
T ss_dssp             EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTE
T ss_pred             EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCE
Confidence            777654                                     3478999999999988777533 22222233334667


Q ss_pred             EEEEECCCcEEEEeCCCCeeeEeeeCCCcc-EEEEEEcCCCCEEEE
Q 006220          562 MASGDEDGTIMMWDLASGRCVTPLMGHTSC-VWTLAYSCEGSLLAS  606 (656)
Q Consensus       562 L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~-V~~l~~s~~~~~l~s  606 (656)
                      ++.++.||.|+.||.++|+.+.++...... -..+.+..+|+.++.
T Consensus       478 v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          478 VWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            888999999999999999999888643211 112335567764443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.14  E-value=0.0012  Score=67.72  Aligned_cols=207  Identities=8%  Similarity=0.033  Sum_probs=130.7

Q ss_pred             CeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       353 ~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ....++|++. +.+..+-...+.|..+++.....                           ........-....++++.+
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~---------------------------~~~~~~~~l~~p~glavd~   88 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---------------------------VQNVVVSGLLSPDGLACDW   88 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC---------------------------CCEEEEECCSCCCEEEEET
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc---------------------------eEEEEcCCCCCccEEEEEc
Confidence            4678899985 55555656678888888764210                           0011111223456788887


Q ss_pred             CCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE--CCCcEEEEECCCCceeEEecCCCCCe
Q 006220          432 LGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLSDV  508 (656)
Q Consensus       432 d~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs--~Dg~i~lwd~~~~~~~~~~~~~~~~V  508 (656)
                      .+. ++++-...+.|.+++++.................+++.|.+..++.+.  ..+.|...+++...............
T Consensus        89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~P  168 (318)
T 3sov_A           89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP  168 (318)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred             CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCc
Confidence            555 445556678999999875443333333444568999999766655555  35788888887544433444444567


Q ss_pred             eEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC
Q 006220          509 DCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG  587 (656)
Q Consensus       509 ~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~  587 (656)
                      +.++++|++..|+.+. ..+.|..+|+..........+.......+++. .+.++++-...+.|..+|..+|+....+..
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence            8999999766666554 56789999986443333333334556677775 345555655678899999888876655543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.12  E-value=0.0042  Score=63.34  Aligned_cols=213  Identities=9%  Similarity=0.045  Sum_probs=130.6

Q ss_pred             eeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          348 INTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      ...-.....++|++++. +.++-...+.|..+++.....                       . ..........-....+
T Consensus        26 ~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~-----------------------~-~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A           26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------------V-SSYDTVISRDIQAPDG   81 (316)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCCCE
T ss_pred             hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC-----------------------C-cccEEEEeCCCCCcCE
Confidence            33455688999998655 455555678898888764100                       0 0000111112234568


Q ss_pred             EEEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-C-CcEEEEECCCCceeEEecC
Q 006220          427 ASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-D-RTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       427 l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-D-g~i~lwd~~~~~~~~~~~~  503 (656)
                      +++.+.+..| ++-...+.|.+.+++................++++.|.+..++.+.. . +.|...+++..........
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~  161 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  161 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEEC
Confidence            8888755544 55566789999998754443333333445689999996665555543 3 6888888875443333333


Q ss_pred             CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEe-c--CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFI-G--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~-~--h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                      .......++++|++..|+.+. ..+.|..+|+.... .+.+. .  .......|++. .+.++++-...+.|..+|..+|
T Consensus       162 ~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence            445678999998777776655 55789999987433 33332 2  22345677775 3555666667788999998777


Q ss_pred             eeeEeee
Q 006220          580 RCVTPLM  586 (656)
Q Consensus       580 ~~~~~~~  586 (656)
                      +.+..+.
T Consensus       240 ~~~~~i~  246 (316)
T 1ijq_A          240 SDVNLLA  246 (316)
T ss_dssp             CCCEEEE
T ss_pred             cceEEEe
Confidence            7665554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.11  E-value=0.0063  Score=62.34  Aligned_cols=236  Identities=13%  Similarity=0.051  Sum_probs=133.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE-eecCccCEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQGHSGPVYSAS  428 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~l~  428 (656)
                      ....+.++.|.+++..+|+| ..|.| +...+....-                         ..... .......+.+|.
T Consensus        34 ~~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW-------------------------~~~~~~~~~~~~~~~~i~   86 (327)
T 2xbg_A           34 TTATILDMSFIDRHHGWLVG-VNATL-METRDGGQTW-------------------------EPRTLVLDHSDYRFNSVS   86 (327)
T ss_dssp             CSSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSC-------------------------EECCCCCSCCCCEEEEEE
T ss_pred             CCCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCC-------------------------eECCCCCCCCCccEEEEE
Confidence            34579999998888888866 56755 2332221100                         00000 011234678888


Q ss_pred             EccCCCEEEEEeCCCeEEEEeccCCceeEEee---CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ecCC
Q 006220          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGH  504 (656)
Q Consensus       429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~-~~~~  504 (656)
                      |++ +. ++.++..+.|.. ..+.++.-....   .+...+..+.+.+++..++++ .+|.|.. ..+.++.-.. ..+.
T Consensus        87 ~~~-~~-~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~  161 (327)
T 2xbg_A           87 FQG-NE-GWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEA  161 (327)
T ss_dssp             EET-TE-EEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSC
T ss_pred             ecC-Ce-EEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCC
Confidence            876 44 444455665544 333343333222   233457788887777666555 4565432 3333433322 2345


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeC--CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDV--SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~--~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      ...+..+++.+++.+++++...+..+-+|-  .+.+.+.  ......+..+.+.+++..++ ++.+|.+++++...|+.-
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW  238 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENW  238 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEE
T ss_pred             CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCee
Confidence            567889999999888877654444444442  2333332  34456788999999987654 456788877743334433


Q ss_pred             EeeeC----CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          583 TPLMG----HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       583 ~~~~~----h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ..+..    +...+.++.+.+++.+++++ .+|.| .+..+.+.
T Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~  280 (327)
T 2xbg_A          239 GELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQ  280 (327)
T ss_dssp             CCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTS
T ss_pred             EeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCc
Confidence            33321    22458899999888766655 46766 45555443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.11  E-value=0.0013  Score=75.97  Aligned_cols=249  Identities=11%  Similarity=0.029  Sum_probs=151.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ...|.++...++|. |.+|+..+-|.+++............        ....+.....      ...-....|.++...
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~--------~f~~~~~~~~------~~~l~~~~v~~i~~D  321 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQI--------RFEFIREGDN------NYSLSNASARYIFQD  321 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-----------------CEEECBCSS------TTSBSSSCEEEEEEC
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeecc--------ccccccCCCC------CCCCCCCeEEEEEEe
Confidence            35699999888876 45566656688888764211100000        0000000000      001134679999998


Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeEEee----------CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLVCYK----------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~----------~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~  500 (656)
                      ++|. |..|+.++-|..|+..+..... +.          .....|.++...++|. +..|+.++-+..|+..+......
T Consensus       322 ~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~  398 (781)
T 3v9f_A          322 SFNN-IWIGTWGGGINFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYN  398 (781)
T ss_dssp             SSCC-EEEEEBSSCEEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC
T ss_pred             CCCC-EEEEecCCeEEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEc
Confidence            8776 5667766779999887544322 21          0235688998887775 55677666788998765432211


Q ss_pred             e---cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          501 M---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (656)
Q Consensus       501 ~---~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD  575 (656)
                      .   ......|.++...++++ |.+|+.++-|..+|..+++......  .....|.++...++|.+. .|+. +-|..||
T Consensus       399 ~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~  475 (781)
T 3v9f_A          399 KENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVID  475 (781)
T ss_dssp             -----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEE
T ss_pred             cCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEe
Confidence            1   12345688888887775 5557777789999988776543321  134579999988887644 4555 5588999


Q ss_pred             CCCCeeeEeeeCC-----CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          576 LASGRCVTPLMGH-----TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       576 ~~~~~~~~~~~~h-----~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      ..+++........     ...|.++...++|.+.+. +.++-|..||..+.
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~  525 (781)
T 3v9f_A          476 LASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQ  525 (781)
T ss_dssp             SSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCC
T ss_pred             CCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCC
Confidence            8776543322222     367999999998886654 44344777887654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.06  E-value=0.0027  Score=65.12  Aligned_cols=189  Identities=11%  Similarity=0.059  Sum_probs=111.1

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEE-eeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC--CCCcee
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPL  498 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~--~~~~~~  498 (656)
                      +.++.+.+.+++..++++ .+|.|.. ..+.+..-.. .......+..+.+.+++.+++++...+..+-+|-  .+-+.+
T Consensus       122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~  199 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH  199 (327)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE
T ss_pred             CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC
Confidence            446777777766655555 4564432 2232333222 2344567889999998887776644333333342  122222


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-c---CCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-G---HRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~---h~~~i~~l~~sp~g~~L~s~~~dg~I~iw  574 (656)
                        -......+..+.+.+++..+ +++.+|.+++++...|..-..+. .   +...+.++.+.+++..++++ .+|.| ++
T Consensus       200 --~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~  274 (327)
T 2xbg_A          200 --NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LC  274 (327)
T ss_dssp             --ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EE
T ss_pred             --CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EE
Confidence              23455678899999988755 45567888777433243322222 1   22358899999887766665 46766 45


Q ss_pred             eCCCCeeeEeee---CCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          575 DLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       575 D~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      ....|+.-..+.   .+...+.++.|.+++ .+++++.+|.|.-++-
T Consensus       275 S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          275 SQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             ESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             eCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence            555555444443   233567888887554 5667778998776653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.05  E-value=0.0016  Score=70.30  Aligned_cols=242  Identities=10%  Similarity=0.038  Sum_probs=142.2

Q ss_pred             CeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec----CccCEEE
Q 006220          353 GLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG----HSGPVYS  426 (656)
Q Consensus       353 ~V~~l~fs~d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----h~~~V~~  426 (656)
                      ....++|+|.  ++++++-...+.|++.|+....                             +..+..    .......
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----------------------------v~~l~~~~~~~~~~p~~  190 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----------------------------LSSPLNINTIPTNRIRS  190 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----------------------------EEEEECCTTSSCSBEEE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----------------------------EEEEEccCccccCCCcE
Confidence            4678899983  4555555445668888876421                             111111    1235789


Q ss_pred             EEE-------ccCCCEEEEEeCCC-------eEEEEeccC-Ccee-----EEeeCCCccEEEEEEecC-CCEEEEEECCC
Q 006220          427 ASF-------SPLGDFILSSSADT-------TIRLWSTKL-NANL-----VCYKGHNYPVWDVQFNPQ-GHYFASSSHDR  485 (656)
Q Consensus       427 l~~-------spd~~~L~s~s~Dg-------~I~lwd~~~-~~~~-----~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg  485 (656)
                      ++|       ++++++|+++...+       .|.+++... +...     ..+.... ....++++|+ +.++++-..++
T Consensus       191 ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g  269 (496)
T 3kya_A          191 IAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKG  269 (496)
T ss_dssp             EEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTT
T ss_pred             EEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCC
Confidence            999       99999776665543       266665333 1111     1222112 3457889994 55555666788


Q ss_pred             cEEEEECC-------CCce-----------e-EEec-CCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeC--CCCee--E
Q 006220          486 TARIWSMD-------RIQP-----------L-RIMA-GHLSDVDCVRWHINCNYIATG-SSDKTVRLWDV--SSGEC--V  540 (656)
Q Consensus       486 ~i~lwd~~-------~~~~-----------~-~~~~-~~~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~--~~~~~--~  540 (656)
                      .|+.+|++       ++..           . ..+. +.......++|+|++++|+.+ +..+.|+.+|.  .++..  .
T Consensus       270 ~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~  349 (496)
T 3kya_A          270 QVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITP  349 (496)
T ss_dssp             EEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCC
T ss_pred             EEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceeccc
Confidence            89999987       4432           1 1122 223446789999999965555 45678888654  33332  1


Q ss_pred             EEEecC---C------------CCeE-EEEEc-------CCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC---------
Q 006220          541 RIFIGH---R------------SMIL-SLAMS-------PDGRYMASGDEDGTIMMWDLASGRCVTPLMGH---------  588 (656)
Q Consensus       541 ~~~~~h---~------------~~i~-~l~~s-------p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h---------  588 (656)
                      ..+.+.   .            .... .++..       ++|.++++=...++|+.++ .+|. +.++-+.         
T Consensus       350 ~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~  427 (496)
T 3kya_A          350 YNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADG  427 (496)
T ss_dssp             EEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHS
T ss_pred             EEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCc
Confidence            333332   1            1233 34444       4566666666778899998 4563 4444321         


Q ss_pred             -----C----------ccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCceee
Q 006220          589 -----T----------SCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       589 -----~----------~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                           .          .....|+++++ +.++++=.....|+.+++........
T Consensus       428 ~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~  481 (496)
T 3kya_A          428 NQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG  481 (496)
T ss_dssp             CSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred             cccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence                 0          23678999997 76666666778899999987665543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.00  E-value=7.6e-05  Score=84.72  Aligned_cols=227  Identities=10%  Similarity=0.024  Sum_probs=128.8

Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          355 NCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       355 ~~l~fs~dg~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      .++++..+++++++|+. ++.+.+||..........                          .+... ..-.++...+++
T Consensus       246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~--------------------------~~~~~-R~~~s~~~~~dg  298 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP--------------------------DMQVA-RGYQSSATMSDG  298 (656)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC--------------------------CCSSC-CSSCEEEECTTS
T ss_pred             ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC--------------------------CCCcc-ccccceEEecCC
Confidence            35778899999999974 557999997642211100                          00000 011234455688


Q ss_pred             CEEEEEe-CC-----CeEEEEeccCCceeEEeeCC-CccE----EEEEEecCCCEEEEEECCC---------cEEEEECC
Q 006220          434 DFILSSS-AD-----TTIRLWSTKLNANLVCYKGH-NYPV----WDVQFNPQGHYFASSSHDR---------TARIWSMD  493 (656)
Q Consensus       434 ~~L~s~s-~D-----g~I~lwd~~~~~~~~~~~~h-~~~V----~~l~~sp~~~~l~sgs~Dg---------~i~lwd~~  493 (656)
                      +.++.|+ .+     ..+.+||..+.+-... ... ..+.    ....+..++..++.|+.+|         .+..||..
T Consensus       299 ~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~  377 (656)
T 1k3i_A          299 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS  377 (656)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred             eEEEEeCcccCCcccccceEeCCCCCcceeC-CCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence            9888888 34     5699999886643322 100 0000    0011223455556665444         46788887


Q ss_pred             CCceeEEecCCC---------CCeeEEEEcC-CCCEEEEEECCC-----------cEEEEeCCCCeeEEEE--ecCCCC-
Q 006220          494 RIQPLRIMAGHL---------SDVDCVRWHI-NCNYIATGSSDK-----------TVRLWDVSSGECVRIF--IGHRSM-  549 (656)
Q Consensus       494 ~~~~~~~~~~~~---------~~V~~v~~~p-~~~~l~tgs~dg-----------~V~iwd~~~~~~~~~~--~~h~~~-  549 (656)
                      +.........+.         ..-.++.|.. +++.+++|+.++           .|.+||..+.......  ..+... 
T Consensus       378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~  457 (656)
T 1k3i_A          378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART  457 (656)
T ss_dssp             TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred             CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcc
Confidence            665433322221         1223444543 677788887543           6888898877655433  112222 


Q ss_pred             eEEEEEcCCCCEEEEEECC-----------CcEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEEC
Q 006220          550 ILSLAMSPDGRYMASGDED-----------GTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSA  609 (656)
Q Consensus       550 i~~l~~sp~g~~L~s~~~d-----------g~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~  609 (656)
                      -.+++..|+|++++.|+.+           ..+.+||..+.+-..  .+........+..+.++|++++.||.
T Consensus       458 ~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          458 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            2455677899999998854           468999987765322  12212222234556789999999985

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.96  E-value=0.00051  Score=76.58  Aligned_cols=177  Identities=14%  Similarity=0.123  Sum_probs=116.5

Q ss_pred             EEEEccCCCEEEEEeC--------------------C----CeEEEEeccCCceeEEeeC--CC--------ccEEEEEE
Q 006220          426 SASFSPLGDFILSSSA--------------------D----TTIRLWSTKLNANLVCYKG--HN--------YPVWDVQF  471 (656)
Q Consensus       426 ~l~~spd~~~L~s~s~--------------------D----g~I~lwd~~~~~~~~~~~~--h~--------~~V~~l~~  471 (656)
                      .+++.|....++.++.                    |    +.|..+|..+++.+-.++.  |.        .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4567777777766553                    2    6899999999999887753  21        1221 122


Q ss_pred             e-cCCC---EEEEEECCCcEEEEECCCCceeEEecCCC-------------CC---------------------------
Q 006220          472 N-PQGH---YFASSSHDRTARIWSMDRIQPLRIMAGHL-------------SD---------------------------  507 (656)
Q Consensus       472 s-p~~~---~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~-------------~~---------------------------  507 (656)
                      . .+|.   .++.++.+|.++++|.++++.+..+....             .+                           
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            1 3563   78889999999999999988876554221             00                           


Q ss_pred             -----eeEEEEcCCCCEEEEEE---------------------------------CCCcEEEEeCCCCeeEEEEecCCCC
Q 006220          508 -----VDCVRWHINCNYIATGS---------------------------------SDKTVRLWDVSSGECVRIFIGHRSM  549 (656)
Q Consensus       508 -----V~~v~~~p~~~~l~tgs---------------------------------~dg~V~iwd~~~~~~~~~~~~h~~~  549 (656)
                           -..++++|+...+++..                                 .+|.|.-||+.+|+.+....... +
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~  487 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-P  487 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-C
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-C
Confidence                 01346666655555433                                 25789999999999887765432 2


Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccE-EEEEEcCCCCEE
Q 006220          550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV-WTLAYSCEGSLL  604 (656)
Q Consensus       550 i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V-~~l~~s~~~~~l  604 (656)
                      +..-.....+.+++.|+.||.++.||.++|+.+.++....+.+ .-+.|..+|+..
T Consensus       488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence            2221222246788889999999999999999998887543221 125566677643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.95  E-value=0.0022  Score=65.72  Aligned_cols=184  Identities=17%  Similarity=0.255  Sum_probs=124.9

Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC----CCE--EEEEE--C--CCcEEEEECC-CCceeEE
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ----GHY--FASSS--H--DRTARIWSMD-RIQPLRI  500 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~----~~~--l~sgs--~--Dg~i~lwd~~-~~~~~~~  500 (656)
                      ...+++.....+-+.+||+ +++.+..+..  +.+..+..-|.    |..  ++.++  .  +++|.+|+++ ....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3456777777889999999 6888887764  45666766652    222  33333  4  5799999874 2234555


Q ss_pred             ecC------CC-CCeeEEEE--cCC-CC-EEEEEECCCcEEEEeCC-------CCeeEEEEecCCCCeEEEEEcCCCCEE
Q 006220          501 MAG------HL-SDVDCVRW--HIN-CN-YIATGSSDKTVRLWDVS-------SGECVRIFIGHRSMILSLAMSPDGRYM  562 (656)
Q Consensus       501 ~~~------~~-~~V~~v~~--~p~-~~-~l~tgs~dg~V~iwd~~-------~~~~~~~~~~h~~~i~~l~~sp~g~~L  562 (656)
                      +..      .. ..+..+++  +|. +. |+++...+|.+..|++.       +++.++.|... +.+-.+...+....|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeE
Confidence            522      11 45666777  664 43 68888889999999983       34667887753 568888899988999


Q ss_pred             EEEECCCcEEEEeCC-----CCeeeEeee-CC-CccEEEEEE--cCCCC-EEEEEE-CCCcEEEEeCC
Q 006220          563 ASGDEDGTIMMWDLA-----SGRCVTPLM-GH-TSCVWTLAY--SCEGS-LLASGS-ADCTVKLWDVT  619 (656)
Q Consensus       563 ~s~~~dg~I~iwD~~-----~~~~~~~~~-~h-~~~V~~l~~--s~~~~-~l~sgs-~Dg~I~iWd~~  619 (656)
                      +.+-++.-|..+|..     +++.+..+. ++ ...+..|++  .++++ +|++++ .+++..+||..
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            999998777666754     345565542 22 246788887  45555 566555 67899999997

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.92  E-value=0.0086  Score=68.84  Aligned_cols=206  Identities=8%  Similarity=-0.070  Sum_probs=130.3

Q ss_pred             cCccCEEEEEEccCCCE-EEEEeCCCeEEEEeccCC----ceeEEeeCCCccEEEEEEecCCCE-EEEEECCCcEEEEEC
Q 006220          419 GHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSM  492 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~~-L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp~~~~-l~sgs~Dg~i~lwd~  492 (656)
                      .....+.+++|++.+.. +++-...+.|+.+++...    .....+.........|++.+.+.. +++-...+.|.+.++
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l  500 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  500 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence            34566789999985554 455556788999998752    223333323445668999887654 455556789999999


Q ss_pred             CCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-C-CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCC
Q 006220          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-D-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDG  569 (656)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-d-g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg  569 (656)
                      +.......+.........|+++|.+.+|+.+.. . +.|...++........+...-.....|++.+.+..|+.+. ..+
T Consensus       501 dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~  580 (791)
T 3m0c_C          501 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  580 (791)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence            876555555555567899999998666666543 2 6798888865444444443445788999998776666654 456


Q ss_pred             cEEEEeCCCCeeeEeeeCC--CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          570 TIMMWDLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       570 ~I~iwD~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      .|...++........+...  -....+|++.. +.++++-...+.|...+..++....
T Consensus       581 ~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~  637 (791)
T 3m0c_C          581 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVN  637 (791)
T ss_dssp             EEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             cEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceE
Confidence            8999998544333333321  23345677643 3444444456778888876665443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.91  E-value=0.00084  Score=71.88  Aligned_cols=153  Identities=12%  Similarity=0.110  Sum_probs=99.6

Q ss_pred             CEEEEEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CC----cEEEEECCCCc
Q 006220          423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR----TARIWSMDRIQ  496 (656)
Q Consensus       423 ~V~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg----~i~lwd~~~~~  496 (656)
                      ....++|+| ++..|+.+...+.|+.+|+.++...... ........++|+++|++++++.. ++    .+..++.....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            456889998 4566666665588999999865543333 34455789999999996666654 22    23334432211


Q ss_pred             e-eEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEE-ECCCcEE
Q 006220          497 P-LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASG-DEDGTIM  572 (656)
Q Consensus       497 ~-~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~-h~~~i~~l~~sp~g~~L~s~-~~dg~I~  572 (656)
                      . ...+. .......++++| ++..+++-..++.|+.||..++.....+.. .......|+|+|+|++|+.+ ...+.|.
T Consensus       217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            1 12222 234567889999 676666666778999999987765333322 22356789999999955554 4677899


Q ss_pred             EEeCC
Q 006220          573 MWDLA  577 (656)
Q Consensus       573 iwD~~  577 (656)
                      .++..
T Consensus       296 ~~~~d  300 (430)
T 3tc9_A          296 RSDYD  300 (430)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            98765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.89  E-value=0.0019  Score=65.56  Aligned_cols=195  Identities=9%  Similarity=0.083  Sum_probs=126.1

Q ss_pred             EEEEEccCCCEEEEEe-CCCeEEEEeccCCceeEEeeCC-------CccEEEEEE---ecCCCEEEEEE-----------
Q 006220          425 YSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQF---NPQGHYFASSS-----------  482 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~---sp~~~~l~sgs-----------  482 (656)
                      -++.|.+....|+.++ ..++|..|+...+......-..       ...+.++.|   .|++.++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            4678988655555555 7899999999755443332211       124689999   68877777544           


Q ss_pred             --CCCcEEEEECC---CCceeEEecC-------------CCCCeeEEEEcCCCCEEEEEECC-CcEEEEeCCCCeeEEEE
Q 006220          483 --HDRTARIWSMD---RIQPLRIMAG-------------HLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRIF  543 (656)
Q Consensus       483 --~Dg~i~lwd~~---~~~~~~~~~~-------------~~~~V~~v~~~p~~~~l~tgs~d-g~V~iwd~~~~~~~~~~  543 (656)
                        .++.+..||+.   +++.+....-             -......++..++|+..++++.. +.|..++.... .+..+
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~  174 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTF  174 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeee
Confidence              26789999998   7777655441             11247889999999999999988 88888886543 33333


Q ss_pred             ecC------CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee-eEeee--CC---CccEEEE-EEcCCCCE-EEEEEC
Q 006220          544 IGH------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC-VTPLM--GH---TSCVWTL-AYSCEGSL-LASGSA  609 (656)
Q Consensus       544 ~~h------~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~-~~~~~--~h---~~~V~~l-~~s~~~~~-l~sgs~  609 (656)
                      ...      ....+.|+++|+|+.|++....|.+.-+|+.+... .....  +.   -.....+ ..-.+|+. |++.+.
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~  254 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA  254 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC
Confidence            211      12367899999999988887799999999874322 01111  21   1223343 33346777 555556


Q ss_pred             CCcEEEEeCCC
Q 006220          610 DCTVKLWDVTT  620 (656)
Q Consensus       610 Dg~I~iWd~~~  620 (656)
                      .+.+.+.+-..
T Consensus       255 ~~~~~l~S~Dg  265 (334)
T 2p9w_A          255 PYAISFRSWDN  265 (334)
T ss_dssp             TEEEEEECSST
T ss_pred             CCEEEEECCCC
Confidence            66555555443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.86  E-value=0.0013  Score=70.52  Aligned_cols=194  Identities=12%  Similarity=0.045  Sum_probs=119.2

Q ss_pred             CEEEEEEccC--CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC---Cc-EEEEECCCCc
Q 006220          423 PVYSASFSPL--GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD---RT-ARIWSMDRIQ  496 (656)
Q Consensus       423 ~V~~l~~spd--~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D---g~-i~lwd~~~~~  496 (656)
                      ...+++|+|+  +..|+.+...+.|+.++..++...... .......+++|+++|+++++....   .. +...+.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4568999985  445555555488999999766554433 344457899999999944443321   12 2333322211


Q ss_pred             e-eEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEE-ec-CCCCeEEEEEcCCCCEEEEEE-CCCcE
Q 006220          497 P-LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF-IG-HRSMILSLAMSPDGRYMASGD-EDGTI  571 (656)
Q Consensus       497 ~-~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~-h~~~i~~l~~sp~g~~L~s~~-~dg~I  571 (656)
                      . ...+. .......++++| ++...++-..++.|+.+|..++.....+ .. ....-..|+|+|+|++|+.+. ..+.|
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            1 11222 234566788999 6666666656788999999877763322 22 122335699999999665554 56789


Q ss_pred             EEEeCC--CCee--eEeeeCC---------------CccEEEEEE---------cCCCCEEEEEECCCcEEEEeC
Q 006220          572 MMWDLA--SGRC--VTPLMGH---------------TSCVWTLAY---------SCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       572 ~iwD~~--~~~~--~~~~~~h---------------~~~V~~l~~---------s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      +.++..  ++..  ...+.+.               -.....+++         .++|.++++-...+.|+.++.
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            998865  2321  1111111               123577999         777777777777788998884

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.83  E-value=0.0081  Score=69.07  Aligned_cols=214  Identities=9%  Similarity=0.036  Sum_probs=131.8

Q ss_pred             EeeCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          347 FINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      +......+..++|++.. .++++-...+.|+.+++......                        ......+........
T Consensus       419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~------------------------~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPD  474 (791)
T ss_dssp             EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCCC
T ss_pred             eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC------------------------cceeEEEecCCCCcc
Confidence            34445567889998854 44555555677888887641100                        001112222334556


Q ss_pred             EEEEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC--CCcEEEEECCCCceeEEec
Q 006220          426 SASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       426 ~l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~--Dg~i~lwd~~~~~~~~~~~  502 (656)
                      .|++.+.++.| ++-...+.|.+.+++.......+.........|++.|.+.+|+.+..  .+.|...+++.......+.
T Consensus       475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~  554 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  554 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence            78888777544 55566789999999855544444444455789999997655555543  3688889988766555555


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEecC--CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          503 GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~  579 (656)
                      ........|++++.+..|+.+. ..+.|..+++............  -.....|++.. +.++++-...+.|...|..+|
T Consensus       555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence            5556789999998777776654 4568999998655444444332  22345666642 234444446678888887777


Q ss_pred             eeeEee
Q 006220          580 RCVTPL  585 (656)
Q Consensus       580 ~~~~~~  585 (656)
                      +.+..+
T Consensus       634 ~~~~~l  639 (791)
T 3m0c_C          634 SDVNLL  639 (791)
T ss_dssp             CCCEEE
T ss_pred             cceEEe
Confidence            655544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.78  E-value=0.0062  Score=62.37  Aligned_cols=193  Identities=14%  Similarity=0.248  Sum_probs=122.9

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC----CC---
Q 006220          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL----GD---  434 (656)
Q Consensus       362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd----~~---  434 (656)
                      ..+++++....+-+.+||+..                             +....+..  +.+..+..-|.    |+   
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G-----------------------------~~l~~~~~--g~~nnVD~r~~~~l~g~~~d   87 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDG-----------------------------KMLHSYNT--GKLNNVDIRYDFPLNGKKVD   87 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTS-----------------------------CEEEEECC--SCEEEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEcCCCCEEEEcCCC-----------------------------cEEEEccC--CCcccEEEecccccCCceEe
Confidence            455555556778899999953                             12222221  44555555442    22   


Q ss_pred             E-EEEEeC--CCeEEEEeccC-CceeEEeeC------CC-ccEEEEEE--ecC-CC-EEEEEECCCcEEEEECC------
Q 006220          435 F-ILSSSA--DTTIRLWSTKL-NANLVCYKG------HN-YPVWDVQF--NPQ-GH-YFASSSHDRTARIWSMD------  493 (656)
Q Consensus       435 ~-L~s~s~--Dg~I~lwd~~~-~~~~~~~~~------h~-~~V~~l~~--sp~-~~-~l~sgs~Dg~i~lwd~~------  493 (656)
                      + +++.-.  +++|++|+++. ...+..+..      .. ..+..+|+  +|. +. ++++...+|.+..|++.      
T Consensus        88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~  167 (355)
T 3amr_A           88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY  167 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC
T ss_pred             EEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc
Confidence            2 233334  57899997742 223443321      11 45667887  664 43 67888889999999883      


Q ss_pred             -CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-----CCeeEEEEe-cC-CCCeEEEEE--cCCCC-EE
Q 006220          494 -RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-----SGECVRIFI-GH-RSMILSLAM--SPDGR-YM  562 (656)
Q Consensus       494 -~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~-----~~~~~~~~~-~h-~~~i~~l~~--sp~g~-~L  562 (656)
                       +.+.++.+... +.+..|...+....|+.+-.+.-|..+|..     +++.+..+. ++ ...+..|++  .++|+ +|
T Consensus       168 ~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL  246 (355)
T 3amr_A          168 ISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL  246 (355)
T ss_dssp             EEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred             ccceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence             33556777643 578888999988999999999778778855     345555442 22 236788887  45555 66


Q ss_pred             EEEE-CCCcEEEEeCC-CCeeeEeee
Q 006220          563 ASGD-EDGTIMMWDLA-SGRCVTPLM  586 (656)
Q Consensus       563 ~s~~-~dg~I~iwD~~-~~~~~~~~~  586 (656)
                      ++++ .+++..+||.. +.+.+..+.
T Consensus       247 ivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          247 MASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            6655 67799999996 667777664

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.77  E-value=0.0064  Score=63.04  Aligned_cols=229  Identities=10%  Similarity=0.130  Sum_probs=124.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      -..-..++|.|||+++++ ..+|.|.+++ .. ..... .                      ..............++|+
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g-~~~~~-~----------------------~~~v~~~g~~~p~gia~~   83 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR-EG-RLSTY-A----------------------ELSVYHRGESGLLGLALH   83 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE-TT-EEEEE-E----------------------ECCCCCSTTCSEEEEEEC
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE-CC-CccEe-e----------------------cceEeecCCCCceeEEEC
Confidence            445789999999996665 4679999988 32 10000 0                      000111223567899999


Q ss_pred             cC---CCEEEEEeC-C-----CeEEEEeccCCc-----eeE-Eee---CCCccEEEEEEecCCCEEEEEEC---------
Q 006220          431 PL---GDFILSSSA-D-----TTIRLWSTKLNA-----NLV-CYK---GHNYPVWDVQFNPQGHYFASSSH---------  483 (656)
Q Consensus       431 pd---~~~L~s~s~-D-----g~I~lwd~~~~~-----~~~-~~~---~h~~~V~~l~~sp~~~~l~sgs~---------  483 (656)
                      |+   +..|+.+.. .     +.|..|+...+.     .+. .+.   +.......++|.|+|.++++.+.         
T Consensus        84 pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d  163 (352)
T 2ism_A           84 PRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQD  163 (352)
T ss_dssp             TTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGC
T ss_pred             CCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccC
Confidence            98   555554433 2     568888876431     111 132   11123468999999976666432         


Q ss_pred             ----CCcEEEEECCCC-------------ceeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcE------EEEeCCCCe-
Q 006220          484 ----DRTARIWSMDRI-------------QPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTV------RLWDVSSGE-  538 (656)
Q Consensus       484 ----Dg~i~lwd~~~~-------------~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V------~iwd~~~~~-  538 (656)
                          .|.|.-++.+..             .......++ .....++|+| ++..+++-.....+      .+.-+..+. 
T Consensus       164 ~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~n  242 (352)
T 2ism_A          164 LASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGN  242 (352)
T ss_dssp             TTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCB
T ss_pred             CCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCc
Confidence                145666665431             111112233 3366789999 66655543332221      122222221 


Q ss_pred             -----------------eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee------eEeeeCCCccEEEE
Q 006220          539 -----------------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC------VTPLMGHTSCVWTL  595 (656)
Q Consensus       539 -----------------~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~------~~~~~~h~~~V~~l  595 (656)
                                       ++..+. +......++| .+|.++++....+.|...++.....      ...+..-...+..+
T Consensus       243 yGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v  320 (352)
T 2ism_A          243 YGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREV  320 (352)
T ss_dssp             CCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEE
T ss_pred             CCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEE
Confidence                             222232 2234566777 4676666666667787777653321      12222223578899


Q ss_pred             EEcCCCCEEEEEE
Q 006220          596 AYSCEGSLLASGS  608 (656)
Q Consensus       596 ~~s~~~~~l~sgs  608 (656)
                      ++.|||.++++..
T Consensus       321 ~~~pdG~lyv~~~  333 (352)
T 2ism_A          321 QVGPDGALYVTTS  333 (352)
T ss_dssp             EECTTSCEEEEEC
T ss_pred             EECCCCcEEEEEe
Confidence            9999998777654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.69  E-value=0.025  Score=58.54  Aligned_cols=230  Identities=10%  Similarity=0.060  Sum_probs=127.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      .-..-..++|.|||+++++ ..+|.|++++-..  . ....                      ..............|+|
T Consensus        27 ~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G--~-~~~~----------------------~~~v~~~g~~g~~gia~   80 (354)
T 3a9g_A           27 DLEVPWSIAPLGGGRYLVT-ERPGRLVLISPSG--K-KLVA----------------------SFDVANVGEAGLLGLAL   80 (354)
T ss_dssp             SCSCEEEEEEEETTEEEEE-ETTTEEEEECSSC--E-EEEE----------------------ECCCCCSTTCSEEEEEE
T ss_pred             CCCCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC--c-eEee----------------------ccceeecCCCceeeEEe
Confidence            3456789999999986655 4669998886321  1 0000                      00001112345789999


Q ss_pred             ccC---CCEEEEEeC----C----CeEEEEeccCCc-------ee-EEeeC-CCccEEEEEEecCCCEEEEEEC------
Q 006220          430 SPL---GDFILSSSA----D----TTIRLWSTKLNA-------NL-VCYKG-HNYPVWDVQFNPQGHYFASSSH------  483 (656)
Q Consensus       430 spd---~~~L~s~s~----D----g~I~lwd~~~~~-------~~-~~~~~-h~~~V~~l~~sp~~~~l~sgs~------  483 (656)
                      +|+   +..|+.+..    +    +.|..|+.....       .+ ..+.. .......+.|.|+|.++++.+.      
T Consensus        81 ~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~  160 (354)
T 3a9g_A           81 HPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRL  160 (354)
T ss_dssp             CTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGG
T ss_pred             CCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCcc
Confidence            997   555544432    3    567777766431       11 11221 1123467999999987766442      


Q ss_pred             -------CCcEEEEECCCC--------ceeEEecCCCCCeeEEEEcC-CCCEEEEEECCC---cEEEEeCCCCe------
Q 006220          484 -------DRTARIWSMDRI--------QPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDK---TVRLWDVSSGE------  538 (656)
Q Consensus       484 -------Dg~i~lwd~~~~--------~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg---~V~iwd~~~~~------  538 (656)
                             .|.|.-++.+..        .......++ .....++|+| +++.+++-....   .|.+..  .+.      
T Consensus       161 ~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~  237 (354)
T 3a9g_A          161 AQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPL  237 (354)
T ss_dssp             GTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTT
T ss_pred             ccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCc
Confidence                   245555555432        111122244 3456899999 566554432221   233322  111      


Q ss_pred             ------------eEEEEecCCCCeEEEEEc-------CCCCEEEEEECCCcEEEEeCCCC-eee--Eeee-CCCccEEEE
Q 006220          539 ------------CVRIFIGHRSMILSLAMS-------PDGRYMASGDEDGTIMMWDLASG-RCV--TPLM-GHTSCVWTL  595 (656)
Q Consensus       539 ------------~~~~~~~h~~~i~~l~~s-------p~g~~L~s~~~dg~I~iwD~~~~-~~~--~~~~-~h~~~V~~l  595 (656)
                                  ++..+.........++|.       .+|.++++....+.|...++... ...  ..+. +-...+..+
T Consensus       238 ~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v  317 (354)
T 3a9g_A          238 ATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDV  317 (354)
T ss_dssp             CCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEE
T ss_pred             ccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEE
Confidence                        222231122356778883       46777777767788888888753 222  2232 224578999


Q ss_pred             EEcCCCCEEEEEE
Q 006220          596 AYSCEGSLLASGS  608 (656)
Q Consensus       596 ~~s~~~~~l~sgs  608 (656)
                      ++.|||.++++..
T Consensus       318 ~~~pDG~lyv~~~  330 (354)
T 3a9g_A          318 VIDDDGGILISTS  330 (354)
T ss_dssp             EECTTSCEEEEEC
T ss_pred             EECCCCcEEEEEe
Confidence            9999998777664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.65  E-value=0.00031  Score=80.14  Aligned_cols=205  Identities=8%  Similarity=-0.060  Sum_probs=121.1

Q ss_pred             cCEEEEEEccCCCEEEEE-eCCCeEEEEeccC----CceeEEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 006220          422 GPVYSASFSPLGDFILSS-SADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI  495 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~-s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~  495 (656)
                      ..+.+++|++.+..|+.+ ...+.|+.+++..    ......+.........|++.+. ++++++-...+.|.+++++..
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            345678999877666554 4567899999875    2222222211223456788754 444555456788999998866


Q ss_pred             ceeEEecCCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEE-EECCCcEE
Q 006220          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS-GDEDGTIM  572 (656)
Q Consensus       496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s-~~~dg~I~  572 (656)
                      .....+.........++++|.+.+|+.+..  .+.|..+++............-.....|+|+|++..|+. -+..+.|.
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            544444444456788999997665555442  267888877543222222222344667999997655554 44667899


Q ss_pred             EEeCCCCeeeEeee--CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          573 MWDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       573 iwD~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      .+|+........+.  ..-....+|++..+ .++++....+.|..++..+++....+
T Consensus       566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence            99986432222221  11122345566543 45555556788999998776654433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.64  E-value=0.055  Score=60.61  Aligned_cols=200  Identities=8%  Similarity=-0.053  Sum_probs=131.4

Q ss_pred             cCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEE-EEEECCCcEEEEECCCCceeE
Q 006220          422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDRIQPLR  499 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~sgs~Dg~i~lwd~~~~~~~~  499 (656)
                      ..+.+++|++.+..|+ +-..++.|..++++.......+........++++.+.+..| ++-...+.|.+.+++......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            4578999998766555 55567899999987554433333322346688998765544 554567889999987665444


Q ss_pred             EecCCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeC
Q 006220          500 IMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDL  576 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~  576 (656)
                      .+.........++++|...+|+.+..  .+.|...++......... ..-.....|+++++++.|+.+. ..+.|..+|+
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            44455566889999996666666542  567888887654433333 3456778999999877666654 5678999998


Q ss_pred             CCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       577 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      ..... ..+...-....++++.. +.++++-...+.|...|..++...
T Consensus       196 dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~  241 (628)
T 4a0p_A          196 LGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR  241 (628)
T ss_dssp             TSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence            65433 23333333456788764 445555555788988887766543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.59  E-value=0.019  Score=64.24  Aligned_cols=203  Identities=8%  Similarity=-0.023  Sum_probs=125.0

Q ss_pred             ccCEEEEEEccCCCEEEEE-eCCCeEEEEeccCCce-eEEeeCCCccEEEEEEecCCCE-EEEEECCCcEEEEECCCCce
Q 006220          421 SGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQP  497 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~-s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~~~~-l~sgs~Dg~i~lwd~~~~~~  497 (656)
                      -..+..++|++.+..|+.+ ...+.|..++++.... ...+...-....++++.+.+.. +++-...+.|.+.+++....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            3457899999877666544 4567899999875432 2233333346789999985554 45555678999999987654


Q ss_pred             eEEecCCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCcEEEE
Q 006220          498 LRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMW  574 (656)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iw  574 (656)
                      ...+.........++++|.+.+|+.+..  .+.|...++............-.....|+++++++.|+.+ ...+.|...
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~  198 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  198 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence            4444455567889999997666666553  3567777765433333333344567899999976666555 456789999


Q ss_pred             eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       575 D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      |+..........+......++++..+ .++++-...+.|...|..+++..
T Consensus       199 ~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          199 NLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             SSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred             cCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence            98654332222211222346677655 44454456678999998776543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.58  E-value=0.033  Score=56.46  Aligned_cols=205  Identities=8%  Similarity=0.042  Sum_probs=126.5

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec------
Q 006220          347 FINTHNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG------  419 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------  419 (656)
                      +....----|++|.+....|..+ ...|.|..|+........                          . .+.+      
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~--------------------------~-~~~~~s~~g~   60 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN--------------------------V-VIDGASSNGD   60 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE--------------------------E-CCTTTCCSSC
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE--------------------------E-ecCCccccCC
Confidence            33333345688998755555555 479999999976321110                          0 0100      


Q ss_pred             CccCEEEEEE---ccCCCEEEEEe-------------CCCeEEEEecc---CCceeEEeeC-------------CCccEE
Q 006220          420 HSGPVYSASF---SPLGDFILSSS-------------ADTTIRLWSTK---LNANLVCYKG-------------HNYPVW  467 (656)
Q Consensus       420 h~~~V~~l~~---spd~~~L~s~s-------------~Dg~I~lwd~~---~~~~~~~~~~-------------h~~~V~  467 (656)
                      ....+.++.|   .|+++++++..             .+..|..+|+.   +++.+....-             -.....
T Consensus        61 ~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n  140 (334)
T 2p9w_A           61 GEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV  140 (334)
T ss_dssp             CSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE
T ss_pred             CcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc
Confidence            0113478999   68877766543             26789999999   7777655431             112478


Q ss_pred             EEEEecCCCEEEEEECC-CcEEEEECCCCceeEEec-----CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee--
Q 006220          468 DVQFNPQGHYFASSSHD-RTARIWSMDRIQPLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC--  539 (656)
Q Consensus       468 ~l~~sp~~~~l~sgs~D-g~i~lwd~~~~~~~~~~~-----~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~--  539 (656)
                      +++..++|+..++++.. +.|...+.+.........     ......+.|+++|+|+.|++....|.+..+|+.+...  
T Consensus       141 DvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~  220 (334)
T 2p9w_A          141 QSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWP  220 (334)
T ss_dssp             EEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCC
T ss_pred             eeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCccee
Confidence            99999999999999988 888777776542221211     1122367999999999998887799999999885333  


Q ss_pred             EEEEe-cC---CCCeEEE-EEcCCCCE-EEEEECCCcEEEEeCCC
Q 006220          540 VRIFI-GH---RSMILSL-AMSPDGRY-MASGDEDGTIMMWDLAS  578 (656)
Q Consensus       540 ~~~~~-~h---~~~i~~l-~~sp~g~~-L~s~~~dg~I~iwD~~~  578 (656)
                      +..-. +.   -.....| ..-.+|+. |++....+.+.+.+...
T Consensus       221 v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          221 EPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             ecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            22110 21   1223343 33346777 45555566666666543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.54  E-value=0.019  Score=64.30  Aligned_cols=205  Identities=9%  Similarity=0.022  Sum_probs=123.7

Q ss_pred             CCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          351 HNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      -+....++|++.+..|... ...+.|..+++....                           ..............++++
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~---------------------------~~~~v~~~~~~~P~GlAv   91 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE---------------------------SVQNVVVSGLLSPDGLAC   91 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCEEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC---------------------------ceEEEEeCCCCCcCeEEE
Confidence            4457899999866655544 456778888876410                           001112222246788999


Q ss_pred             ccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC--CCcEEEEECCCCceeEEecCCCC
Q 006220          430 SPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMAGHLS  506 (656)
Q Consensus       430 spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~--Dg~i~lwd~~~~~~~~~~~~~~~  506 (656)
                      .+.+..| ++-...+.|.+.+++...........-....+|++.|.+.+++.+..  .+.|...+++.............
T Consensus        92 D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~  171 (619)
T 3s94_A           92 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY  171 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred             EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCC
Confidence            9866644 55566789999999855443333334445678999997655555543  46777777776554444444556


Q ss_pred             CeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220          507 DVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~  583 (656)
                      ....+++++.+..|+.+. ..+.|..+|+..........+.......|++..+ ..+++-...+.|...|..+++...
T Consensus       172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~  248 (619)
T 3s94_A          172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR  248 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred             CCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence            688999998766666554 5678999998654433322212222345677655 444444566789988987775443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.54  E-value=0.032  Score=57.76  Aligned_cols=240  Identities=11%  Similarity=0.098  Sum_probs=128.4

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          352 NGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       352 ~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ..-..++|.|||+ +++ +...|.|++++...... .....                     .........+....++|+
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~-~~~~~---------------------~~~v~~~g~~g~~gia~~   74 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLS-APLSG---------------------VPDVWAHGQGGLLDVVLA   74 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEETTTEEC-CCCBS---------------------CCCCCCSTTCSEEEEEEC
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeCCCcee-eEecC---------------------CcccccCCCCCceeEEEC
Confidence            4578999999999 555 45789998887432100 00000                     000111223456889999


Q ss_pred             cC---CCEEEEEe-C-------CCeEEEEeccCCc----ee-EEeeC------CCccEEEEEEecCCCEEEEEEC-----
Q 006220          431 PL---GDFILSSS-A-------DTTIRLWSTKLNA----NL-VCYKG------HNYPVWDVQFNPQGHYFASSSH-----  483 (656)
Q Consensus       431 pd---~~~L~s~s-~-------Dg~I~lwd~~~~~----~~-~~~~~------h~~~V~~l~~sp~~~~l~sgs~-----  483 (656)
                      |+   +..|+.+. .       ...|..|+.....    .. ..+..      .......+.|.|+|.++++.+.     
T Consensus        75 pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~  154 (353)
T 2g8s_A           75 PDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRP  154 (353)
T ss_dssp             TTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGG
T ss_pred             CCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCC
Confidence            96   45444332 2       2356666664321    11 11111      1122457999999966555443     


Q ss_pred             --------CCcEEEEECCCCc------------eeEEe-cCCCCCeeEEEEcCCCCEEEEEECC--CcEEEEeCCCC---
Q 006220          484 --------DRTARIWSMDRIQ------------PLRIM-AGHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSG---  537 (656)
Q Consensus       484 --------Dg~i~lwd~~~~~------------~~~~~-~~~~~~V~~v~~~p~~~~l~tgs~d--g~V~iwd~~~~---  537 (656)
                              .|.|.-++.+..-            ....+ .++ .....++|+|....|+++...  +.=.|.-+..+   
T Consensus       155 ~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~ny  233 (353)
T 2g8s_A          155 TAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNY  233 (353)
T ss_dssp             GGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBC
T ss_pred             ccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcC
Confidence                    2456666765420            11222 234 346789999943344444322  11222222111   


Q ss_pred             ----------------------------eeEEEEecCCCCeEEEEEcC-------CCCEEEEEECCCcEEEEeCCCCeee
Q 006220          538 ----------------------------ECVRIFIGHRSMILSLAMSP-------DGRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       538 ----------------------------~~~~~~~~h~~~i~~l~~sp-------~g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                                                  .++..+. +......++|..       +|.++++....+.|...++..++.+
T Consensus       234 Gwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~  312 (353)
T 2g8s_A          234 GWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT  312 (353)
T ss_dssp             CTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE
T ss_pred             CCCCccCCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe
Confidence                                        1112222 223566788864       4777777777788888888766544


Q ss_pred             Ee--e-eCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeC
Q 006220          583 TP--L-MGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDV  618 (656)
Q Consensus       583 ~~--~-~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~  618 (656)
                      ..  + ......+..+++.|||.++++.. .+|  +||.+
T Consensus       313 ~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          313 EDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             EEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEEEE
T ss_pred             eeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEEEE
Confidence            32  2 12235789999999998766543 334  44543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.50  E-value=0.00035  Score=79.71  Aligned_cols=222  Identities=9%  Similarity=0.022  Sum_probs=126.6

Q ss_pred             CCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          351 HNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      ...+..++|++.+..|... ...+.|+.+++.......                        .....+.........|++
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~------------------------~~~~~i~~~~~~P~glav  460 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------------------------SYDTVISRDIQAPDGLAV  460 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C------------------------CCCCBCCSCC--CCCEEC
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc------------------------ceEEEEeCCCCCcceEEE
Confidence            3456788998876655544 456788888876410000                        000000011122345777


Q ss_pred             ccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-C-CCcEEEEECCCCceeEEecCCCC
Q 006220          430 SPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-H-DRTARIWSMDRIQPLRIMAGHLS  506 (656)
Q Consensus       430 spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~-Dg~i~lwd~~~~~~~~~~~~~~~  506 (656)
                      .+.+. ++++-...+.|.++++........+.........|++.|.+.+|+.+. . .+.|..++++.......+.....
T Consensus       461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~  540 (699)
T 1n7d_A          461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ  540 (699)
T ss_dssp             CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred             EeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence            75444 445545678899999875544333333334457889998655554443 2 26788888765443333333345


Q ss_pred             CeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCeeEEEEec--CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220          507 DVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~  583 (656)
                      ....|+|+|++..|+.+ +..+.|..+|+........+..  .......|++..+ .++++....+.|..+|..+|+.+.
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence            57789999876555544 4567899999864333222221  1123345566543 455555667899999988888777


Q ss_pred             eeeCCCccEEEEEE
Q 006220          584 PLMGHTSCVWTLAY  597 (656)
Q Consensus       584 ~~~~h~~~V~~l~~  597 (656)
                      .+.......++|++
T Consensus       620 ~i~~~~~~P~~i~v  633 (699)
T 1n7d_A          620 LLAENLLSPEDMVL  633 (699)
T ss_dssp             CCCTTCSSCCCCCB
T ss_pred             EeecCCCCCcEEEE
Confidence            76543333444544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.49  E-value=0.0056  Score=61.54  Aligned_cols=183  Identities=10%  Similarity=0.073  Sum_probs=97.7

Q ss_pred             CCCEEEEEeCC-----CeEEEEeccCCc---eeEE--eeCCCccEEEEEEecCCCEEEEEECC-----CcEEEEECCCCc
Q 006220          432 LGDFILSSSAD-----TTIRLWSTKLNA---NLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQ  496 (656)
Q Consensus       432 d~~~L~s~s~D-----g~I~lwd~~~~~---~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D-----g~i~lwd~~~~~  496 (656)
                      ++..++.|+.+     ..+.+||..+..   -...  +.........+.+  ++..++.|+.+     ..+.+||+.+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            46666777654     468899988765   2221  1111111112222  56777777644     358888987765


Q ss_pred             eeEEec--CCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeEEEEecCCC--CeEEEEEcCCCCEEEEEEC
Q 006220          497 PLRIMA--GHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRS--MILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       497 ~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~d-----g~V~iwd~~~~~~~~~~~~h~~--~i~~l~~sp~g~~L~s~~~  567 (656)
                      -...-.  .......++.  .++..++.|+.+     ..+.+||+.+.+-...-.....  ...++.+  ++++++.|+.
T Consensus       140 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~  215 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGF  215 (301)
T ss_dssp             EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCC
Confidence            333221  1111122222  266677777654     4689999987755433111111  1122222  5677777765


Q ss_pred             C-----CcEEEEeCCCCeeeEe--eeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCC
Q 006220          568 D-----GTIMMWDLASGRCVTP--LMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTST  622 (656)
Q Consensus       568 d-----g~I~iwD~~~~~~~~~--~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~  622 (656)
                      +     ..+.+||+.+.+-...  +.........+.+  ++.+++.|+.+     ..|.+||+.+.+
T Consensus       216 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          216 DGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            4     4689999987653322  2211111222222  67777887765     357888887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.40  E-value=0.027  Score=58.13  Aligned_cols=207  Identities=13%  Similarity=0.177  Sum_probs=120.2

Q ss_pred             CCeEEEEEcCCCCEEEEEe------------CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe--
Q 006220          352 NGLNCASISQDGSLVAGGF------------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--  417 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~------------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--  417 (656)
                      .+.-.+.+.|+|..+++++            .+|.|.++|..+....                        .......  
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~------------------------~~~l~~~g~  105 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA------------------------VSELEIIGN  105 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCC------------------------EEECEEECS
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc------------------------eEEEEccCC
Confidence            3556667788876555541            6899999997642110                        0111110  


Q ss_pred             --ecCccCEEEEEEcc--CCC-EEEEE-eC--CCeEEEEeccCCce----eEEeeCC-CccEEEEEEecCCCEEEEEEC-
Q 006220          418 --QGHSGPVYSASFSP--LGD-FILSS-SA--DTTIRLWSTKLNAN----LVCYKGH-NYPVWDVQFNPQGHYFASSSH-  483 (656)
Q Consensus       418 --~~h~~~V~~l~~sp--d~~-~L~s~-s~--Dg~I~lwd~~~~~~----~~~~~~h-~~~V~~l~~sp~~~~l~sgs~-  483 (656)
                        .........+.+.+  ++. +|+.+ ..  +.+|.+|+++....    +..+.+. -...+++.+.++|.+.++... 
T Consensus       106 ~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~  185 (355)
T 3sre_A          106 TLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY  185 (355)
T ss_dssp             SCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCS
T ss_pred             CCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcE
Confidence              11233556666655  343 34443 22  56888988775432    2233332 235789999999987776541 


Q ss_pred             ----------------CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC-Cee--EEEE
Q 006220          484 ----------------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GEC--VRIF  543 (656)
Q Consensus       484 ----------------Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~-~~~--~~~~  543 (656)
                                      .|.++.+|.  ++ ++.+.......+.++|+|+++.|+.+. ..+.|+.|++.. +..  .+.+
T Consensus       186 ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~  262 (355)
T 3sre_A          186 FIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL  262 (355)
T ss_dssp             CSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred             eCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE
Confidence                            234444444  33 333333445678999999998887765 568899999863 332  2344


Q ss_pred             ecCCCCeEEEEEcC-CCCEEEEEECC-CcEEEEeCC--CCeeeEeee
Q 006220          544 IGHRSMILSLAMSP-DGRYMASGDED-GTIMMWDLA--SGRCVTPLM  586 (656)
Q Consensus       544 ~~h~~~i~~l~~sp-~g~~L~s~~~d-g~I~iwD~~--~~~~~~~~~  586 (656)
                       ...+....+++.+ +|++.+++..+ +.|..||-.  .+..+.++.
T Consensus       263 -~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          263 -SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             -ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             -eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence             2345677899999 59887766644 345545433  244555544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.31  E-value=0.23  Score=55.45  Aligned_cols=208  Identities=11%  Similarity=0.021  Sum_probs=127.1

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE-ee--cCccCEEEE
Q 006220          352 NGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQ--GHSGPVYSA  427 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~--~h~~~V~~l  427 (656)
                      ..+..++|.+....|... ...+.|+.+++.......                         .... ..  .....+.++
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~-------------------------v~~~~~~~~~~~~~p~gl  394 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFT-------------------------VVVSSVPSQNLEIQPYDL  394 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------------EEC--------CCCEEEE
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceE-------------------------EEEcccccccccCCcceE
Confidence            457788888765555444 346677777765311000                         0000 00  123467899


Q ss_pred             EEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCC--cEEEEECCCCceeEEecC
Q 006220          428 SFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDR--TARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       428 ~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg--~i~lwd~~~~~~~~~~~~  503 (656)
                      ++...++.| ++-+..+.|.+.+++.......+........+|++.| .|.++++-....  .|...+++..........
T Consensus       395 AvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~  474 (628)
T 4a0p_A          395 SIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFS  474 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECS
T ss_pred             EeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEec
Confidence            999887755 4666778999999874322233333445678999999 565555543333  577777776555445554


Q ss_pred             CCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220          504 HLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                      .....+.+++.+.+..|+.+.. .+.|...|+.. ...+.+. ........|++.. +..+++=...+.|...|..+|+.
T Consensus       475 ~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~  552 (628)
T 4a0p_A          475 GLSKPIALALDSRLGKLFWADSDLRRIESSDLSG-ANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREG  552 (628)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSC
T ss_pred             cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-CceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCC
Confidence            5567889999998777776654 57899999854 3344443 3334566777754 44444544567788888777765


Q ss_pred             eEeee
Q 006220          582 VTPLM  586 (656)
Q Consensus       582 ~~~~~  586 (656)
                      ...+.
T Consensus       553 ~~~i~  557 (628)
T 4a0p_A          553 RTKVQ  557 (628)
T ss_dssp             CEEEE
T ss_pred             cEEEe
Confidence            55444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.31  E-value=0.014  Score=58.56  Aligned_cols=183  Identities=15%  Similarity=0.163  Sum_probs=95.6

Q ss_pred             CCCEEEEEeCC-----CeEEEEeccCCceeEEe--eCCCccEEEEEEecCCCEEEEEECCC-----cEEEEECCCCceeE
Q 006220          432 LGDFILSSSAD-----TTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDRIQPLR  499 (656)
Q Consensus       432 d~~~L~s~s~D-----g~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~sgs~Dg-----~i~lwd~~~~~~~~  499 (656)
                      ++..++.|+.+     ..+.+||..+.+-...-  ....... +++. -++..++.|+.++     .+.+||+.+.+-..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            46666777654     35888888765432221  1111111 1222 2577777787553     47788887654333


Q ss_pred             Eec--CCCCCeeEEEEcCCCCEEEEEECC-------CcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEECC
Q 006220          500 IMA--GHLSDVDCVRWHINCNYIATGSSD-------KTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       500 ~~~--~~~~~V~~v~~~p~~~~l~tgs~d-------g~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      .-.  .......++.  -++..++.|+.+       ..+.+||+.+..-...-.  .......++.+  ++++++.|+.+
T Consensus       139 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  214 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHD  214 (302)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBS
T ss_pred             cCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCC
Confidence            211  1111112222  255666666542       458899998775443211  11111122222  56777777654


Q ss_pred             -----CcEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEECCC-----cEEEEeCCCCC
Q 006220          569 -----GTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSADC-----TVKLWDVTTST  622 (656)
Q Consensus       569 -----g~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~Dg-----~I~iWd~~~~~  622 (656)
                           ..+.+||+.+.+-..  .+.........+.  .++.+++.|+.++     .+.+||+.+.+
T Consensus       215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence                 468999988764322  2211111111222  2677788887653     48889987754

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.28  E-value=0.025  Score=61.06  Aligned_cols=194  Identities=13%  Similarity=0.117  Sum_probs=116.1

Q ss_pred             CEEEEEEccC-CCEEEEEe-CCCeEEEEeccCCceeEEeeCC---CccEEEEEE-------ecCCCEEEEEECCC-----
Q 006220          423 PVYSASFSPL-GDFILSSS-ADTTIRLWSTKLNANLVCYKGH---NYPVWDVQF-------NPQGHYFASSSHDR-----  485 (656)
Q Consensus       423 ~V~~l~~spd-~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~l~~-------sp~~~~l~sgs~Dg-----  485 (656)
                      ....|+|+|. +..|+.+. ..+.|++.|..++.........   ......++|       +++|.+++++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983 55455444 4467888998876554443321   234789999       99999777766543     


Q ss_pred             --cEEEEECCC-Ccee-----EEecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCC-------CCee----------
Q 006220          486 --TARIWSMDR-IQPL-----RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVS-------SGEC----------  539 (656)
Q Consensus       486 --~i~lwd~~~-~~~~-----~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~-------~~~~----------  539 (656)
                        .+.+++... +...     ..+.. ......++.+|+ +.++++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              256665433 1111     22221 224567888995 4545556677889999987       5543          


Q ss_pred             -EEE-Ee-cCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEeC--CCCeee--EeeeCC---C------------ccEE-EE
Q 006220          540 -VRI-FI-GHRSMILSLAMSPDGRYMASG-DEDGTIMMWDL--ASGRCV--TPLMGH---T------------SCVW-TL  595 (656)
Q Consensus       540 -~~~-~~-~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iwD~--~~~~~~--~~~~~h---~------------~~V~-~l  595 (656)
                       ... +. +.......|+|+|+|++|+.+ +..+.|+.+|.  ..+...  ..+-+.   .            .... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             112 22 223456789999999965555 45678888654  333210  112111   0            1234 45


Q ss_pred             EEc-------CCCCEEEEEECCCcEEEEe
Q 006220          596 AYS-------CEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       596 ~~s-------~~~~~l~sgs~Dg~I~iWd  617 (656)
                      +..       .++.++++=.....|+.++
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~  407 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT  407 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEEC
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEe
Confidence            554       4566677666778899988

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.23  E-value=0.027  Score=56.65  Aligned_cols=185  Identities=8%  Similarity=0.035  Sum_probs=97.8

Q ss_pred             CCCEEEEEeCC----CeEEEEeccCCceeEEe--eCCCccEEEEEEecCCCEEEEEECC------CcEEEEECCCCceeE
Q 006220          432 LGDFILSSSAD----TTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQPLR  499 (656)
Q Consensus       432 d~~~L~s~s~D----g~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~sgs~D------g~i~lwd~~~~~~~~  499 (656)
                      ++..++.|+.+    ..+.+||..+.+-...-  .........+.+  ++..++.|+.+      ..+.+||..+.+-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            45666777654    56888998766432221  111111112222  67777777765      468889988765333


Q ss_pred             EecCCC--CCeeEEEEcCCCCEEEEEEC---------CCcEEEEeCCCCeeEEEEecCCCC-eEEEEEcCCCCEEEEEEC
Q 006220          500 IMAGHL--SDVDCVRWHINCNYIATGSS---------DKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       500 ~~~~~~--~~V~~v~~~p~~~~l~tgs~---------dg~V~iwd~~~~~~~~~~~~h~~~-i~~l~~sp~g~~L~s~~~  567 (656)
                      .-....  ....++.  -++..++.|+.         -..+.+||..+..-...-...... -.+++.. ++++++.|+.
T Consensus       133 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~  209 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQ  209 (306)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCE
T ss_pred             CCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCC
Confidence            211111  1112222  25666666653         345889999887544321111111 1122222 5677777664


Q ss_pred             C-----CcEEEEeCCCCeee--EeeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCCc
Q 006220          568 D-----GTIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTK  623 (656)
Q Consensus       568 d-----g~I~iwD~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~~  623 (656)
                      +     ..+.+||+.+.+-.  ..+.........+.+  ++.+++.|+.+     ..+.+||+.+.+-
T Consensus       210 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          210 NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             ETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             CCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence            3     46889998876432  222211112222333  67788888754     4688899877653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.22  E-value=0.25  Score=50.71  Aligned_cols=239  Identities=14%  Similarity=0.110  Sum_probs=129.4

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  425 (656)
                      .+...-..-+.++|.|||+++++--..|.|++++......... ..                     .-.......+...
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v-~~---------------------~~~v~~~g~~Gll   83 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTEL-GE---------------------VPGVSPSGEGGLL   83 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-EE---------------------CTTCCCBTTBSEE
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeee-cc---------------------cCceeecCCCCce
Confidence            3444456789999999999877765489998887432111000 00                     0001123346788


Q ss_pred             EEEEccC---CCEEEEE---eCCCeEEEEeccCC----------ceeE-Eee-CCCccEEEEEEecCCCEEEEEEC----
Q 006220          426 SASFSPL---GDFILSS---SADTTIRLWSTKLN----------ANLV-CYK-GHNYPVWDVQFNPQGHYFASSSH----  483 (656)
Q Consensus       426 ~l~~spd---~~~L~s~---s~Dg~I~lwd~~~~----------~~~~-~~~-~h~~~V~~l~~sp~~~~l~sgs~----  483 (656)
                      .|+++|+   +..|+.+   ..++.|.-|....+          +.+. .+. ........|.|.|+|.++++.+.    
T Consensus        84 Gia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~  163 (347)
T 3das_A           84 GIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDT  163 (347)
T ss_dssp             EEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCG
T ss_pred             eeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCC
Confidence            9999995   3444432   23455666665541          1111 121 11223457999999987777542    


Q ss_pred             ---------CCcEEEEECCCC--------ceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCe-------
Q 006220          484 ---------DRTARIWSMDRI--------QPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGE-------  538 (656)
Q Consensus       484 ---------Dg~i~lwd~~~~--------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~-------  538 (656)
                               .|.|.-.+.+..        .....-.+|. ....++|+|+|.+.++-. .++.-.|--+..|.       
T Consensus       164 ~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~  242 (347)
T 3das_A          164 GLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEA  242 (347)
T ss_dssp             GGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTC
T ss_pred             ccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcc
Confidence                     345555554432        1111222553 456889999876655432 23322332222221       


Q ss_pred             -----------eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee----EeeeCCCccEEEEEEcCCCCE
Q 006220          539 -----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV----TPLMGHTSCVWTLAYSCEGSL  603 (656)
Q Consensus       539 -----------~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~----~~~~~h~~~V~~l~~s~~~~~  603 (656)
                                 ++..+..+......|+|. +|..+...-..+.|....+..+..+    ..+.+..+.+..++..|||.+
T Consensus       243 ~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~l  321 (347)
T 3das_A          243 EGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKL  321 (347)
T ss_dssp             CSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEE
T ss_pred             cCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcE
Confidence                       122333222345667776 4566665555667766676554321    223334467899999999877


Q ss_pred             EEEEE
Q 006220          604 LASGS  608 (656)
Q Consensus       604 l~sgs  608 (656)
                      +++.+
T Consensus       322 yv~td  326 (347)
T 3das_A          322 WLVTS  326 (347)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            66654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.19  E-value=0.28  Score=52.50  Aligned_cols=112  Identities=11%  Similarity=0.084  Sum_probs=60.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      -...++++|.|||+++++-...+.|++++.......... ....                   ........+....|+|+
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~-~~~~-------------------~~~~~~g~~Gllgia~~   85 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVF-QVPE-------------------IVNDADGQNGLLGFAFH   85 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECTT-------------------CCCCTTSSCSEEEEEEC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEe-cCCc-------------------cccccCCCCceeEEEEC
Confidence            346789999999998777643346877764321110000 0000                   00000124567899999


Q ss_pred             cC---CCEEEEEeC-------------CCeEEEEeccCC-------ceeE-Eee-CCCccEEEEEEecCCCEEEEEE
Q 006220          431 PL---GDFILSSSA-------------DTTIRLWSTKLN-------ANLV-CYK-GHNYPVWDVQFNPQGHYFASSS  482 (656)
Q Consensus       431 pd---~~~L~s~s~-------------Dg~I~lwd~~~~-------~~~~-~~~-~h~~~V~~l~~sp~~~~l~sgs  482 (656)
                      |+   +..|+.+..             ...|.-|+....       +.+. .+. ........|.|.|+|.++++.+
T Consensus        86 Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           86 PDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            96   555544332             234555655432       1111 122 1123468899999998777755

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.18  E-value=0.056  Score=55.78  Aligned_cols=184  Identities=14%  Similarity=0.150  Sum_probs=111.6

Q ss_pred             CEEEEEEccCCCEEEEEe------------CCCeEEEEeccCC--ce-eEEeeC-----CCccEEEEEEec--CCC-EEE
Q 006220          423 PVYSASFSPLGDFILSSS------------ADTTIRLWSTKLN--AN-LVCYKG-----HNYPVWDVQFNP--QGH-YFA  479 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s------------~Dg~I~lwd~~~~--~~-~~~~~~-----h~~~V~~l~~sp--~~~-~l~  479 (656)
                      ..-.+...|+|..+++++            .+|.|.++|.++.  +. ...+.+     .......+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            344566788776655552            6899999998742  21 112222     223567787766  343 454


Q ss_pred             EEE-C--CCcEEEEECCCCce----eEEecC-CCCCeeEEEEcCCCCEEEEEEC-----------------CCcEEEEeC
Q 006220          480 SSS-H--DRTARIWSMDRIQP----LRIMAG-HLSDVDCVRWHINCNYIATGSS-----------------DKTVRLWDV  534 (656)
Q Consensus       480 sgs-~--Dg~i~lwd~~~~~~----~~~~~~-~~~~V~~v~~~p~~~~l~tgs~-----------------dg~V~iwd~  534 (656)
                      ++. .  +.++.+|+++....    +..+.+ .....+.+.+.++|.+.++...                 .|.|..+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            443 3  46788887764322    223332 2345788999999987776541                 245555554


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCC-Cee--eEeeeCCCccEEEEEEcC-CCCEEEEEEC
Q 006220          535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS-GRC--VTPLMGHTSCVWTLAYSC-EGSLLASGSA  609 (656)
Q Consensus       535 ~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~-~~~--~~~~~~h~~~V~~l~~s~-~~~~l~sgs~  609 (656)
                        ++.. .....-...+.|+||||++.|+.+. ..+.|..||+.. +..  ...+ ...+..-.+++.+ +|++.+++..
T Consensus       211 --~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          211 --NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             --TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred             --CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence              3332 2222334578899999998877765 568899999863 322  1122 2245678899999 5998887764


Q ss_pred             C
Q 006220          610 D  610 (656)
Q Consensus       610 D  610 (656)
                      +
T Consensus       287 ~  287 (355)
T 3sre_A          287 N  287 (355)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.05  E-value=0.41  Score=50.14  Aligned_cols=235  Identities=12%  Similarity=0.165  Sum_probs=152.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCE
Q 006220          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (656)
Q Consensus       356 ~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~  435 (656)
                      +.-.+|..+.+|.-. ...++|+|+....                            ......- ...|.-=.|-.+ +.
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~----------------------------klks~~~-~e~VvfWkWis~-~~  118 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKS----------------------------KMKAHTM-TDDVTFWKWISL-NT  118 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTE----------------------------EEEEEEC-SSCCCEEEEEET-TE
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhh----------------------------hhcceec-CCCceEEEecCC-Ce
Confidence            344567777777764 6789999998521                            2222222 235656667543 34


Q ss_pred             EEEEeCCCeEEEEeccCC-ceeEEeeCC----CccEEEEEEecCCCEEEEEE-------CCCcEEEEECCCCceeEEecC
Q 006220          436 ILSSSADTTIRLWSTKLN-ANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       436 L~s~s~Dg~I~lwd~~~~-~~~~~~~~h----~~~V~~l~~sp~~~~l~sgs-------~Dg~i~lwd~~~~~~~~~~~~  503 (656)
                      |+-.+ +..|+-|++... .+...+..|    ...|..-..+++.++++..|       -.|.+.+|+.+.. ..+.+.|
T Consensus       119 l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieG  196 (494)
T 1bpo_A          119 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG  196 (494)
T ss_dssp             EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECC
T ss_pred             EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhee
Confidence            44444 357999999743 445555544    34577777888888876554       2478899998864 4566778


Q ss_pred             CCCCeeEEEEcCC---CCEEEEEEC---CCcEEEEeCCCC---e------eEEEEecC---CCCeEEEEEcCCCCEEEEE
Q 006220          504 HLSDVDCVRWHIN---CNYIATGSS---DKTVRLWDVSSG---E------CVRIFIGH---RSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       504 ~~~~V~~v~~~p~---~~~l~tgs~---dg~V~iwd~~~~---~------~~~~~~~h---~~~i~~l~~sp~g~~L~s~  565 (656)
                      |......+...-+   .+.++.+..   .+.+++.++...   .      .+..+...   ..--.++..|+....++.-
T Consensus       197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi  276 (494)
T 1bpo_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  276 (494)
T ss_dssp             SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred             eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence            8554444433211   123444443   278999988532   1      11111111   2345678899988899999


Q ss_pred             ECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       566 ~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      +.-|.|.+||+.++.++..-+-...+|..-+-+....-++.....|.|.--.+....-
T Consensus       277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence            9999999999999999988776667776666666656677777888888777776544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.00  E-value=0.55  Score=53.63  Aligned_cols=232  Identities=11%  Similarity=0.090  Sum_probs=134.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      .+.|+|+.-..+|. |-.|+.+| +..||-....  .. ..               .         .......|.++.-.
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~--~~-~~---------------~---------~~~~~~~i~~i~~d   71 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQ--QH-FT---------------Y---------GENNNTRIYCGVII   71 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEE--EC-SC---------------T---------TSTTSSCEEEEEEE
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceE--EE-Ec---------------c---------CCCCCceEEEEEEc
Confidence            56799999888875 55677777 4456522100  00 00               0         00123468888777


Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec----CCCC
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA----GHLS  506 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~----~~~~  506 (656)
                      .++ .|..|+.+| +..||..+.............|.++.. .+| .+..|+.+ -+..+|..+.+......    ....
T Consensus        72 ~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~  146 (758)
T 3ott_A           72 DNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNN  146 (758)
T ss_dssp             TTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCS
T ss_pred             CCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCC
Confidence            655 566666655 889998765322111112234777654 344 56667765 58888987654332211    1234


Q ss_pred             CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC-----CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-----~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                      .|.++....++...+ |+.+ -+..+|..++.........     ...|.++...+++..|..|+. +-+..+|..+++.
T Consensus       147 ~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~  223 (758)
T 3ott_A          147 TIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI  223 (758)
T ss_dssp             CEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred             eEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence            578888777776544 5554 5778888776543321111     124888888877775555554 4588889877653


Q ss_pred             eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       582 ~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      ..........|.++....+|.+.+. +. +-+.+++..+.
T Consensus       224 ~~~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~  261 (758)
T 3ott_A          224 KQTEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTT  261 (758)
T ss_dssp             EEEEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTS
T ss_pred             EeccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCC
Confidence            3211112346888888888876654 44 45778887654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.95  E-value=0.053  Score=54.78  Aligned_cols=187  Identities=7%  Similarity=0.025  Sum_probs=93.8

Q ss_pred             cCCCEEEEEeC----C-------CeEEEEeccCCceeEEeeCCCccE--EEEEEecCCCEEEEEECC--------CcEEE
Q 006220          431 PLGDFILSSSA----D-------TTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSSHD--------RTARI  489 (656)
Q Consensus       431 pd~~~L~s~s~----D-------g~I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~sgs~D--------g~i~l  489 (656)
                      .++..++.|+.    +       ..+..||..+.+-.. +..-..+-  .+++.. ++..++.|+.+        ..+.+
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~  121 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMC  121 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEE
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEE
Confidence            46677777763    1       126778877654321 11111111  112222 56667777632        45888


Q ss_pred             EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-C-----CcEEEEeCCCCeeEEEEecCCC--CeEEEEEcCCCCE
Q 006220          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-D-----KTVRLWDVSSGECVRIFIGHRS--MILSLAMSPDGRY  561 (656)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-d-----g~V~iwd~~~~~~~~~~~~h~~--~i~~l~~sp~g~~  561 (656)
                      ||..+.+-...-..........+...++..++.|+. +     ..+.+||..+.+-...-.....  ...++.+  ++++
T Consensus       122 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i  199 (315)
T 4asc_A          122 YDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRI  199 (315)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred             ECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEE
Confidence            998775432211111111111111235666677765 2     4689999987654332111111  1122222  5777


Q ss_pred             EEEEECCC-----cEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEECCC--------------cEEEEeCCC
Q 006220          562 MASGDEDG-----TIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSADC--------------TVKLWDVTT  620 (656)
Q Consensus       562 L~s~~~dg-----~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~Dg--------------~I~iWd~~~  620 (656)
                      ++.|+.++     .+.+||+.+.+-..  .+.........+.+  ++.+++.|+.++              .|.+||+.+
T Consensus       200 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  277 (315)
T 4asc_A          200 IVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEE  277 (315)
T ss_dssp             EEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT
T ss_pred             EEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCC
Confidence            77777654     58889987764322  22111112222222  567778777642              367888877


Q ss_pred             CCc
Q 006220          621 STK  623 (656)
Q Consensus       621 ~~~  623 (656)
                      .+-
T Consensus       278 ~~W  280 (315)
T 4asc_A          278 KKW  280 (315)
T ss_dssp             TEE
T ss_pred             Chh
Confidence            643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.84  E-value=0.22  Score=51.22  Aligned_cols=192  Identities=13%  Similarity=0.084  Sum_probs=104.8

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee--EEee---CCCccEEEEEEecC---CCEEEEEE-CC-----CcE
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL--VCYK---GHNYPVWDVQFNPQ---GHYFASSS-HD-----RTA  487 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~--~~~~---~h~~~V~~l~~sp~---~~~l~sgs-~D-----g~i  487 (656)
                      ....+++|.|+|+++++ ..+|.|++++  ++...  ..+.   ........|+|+|+   +..|+++. ..     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34578999999985554 5669999998  34321  1111   12345789999998   44554443 22     578


Q ss_pred             EEEECCCCc-----ee-EEec---CCCCCeeEEEEcCCCCEEEEEEC-------------CCcEEEEeCCCC--------
Q 006220          488 RIWSMDRIQ-----PL-RIMA---GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSG--------  537 (656)
Q Consensus       488 ~lwd~~~~~-----~~-~~~~---~~~~~V~~v~~~p~~~~l~tgs~-------------dg~V~iwd~~~~--------  537 (656)
                      ..|+.....     .+ ..+.   +.......++|.|+|...++.+.             .|.|.-++....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            888876431     11 1122   11123468999999976655332             145666665420        


Q ss_pred             -----eeEEEEecCCCCeEEEEEcC-CCCEEEEEECCCc--------EEEEeCCCCe------------------eeEee
Q 006220          538 -----ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGT--------IMMWDLASGR------------------CVTPL  585 (656)
Q Consensus       538 -----~~~~~~~~h~~~i~~l~~sp-~g~~L~s~~~dg~--------I~iwD~~~~~------------------~~~~~  585 (656)
                           .....-.++. ....++|+| +|.++++-...+.        |.+..  .+.                  ++..+
T Consensus       188 ~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~  264 (352)
T 2ism_A          188 GRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLYFW  264 (352)
T ss_dssp             TCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             CCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeEec
Confidence                 1111112332 256789999 6665555333332        33332  221                  22233


Q ss_pred             eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       586 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                       .+......++| .+|.++++.-..+.|...++...
T Consensus       265 -~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~  298 (352)
T 2ism_A          265 -PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGE  298 (352)
T ss_dssp             -TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEE
T ss_pred             -CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCC
Confidence             22234567777 46666666556667777776543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.80  E-value=0.093  Score=54.84  Aligned_cols=141  Identities=16%  Similarity=0.152  Sum_probs=96.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeEEeeCC----CccEEEEEEecCCCEEEEEECCCcEEEEECCCCc----------
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----------  496 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~----------  496 (656)
                      .+|..++.+- ++.||.-++......+.++..    -..|..+..+|+|.++|..+. ..|.|..+..+.          
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence            4555555554 367888888755444444432    226788999999999998865 678888876221          


Q ss_pred             --eeEEecC------CCCCeeEEEEcC---CCCEEEEEECCCcEEEEeCCCC--eeEEEEe---------cCCCCeEEEE
Q 006220          497 --PLRIMAG------HLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSSG--ECVRIFI---------GHRSMILSLA  554 (656)
Q Consensus       497 --~~~~~~~------~~~~V~~v~~~p---~~~~l~tgs~dg~V~iwd~~~~--~~~~~~~---------~h~~~i~~l~  554 (656)
                        ..+.+.-      ...+|..+.|||   ++..|++-..|++||+||+...  ++. .+.         .....|.+++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence              1123321      246799999999   4568999999999999999853  222 222         1225688999


Q ss_pred             EcCCCCEEEEEE--CCCcEEEE
Q 006220          555 MSPDGRYMASGD--EDGTIMMW  574 (656)
Q Consensus       555 ~sp~g~~L~s~~--~dg~I~iw  574 (656)
                      |.++|-.|...+  ..|.|+-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            999887777755  77877643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.73  E-value=0.044  Score=55.23  Aligned_cols=183  Identities=16%  Similarity=0.148  Sum_probs=94.3

Q ss_pred             CCCEEEEEeC----C-----CeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 006220          432 LGDFILSSSA----D-----TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRI  495 (656)
Q Consensus       432 d~~~L~s~s~----D-----g~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D-----g~i~lwd~~~~  495 (656)
                      ++..++.|+.    +     ..+.+||..+.+-...  +.........+.+  ++..++.|+.+     ..+.+||..+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            4556666654    2     3578888876542221  1111111112222  56777777643     45788888765


Q ss_pred             ceeEEec--CCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEE
Q 006220          496 QPLRIMA--GHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       496 ~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~d-----g~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~  566 (656)
                      +-...-.  .......++.+  ++..++.|+.+     ..+.+||+.+.+-...-.  .......++.+  ++++++.|+
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  223 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG  223 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeC
Confidence            4332211  11111222222  56666777654     468999988765433211  11111222223  567777776


Q ss_pred             CC-----CcEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCC
Q 006220          567 ED-----GTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTST  622 (656)
Q Consensus       567 ~d-----g~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~  622 (656)
                      .+     ..+.+||+.+.+-..  .+.........+.+  ++.+++.|+.+     ..|.+||+.+.+
T Consensus       224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            54     569999988764332  22111111122222  56777777754     357788887654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.60  E-value=0.12  Score=49.08  Aligned_cols=177  Identities=12%  Similarity=0.034  Sum_probs=100.3

Q ss_pred             CCEEEEEeCCCeEEEEeccCCce------eEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee------E
Q 006220          433 GDFILSSSADTTIRLWSTKLNAN------LVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL------R  499 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~------~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~------~  499 (656)
                      ...|++...| +|+.=....+..      ...+-. -=..+.+++|+|+|.+.++  .+|.++-.+..+....      .
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            3456666777 666555443331      122211 1246779999999987776  6777666665442211      1


Q ss_pred             Ee-cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-------EEEEecCCCCeEEEEEcCCCCEEEEEECCCcE
Q 006220          500 IM-AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (656)
Q Consensus       500 ~~-~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-------~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I  571 (656)
                      .+ ..--....++.|.|+|.+.++  .||.|+-++-.+...       ..+-.+--..+..|.|.|+|.+.+..  |+.+
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            11 111122578999999987777  569998888643211       11111111467999999999877666  7775


Q ss_pred             EEEeCCCCe------eeEeee-CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          572 MMWDLASGR------CVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       572 ~iwD~~~~~------~~~~~~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      .-+.-.++.      ....+- .....-..+.|++++.+.++.  +|  ++|....
T Consensus       157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~  208 (236)
T 1tl2_A          157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP  208 (236)
T ss_dssp             EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred             EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence            444333221      011111 222344557799999877766  66  4555433

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.59  E-value=0.058  Score=53.92  Aligned_cols=175  Identities=9%  Similarity=0.053  Sum_probs=90.9

Q ss_pred             CeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECC-----CcEEEEECCCCc---eeEEec--CCCCCeeE
Q 006220          443 TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQ---PLRIMA--GHLSDVDC  510 (656)
Q Consensus       443 g~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D-----g~i~lwd~~~~~---~~~~~~--~~~~~V~~  510 (656)
                      ..+.+||..+.+-...  +....... +++ .-++..++.|+.+     ..+.+||..+.+   -...-.  .......+
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYV-ASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccc-cEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence            3688888876542221  11111111 122 2356777777755     468899988765   332211  11111222


Q ss_pred             EEEcCCCCEEEEEECC-----CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCe
Q 006220          511 VRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-----GTIMMWDLASGR  580 (656)
Q Consensus       511 v~~~p~~~~l~tgs~d-----g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d-----g~I~iwD~~~~~  580 (656)
                      +.+  ++..++.|+.+     ..+.+||..+.+-...-..........+..-++++++.|+.+     ..+.+||+.+.+
T Consensus       109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH  186 (301)
T ss_dssp             EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCc
Confidence            222  56666777643     368899988775443322111111111112267777777654     458899987764


Q ss_pred             eeEe--eeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCCc
Q 006220          581 CVTP--LMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTK  623 (656)
Q Consensus       581 ~~~~--~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~~  623 (656)
                      -...  +.........+.+  ++.+++.|+.+     ..+.+||+.+.+-
T Consensus       187 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          187 WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence            3322  2111111122222  56777777764     4688999887643

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.57  E-value=0.24  Score=49.87  Aligned_cols=176  Identities=10%  Similarity=0.076  Sum_probs=104.3

Q ss_pred             EEEccCCCEEEEEeCC--------------CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE----CCCcEE
Q 006220          427 ASFSPLGDFILSSSAD--------------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----HDRTAR  488 (656)
Q Consensus       427 l~~spd~~~L~s~s~D--------------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs----~Dg~i~  488 (656)
                      --+++++.+|+-+...              ..|+..+++......... .  +  +..|++++..|+-..    ....|+
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-D--P--CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-S--C--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-C--C--ccEEEEeCCEEEEEeecCCCCceEE
Confidence            3457888888766543              467777877654333222 1  2  236778888888765    344666


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      ..+++.....+... +..    .+|+++++.|+-.+. ...|...++..+...+.+.   +... ..++|++++|+-...
T Consensus       133 ~~~~dGs~~~~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~  203 (302)
T 3s25_A          133 RIRIDGEEKKKIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDV  203 (302)
T ss_dssp             EEETTSCCCEEEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEG
T ss_pred             EEECCCCCeEEEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEc
Confidence            66777555444433 322    345678888876654 6789888987776655543   2222 346699998887664


Q ss_pred             C--CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC--CCcEEEEeCCCC
Q 006220          568 D--GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA--DCTVKLWDVTTS  621 (656)
Q Consensus       568 d--g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~--Dg~I~iWd~~~~  621 (656)
                      .  ..|..-++..+. ...+..  ..+  ..|+|++..|.-++.  .+.|..-++...
T Consensus       204 ~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          204 NRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             GGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            4  356666665443 333322  233  236777887776532  345666566543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.55  E-value=0.29  Score=51.21  Aligned_cols=131  Identities=16%  Similarity=0.135  Sum_probs=86.2

Q ss_pred             CcEEEEECCCCceeEEecCC----CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCe------------eEEEEec---
Q 006220          485 RTARIWSMDRIQPLRIMAGH----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE------------CVRIFIG---  545 (656)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~----~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~------------~~~~~~~---  545 (656)
                      +.||.-++.....-+.+...    ...|..+..+|+|++||..+ +..|.|..+..+.            ..+.+.-   
T Consensus        41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~  119 (452)
T 3pbp_A           41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE  119 (452)
T ss_dssp             TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred             CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence            45555555433333333322    23678899999999999885 5588888876321            1233332   


Q ss_pred             ---CCCCeEEEEEcCC---CCEEEEEECCCcEEEEeCCCCe--eeEeee---------CCCccEEEEEEcCCCCEEEEEE
Q 006220          546 ---HRSMILSLAMSPD---GRYMASGDEDGTIMMWDLASGR--CVTPLM---------GHTSCVWTLAYSCEGSLLASGS  608 (656)
Q Consensus       546 ---h~~~i~~l~~sp~---g~~L~s~~~dg~I~iwD~~~~~--~~~~~~---------~h~~~V~~l~~s~~~~~l~sgs  608 (656)
                         ...+|..+.|+|-   |..|++-..|+.|++||+....  +. .+.         .....|.+++|+.++-.|...+
T Consensus       120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~  198 (452)
T 3pbp_A          120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN  198 (452)
T ss_dssp             C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred             ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence               2578999999994   5689999999999999997522  11 221         1225688999998876666655


Q ss_pred             --CCCcEEEEe
Q 006220          609 --ADCTVKLWD  617 (656)
Q Consensus       609 --~Dg~I~iWd  617 (656)
                        ..|.|+-.-
T Consensus       199 ~t~~GDIYAlc  209 (452)
T 3pbp_A          199 TTEGGDIFAFY  209 (452)
T ss_dssp             CTTSCEEEEES
T ss_pred             cCCCCCEEEEC
Confidence              667766543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.51  E-value=0.61  Score=47.98  Aligned_cols=198  Identities=11%  Similarity=0.048  Sum_probs=108.8

Q ss_pred             ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc-eeEEee---CCCccEEEEEEecC---CCEEEEEEC----C----C
Q 006220          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYK---GHNYPVWDVQFNPQ---GHYFASSSH----D----R  485 (656)
Q Consensus       421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~---~h~~~V~~l~~sp~---~~~l~sgs~----D----g  485 (656)
                      -....+++|.|+|++++ +..+|.|++++. ++. .+..+.   ........|+++|+   +..|+++..    +    .
T Consensus        28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34567999999998554 456699999974 343 222111   12345789999997   445544432    3    5


Q ss_pred             cEEEEECCCC--c---e--e-EEec-CCCCCeeEEEEcCCCCEEEEEEC-------------CCcEEEEeCCCC------
Q 006220          486 TARIWSMDRI--Q---P--L-RIMA-GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSG------  537 (656)
Q Consensus       486 ~i~lwd~~~~--~---~--~-~~~~-~~~~~V~~v~~~p~~~~l~tgs~-------------dg~V~iwd~~~~------  537 (656)
                      .|..|+....  .   .  + ..+. ........++|.|+|.+.++.+.             .|.|.-++....      
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777776543  1   1  1 1122 11123467999999986666432             245666665321      


Q ss_pred             --eeEEEEecCCCCeEEEEEcC-CCCEEEEEECCC---cEEEEeCCC--------C--------eeeEeeeCCCccEEEE
Q 006220          538 --ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDG---TIMMWDLAS--------G--------RCVTPLMGHTSCVWTL  595 (656)
Q Consensus       538 --~~~~~~~~h~~~i~~l~~sp-~g~~L~s~~~dg---~I~iwD~~~--------~--------~~~~~~~~h~~~V~~l  595 (656)
                        .....-.++.. ...++|+| +|+++++-...+   .|.+..-..        +        .++..+.........+
T Consensus       186 f~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~  264 (354)
T 3a9g_A          186 FPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA  264 (354)
T ss_dssp             STTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred             CCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence              01111234433 45799999 666555432221   243332110        0        1222231122457788


Q ss_pred             EEc-------CCCCEEEEEECCCcEEEEeCCCC
Q 006220          596 AYS-------CEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       596 ~~s-------~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      +|.       .+|.++++.-..+.|...++...
T Consensus       265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN  297 (354)
T ss_dssp             EECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred             EEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence            883       56777776666778888887753

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.48  E-value=0.18  Score=50.78  Aligned_cols=188  Identities=10%  Similarity=0.086  Sum_probs=92.3

Q ss_pred             ccCCCEEEEEeC----CC-------eEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECC-------CcEEE
Q 006220          430 SPLGDFILSSSA----DT-------TIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-------RTARI  489 (656)
Q Consensus       430 spd~~~L~s~s~----Dg-------~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D-------g~i~l  489 (656)
                      ..++..++.|+.    ++       .+..||..+.+-...  +...... .+++.. ++..++.|+.+       ..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV-DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE-TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE-CCEEEEEcCccCCCCcccceEEE
Confidence            345677777773    11       166778765533221  1111111 122222 56777777754       24778


Q ss_pred             EECCCCceeEEecCCCCCe-eEEEEcCCCCEEEEEEC------CCcEEEEeCCCCeeEEEEecCCCC-eEEEEEcCCCCE
Q 006220          490 WSMDRIQPLRIMAGHLSDV-DCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRY  561 (656)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V-~~v~~~p~~~~l~tgs~------dg~V~iwd~~~~~~~~~~~~h~~~-i~~l~~sp~g~~  561 (656)
                      ||..+.+-...-....... .+++. .++..++.|+.      -..+.+||..+.+-...-...... -.+++. -++++
T Consensus       132 yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i  209 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKI  209 (318)
T ss_dssp             EETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE
T ss_pred             EeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEE
Confidence            8887654333211111111 11222 35666666653      245999999887544321111111 112222 25677


Q ss_pred             EEEEECC-----CcEEEEeCCCCeee--EeeeCCCccEEEEEEcCCCCEEEEEECC--------------CcEEEEeCCC
Q 006220          562 MASGDED-----GTIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSAD--------------CTVKLWDVTT  620 (656)
Q Consensus       562 L~s~~~d-----g~I~iwD~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~sgs~D--------------g~I~iWd~~~  620 (656)
                      ++.|+.+     ..+.+||+.+.+-.  ..+.........+.  .++.+++.||.+              ..+.+||+.+
T Consensus       210 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  287 (318)
T 2woz_A          210 VIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK  287 (318)
T ss_dssp             EEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred             EEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence            7777643     35778998765422  22221111112222  256777777654              3577888877


Q ss_pred             CCc
Q 006220          621 STK  623 (656)
Q Consensus       621 ~~~  623 (656)
                      .+-
T Consensus       288 ~~W  290 (318)
T 2woz_A          288 KEW  290 (318)
T ss_dssp             TEE
T ss_pred             CEe
Confidence            553

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.39  E-value=2.6  Score=50.46  Aligned_cols=241  Identities=11%  Similarity=0.082  Sum_probs=133.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC-
Q 006220          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG-  433 (656)
Q Consensus       355 ~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~-  433 (656)
                      +|+++-.+ .+|++|+..|.=.+|.+......         .            ............-+||.+++..... 
T Consensus       330 ssl~~l~~-g~lFvgS~~Gds~l~~~~~~~~~---------~------------~~~~~~~~~~~N~~PI~D~~v~d~~~  387 (1158)
T 3ei3_A          330 ECLTYLDN-GVVFVGSRLGDSQLVKLNVDSNE---------Q------------GSYVVAMETFTNLGPIVDMCVVDLER  387 (1158)
T ss_dssp             SEEEECST-TEEEEECSSSCEEEEEECSSCCT---------T------------SCCEEEEEEECCCCSEEEEEEECTTS
T ss_pred             cEEEEECC-CEEEEEEecCCcEEEEEecCCCC---------c------------cceEEeEeeecCcCCceeEEEEccCC
Confidence            45555444 47888988888888887642110         0            0011112222345788888775422 


Q ss_pred             ---CEEEEEe---CCCeEEEEeccCCcee-E--EeeCCCccEEEEEEe---cCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220          434 ---DFILSSS---ADTTIRLWSTKLNANL-V--CYKGHNYPVWDVQFN---PQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       434 ---~~L~s~s---~Dg~I~lwd~~~~~~~-~--~~~~h~~~V~~l~~s---p~~~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                         ..+++++   .+|+++++.-.-+-.. .  .+. ....+|.+...   ....|++.+..+.+ .++.+... .+...
T Consensus       388 ~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev  464 (1158)
T 3ei3_A          388 QGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEET  464 (1158)
T ss_dssp             SSCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEE
T ss_pred             CCCCeEEEEECcCCCCeEEEEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-ccccc
Confidence               3555554   3678888764322211 1  122 23567777653   24567877777666 55555321 22222


Q ss_pred             c--CCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-CCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          502 A--GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (656)
Q Consensus       502 ~--~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~  577 (656)
                      .  +-......++... .+..++=.+ ...|++.+...+..+..+.... ..|.+.+.+  +.+++.++ ++.+.++++.
T Consensus       465 ~~~gf~~~~~TL~~~~l~~~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~  540 (1158)
T 3ei3_A          465 ELMGFVDDQQTFFCGNVAHQQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIH  540 (1158)
T ss_dssp             CCTTCCSSSCEEEEEEETTTEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEE
T ss_pred             ccccccCCCCcEEEEEcCCCeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEee
Confidence            1  1111111121111 112333222 3467788876666666665433 357777665  34666665 6788888887


Q ss_pred             CCeeeEee-eCCCccEEEEEEcCC------CCEEEEEEC-CCcEEEEeCCCCCce
Q 006220          578 SGRCVTPL-MGHTSCVWTLAYSCE------GSLLASGSA-DCTVKLWDVTTSTKV  624 (656)
Q Consensus       578 ~~~~~~~~-~~h~~~V~~l~~s~~------~~~l~sgs~-Dg~I~iWd~~~~~~~  624 (656)
                      .++..... ..-...|.|+++.+.      +.+++.|.. |++|+|+++...+..
T Consensus       541 ~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~  595 (1158)
T 3ei3_A          541 PQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL  595 (1158)
T ss_dssp             TTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence            65432211 123457999999763      469999996 999999999865544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.30  E-value=2.8  Score=50.23  Aligned_cols=174  Identities=10%  Similarity=0.096  Sum_probs=106.1

Q ss_pred             eEEEEeccCCceeEEeeC-CCccEEEEEEec----CCCEEEEEE----------CCCcEEEEECCCCceeEEec-CCCCC
Q 006220          444 TIRLWSTKLNANLVCYKG-HNYPVWDVQFNP----QGHYFASSS----------HDRTARIWSMDRIQPLRIMA-GHLSD  507 (656)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp----~~~~l~sgs----------~Dg~i~lwd~~~~~~~~~~~-~~~~~  507 (656)
                      .|++.|..+++.+..+.- ....+.+++...    ...+|++|+          ..|.|++|++...+...... ...+.
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            477788777776655542 233455555332    246888886          34789999987443222211 33567


Q ss_pred             eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--CCeeeEee
Q 006220          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA--SGRCVTPL  585 (656)
Q Consensus       508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~--~~~~~~~~  585 (656)
                      |++++-- +| +|++|- ..+|++|++...+.++.-..+-..|..+.....|++++.|..-..|.++..+  .++....-
T Consensus       888 v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a  964 (1158)
T 3ei3_A          888 VYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA  964 (1158)
T ss_dssp             EEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE
T ss_pred             CEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE
Confidence            8877633 45 555553 5799999998765554222122223333333357899999887777776543  33333222


Q ss_pred             e-CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          586 M-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       586 ~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      . .+...++++.|-.+ ..++.+..+|+|.+......
T Consensus       965 ~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A          965 RDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp             ECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTT
T ss_pred             eecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCC
Confidence            2 23456788887544 46788999999999988763

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.18  E-value=0.13  Score=51.38  Aligned_cols=173  Identities=18%  Similarity=0.158  Sum_probs=88.4

Q ss_pred             CeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECC-----CcEEEEECCCCceeEEecCC--CCCeeEEEE
Q 006220          443 TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQPLRIMAGH--LSDVDCVRW  513 (656)
Q Consensus       443 g~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D-----g~i~lwd~~~~~~~~~~~~~--~~~V~~v~~  513 (656)
                      ..+..||..+..-...  +...... .+++. -++..++.|+.+     ..+.+||..+.+-...-...  .....++. 
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-  106 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCR-AGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-  106 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             CcEEEEcCcCCcEeEcccCCccccc-ceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-
Confidence            3577888776542221  1111111 12222 256677777754     35888898776533322111  11122222 


Q ss_pred             cCCCCEEEEEECCC-----cEEEEeCCCCeeEEEEecC--CCCeEEEEEcCCCCEEEEEECC-------CcEEEEeCCCC
Q 006220          514 HINCNYIATGSSDK-----TVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDED-------GTIMMWDLASG  579 (656)
Q Consensus       514 ~p~~~~l~tgs~dg-----~V~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g~~L~s~~~d-------g~I~iwD~~~~  579 (656)
                       -++..++.|+.++     .+.+||+.+.+-...-...  .....++.  -++++++.|+.+       ..+.+||+.+.
T Consensus       107 -~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~  183 (302)
T 2xn4_A          107 -LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTN  183 (302)
T ss_dssp             -ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred             -ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence             2566777777553     5888998877544321111  11112222  256666666542       35889998776


Q ss_pred             eeeE--eeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCCc
Q 006220          580 RCVT--PLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTK  623 (656)
Q Consensus       580 ~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~~  623 (656)
                      +-..  .+.........+.+  ++.+++.|+.+     +.+.+||+.+.+-
T Consensus       184 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  232 (302)
T 2xn4_A          184 EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW  232 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred             cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence            4322  22211111122222  57777887764     3688999877543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.08  E-value=0.15  Score=51.00  Aligned_cols=181  Identities=9%  Similarity=0.039  Sum_probs=93.2

Q ss_pred             EEEEEeC--CCeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECC----CcEEEEECCCCceeEEecCCC-
Q 006220          435 FILSSSA--DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQPLRIMAGHL-  505 (656)
Q Consensus       435 ~L~s~s~--Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D----g~i~lwd~~~~~~~~~~~~~~-  505 (656)
                      +++.|+.  ...+.+||..+.+-...  +.........+.  -++..++.|+.+    ..+.+||..+.+-...-.... 
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            3444543  35688888876543221  111111111222  256677777755    568889988765433222111 


Q ss_pred             -CCeeEEEEcCCCCEEEEEECC------CcEEEEeCCCCeeEEEEecCCCCe-EEEEEcCCCCEEEEEEC---------C
Q 006220          506 -SDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIGHRSMI-LSLAMSPDGRYMASGDE---------D  568 (656)
Q Consensus       506 -~~V~~v~~~p~~~~l~tgs~d------g~V~iwd~~~~~~~~~~~~h~~~i-~~l~~sp~g~~L~s~~~---------d  568 (656)
                       ....++.  -++..++.|+.+      ..+.+||..+.+-...-....... .+++. -++++++.|+.         -
T Consensus        92 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~  168 (306)
T 3ii7_A           92 RDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVL  168 (306)
T ss_dssp             CBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEEC
T ss_pred             ccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccccc
Confidence             1112222  256677777755      468999998876443211111111 11222 25666666653         3


Q ss_pred             CcEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCC
Q 006220          569 GTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTST  622 (656)
Q Consensus       569 g~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~  622 (656)
                      ..+.+||+.+.+-..  .+......-..+.+  ++.+++.||.+     ..+.+||+.+.+
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            458899988764322  22111111122222  56777777654     358889987754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.99  E-value=0.17  Score=51.97  Aligned_cols=141  Identities=11%  Similarity=-0.008  Sum_probs=66.3

Q ss_pred             CcEEEEECCCCceeEEecCCCC-Ce-eEEEEcCCCCEEEEEEC------CCcEEEEeC--CCCeeEEE--EecCCCCeEE
Q 006220          485 RTARIWSMDRIQPLRIMAGHLS-DV-DCVRWHINCNYIATGSS------DKTVRLWDV--SSGECVRI--FIGHRSMILS  552 (656)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~-~V-~~v~~~p~~~~l~tgs~------dg~V~iwd~--~~~~~~~~--~~~h~~~i~~  552 (656)
                      ..+.+||+.+.+-...-..... .- .+++.. ++..++.|+.      ...+..||+  .+..-...  +........+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            4788999887653332211111 11 222222 5556666653      345777887  44332221  1111111111


Q ss_pred             EEEcCCCCEEEEEECC----------------------CcEEEEeCCCCe--eeEeeeCCCccEEEEEEcCCCCEEEEEE
Q 006220          553 LAMSPDGRYMASGDED----------------------GTIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGS  608 (656)
Q Consensus       553 l~~sp~g~~L~s~~~d----------------------g~I~iwD~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~sgs  608 (656)
                      .+...++++++.|+.+                      ..+.+||+.+.+  .+..+......-.++  ..++++++.||
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG  324 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGG  324 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEee
Confidence            1223356777777632                      257789987653  333333222222222  24678888888


Q ss_pred             CCC------cEEEEeCCCCCceeecc
Q 006220          609 ADC------TVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       609 ~Dg------~I~iWd~~~~~~~~~~~  628 (656)
                      .++      .|.++++++++.....+
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            653      35566888777655443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.84  E-value=3.5  Score=46.90  Aligned_cols=223  Identities=10%  Similarity=0.116  Sum_probs=129.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      ..|.|+....+| .|.+|+.+| +..||........                            ........|.++.. .
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~----------------------------~~~~~~~~i~~i~~-~  111 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ----------------------------PETDFPTDVRTMAL-Q  111 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC----------------------------CSCCCCSCEEEEEE-E
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC----------------------------cccCCCceEEEEEe-c
Confidence            458888777666 566676665 7788865311000                            00001224666654 3


Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeEEee-----CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC---
Q 006220          432 LGDFILSSSADTTIRLWSTKLNANLVCYK-----GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---  503 (656)
Q Consensus       432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~---  503 (656)
                      ++ .|..|+.+ .|..++..++.. ..+.     .....|.++....+|.+.+ |+.+ -+..++..+.+.......   
T Consensus       112 ~g-~lWigt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~  186 (758)
T 3ott_A          112 GD-TLWLGALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHS  186 (758)
T ss_dssp             TT-EEEEEETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCT
T ss_pred             CC-cEEEEcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCcc
Confidence            44 56666665 588888876543 2331     1234588888877776544 5554 477788766543222111   


Q ss_pred             --CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220          504 --HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       504 --~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                        ....|.++...+++..|..|+. +-+..+|..+++...........|.++...++|.+.+ |+.+ -+.+++..++..
T Consensus       187 ~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~  263 (758)
T 3ott_A          187 SQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPL  263 (758)
T ss_dssp             TCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCC
T ss_pred             ccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcE
Confidence              1124788888777776666764 4688899887754332211234588888887776554 4444 478888766543


Q ss_pred             eEeeeC--------CCccEEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          582 VTPLMG--------HTSCVWTLAYSCEGSLLASGSADCTVKLW  616 (656)
Q Consensus       582 ~~~~~~--------h~~~V~~l~~s~~~~~l~sgs~Dg~I~iW  616 (656)
                      . .+..        ....|.++....+|.+.+ |+..| +.++
T Consensus       264 ~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~  303 (758)
T 3ott_A          264 Q-HIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLS  303 (758)
T ss_dssp             E-EECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEE
T ss_pred             E-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccc
Confidence            2 2211        124689998888887554 44455 5444

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.82  E-value=0.51  Score=47.35  Aligned_cols=143  Identities=7%  Similarity=0.021  Sum_probs=73.6

Q ss_pred             CCCEEEEEeCC--------CeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEEEC-C-----CcEEEEECCCC
Q 006220          432 LGDFILSSSAD--------TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSH-D-----RTARIWSMDRI  495 (656)
Q Consensus       432 d~~~L~s~s~D--------g~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sgs~-D-----g~i~lwd~~~~  495 (656)
                      ++..++.|+.+        ..+.+||..+.+-..  .+....... +++. -++..++.|+. +     ..+.+||..+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            45666666632        458888887654221  111111111 1222 35667777775 2     46888998775


Q ss_pred             ceeEEecC--CCCCeeEEEEcCCCCEEEEEECCC-----cEEEEeCCCCeeEEEEecCC--CCeEEEEEcCCCCEEEEEE
Q 006220          496 QPLRIMAG--HLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       496 ~~~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg-----~V~iwd~~~~~~~~~~~~h~--~~i~~l~~sp~g~~L~s~~  566 (656)
                      +-...-..  ......++.  -++..++.|+.++     .+.+||+.+.+-...-....  ....++.+  ++++++.|+
T Consensus       176 ~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG  251 (315)
T 4asc_A          176 EWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGG  251 (315)
T ss_dssp             EEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEE
T ss_pred             eEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECC
Confidence            43222111  111112222  2567777777654     58899998775443321111  11122222  567777776


Q ss_pred             CCC--------------cEEEEeCCCCe
Q 006220          567 EDG--------------TIMMWDLASGR  580 (656)
Q Consensus       567 ~dg--------------~I~iwD~~~~~  580 (656)
                      .++              .+.+||+.+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          252 FATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             ccccCcCCccccccccCcEEEecCCCCh
Confidence            532              36677876654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.80  E-value=0.69  Score=49.40  Aligned_cols=104  Identities=9%  Similarity=0.086  Sum_probs=61.6

Q ss_pred             ccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee--EEecC------CCCCeeEEEEcCC---CCEEEEEEC-------
Q 006220          464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL--RIMAG------HLSDVDCVRWHIN---CNYIATGSS-------  525 (656)
Q Consensus       464 ~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~--~~~~~------~~~~V~~v~~~p~---~~~l~tgs~-------  525 (656)
                      ...+.|+|.|+|+++++-...+.|++++..++...  ..+..      ....+..|+|+|+   +.+|+++..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            35679999999987666544457888876544432  22221      2345678999995   555554432       


Q ss_pred             ------CCcEEEEeCCCC--e---eEEEE---e-cCCCCeEEEEEcCCCCEEEEEEC
Q 006220          526 ------DKTVRLWDVSSG--E---CVRIF---I-GHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       526 ------dg~V~iwd~~~~--~---~~~~~---~-~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                            ...|.-|+...+  .   ....+   . ........|+|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  234555655322  1   11112   1 11235788999999987776553

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.65  E-value=0.021  Score=58.54  Aligned_cols=189  Identities=10%  Similarity=0.001  Sum_probs=106.8

Q ss_pred             CEEEEEeCCCeEEEEeccCCceeEEeeCC-CccEEEEEEe--cCCCEEEEE--ECCCcEEEEECCCCceeEEecC----C
Q 006220          434 DFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFN--PQGHYFASS--SHDRTARIWSMDRIQPLRIMAG----H  504 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~s--p~~~~l~sg--s~Dg~i~lwd~~~~~~~~~~~~----~  504 (656)
                      ..++.++.||.|.-.|..+|+.+..++.. ..++....-.  +.+..++.+  +.||.++.++..++.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46888999999999999999988887654 1222221100  112234433  5899999999887754433321    1


Q ss_pred             CCCeeE----EEEc----CCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC--CC-----eEEEEEc-----CCCCEEEE
Q 006220          505 LSDVDC----VRWH----INCNYIATGSSDKTVRLWDVSSGECVRIFIGHR--SM-----ILSLAMS-----PDGRYMAS  564 (656)
Q Consensus       505 ~~~V~~----v~~~----p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~--~~-----i~~l~~s-----p~g~~L~s  564 (656)
                      .+++..    +...    ..+..+++|+.+|.+.-.|+++|+.+..+....  +.     ..|....     -.+..|+.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            122211    0000    145688999999999999999999999886431  11     1112111     12456777


Q ss_pred             EECCCcEEEEeCCCCeeeEee-----eCCCc--cEE-EEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          565 GDEDGTIMMWDLASGRCVTPL-----MGHTS--CVW-TLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~~~~~~~-----~~h~~--~V~-~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      +..+..+.+.+ ++|+ +..+     ..+..  .+. +-..+.++.+ +.++.||.|.-.|..++....
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            77777777766 4453 2111     11100  000 0001123555 447788888888888777665

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.65  E-value=0.16  Score=48.26  Aligned_cols=141  Identities=16%  Similarity=0.061  Sum_probs=83.1

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee------EEee--CCCccEEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL------VCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~------~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~  493 (656)
                      ..+..++|+|++.+.++  .+|.+.-.+..+....      ..+-  +-.. -..+.|.|+|.+.++  .||.|+-++-.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            36679999998885555  6677666665442221      1110  1111 367899999988777  56998888753


Q ss_pred             CCce-------eEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee------EEEEe-cCCCCeEEEEEcCCC
Q 006220          494 RIQP-------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC------VRIFI-GHRSMILSLAMSPDG  559 (656)
Q Consensus       494 ~~~~-------~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~------~~~~~-~h~~~i~~l~~sp~g  559 (656)
                      +...       ..+-.+.-..+.+|.|.|+|.+.++.  |+.++-+..-++..      ...+. ..-.....+.|.++|
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            2111       11222233578999999999877766  77765443332211      11111 222344557788888


Q ss_pred             CEEEEEECCCcE
Q 006220          560 RYMASGDEDGTI  571 (656)
Q Consensus       560 ~~L~s~~~dg~I  571 (656)
                      .+.++.  +|.+
T Consensus       194 ~l~~v~--~g~~  203 (236)
T 1tl2_A          194 TLFGVQ--GGKF  203 (236)
T ss_dssp             CEEEEE--TTEE
T ss_pred             cEEEEe--CCeE
Confidence            776666  6644

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.19  Score=51.32  Aligned_cols=141  Identities=13%  Similarity=0.045  Sum_probs=77.4

Q ss_pred             eCCCeEEEEeccCCceeEEeeC----CCccEEE---EEE-----ecCCCEEEEEECCCcEEEEECCCCceeEEecCCCC-
Q 006220          440 SADTTIRLWSTKLNANLVCYKG----HNYPVWD---VQF-----NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-  506 (656)
Q Consensus       440 s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~---l~~-----sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~-  506 (656)
                      +.||.|..++..+|.....+..    ...|+..   ...     +..+..+++|+.+|++...|..+++.+..+..... 
T Consensus        64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~  143 (339)
T 2be1_A           64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKN  143 (339)
T ss_dssp             STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBC
T ss_pred             CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCc
Confidence            5788888888877644433321    1222221   000     01456789999999999999999999988863311 


Q ss_pred             ------CeeEEEEc-----CCCCEEEEEECCCcEEEEeCCCCeeEEE-----EecCCCC--e-EEEEEcCCCCEEEEEEC
Q 006220          507 ------DVDCVRWH-----INCNYIATGSSDKTVRLWDVSSGECVRI-----FIGHRSM--I-LSLAMSPDGRYMASGDE  567 (656)
Q Consensus       507 ------~V~~v~~~-----p~~~~l~tgs~dg~V~iwd~~~~~~~~~-----~~~h~~~--i-~~l~~sp~g~~L~s~~~  567 (656)
                            ...|....     ..+..++.|..+..+.+.+ ++|+ +..     +..+...  + .+-..+.++.+ +.++.
T Consensus       144 ~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~  220 (339)
T 2be1_A          144 GYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFR  220 (339)
T ss_dssp             C--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEET
T ss_pred             ccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECC
Confidence                  01122111     1245777777777777777 4553 211     1111000  0 00001224555 44678


Q ss_pred             CCcEEEEeCCCCeeeE
Q 006220          568 DGTIMMWDLASGRCVT  583 (656)
Q Consensus       568 dg~I~iwD~~~~~~~~  583 (656)
                      ||.|.-+|..+|..+-
T Consensus       221 dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          221 DKSLLASDLDFRIARW  236 (339)
T ss_dssp             TTEEEEECSTTCCEEE
T ss_pred             CCEEEEEECCCCcEEE
Confidence            8888888888777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.55  E-value=0.42  Score=57.29  Aligned_cols=230  Identities=11%  Similarity=0.170  Sum_probs=130.9

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEE
Q 006220          359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILS  438 (656)
Q Consensus       359 fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s  438 (656)
                      .+|..+.+|.-. ..+++|+|+....+..                            ... ...+|.-=.|-.+.. |+-
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klk----------------------------s~~-~~e~VvfWkWis~~~-l~l  121 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMK----------------------------AHT-MTDDVTFWKWISLNT-VAL  121 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhc----------------------------ccc-cCCCceEEEecCCCe-eEE
Confidence            456666666653 6789999987522111                            111 124566666764433 333


Q ss_pred             EeCCCeEEEEeccCC-ceeEEeeCC----CccEEEEEEecCCCEEEEEE-------CCCcEEEEECCCCceeEEecCCCC
Q 006220          439 SSADTTIRLWSTKLN-ANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGHLS  506 (656)
Q Consensus       439 ~s~Dg~I~lwd~~~~-~~~~~~~~h----~~~V~~l~~sp~~~~l~sgs-------~Dg~i~lwd~~~~~~~~~~~~~~~  506 (656)
                      .+ +..|.-|++... .++..+..|    ...|..-..+++..+++..|       -.|.+.+|+++.. ..+.+.||..
T Consensus       122 VT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~  199 (1630)
T 1xi4_A          122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA  199 (1630)
T ss_pred             Ec-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHh
Confidence            33 346999999742 333333333    45676777788888776554       3488999998764 3344556654


Q ss_pred             CeeEEEEc--C-CCCEEEEEEC---CCcEEEEeCCCC---ee------EEEEecC---CCCeEEEEEcCCCCEEEEEECC
Q 006220          507 DVDCVRWH--I-NCNYIATGSS---DKTVRLWDVSSG---EC------VRIFIGH---RSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       507 ~V~~v~~~--p-~~~~l~tgs~---dg~V~iwd~~~~---~~------~~~~~~h---~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                      ....+...  + ....++.+..   .+.++|.++...   ..      +..+...   ..-..++..|+....+...+.-
T Consensus       200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~  279 (1630)
T 1xi4_A          200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY  279 (1630)
T ss_pred             hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecC
Confidence            44333332  1 1223332222   368888888432   11      1111111   2234467888888888899999


Q ss_pred             CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      |.|.++|+.+|.++..-+-...+|...+-+....-++.....|.|.--.+...
T Consensus       280 G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          280 GYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             ceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence            99999999999988665444444544444433333444445665555555443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.54  E-value=0.18  Score=50.62  Aligned_cols=184  Identities=13%  Similarity=0.023  Sum_probs=94.1

Q ss_pred             CCCEEEEEeC----CCeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEEC----C-----CcEEEEECCCCc
Q 006220          432 LGDFILSSSA----DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSH----D-----RTARIWSMDRIQ  496 (656)
Q Consensus       432 d~~~L~s~s~----Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~----D-----g~i~lwd~~~~~  496 (656)
                      ++..++.|+.    -..+.+||..+.+-...  +....... +++.. ++..++.|+.    +     ..+.+||..+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            3555666653    23588888876543221  11111111 22222 5667777765    2     468888887654


Q ss_pred             eeEEec--CCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 006220          497 PLRIMA--GHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       497 ~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~d-----g~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      -...-.  .......++.+  ++..++.|+.+     ..+.+||..+.+-...-.  .......++.+  ++++++.|+.
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence            322211  11111222222  56666666543     468899988765433211  11111122222  5677777765


Q ss_pred             C-----CcEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCCc
Q 006220          568 D-----GTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTK  623 (656)
Q Consensus       568 d-----g~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~~  623 (656)
                      +     ..+.+||+.+.+-..  .+.........+.+  ++.+++.|+.+     ..+.+||+.+.+-
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence            4     458899987764322  12111111222233  67777777764     4688999877543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.38  E-value=0.97  Score=46.25  Aligned_cols=142  Identities=20%  Similarity=0.156  Sum_probs=83.4

Q ss_pred             CccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE--Ee----cCCCCCeeEEEEcCC---CCEEEEE---ECCCcEE
Q 006220          463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR--IM----AGHLSDVDCVRWHIN---CNYIATG---SSDKTVR  530 (656)
Q Consensus       463 ~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~--~~----~~~~~~V~~v~~~p~---~~~l~tg---s~dg~V~  530 (656)
                      -...+.|+|.|+|.++++--..|.|++++...+....  .+    .........|+++|+   +.+|++.   ..++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            3457899999999877766558999999866554322  12    123456789999995   3455443   2345566


Q ss_pred             EEeCCCC----------eeE-EEEe-cCCCCeEEEEEcCCCCEEEEEEC-------------CCcEEEEeCCCCe-----
Q 006220          531 LWDVSSG----------ECV-RIFI-GHRSMILSLAMSPDGRYMASGDE-------------DGTIMMWDLASGR-----  580 (656)
Q Consensus       531 iwd~~~~----------~~~-~~~~-~h~~~i~~l~~sp~g~~L~s~~~-------------dg~I~iwD~~~~~-----  580 (656)
                      -|....+          +.+ ..+. +.......|.|.|||.+.++.+.             .|.|.=.+.. ++     
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip~~n  189 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPAPGN  189 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBCTTC
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCccCCC
Confidence            6665441          111 1121 11223457999999987777542             2444444443 22     


Q ss_pred             -----eeEeeeCCCccEEEEEEcCCCCEEEEE
Q 006220          581 -----CVTPLMGHTSCVWTLAYSCEGSLLASG  607 (656)
Q Consensus       581 -----~~~~~~~h~~~V~~l~~s~~~~~l~sg  607 (656)
                           .+. -.+|.. ...++|+|+|.+.++-
T Consensus       190 Pf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~d  219 (347)
T 3das_A          190 PFPGSPVY-SYGHRN-VQGLAWDDKQRLFASE  219 (347)
T ss_dssp             SSTTCCEE-EBCCSB-CCEEEECTTCCEEEEE
T ss_pred             CCCCCeEE-eeCCCC-cceEEECCCCCEEEEe
Confidence                 111 125543 4689999988766554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.35  E-value=1.4  Score=44.03  Aligned_cols=144  Identities=11%  Similarity=0.067  Sum_probs=71.8

Q ss_pred             CCCEEEEEeCC-------CeEEEEeccCCceeEEeeCCCccE--EEEEEecCCCEEEEEEC------CCcEEEEECCCCc
Q 006220          432 LGDFILSSSAD-------TTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSSH------DRTARIWSMDRIQ  496 (656)
Q Consensus       432 d~~~L~s~s~D-------g~I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~sgs~------Dg~i~lwd~~~~~  496 (656)
                      ++..++.|+.+       ..+.+||..+.+-...-. ...+.  .+++. .++..++.|+.      -..+.+||+.+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            45666666653       347788877654322111 11111  11222 36667777764      2358899988765


Q ss_pred             eeEEecCC--CCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 006220          497 PLRIMAGH--LSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       497 ~~~~~~~~--~~~V~~v~~~p~~~~l~tgs~d-----g~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      -...-...  .....++.  -++..++.|+.+     ..+.+||+.+.+-...-.  ........+.  -++++++.|+.
T Consensus       187 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~  262 (318)
T 2woz_A          187 WKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGF  262 (318)
T ss_dssp             EEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred             EEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCe
Confidence            33321111  11112222  256666777643     357789988765433211  1111112222  24667777664


Q ss_pred             C--------------CcEEEEeCCCCee
Q 006220          568 D--------------GTIMMWDLASGRC  581 (656)
Q Consensus       568 d--------------g~I~iwD~~~~~~  581 (656)
                      +              ..+.+||+.+.+-
T Consensus       263 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W  290 (318)
T 2woz_A          263 AMIQLESKEFAPTEVNDIWKYEDDKKEW  290 (318)
T ss_dssp             CCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred             eccCCCCceeccceeeeEEEEeCCCCEe
Confidence            3              3477778766543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.13  E-value=0.27  Score=50.65  Aligned_cols=140  Identities=16%  Similarity=0.162  Sum_probs=77.9

Q ss_pred             cEEEEEEecCCCEEEEEECCCcEEEEECCCCc--eeE----EecCCCCCeeEEEEcCC---CCEEEEEE-C-------CC
Q 006220          465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLR----IMAGHLSDVDCVRWHIN---CNYIATGS-S-------DK  527 (656)
Q Consensus       465 ~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~--~~~----~~~~~~~~V~~v~~~p~---~~~l~tgs-~-------dg  527 (656)
                      ..+.|+|.|+|+.++++...|.|++++.+...  .+.    .+.........++++|+   +.+|+++. .       ..
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            45789999999834455678999999854321  111    11122345688999995   45555443 2       23


Q ss_pred             cEEEEeCCCC--e--eEE-EEecC------CCCeEEEEEcCCCCEEEEEECC-------------CcEEEEeCCCCe---
Q 006220          528 TVRLWDVSSG--E--CVR-IFIGH------RSMILSLAMSPDGRYMASGDED-------------GTIMMWDLASGR---  580 (656)
Q Consensus       528 ~V~iwd~~~~--~--~~~-~~~~h------~~~i~~l~~sp~g~~L~s~~~d-------------g~I~iwD~~~~~---  580 (656)
                      .|..|+...+  .  ... .+...      ......|+|.|||.+.++.+..             |.|.-+|.. +.   
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~~p~  177 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-GEIPD  177 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-SCCCT
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-CCCCC
Confidence            5666666533  1  111 12211      1123579999999665554432             456666653 22   


Q ss_pred             ----------eeEee-eCCCccEEEEEEcC-CCCEEEE
Q 006220          581 ----------CVTPL-MGHTSCVWTLAYSC-EGSLLAS  606 (656)
Q Consensus       581 ----------~~~~~-~~h~~~V~~l~~s~-~~~~l~s  606 (656)
                                ....+ .+|. ....++|+| ++.++++
T Consensus       178 ~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred             CCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence                      11111 2443 367899999 5655544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.95  E-value=3.4  Score=41.30  Aligned_cols=136  Identities=8%  Similarity=0.024  Sum_probs=82.4

Q ss_pred             EEccCCCEEEEEe----CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CCcEEEEECCCCceeEEec
Q 006220          428 SFSPLGDFILSSS----ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       428 ~~spd~~~L~s~s----~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~lwd~~~~~~~~~~~  502 (656)
                      .|++++++|+-+.    ....|...+++. .....+..+..    ..|++++..|+-.+. ...|...+++.....+.+.
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~  184 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD  184 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence            6777888887665    334555556653 33444443432    345777888776654 6788888988776655554


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECC--CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC--CCcEEEEeCC
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE--DGTIMMWDLA  577 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~d--g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~--dg~I~iwD~~  577 (656)
                      +   ... ..++|++.+|+-....  ..|..-++..+.. ..+..  ..+  ..|+|+|++|+-+..  .+.|..-++.
T Consensus       185 ~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          185 C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred             C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence            3   222 3456989988876644  3566667665543 33332  334  347888888876643  3566666664

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.82  E-value=0.72  Score=45.78  Aligned_cols=185  Identities=14%  Similarity=0.051  Sum_probs=96.1

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~  502 (656)
                      .|..++...... ++. . ||.|..|-......+-.-..-...|..++...+  +.+.-. ||.++.|-....-.+..-.
T Consensus        64 ~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~  137 (282)
T 3qhy_B           64 GVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA  137 (282)
T ss_dssp             CCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred             CEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc
Confidence            455555543222 233 4 889999976543222111111346777776643  333334 9999999765432221111


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      .....|..++...+.  .+.-+ ||.|+.|-......+..-..-...|..++..... .++.  .||.|..|=......+
T Consensus       138 ~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gql  211 (282)
T 3qhy_B          138 EAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQT  211 (282)
T ss_dssp             GGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTT
T ss_pred             cCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCC
Confidence            223456666654433  22233 7999999765422211111113457777765432 2333  5899999976543222


Q ss_pred             EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       583 ~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ..-......|..++.......++  . ||.|..|=-....
T Consensus       212 g~p~~~~~~v~~i~~G~~h~~al--~-~g~v~~wG~n~~g  248 (282)
T 3qhy_B          212 TVPTEALSGVSAIASGEWYSLAL--K-NGKVIAWGSSRTA  248 (282)
T ss_dssp             CCCGGGGSSCCEEEECSSCEEEE--E-TTEEEEESTTCCC
T ss_pred             CCCcccCCCceEEEcCCCEEEEE--E-CCEEEEecCCCCc
Confidence            11001113466776654433333  3 9999999876644

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.71  E-value=4.9  Score=42.09  Aligned_cols=158  Identities=9%  Similarity=0.089  Sum_probs=101.7

Q ss_pred             cCEEEEEEccCCCEEEEEeC-------CCeEEEEeccCCceeEEeeCCCccEEEEEEecC---CCEEEEEECC---CcEE
Q 006220          422 GPVYSASFSPLGDFILSSSA-------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---GHYFASSSHD---RTAR  488 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~-------Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~---~~~l~sgs~D---g~i~  488 (656)
                      ..|..-..+++.++++..+-       .|.+.+|+.+.+ .-..+.||......+....+   ...|+.+...   +.++
T Consensus       151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh  229 (494)
T 1bpo_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  229 (494)
T ss_dssp             CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEE
T ss_pred             ceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence            45777777888888764432       478899998844 44567777665544433221   1244444432   7899


Q ss_pred             EEECCCC---c------eeEEecC---CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEc
Q 006220          489 IWSMDRI---Q------PLRIMAG---HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS  556 (656)
Q Consensus       489 lwd~~~~---~------~~~~~~~---~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~s  556 (656)
                      +.++...   .      .+..+..   ...-..++..++....++.-+.-|.|.+||+.++.++..-+-...+|...+-+
T Consensus       230 i~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~  309 (494)
T 1bpo_A          230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH  309 (494)
T ss_dssp             EEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred             EEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEeccc
Confidence            9998643   1      1111111   12334577888888899999999999999999999987766555666665555


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCe
Q 006220          557 PDGRYMASGDEDGTIMMWDLASGR  580 (656)
Q Consensus       557 p~g~~L~s~~~dg~I~iwD~~~~~  580 (656)
                      ....-+++....|.|.--.+....
T Consensus       310 ~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          310 EATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             TTTTEEEEEETTCEEEEEEECTTT
T ss_pred             CCCCcEEEEccCceEEEEEEcccc
Confidence            554455555577777666665543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.58  E-value=1.7  Score=46.91  Aligned_cols=188  Identities=11%  Similarity=0.127  Sum_probs=112.6

Q ss_pred             CCCEEEEEe-CCCeEEEEeccCCceeEEeeC-CCccEEEEEEe--cCCCEEEEEEC-------CCcEE---------E--
Q 006220          432 LGDFILSSS-ADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFN--PQGHYFASSSH-------DRTAR---------I--  489 (656)
Q Consensus       432 d~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~s--p~~~~l~sgs~-------Dg~i~---------l--  489 (656)
                      ||++|+.-. .+..|-..+++..++-..+.. ....+.+++|-  |+..|+++++.       ||...         +  
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~  220 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN  220 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence            577887766 466788889988887665543 35568888886  68888888874       33311         1  


Q ss_pred             -EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC---------------CcEEEEeC-------------------
Q 006220          490 -WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---------------KTVRLWDV-------------------  534 (656)
Q Consensus       490 -wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---------------g~V~iwd~-------------------  534 (656)
                       .|.++.+....+. -.+....+...+++.+.++.+.+               ..+.++|+                   
T Consensus       221 ~iD~~tm~v~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g  299 (638)
T 3sbq_A          221 AIDAETMEMAFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK  299 (638)
T ss_dssp             EEETTTCSEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             EEcCCccEEEEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence             1222222111111 01234445567778887776532               12344433                   


Q ss_pred             ------CC----CeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCC------ee-------eEeeeCCCc
Q 006220          535 ------SS----GECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG------RC-------VTPLMGHTS  590 (656)
Q Consensus       535 ------~~----~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~------~~-------~~~~~~h~~  590 (656)
                            +.    +..+..+..-......+.++|||+++++++ .+.++.++|+...      +.       +.... -.-
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~Gl  378 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGL  378 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCS
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCC
Confidence                  32    111111111112334678999999988765 6789999998742      11       22222 234


Q ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          591 CVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       591 ~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      .....+|.++|....|.--|..|.-|++...
T Consensus       379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             cccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            5678899999966666779999999999753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.51  E-value=2.4  Score=47.86  Aligned_cols=150  Identities=8%  Similarity=0.064  Sum_probs=81.5

Q ss_pred             CCCEEEEEeCC------CeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEEECCC--cEEEEECCCCceeEEe
Q 006220          432 LGDFILSSSAD------TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLRIM  501 (656)
Q Consensus       432 d~~~L~s~s~D------g~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sgs~Dg--~i~lwd~~~~~~~~~~  501 (656)
                      ++..++.|+.+      ..+.+||..+.+-..  ....... -.+++...++..++.||.++  .+.+||..+..-...-
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            56677777653      357888887643221  1111111 11233323788888888654  6899998876433221


Q ss_pred             c-----CCCCCeeEEEEcCC-CCEEEEEEC--C-----CcEEEEeCCCCee-----EEEEec---CCCCeEEEEEcCCCC
Q 006220          502 A-----GHLSDVDCVRWHIN-CNYIATGSS--D-----KTVRLWDVSSGEC-----VRIFIG---HRSMILSLAMSPDGR  560 (656)
Q Consensus       502 ~-----~~~~~V~~v~~~p~-~~~l~tgs~--d-----g~V~iwd~~~~~~-----~~~~~~---h~~~i~~l~~sp~g~  560 (656)
                      .     .......++.+..+ +..++.|+.  +     ..+.+||+.+...     ...+..   ....-.+++...+++
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~  609 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK  609 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence            1     11122234555555 566677765  2     4588999988761     112211   111112233333367


Q ss_pred             EEEEEEC--------CCcEEEEeCCCCeee
Q 006220          561 YMASGDE--------DGTIMMWDLASGRCV  582 (656)
Q Consensus       561 ~L~s~~~--------dg~I~iwD~~~~~~~  582 (656)
                      +++.||.        ...|.+||+.+.+-.
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            7777774        346999999877543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.22  E-value=6.8  Score=41.65  Aligned_cols=250  Identities=14%  Similarity=0.142  Sum_probs=120.7

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          352 NGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       352 ~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ..-+.|+|.|||+ .|+++...|.|++++............+.         .+....       ...+..+....|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~---------~~~~~g-------~~~~~e~Gllgia~~   77 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIH---------KLVQSG-------IKGGDERGLLSLAFH   77 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECT---------TTBCCC-------CSSSCCCSEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCc---------ceeccC-------ccccCCCcceeeEeC
Confidence            3567899999996 44455688999999643211000000000         000000       000224567889999


Q ss_pred             cC----CCEEEEEeC--C----------CeEEEEeccCC----------ceeEEee--CCCccEEEEEEecCCCEEEEEE
Q 006220          431 PL----GDFILSSSA--D----------TTIRLWSTKLN----------ANLVCYK--GHNYPVWDVQFNPQGHYFASSS  482 (656)
Q Consensus       431 pd----~~~L~s~s~--D----------g~I~lwd~~~~----------~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs  482 (656)
                      |+    +.+.++-+.  +          ..|.-|.+..+          +.+..+.  ........|.|.|+|.++++.+
T Consensus        78 P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G  157 (463)
T 2wg3_C           78 PNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG  157 (463)
T ss_dssp             TTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred             CCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence            86    333333221  1          13444555321          1222222  2223467899999998877766


Q ss_pred             CCC-----------------cEEEEECCCC--------------------ceeEEecCCCCCeeEEEEcCC-----CC-E
Q 006220          483 HDR-----------------TARIWSMDRI--------------------QPLRIMAGHLSDVDCVRWHIN-----CN-Y  519 (656)
Q Consensus       483 ~Dg-----------------~i~lwd~~~~--------------------~~~~~~~~~~~~V~~v~~~p~-----~~-~  519 (656)
                      ..+                 .|.-.+.+..                    .+...-.+|.+ ...++|+|.     |. +
T Consensus       158 d~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~  236 (463)
T 2wg3_C          158 DGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLT  236 (463)
T ss_dssp             CTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEE
T ss_pred             CCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceE
Confidence            433                 2333343331                    01111224433 457899986     33 4


Q ss_pred             EEEEECCC----cEEEEeCCCC------eeEEEEecCC-CCeEEEEEcC-------CCCEEEEEECCCcEEEEeCCCCee
Q 006220          520 IATGSSDK----TVRLWDVSSG------ECVRIFIGHR-SMILSLAMSP-------DGRYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       520 l~tgs~dg----~V~iwd~~~~------~~~~~~~~h~-~~i~~l~~sp-------~g~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                      ++.+...|    .-.|..+..+      .++..+..|. ..++.+.|-.       .|.+|+ +...+.|....+.....
T Consensus       237 ~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~  315 (463)
T 2wg3_C          237 ILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTK  315 (463)
T ss_dssp             EEEECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----
T ss_pred             EEecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCc
Confidence            44443212    2334444333      2334443221 4677777753       234554 44447766665543321


Q ss_pred             ---eEee-e--------CCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCC
Q 006220          582 ---VTPL-M--------GHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVT  619 (656)
Q Consensus       582 ---~~~~-~--------~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~  619 (656)
                         ...+ .        .....+.++...|||.++++....     ..=+||.+.
T Consensus       316 ~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~  370 (463)
T 2wg3_C          316 QWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV  370 (463)
T ss_dssp             CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred             eeeEEEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence               1111 1        123678999999999988877621     233567765

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.89  E-value=1.4  Score=49.71  Aligned_cols=192  Identities=11%  Similarity=0.071  Sum_probs=102.7

Q ss_pred             cCCCEEEEEeCC----CeEEEEeccCCceeEEe-e------CCCccEEEEEEec-CCCEEEEEECCC------cEEEEEC
Q 006220          431 PLGDFILSSSAD----TTIRLWSTKLNANLVCY-K------GHNYPVWDVQFNP-QGHYFASSSHDR------TARIWSM  492 (656)
Q Consensus       431 pd~~~L~s~s~D----g~I~lwd~~~~~~~~~~-~------~h~~~V~~l~~sp-~~~~l~sgs~Dg------~i~lwd~  492 (656)
                      .++..++.|+.+    ..+.+||..+++-...- .      .....-.+++..+ ++..++.||.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            356666777643    45888888766543322 1      0111112333333 677778887543      5778888


Q ss_pred             CCCceeEEecCCCCC-eeEEEEcCCCCEEEEEECCC--cEEEEeCCCCeeEEEEe-----cCCCCeEEEEEcCC-CCEEE
Q 006220          493 DRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDK--TVRLWDVSSGECVRIFI-----GHRSMILSLAMSPD-GRYMA  563 (656)
Q Consensus       493 ~~~~~~~~~~~~~~~-V~~v~~~p~~~~l~tgs~dg--~V~iwd~~~~~~~~~~~-----~h~~~i~~l~~sp~-g~~L~  563 (656)
                      .+.+-...-...... -.+++...++..++.|+.++  .+.+||..+..-...-.     .......++.+..+ +++++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            775432221111111 11223324777888887654  79999998875433221     11122233555655 66777


Q ss_pred             EEEC--C-----CcEEEEeCCCCee-----eEeeeC----CCccEEEEEEcCCCCEEEEEEC--------CCcEEEEeCC
Q 006220          564 SGDE--D-----GTIMMWDLASGRC-----VTPLMG----HTSCVWTLAYSCEGSLLASGSA--------DCTVKLWDVT  619 (656)
Q Consensus       564 s~~~--d-----g~I~iwD~~~~~~-----~~~~~~----h~~~V~~l~~s~~~~~l~sgs~--------Dg~I~iWd~~  619 (656)
                      .||.  +     +.+.+||+.+...     ...+..    ..... +++...++.+++.||.        ...|.+||+.
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            7765  2     4588999887661     111111    11111 2222333677777774        3468999998


Q ss_pred             CCCc
Q 006220          620 TSTK  623 (656)
Q Consensus       620 ~~~~  623 (656)
                      +.+-
T Consensus       635 t~~W  638 (695)
T 2zwa_A          635 SETL  638 (695)
T ss_dssp             TTEE
T ss_pred             CCeE
Confidence            7654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.14  E-value=1.2  Score=53.35  Aligned_cols=194  Identities=13%  Similarity=0.199  Sum_probs=119.1

Q ss_pred             EccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEecCC---
Q 006220          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGH---  504 (656)
Q Consensus       429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~-~~~~~~~~~~---  504 (656)
                      .+|..+.++.=+ ..++.|+|+.+...+..+.- ..+|.--.|-... .++..+ +..|+-|++.. ..|+..+..|   
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L  148 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL  148 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence            455555554443 57899999998887776654 3456555665443 344333 46799999973 4566666544   


Q ss_pred             -CCCeeEEEEcCCCCEEEEEE-------CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEc--CC-CCEEEEEE---CCCc
Q 006220          505 -LSDVDCVRWHINCNYIATGS-------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMS--PD-GRYMASGD---EDGT  570 (656)
Q Consensus       505 -~~~V~~v~~~p~~~~l~tgs-------~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~s--p~-g~~L~s~~---~dg~  570 (656)
                       ...|..-..+++.++++..+       ..|.+.+|.+..+.. +.+.||.+....+...  +. ...++.+.   ..+.
T Consensus       149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k  227 (1630)
T 1xi4_A          149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  227 (1630)
T ss_pred             ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence             34566667778888877533       357888998765433 3345665544333332  11 12222222   1368


Q ss_pred             EEEEeCCCC---eeeEe-----e-e---CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          571 IMMWDLASG---RCVTP-----L-M---GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       571 I~iwD~~~~---~~~~~-----~-~---~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      ++|-++...   .....     + .   .-.....++..|+.-.++...+.-|.|.++|+.++..+...
T Consensus       228 Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence            999988543   11110     1 0   11233457778887788889999999999999999887644

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.59  E-value=1  Score=45.90  Aligned_cols=142  Identities=11%  Similarity=0.111  Sum_probs=70.8

Q ss_pred             CCCEEEEEeC-CCeEEEEeccC--C--ceeEEee-CCCccEEEEEEecCCCEEEEEEC-C---------CcEEEEECCCC
Q 006220          432 LGDFILSSSA-DTTIRLWSTKL--N--ANLVCYK-GHNYPVWDVQFNPQGHYFASSSH-D---------RTARIWSMDRI  495 (656)
Q Consensus       432 d~~~L~s~s~-Dg~I~lwd~~~--~--~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~-D---------g~i~lwd~~~~  495 (656)
                      ++..++.|+. ...+.++|..+  .  ..+..+. ...... +++.. ++..++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            4555566654 34688888863  2  1121112 111111 22222 5667777765 2         46888898775


Q ss_pred             ceeEEecCC-CCCeeEEEEcCCCCEEEEEECC---------------------------------------CcEEEEeCC
Q 006220          496 QPLRIMAGH-LSDVDCVRWHINCNYIATGSSD---------------------------------------KTVRLWDVS  535 (656)
Q Consensus       496 ~~~~~~~~~-~~~V~~v~~~p~~~~l~tgs~d---------------------------------------g~V~iwd~~  535 (656)
                      +-...-... .......+...++..++.|+.+                                       ..+.+||..
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~  176 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS  176 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence            433221111 1111111122466777778754                                       579999998


Q ss_pred             CCeeEEEEecCC-CCe-EEEEEcCCCCEEEEEEC------CCcEEEEeC
Q 006220          536 SGECVRIFIGHR-SMI-LSLAMSPDGRYMASGDE------DGTIMMWDL  576 (656)
Q Consensus       536 ~~~~~~~~~~h~-~~i-~~l~~sp~g~~L~s~~~------dg~I~iwD~  576 (656)
                      +.+-...-.... ... .+++.. ++++++.|+.      ...+.+||+
T Consensus       177 ~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          177 TQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             TTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             CCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence            775443322111 111 223332 5666666653      345777876

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=90.98  E-value=0.23  Score=39.30  Aligned_cols=30  Identities=23%  Similarity=0.427  Sum_probs=27.2

Q ss_pred             hHHHHHHHHHHHHhcCccHHHHHHHHHHhc
Q 006220            3 ELQVVEFVATYLKKKGFSEAENALQAEIQR   32 (656)
Q Consensus         3 ~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~   32 (656)
                      .++|+++|++||...||..+-++||.|+..
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~   39 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAEL   39 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcC
Confidence            368999999999999999999999999653

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.41  E-value=2.9  Score=41.33  Aligned_cols=185  Identities=18%  Similarity=0.061  Sum_probs=96.7

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~  502 (656)
                      .|..++...  .+.+.-. ||.|..|-......+-.-......|..++.... +.++. . ||.++.|-....-.+..-.
T Consensus        25 ~i~~ia~G~--~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           25 GVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SCCEEEECS--SEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEeCC--CeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence            455555543  2222234 889999976543322111112235666766533 33444 4 8999999765422221111


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      .-...|..++...+  +.++-+ +|.|+.|-......+.........|..++...+  +.+.-. ||.|..|-......+
T Consensus        99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gql  172 (282)
T 3qhy_B           99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQT  172 (282)
T ss_dssp             GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTT
T ss_pred             ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCC
Confidence            11245777766544  333344 999999976542221111112345777766533  333334 799999976542222


Q ss_pred             EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       583 ~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      ..-..-...|..++...+.. ++.  .||.|..|-.....
T Consensus       173 g~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~g  209 (282)
T 3qhy_B          173 TVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYK  209 (282)
T ss_dssp             SCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTS
T ss_pred             CCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCC
Confidence            11111124577777654433 333  59999999876543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=87.68  E-value=2  Score=46.40  Aligned_cols=121  Identities=11%  Similarity=0.022  Sum_probs=76.7

Q ss_pred             cEEEEECCC----CceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCC------ee-------EEEEecCC
Q 006220          486 TARIWSMDR----IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG------EC-------VRIFIGHR  547 (656)
Q Consensus       486 ~i~lwd~~~----~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~------~~-------~~~~~~h~  547 (656)
                      .+.+.|.+.    +..+..+-.-......+..+|+|+++++++ -+.+|.++|++.-      +.       +.... -.
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~G  377 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LG  377 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CC
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CC
Confidence            356666654    222222222334556788999999998766 5789999998731      11       22222 22


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----------eeeEeeeCCCccEEEEEE------cCCCCEEEEEE
Q 006220          548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASG----------RCVTPLMGHTSCVWTLAY------SCEGSLLASGS  608 (656)
Q Consensus       548 ~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~----------~~~~~~~~h~~~V~~l~~------s~~~~~l~sgs  608 (656)
                      -.....+|.++|....+..-|..|.-|++...          ..+.++.-|-.+- .+.-      .++|++|++..
T Consensus       378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred             CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence            34567899999966666779999999998643          3455555554332 2222      56889998875

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=85.86  E-value=30  Score=34.45  Aligned_cols=186  Identities=9%  Similarity=0.049  Sum_probs=111.5

Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeE---------EeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee---
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLV---------CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL---  498 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~---------~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~---  498 (656)
                      ++..++++.+.+|.|+--.+.......         .++.. ..+..+........++..+..|.++-.........   
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            456678899999999988766442211         12222 33445555556667888888998877765321111   


Q ss_pred             ---------EEecCCCCCeeEEEEcC---CCCEEEEEECCCcEEEEeCCC-------CeeEEEEecCCCCeEEEEEcCCC
Q 006220          499 ---------RIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSS-------GECVRIFIGHRSMILSLAMSPDG  559 (656)
Q Consensus       499 ---------~~~~~~~~~V~~v~~~p---~~~~l~tgs~dg~V~iwd~~~-------~~~~~~~~~h~~~i~~l~~sp~g  559 (656)
                               ..+.. ...|.++...+   +..+++..+..|.++...+..       |.....+.. ...+..+.....+
T Consensus        85 ~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~  162 (312)
T 1suu_A           85 SKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD  162 (312)
T ss_dssp             ---CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred             CCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence                     01111 22344443322   467888899999999887742       222222222 4456666555556


Q ss_pred             CEEEEEECCCcEEEEeCCC---------CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          560 RYMASGDEDGTIMMWDLAS---------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       560 ~~L~s~~~dg~I~iwD~~~---------~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      ..++..+.+|.+..+....         |.....+.. ...|.++..-.++..+++.+..|..+...+..
T Consensus       163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            6788889999998887643         222222222 34566666655666788899999998888754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.92  E-value=13  Score=43.51  Aligned_cols=39  Identities=18%  Similarity=0.290  Sum_probs=33.7

Q ss_pred             CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe
Q 006220          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI  544 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~  544 (656)
                      ..+.+++..++..+++|-+.|+++|+|++.+++++.+..
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            356777888888999999999999999999999988753

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=82.83  E-value=1.4  Score=35.01  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=31.9

Q ss_pred             CchHHHHHHHHHHHHhcCccHHHHHHHHHHhcCCC
Q 006220            1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKS   35 (656)
Q Consensus         1 ~~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~   35 (656)
                      ++.+++|.+|-.||+.-||..|--+|..|+...+.
T Consensus         3 itsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~   37 (90)
T 2xtc_A            3 ITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQS   37 (90)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGS
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCcc
Confidence            36789999999999999999999999999988764

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=82.02  E-value=47  Score=33.79  Aligned_cols=173  Identities=10%  Similarity=0.006  Sum_probs=86.1

Q ss_pred             CEEEEEeCCCeEEEEeccC-CceeEEe--eCCCccEEEEEEec--CCCEEEEEECCC----cEEEEECCCCceeEEecC-
Q 006220          434 DFILSSSADTTIRLWSTKL-NANLVCY--KGHNYPVWDVQFNP--QGHYFASSSHDR----TARIWSMDRIQPLRIMAG-  503 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~-~~~~~~~--~~h~~~V~~l~~sp--~~~~l~sgs~Dg----~i~lwd~~~~~~~~~~~~-  503 (656)
                      ..|+.|+..| +.+++... +.....+  ......|.+|++.|  .+..+ +++..|    .|.. ..+.++.-..+.. 
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~-~g~~~g~~g~gl~~-s~D~G~tW~~~~~~   99 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERML-MAARTGHLGPTVFR-SDDGGGNWTEATRP   99 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEE-EEEEC--CCEEEEE-ESSTTSCCEECSBC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEE-EEecCCCCCccEEE-eCCCCCCceECCcc
Confidence            3566777666 55555432 2222221  12345699999998  44444 444444    3333 2333333222221 


Q ss_pred             -------------CCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCeeEEEEec-------------------CCCC
Q 006220          504 -------------HLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIG-------------------HRSM  549 (656)
Q Consensus       504 -------------~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~~~~~~~~~-------------------h~~~  549 (656)
                                   ....|.++++.|.  ...+++++..+.|...+ ..|+.-..+..                   ....
T Consensus       100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~  178 (394)
T 3b7f_A          100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK  178 (394)
T ss_dssp             CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred             ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence                         1124778888872  56677766666665543 22322222211                   1235


Q ss_pred             eEEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeeEeeeC-----C--------CccEEEEEEcCC-CCEEEEEECCC
Q 006220          550 ILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMG-----H--------TSCVWTLAYSCE-GSLLASGSADC  611 (656)
Q Consensus       550 i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~~~~~~~-----h--------~~~V~~l~~s~~-~~~l~sgs~Dg  611 (656)
                      +.+|.+.|. ...|+.+..++.|...+ ..|+....+..     +        ...+.++.++|. ...|..++..+
T Consensus       179 i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          179 MHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             EEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             eeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            789999883 34445554444444332 22332222211     0        124889999985 35666666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	656
d2nxpa1	149	d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human	7e-53
d2j4ba1	131	d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Enceph	2e-50
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-49
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-40
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-26
d2j49a1	134	d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Sacch	5e-48
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-37
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-34
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-37
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-27
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-19
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-30
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-28
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-27
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-26
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-17
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-30
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-24
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-19
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-27
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-19
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-27
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-21
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-21
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-21
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-18
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-18
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-20
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-13
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-20
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-20
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-18
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-17
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-20
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-20
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-20
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-15
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-15
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-19
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-18
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-15
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-10
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-18
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-16
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-13
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-18
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-14
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-16
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-11
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-15
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-14
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-13
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-12
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-10
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	9e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-12
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	6e-10
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	3e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	5e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	3e-04
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	0.001
d1jofa_	365	b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz	0.004

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  176 bits (448), Expect = 7e-53
 Identities = 43/148 (29%), Positives = 79/148 (53%), Gaps = 1/148 (0%)

Query: 47  DPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVA 106
            P++S     +   +  P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +++LV 
Sbjct: 1   QPDVSAVLSAY-NQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVY 59

Query: 107 KGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYS 166
             H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++I + S
Sbjct: 60  NQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 119

Query: 167 YELLLQYLHKTQSTKMLGIINERINFQV 194
           Y+LL ++L + Q+ ++  I+ E +   +
Sbjct: 120 YQLLKRHLQEKQNNQIWNIVQEHLYIDI 147

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

 Score =  169 bits (430), Expect = 2e-50
 Identities = 42/131 (32%), Positives = 82/131 (62%), Gaps = 1/131 (0%)

Query: 67  YQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEM 126
            +  Y  L++W   SLDL+K++LL +LYP+FIH + DL+ +    EA+ FF  +R DH  
Sbjct: 2   METSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY- 60

Query: 127 MHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGII 186
               ++++ E + +  H+ E  FA++ ++SK ++ + +Y+++LL+ +L +   T +L I+
Sbjct: 61  NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKIL 120

Query: 187 NERINFQVSPG 197
           N+ ++ +V  G
Sbjct: 121 NQHLDIKVYVG 131

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  173 bits (438), Expect = 2e-49
 Identities = 73/307 (23%), Positives = 126/307 (41%), Gaps = 34/307 (11%)

Query: 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE--------- 395
           Y      + +         S++     D+++KVWD      +    G             
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 396 -----NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
                + +      +             GH   V S S  P GD I+S+S D TI++W  
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
           +    +  + GH   V  V+ N  G   AS S+D+T R+W +   +    +  H   V+C
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 511 VRWHINCNYIA--------------------TGSSDKTVRLWDVSSGECVRIFIGHRSMI 550
           + W    +Y +                    +GS DKT+++WDVS+G C+   +GH + +
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD 610
             +     G+++ S  +D T+ +WD  + RC+  L  H   V +L +      + +GS D
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 310

Query: 611 CTVKLWD 617
            TVK+W+
Sbjct: 311 QTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  147 bits (371), Expect = 3e-40
 Identities = 66/280 (23%), Positives = 112/280 (40%), Gaps = 64/280 (22%)

Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
           P   ++ Y L  GH  PV    F P+   ++S+S D TI++W  +        KGH   V
Sbjct: 5   PRPPEK-YAL-SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62

Query: 467 WDVQ------------------------------------------FNPQGHYFASSSHD 484
            D+                                             P G +  S+S D
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122

Query: 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI 544
           +T ++W +     ++   GH   V  VR + +   IA+ S+D+TVR+W V++ EC     
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

Query: 545 GHRSMILSLA--------------------MSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
            HR ++  ++                        G ++ SG  D TI MWD+++G C+  
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242

Query: 585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
           L+GH + V  + +   G  + S + D T+++WD      +
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 282

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (267), Expect = 3e-26
 Identities = 55/176 (31%), Positives = 88/176 (50%)

Query: 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
            GH  PV  V F+P      S+S D T ++W  +     R + GH   V  + +  +   
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73

Query: 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
           +A+ S+D T++LWD    EC+R   GH   + S+++ P+G ++ S   D TI MW++ +G
Sbjct: 74  LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133

Query: 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNR 635
            CV    GH   V  +  + +G+L+AS S D TV++W V T     +  E      
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} Length = 134

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  162 bits (412), Expect = 5e-48
 Identities = 45/134 (33%), Positives = 80/134 (59%), Gaps = 4/134 (2%)

Query: 64  PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFRED 123
           P  Y   YS L++W  SSL++YK EL +++YP+FI+ F++LVAK     AR FF+ F  D
Sbjct: 1   PENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNP-VYARRFFDRFSPD 59

Query: 124 HEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---T 180
            +  H  ++ +L  V S  H++E E A + +  K  I + + +  LLL +L++ +S   +
Sbjct: 60  FKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGS 119

Query: 181 KMLGIINERINFQV 194
            ++ +IN+ ++  +
Sbjct: 120 LIISVINQHLDPNI 133

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  141 bits (354), Expect = 1e-37
 Identities = 61/285 (21%), Positives = 104/285 (36%), Gaps = 19/285 (6%)

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE---------------- 395
             +       D  L+     D  L +WD     +                          
Sbjct: 56  AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115

Query: 396 -NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA 454
             D       +         +          S       + I++SS DTT  LW  +   
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ 175

Query: 455 NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH 514
               + GH   V  +   P    F S + D +A++W +      +   GH SD++ + + 
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235

Query: 515 INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIM 572
            N N  ATGS D T RL+D+ + + +  +     +  I S++ S  GR + +G +D    
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295

Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
           +WD         L GH + V  L  + +G  +A+GS D  +K+W+
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  130 bits (327), Expect = 5e-34
 Identities = 52/275 (18%), Positives = 92/275 (33%), Gaps = 48/275 (17%)

Query: 397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL 456
             T   D +G    +   TL +GH   +Y+  +      ++S+S D  + +W +     +
Sbjct: 32  QITNNIDPVGRIQMRTRRTL-RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV 90

Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSS---------------------------------- 482
                 +  V    + P G+Y A                                     
Sbjct: 91  HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150

Query: 483 -----------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
                       D T  +W ++  Q      GH  DV  +    +     +G+ D + +L
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210

Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI--MMWDLASGRCVTPLMGHT 589
           WDV  G C + F GH S I ++   P+G   A+G +D T                     
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270

Query: 590 SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
             + ++++S  G LL +G  D    +WD   + + 
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.0 bits (224), Expect = 2e-20
 Identities = 40/230 (17%), Positives = 78/230 (33%), Gaps = 52/230 (22%)

Query: 439 SSADTTIRLWSTKLNA----NLVC---YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
           + AD T+   +  ++      +      +GH   ++ + +        S+S D    IW 
Sbjct: 24  ACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD 83

Query: 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-- 549
                 +  +    S V    +  + NY+A G  D    ++++ + E         +   
Sbjct: 84  SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT 143

Query: 550 -------------------------------------------ILSLAMSPDGRYMASGD 566
                                                      ++SL+++PD R   SG 
Sbjct: 144 GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203

Query: 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
            D +  +WD+  G C     GH S +  + +   G+  A+GS D T +L+
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.1 bits (149), Expect = 6e-11
 Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 47/189 (24%)

Query: 483 HDRTARIWSMDRIQ--PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV 540
              T  I  + RIQ    R + GHL+ +  + W  +   + + S D  + +WD  +   V
Sbjct: 31  SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV 90

Query: 541 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS---------------------- 578
                  S +++ A +P G Y+A G  D    +++L +                      
Sbjct: 91  HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150

Query: 579 -----------------------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615
                                  G+  T   GHT  V +L+ + +  L  SG+ D + KL
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210

Query: 616 WDVTTSTKV 624
           WDV      
Sbjct: 211 WDVREGMCR 219

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  141 bits (356), Expect = 2e-37
 Identities = 65/331 (19%), Positives = 116/331 (35%), Gaps = 78/331 (23%)

Query: 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY 414
            C   S DG  +A G  + + +V+ ++     A  S     N           +    + 
Sbjct: 66  CCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAAN----------KDPENLNT 114

Query: 415 TLYQGHSGPVYSASFSPLGDFILSSS---------------------------------- 440
           +        + S  FSP G F+ + +                                  
Sbjct: 115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 174

Query: 441 --------ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492
                    D T+R+W  +     +     +           G Y A+ S DR  R+W  
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234

Query: 493 DR-------IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE------- 538
           +                GH   V  V +  +   + +GS D++V+LW++ +         
Sbjct: 235 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294

Query: 539 -----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW 593
                C   +IGH+  +LS+A + +  Y+ SG +D  ++ WD  SG  +  L GH + V 
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354

Query: 594 TLAY------SCEGSLLASGSADCTVKLWDV 618
           ++A         E ++ A+GS DC  ++W  
Sbjct: 355 SVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (276), Expect = 7e-27
 Identities = 55/231 (23%), Positives = 105/231 (45%), Gaps = 26/231 (11%)

Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTK------------------LNANLVCYK 460
            H+  V    FS  G+++ +   + T +++                      N N     
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
             +  +  V F+P G + A+ + DR  RIW ++  + + I+ GH  D+  + +  + + +
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
            +GS D+TVR+WD+ +G+C         +        DG+Y+A+G  D  + +WD  +G 
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 581 CVTPLM-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
            V  L        GH   V+++ ++ +G  + SGS D +VKLW++  +   
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.8 bits (213), Expect = 9e-19
 Identities = 51/232 (21%), Positives = 91/232 (39%), Gaps = 26/232 (11%)

Query: 414 YTLYQGHSGPVYSASFSPLGD---FILSSSADTTIRLWSTK----LNANLVCYKGHNYPV 466
           Y     HS P+               L    +    L++      ++  L     H   V
Sbjct: 6   YNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVV 65

Query: 467 WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG------------------HLSDV 508
             V+F+  G Y A+   ++T +++ +     +  ++                       +
Sbjct: 66  CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 124

Query: 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568
             V +  +  ++ATG+ D+ +R+WD+ + + V I  GH   I SL   P G  + SG  D
Sbjct: 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 184

Query: 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            T+ +WDL +G+C   L              +G  +A+GS D  V++WD  T
Sbjct: 185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 236

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.8 bits (200), Expect = 4e-17
 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405
           +     + +     ++DG  V  G  D S+K+W++     ++ S                
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT----- 303

Query: 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP 465
                      Y GH   V S + +   ++ILS S D  +  W  K    L+  +GH   
Sbjct: 304 -----------YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 352

Query: 466 VWDV------QFNPQGHYFASSSHDRTARIWSMDRI 495
           V  V         P+ + FA+ S D  ARIW   +I
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 564 SGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619
               +   ++++ A  R     +   + HTS V  + +S +G  LA+G  + T +++ V+
Sbjct: 33  KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVS 91

Query: 620 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQV 654
             + V +  + S  N  +  + L T S+P   L +
Sbjct: 92  DGSLVARLSDDSAAN--KDPENLNTSSSPSSDLYI 124

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 2e-30
 Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 45/249 (18%)

Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW 467
            G  +S  + +GH   V +      G+ I+S S D T+++WS      L    GH   VW
Sbjct: 3   RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61

Query: 468 DVQFNP--------------------------------------QGHYFASSSHDRTARI 489
             Q                                               S S D T R+
Sbjct: 62  SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 121

Query: 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM 549
           W ++  Q L ++ GH++ V CV++      + +G+ D  V++WD  +  C+    GH + 
Sbjct: 122 WDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179

Query: 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA 609
           + S  +  DG ++ SG  D +I +WD+ +G C+  L GH S    +      ++L SG+A
Sbjct: 180 VYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA 235

Query: 610 DCTVKLWDV 618
           D TVK+WD+
Sbjct: 236 DSTVKIWDI 244

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 5e-28
 Identities = 44/194 (22%), Positives = 92/194 (47%), Gaps = 14/194 (7%)

Query: 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493
             ++S + D  +++W  +    L   +GH   V+ +QF+  G +  S S D + R+W ++
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVE 205

Query: 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILS 552
               +  + GH S    +      N + +G++D TV++WD+ +G+C++     ++     
Sbjct: 206 TGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 263

Query: 553 LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-----GHTSCVWTLAYSCEGSLLASG 607
             +  +  ++ +  +DGT+ +WDL +G  +  L+     G    VW +  S    + A G
Sbjct: 264 TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323

Query: 608 SADCT----VKLWD 617
           S + T    + + D
Sbjct: 324 SRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (274), Expect = 5e-27
 Identities = 61/297 (20%), Positives = 112/297 (37%), Gaps = 19/297 (6%)

Query: 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE----------NDTTP 400
           H+      +   G+ +  G  D++LKVW            G  G             +  
Sbjct: 15  HDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74

Query: 401 REDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK 460
            +  +     +    ++  +               ++S S D T+R+W  +    L    
Sbjct: 75  TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM 134

Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
           GH   V        G    S ++D   ++W  +    L  + GH           +  ++
Sbjct: 135 GHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQFDGIHV 190

Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
            +GS D ++R+WDV +G C+    GH+S+   +        + SG+ D T+ +WD+ +G+
Sbjct: 191 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNILVSGNADSTVKIWDIKTGQ 248

Query: 581 CV-TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV--LKTEEKSGTN 634
           C+ T    +             + + + S D TVKLWD+ T   +  L T E  G+ 
Sbjct: 249 CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 305

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 3e-26
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 14/170 (8%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
            QGH+  VYS  F   G  ++S S DT+IR+W  +    +    GH      ++     +
Sbjct: 173 LQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--N 228

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVS 535
              S + D T +IW +   Q L+ + G       V     N N++ T S D TV+LWD+ 
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

Query: 536 SGECVRIFI-----GHRSMILSLAMSPDGRYMASGDEDGT----IMMWDL 576
           +GE +R  +     G   ++  +  S      A G  +GT    +++ D 
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (196), Expect = 7e-17
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 5/128 (3%)

Query: 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM 549
           W    ++  +++ GH   V         N I +GS D T+++W   +G+C+R  +GH   
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA 609
           + S  M  +     S D    +   +            +               + SGS 
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAE----TGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115

Query: 610 DCTVKLWD 617
           D T+++WD
Sbjct: 116 DATLRVWD 123

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 7e-30
 Identities = 64/294 (21%), Positives = 113/294 (38%), Gaps = 28/294 (9%)

Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE-------- 395
            +    T  G+ C  +  D   +  G  D+++K+WD   L  + + +G  G         
Sbjct: 8   IHCRSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 396 --NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN 453
               T   +  +          L                   +++ S D +I +W     
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 454 ANLVCYKGHNY-PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
            ++   +            +    Y  S+S DRT ++W+    + +R + GH   + C  
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC-- 183

Query: 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
                  + +GSSD T+RLWD+  G C+R+  GH    L   +  D + + SG  DG I 
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFDNKRIVSGAYDGKIK 241

Query: 573 MWDLASG---------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
           +WDL +           C+  L+ H+  V+ L +      + S S D T+ +WD
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 3e-24
 Identities = 58/274 (21%), Positives = 93/274 (33%), Gaps = 51/274 (18%)

Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---- 474
             S  VY   +      I+S   D TI++W            GH   V  +Q++ +    
Sbjct: 13  ETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70

Query: 475 ----------------------------------GHYFASSSHDRTARIWSMDRIQPL-R 499
                                                  + S DR+  +W M     +  
Sbjct: 71  GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130

Query: 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559
                           +  YI + S D+T+++W+ S+ E VR   GH+  I    +    
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC--LQYRD 188

Query: 560 RYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619
           R + SG  D TI +WD+  G C+  L GH   V       +   + SG+ D  +K+WD+ 
Sbjct: 189 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLV 246

Query: 620 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ 653
            +                 L+TL   S  V+ LQ
Sbjct: 247 AALDPRAPAGT------LCLRTLVEHSGRVFRLQ 274

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (210), Expect = 6e-19
 Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 47/210 (22%)

Query: 456 LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI 515
           + C    +  V+ +Q++       S   D T +IW  + ++  RI+ GH   V C+++  
Sbjct: 8   IHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 516 N--------------------------------------CNYIATGSSDKTVRLWDVSSG 537
                                                     + T S D+++ +WD++S 
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 538 ECV---RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT 594
             +   R+ +GHR+ +  +         ASG  D TI +W+ ++   V  L GH   +  
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGIAC 183

Query: 595 LAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
           L Y     L+ SGS+D T++LWD+     +
Sbjct: 184 LQYR--DRLVVSGSSDNTIRLWDIECGACL 211

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 1e-12
 Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 6/130 (4%)

Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA 554
           +Q +   +     V C+++  +   I +G  D T+++WD ++ EC RI  GH   +L   
Sbjct: 5   LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC-- 60

Query: 555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK 614
           +  D R + +G  D T+ +WD+ +G  +  L+ H   V  L ++       + S D ++ 
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMM--VTCSKDRSIA 118

Query: 615 LWDVTTSTKV 624
           +WD+ + T +
Sbjct: 119 VWDMASPTDI 128

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  113 bits (281), Expect = 1e-27
 Identities = 52/324 (16%), Positives = 105/324 (32%), Gaps = 53/324 (16%)

Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
           ++++F+     ++C + ++D + +A   ++  + +++ +                     
Sbjct: 1   AYHSFL--VEPISCHAWNKDRTQIAICPNNHEVHIYEKS--------------------- 37

Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
                  +       + H+G V    ++P  + I++   D    +W+ K           
Sbjct: 38  -----GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 92

Query: 463 NY--PVWDVQFNPQGHYFASSSHDRTARIWSM----DRIQPLRIMAGHLSDVDCVRWHIN 516
                   V++ P    FA  S  R   I       D      I     S V  + WH N
Sbjct: 93  RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 152

Query: 517 CNYIATGSSDKTVRLWDVSSGE------------------CVRIFIGHRSMILSLAMSPD 558
              +A GS D   R++     E                   +         +  +  S +
Sbjct: 153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 212

Query: 559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           G  +A    D T+ + D      V  L   T  +  + +  E SL+A+G  DC   L+  
Sbjct: 213 GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTY 271

Query: 619 TTSTKVLKTEEKSGTNRLRSLKTL 642
            ++   L    +    +  S + L
Sbjct: 272 DSAAGKLSFGGRLDVPKQSSQRGL 295

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.2 bits (214), Expect = 5e-19
 Identities = 45/319 (14%), Positives = 84/319 (26%), Gaps = 45/319 (14%)

Query: 351 HNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE------- 402
           HNG +     + D + +    +D +  VW +     +     L+                
Sbjct: 50  HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 109

Query: 403 -------------DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWS 449
                             N       + +     V S  + P    + + S D   R++S
Sbjct: 110 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 169

Query: 450 TKLNANLVCY------------------KGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
             +                               V  V F+  G   A  SHD T  +  
Sbjct: 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 229

Query: 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL 551
            D+   +  +A     +  V +    + +A G       L+   S      F G   +  
Sbjct: 230 ADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFP-VLFTYDSAAGKLSFGGRLDVPK 288

Query: 552 SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG----SLLASG 607
             +           + D        ++         H + V  ++    G    S   + 
Sbjct: 289 QSSQRGLTARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT 347

Query: 608 SADCTVKLWDVTTSTKVLK 626
             D  + +WDV +    LK
Sbjct: 348 GMDGGMSIWDVRSLESALK 366

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 7/56 (12%), Positives = 22/56 (39%)

Query: 588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP 643
               +   A++ + + +A    +  V +++ + +  V   E K    ++  +   P
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 9e-27
 Identities = 48/309 (15%), Positives = 85/309 (27%), Gaps = 67/309 (21%)

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK 411
             +   +IS     V  G     +KVWD++                          N   
Sbjct: 52  EVVCAVTISNPTRHVYTG-GKGCVKVWDISH-----------------------PGNKSP 87

Query: 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYPVWDV 469
            S          + S    P G  ++        +I   +                 + +
Sbjct: 88  VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147

Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
             +P      S   D    +W +     +R   GH     C+    +   + TG  D TV
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207

Query: 530 RLWDVSSGECVR----------------------------------------IFIGHRSM 549
           R WD+  G  ++                                            H S 
Sbjct: 208 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC 267

Query: 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA 609
           +LSL  +  G++  S  +D  +  W    G  +      +S V +   S +   + +GS 
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSG 326

Query: 610 DCTVKLWDV 618
           D    +++V
Sbjct: 327 DKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 6e-12
 Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 10/205 (4%)

Query: 420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
            S P YS   +  G    +    D  I     + +A  +    H   V  V  +    + 
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR-HARQINTLNHGEVVCAVTISNPTRHV 66

Query: 479 ASSSHDRTARIWSMD-----RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
            +       ++W +                  + +   +   +   +  G    T+ +WD
Sbjct: 67  YTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125

Query: 534 VSSGECVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC 591
           +++           S     +LA+SPD +   S   DG I +WDL +   V    GHT  
Sbjct: 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185

Query: 592 VWTLAYSCEGSLLASGSADCTVKLW 616
              +  S +G+ L +G  D TV+ W
Sbjct: 186 ASCIDISNDGTKLWTGGLDNTVRSW 210

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 94.5 bits (233), Expect = 1e-21
 Identities = 23/312 (7%), Positives = 61/312 (19%), Gaps = 44/312 (14%)

Query: 348 INTHNGLNCASISQDGSLVA--GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405
           +     +       D  +    G      L ++D      +     L          +  
Sbjct: 39  VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGK 98

Query: 406 GPNGRKRSYTLYQ-----------------------GHSGPVYSASFSPLGDFILSSSAD 442
                   + +                               + A   PL          
Sbjct: 99  FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158

Query: 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW-------SMDRI 495
             I ++  +           N   +   F+         S+              S + +
Sbjct: 159 QAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217

Query: 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLW-------DVSSGECVRIFIGHRS 548
               ++       +  +          G  D             D      +        
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277

Query: 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS 608
           +           Y     E G ++ +D+ + +    +    + +  L  S +   +    
Sbjct: 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTVMVRK 333

Query: 609 ADCTVKLWDVTT 620
            D  +  + +  
Sbjct: 334 DDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 92.6 bits (228), Expect = 6e-21
 Identities = 19/192 (9%), Positives = 48/192 (25%), Gaps = 18/192 (9%)

Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-------K 460
           +   R        +   Y+ +F      +   S  +        +               
Sbjct: 165 DMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIP 224

Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRWHIN 516
                    +  P+     +  +D          I       R++    S +      ++
Sbjct: 225 LIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284

Query: 517 CN---YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
                Y         +  +DV + +        ++ +  L +S D + +    +DG I  
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340

Query: 574 WDLASGRCVTPL 585
           + L        +
Sbjct: 341 FPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 71.4 bits (173), Expect = 6e-14
 Identities = 27/208 (12%), Positives = 60/208 (28%), Gaps = 14/208 (6%)

Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483
            ++  FSPL   +++  +     +    ++   V        +  V+             
Sbjct: 5   KFAEDFSPLDGDLIAFVSRGQAFIQD--VSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGT 62

Query: 484 DRTARIWSMD-RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI 542
                +   D R         +L +V  +    N  +    +    +   D+ +G+   I
Sbjct: 63  REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122

Query: 543 FIGHRSMILSLAMSPDGRYMASGD----------EDGTIMMWDLASGRCVTPLMGHTSCV 592
                +MI    +S + R++A G               I ++D+   +         S  
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHD 181

Query: 593 WTLAYSCEGSLLASGSADCTVKLWDVTT 620
           +  A+  +   L   S        D   
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSPDRVV 209

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.8 bits (231), Expect = 2e-21
 Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 23/221 (10%)

Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           +GH   V +       +++++ + D  IR++ +     L+   GH+  VW +++   G  
Sbjct: 9   RGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67

Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
            + S+                     + +     +  + N  YI TGS D T+ +W +  
Sbjct: 68  VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127

Query: 537 GECVRIFIGHRSMILSLAMSPD---------------------GRYMASGDEDGTIMMWD 575
              V          L      +                     G  + SG  D T+++WD
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWD 187

Query: 576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
           +A  +C+  L GHT  +++  Y  E     S S D T+++W
Sbjct: 188 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 228

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.3 bits (209), Expect = 2e-18
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 3/137 (2%)

Query: 496 QPLRI-MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA 554
            P R  + GH++ V         NY+ TG+ DK +R++D  + + +    GH   + +L 
Sbjct: 2   VPQRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60

Query: 555 MSPDGR-YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV 613
            +  G     S D    +          V      T     +        + +GS D T+
Sbjct: 61  YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120

Query: 614 KLWDVTTSTKVLKTEEK 630
            +W +   + V    E+
Sbjct: 121 HVWKLPKESSVPDHGEE 137

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.4 bits (204), Expect = 7e-18
 Identities = 45/256 (17%), Positives = 90/256 (35%), Gaps = 13/256 (5%)

Query: 367 AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             G  D++L VW + K              +         P        + +GH   V +
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGE-----EHDYPLVFHTPEENPYFVGVLRGHMASVRT 166

Query: 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
              S  G+ ++S S D T+ +W       L    GH   ++   ++ +     S+S D T
Sbjct: 167 --VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224

Query: 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
            RIW ++  + +  + GH + V  +R        A           +       +    H
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND---YSRKFSYHH 281

Query: 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV-TPLMGHTSCVWTLAYSCEGSLLA 605
            ++            + SG  +    +++L SG+ V   ++     +W++ +  +  L+A
Sbjct: 282 TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVA 339

Query: 606 SGSADCTVKLWDVTTS 621
           +   D    L  +  S
Sbjct: 340 AVEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.2 bits (162), Expect = 1e-12
 Identities = 51/352 (14%), Positives = 102/352 (28%), Gaps = 93/352 (26%)

Query: 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGR 410
           H       +  + + V  G  D  ++V+D                              +
Sbjct: 11  HMTSVITCLQFEDNYVITGADDKMIRVYDSIN---------------------------K 43

Query: 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWD 468
           K    L  GH G V++  ++  G  ++S S      +         ++           D
Sbjct: 44  KFLLQL-SGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 101

Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLR---------------------IMAGHLSD 507
           +       Y  + S D T  +W + +   +                      +       
Sbjct: 102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161

Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567
                   + N + +GS D T+ +WDV+  +C+ I  GH   I S     + +   S   
Sbjct: 162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM 221

Query: 568 DGTIMMWDLASG---------------------------------------RCVTPLMGH 588
           D TI +WDL +G                                               H
Sbjct: 222 DTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH 281

Query: 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLK 640
           T+      +    ++L SGS +    ++++ +  K++        +++ S+ 
Sbjct: 282 TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG-KLVHANILKDADQIWSVN 331

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632
           T L GH + V T     E + + +G+ D  ++++D      +L+     G
Sbjct: 6   TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDG 54

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 10/105 (9%), Positives = 28/105 (26%), Gaps = 29/105 (27%)

Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
                +  N     +     +++  G S++   +++        + SG            
Sbjct: 275 RKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYN--------LRSG------------ 313

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLW 448
                  K  +      +  ++S +F      + +   D    L 
Sbjct: 314 -------KLVHANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 91.7 bits (226), Expect = 1e-20
 Identities = 40/306 (13%), Positives = 84/306 (27%), Gaps = 44/306 (14%)

Query: 348 INTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMA--KLGQQAVSSGLQGENDTTPREDI 404
           +    G   A ++ D             +   D+   K    A  S + GE   +     
Sbjct: 36  MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA 95

Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY 464
           I P+G++            VY+                  + ++ST         +    
Sbjct: 96  ISPDGKE------------VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM 143

Query: 465 P--VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG------------------- 503
           P  V+ ++    G  + +        + +      L +                      
Sbjct: 144 PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSP 203

Query: 504 ---HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV-RIFIGHRSMILSLAMSPDG 559
                      R+  +    AT          D+ +G+   + F     +  +   SP  
Sbjct: 204 RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD 263

Query: 560 RYMASGDEDGTIMMWDLASGRCV-TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
                G     +  +DL   + +    + HT   + +A+  +G  L  G     + +++ 
Sbjct: 264 PNQIYGV-LNRLAKYDLKQRKLIKAANLDHT--YYCVAFDKKGDKLYLGGTFNDLAVFNP 320

Query: 619 TTSTKV 624
            T  KV
Sbjct: 321 DTLEKV 326

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 69.4 bits (168), Expect = 2e-13
 Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 8/131 (6%)

Query: 519 YIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWDL 576
           Y+   +    + + DV+S    +   +  +    +  M+PD R      +  G I   DL
Sbjct: 10  YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 69

Query: 577 ASGRCVTPLM------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 630
            + +                 +++ A S +G  + +                  L+    
Sbjct: 70  DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 129

Query: 631 SGTNRLRSLKT 641
           +     + ++T
Sbjct: 130 ADGLEAKPVRT 140

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 64.0 bits (154), Expect = 1e-11
 Identities = 14/244 (5%), Positives = 46/244 (18%), Gaps = 44/244 (18%)

Query: 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHY-FASSSHDR 485
           +     ++++ ++    + +     +           +        P     +  ++H  
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 486 TARIWSMDR------IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
                 +D            +       +       +   +    +              
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122

Query: 540 VRIFIGHRSM----ILSLAMSPDGRYMASGDEDGTIMM-------WDLASGRCVTPLMGH 588
                          +     P   Y+    +DG++ +        D+ +G+    L   
Sbjct: 123 RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLR 182

Query: 589 --------TSCVWTLAYSCEGS-----------------LLASGSADCTVKLWDVTTSTK 623
                      V                             A+          D+ T   
Sbjct: 183 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT 242

Query: 624 VLKT 627
             + 
Sbjct: 243 HTQE 246

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 16/171 (9%), Positives = 45/171 (26%), Gaps = 22/171 (12%)

Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYI-ATGSSD 526
                   Y   +++     +  +      +  +              +        +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 527 KTVRLWDVSSGECVRIF------IGHRSMILSLAMSPDGRYMASGDED------------ 568
             +   D+ + +                 + S A+SPDG+ + +                
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 569 GTIMMWDLASGRCVTPLMGHTSC--VWTLAYSCEGSLLASGSADCTVKLWD 617
             + ++  A G    P+        V+ +  + +GSL  +G     + +  
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT 172

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.9 bits (133), Expect = 7e-09
 Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 2/68 (2%)

Query: 553 LAMSPDGRYMASGDEDGTIMMWDLASGRCV-TPLMGHTSCVWTLAYSCEGS-LLASGSAD 610
            A+     YM   +    + + D+AS     + +M       T   + +        +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 611 CTVKLWDV 618
             +   D+
Sbjct: 62  GDIYGIDL 69

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.5 bits (225), Expect = 2e-20
 Identities = 40/329 (12%), Positives = 94/329 (28%), Gaps = 74/329 (22%)

Query: 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY 414
                + +  LVA       L  + + +  +       + +   +               
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDS--------------- 115

Query: 415 TLYQGHSGPVYSASFSPLGD-----FILSSSADTTIRLWST------------------K 451
                     ++  +    D      ++++    T  +W                    +
Sbjct: 116 ---DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 172

Query: 452 LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS------MDRIQPLRIMAGHL 505
           L   +      +     V  + +G   A+  ++ T +I        +   +    M  + 
Sbjct: 173 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 231

Query: 506 SDVDCVRWHINCNYIATGSSDKTV---RLWD-------------VSSGECVRIFIGHRSM 549
           + +  V++    + +A      +     L++               S +       H S 
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291

Query: 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV----WTLAYSCEGSLLA 605
           ++SL+ +  G  + S   DG +  WD+ +   +T L  H   +      LA    G  LA
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351

Query: 606 SGSADCTVKLWDVTTSTKVLKTEEKSGTN 634
                    ++DV    K  ++   +  N
Sbjct: 352 EPG------VFDVKFLKKGWRSGMGADLN 374

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.1 bits (224), Expect = 3e-20
 Identities = 33/255 (12%), Positives = 74/255 (29%), Gaps = 55/255 (21%)

Query: 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL------NANLVCYKGHNYPVWD 468
              + H   ++S S      F +S S D  +++W  KL            +  H   +  
Sbjct: 8   NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 469 VQF-------NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH------- 514
           V           +    A++S       + + R    + +     D+             
Sbjct: 66  VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 515 --------INCNYIATGSSDKTVRLWDVSSGE------------------CVRIFIGHRS 548
                   +  + +       T  +W                         V   +    
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185

Query: 549 MILSLAMSPDGRYMASGDEDGTIM------MWDLASGRCVTPLMGHTSCVWTLAYSCEGS 602
              S+ +S  G  +A+G  +GT+       +  L +      ++ +++ + ++ +S +GS
Sbjct: 186 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 603 LLASGSADCTVKLWD 617
           LLA      +     
Sbjct: 245 LLAIAHDSNSFGCIT 259

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.4 bits (212), Expect = 1e-18
 Identities = 44/322 (13%), Positives = 86/322 (26%), Gaps = 71/322 (22%)

Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
           S+S   S       D  LKVWD               +N+    +       +   + + 
Sbjct: 19  SVSACNSFTVSCSGDGYLKVWDNK-----------LLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP----------VW 467
              +        +     + ++S    +  +                            W
Sbjct: 68  VLQAIE----RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 468 DVQFNPQG-----HYFASSSHDRTARIWSMDRIQP------------------LRIMAGH 504
            +++         H   ++    T  IW                         +      
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183

Query: 505 LSDVDCVRWHINCNYIATGSSDKTVRL------WDVSSGECVRIFIGHRSMILSLAMSPD 558
                 V        IATG ++ TV++        + + E     I + + I S+  SP 
Sbjct: 184 SQFATSVDIS-ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242

Query: 559 GRYMASGDEDGTIMMW----------------DLASGRCVTPLMGHTSCVWTLAYSCEGS 602
           G  +A   +  +                       S +       H+S V +L+++  G 
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302

Query: 603 LLASGSADCTVKLWDVTTSTKV 624
            L S   D  ++ WDV T  ++
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERI 324

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.6 bits (202), Expect = 2e-17
 Identities = 35/279 (12%), Positives = 74/279 (26%), Gaps = 52/279 (18%)

Query: 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423
             +       +  +W       +            +   +       + +       S  
Sbjct: 137 HRLVATDVKGTTYIWKFHPFADE----------SNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY------KGHNYPVWDVQFNPQGHY 477
             S   S  G  I +   + T+++        L  +        ++  +  V+F+PQG  
Sbjct: 187 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245

Query: 478 FASSSHDRTARIWSM----------------DRIQPLRIMAGHLSDVDCVRWHINCNYIA 521
            A +    +    ++                   Q       H S V  + ++ +   + 
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305

Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRSMI----LSLAMSPDGRYMASGDEDGTIMMWDLA 577
           +   D  +R WDV + E +     H   I      LA+   G  +A     G   +  L 
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP---GVFDVKFLK 362

Query: 578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
            G                        L     D +++ +
Sbjct: 363 KGWRSGMGADL------------NESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 3e-11
 Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 15/115 (13%)

Query: 539 CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM------GHTSCV 592
                  H + I S++      +  S   DG + +WD        P         H S +
Sbjct: 6   TANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 593 WTLA-------YSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLK 640
             +         + E  L+A+ S    +  + +T   +  K   +        +K
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK 118

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 5e-08
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 19/133 (14%)

Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
           P    ++      HS  V S SF+  G+ + S+  D  +R W  K    +     H   +
Sbjct: 275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 334

Query: 467 ----WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
                 +  +  G   A         ++ +  ++                       +  
Sbjct: 335 EIEEDILAVDEHGDSLAEPG------VFDVKFLK---------KGWRSGMGADLNESLCC 379

Query: 523 GSSDKTVRLWDVS 535
              D+++R +  +
Sbjct: 380 VCLDRSIRWFREA 392

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.7 bits (223), Expect = 3e-20
 Identities = 26/282 (9%), Positives = 63/282 (22%), Gaps = 72/282 (25%)

Query: 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLW---STKLNANLVCYKGHNYPVWDVQF 471
            + Q     +      P    +L +S D ++ ++       N +L+    + +P+    F
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 472 NP-QGHYFASSSHDRTARI----------------------------------------- 489
                      +                                                
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 490 --WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS------SDKTVRLWDVSSGECVR 541
                       I   +L+  +    +         S      ++  V+ + +   E   
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184

Query: 542 IFIGHRSM----ILSLAMSPDGRYMASGDEDGTIMMWDLASG---------------RCV 582
             I    +         +  +    A    DG + +                     R  
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244

Query: 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
                    V ++ +S     L +  +D  +  W++ T  K+
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.5 bits (220), Expect = 5e-20
 Identities = 34/322 (10%), Positives = 74/322 (22%), Gaps = 45/322 (13%)

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK 411
           + ++   I    SL+     D SL V+      +                 + I     +
Sbjct: 12  DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ 71

Query: 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ- 470
                 QG    V             + +     R+     +  +         V D + 
Sbjct: 72  IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN 131

Query: 471 ------------------------FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS 506
                                    +          ++   + + +   +          
Sbjct: 132 YGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG 191

Query: 507 DVDCVRWHINC----NYIATGSSDKTVRLWDVSSGECV---------------RIFIGHR 547
               +R            A  S D  V +                               
Sbjct: 192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA 251

Query: 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG 607
             + S+  SP  +++ +   DG I  W+L + + +       +    +  +C  ++L   
Sbjct: 252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLA 310

Query: 608 SADCTVKLWDVTTSTKVLKTEE 629
           ++D T K       T  L    
Sbjct: 311 TSDDTFKTNAAIDQTIELNASS 332

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.7 bits (210), Expect = 1e-18
 Identities = 15/182 (8%), Positives = 48/182 (26%), Gaps = 24/182 (13%)

Query: 433 GDFILSSSADTTIRLWS----TKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488
              ++    ++ ++ +        N  +                 +   +A SS D    
Sbjct: 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219

Query: 489 IWSMD---------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
           +   D                 +           V+ + +     ++ T  SD  +  W+
Sbjct: 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279

Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW 593
           + + + ++ F         + ++     +     D T              +  + S ++
Sbjct: 280 LQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDDTFKTN----AAIDQTIELNASSIY 334

Query: 594 TL 595
            +
Sbjct: 335 II 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 4e-12
 Identities = 9/87 (10%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL---MGHTSCVWT 594
           + V+I    +  I  + + P    +     DG++ ++          L   + +   +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 595 LAYSC-EGSLLASGSADCTVKLWDVTT 620
             +       +  G+    +   D+  
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIG 88

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 4e-12
 Identities = 11/103 (10%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMIL 551
           +Q ++I       +  ++   + + +   S D ++ ++          +   + ++  +L
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 552 SLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW 593
                 +    +  G   G I+  DL        L  + + + 
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLG 103

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (156), Expect = 8e-12
 Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 20/166 (12%)

Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWS------------- 449
            +        +             A      +    SS D  + +               
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235

Query: 450 --TKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507
              + +   +      YPV  ++F+P+  +  ++  D     W++   + ++  A    D
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED 295

Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL 553
              V+   + N +   +SD T +          +    + S I  +
Sbjct: 296 S-VVKIACSDNILCLATSDDTFKTN----AAIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 9e-08
 Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 1/65 (1%)

Query: 587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG-TNRLRSLKTLPTK 645
                +  +      SLL   S D ++ ++      K +   +     + L     +   
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 646 STPVY 650
              +Y
Sbjct: 69  DLQIY 73

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 88.8 bits (218), Expect = 6e-20
 Identities = 47/317 (14%), Positives = 84/317 (26%), Gaps = 84/317 (26%)

Query: 356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT 415
               +  G  +    + +S+    +  L    +                           
Sbjct: 22  VLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEI--------------------------- 53

Query: 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRL--WSTKLNANLVCYKGHNYPV------- 466
            Y  HS     A  SP G +  S      +R+   +   +         + PV       
Sbjct: 54  -YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112

Query: 467 --------------------------------------WDVQFNPQGHYFASSSHDRTAR 488
                                                        +     S S D T  
Sbjct: 113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172

Query: 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI------ 542
           I+     +       H   V  VR++ + +  A+   D T+ L++   G    +      
Sbjct: 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 232

Query: 543 -FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC-VWTLAYSCE 600
             + H   +  L  SPDG  +AS   D TI +W++A+ +    +   T      L     
Sbjct: 233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 292

Query: 601 GSLLASGSADCTVKLWD 617
              L S SA+  +   +
Sbjct: 293 KQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 75.3 bits (183), Expect = 2e-15
 Identities = 50/260 (19%), Positives = 80/260 (30%), Gaps = 56/260 (21%)

Query: 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS 481
           G       +P GD I   +  T++         +   Y  H++     + +P G+Y AS 
Sbjct: 18  GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 482 SHDRTARIW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
                 RIW  +         +      V  + W      IA     +            
Sbjct: 77  DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 136

Query: 540 VRIFIGHRSMI---------------------------------------------LSLA 554
                                                                    S+ 
Sbjct: 137 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 196

Query: 555 MSPDGRYMASGDEDGTIMMWDLASGRCVT-------PLMGHTSCVWTLAYSCEGSLLASG 607
            +PDG   AS   DGTI++++   G             + H+  V+ L +S +G+ +AS 
Sbjct: 197 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256

Query: 608 SADCTVKLWDVTTSTKVLKT 627
           SAD T+K+W+V T  KV KT
Sbjct: 257 SADKTIKIWNVATL-KVEKT 275

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 75.3 bits (183), Expect = 2e-15
 Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 1/120 (0%)

Query: 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC 517
                 Y      F   G       ++      +            H   V  + W  + 
Sbjct: 191 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 250

Query: 518 NYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
             IA+ S+DKT+++W+V++ +  +   +G R     L +    + + S   +G I   + 
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.0 bits (151), Expect = 2e-11
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606
           R   + L  +P G  +   +   ++    + S         H+        S  G   AS
Sbjct: 17  RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75

Query: 607 GSADCTVKLW 616
           G     V++W
Sbjct: 76  GDVHGNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYF 478
           HSG V+  ++SP G  I S+SAD TI++W+                    +         
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296

Query: 479 ASSSHDRTARIWSMD 493
            S S +      + +
Sbjct: 297 VSISANGFINFVNPE 311

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.5 bits (212), Expect = 5e-19
 Identities = 38/297 (12%), Positives = 73/297 (24%), Gaps = 69/297 (23%)

Query: 387 AVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTT 444
           A   G         R    G +            S  V +  FSP+    ++ S      
Sbjct: 33  AYPCG----KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK 88

Query: 445 IRLWSTKLNANLV--------CYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDR 494
           + +W    +             ++    P+ D+ ++ +G          D      S D 
Sbjct: 89  VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS 148

Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVR----LWDVSSGECVRIFIGHRSMI 550
              L  ++GH   ++      +    +    D                  R      S +
Sbjct: 149 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV 208

Query: 551 LSLAMSP----------------------------------------------DGRYMAS 564
             +  SP                                              D +  A+
Sbjct: 209 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT 268

Query: 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC---EGSLLASGSADCTVKLWDV 618
              D TI +WD+ + +CV         +              + S S D T+  +++
Sbjct: 269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 84.7 bits (207), Expect = 1e-18
 Identities = 35/289 (12%), Positives = 78/289 (26%), Gaps = 21/289 (7%)

Query: 351 HNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE-------------- 395
           HN  +   S S DG  +    ++  +  WD++      V   +                 
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 396 ---NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL 452
               D   +    G +G   S  +    S      + S  GD  +++     I ++S   
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK 129

Query: 453 NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
              +      +                 S         +        +    ++ V    
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189

Query: 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
                             + +         +  H + +  ++ SPD   +A+G  D +++
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249

Query: 573 MWDLASG--RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619
           +W++       +     H             + + S   D  +K W+V 
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 75.4 bits (183), Expect = 2e-15
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV-TPLMGHTSCVWTL 595
           G   ++  GH   I +L+ S DG+ + S D +G I  WD+++G         H + +  +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 596 AYSCEGSLLASGSADCTVKLWDVTTS 621
             + +G L      D  +K+     S
Sbjct: 62  KTTSKGDLFTVSW-DDHLKVVPAGGS 86

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 69.6 bits (168), Expect = 1e-13
 Identities = 16/103 (15%), Positives = 39/103 (37%), Gaps = 1/103 (0%)

Query: 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMS 556
            ++  GH   +  +    +   + +  ++  +  WD+S+G   R+F   H +MI  +  +
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
             G       +D   ++    SG   +  + +      L  + 
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 107

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.5 bits (165), Expect = 3e-13
 Identities = 28/263 (10%), Positives = 60/263 (22%), Gaps = 44/263 (16%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG 475
             GH+  + + S S  G  + S+ A+  I  W      +  V    H   +  ++   +G
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 476 HYFASSSHDRTARIW------------------SMDRIQPLRIMAGHLSDVDCVRWHINC 517
             F  S  D    +                       +         ++         + 
Sbjct: 68  DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127

Query: 518 NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577
             +             +S+ +      G  S +    +S               +     
Sbjct: 128 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 187

Query: 578 SGRCVTPLMGHTSCVWTLAYSCEG-------------------------SLLASGSADCT 612
           S      +    S                                      LA+GS D +
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247

Query: 613 VKLWDVTTSTKVLKTEEKSGTNR 635
           V +W++   +      + +    
Sbjct: 248 VIVWNMNKPSDHPIIIKGAHAMS 270

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.8 bits (140), Expect = 4e-10
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638
           G       GH   +  L+ S +G  L S  A+  +  WD++T     +         +  
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFPDVHATMITG 60

Query: 639 LK 640
           +K
Sbjct: 61  IK 62

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 84.9 bits (208), Expect = 2e-18
 Identities = 28/277 (10%), Positives = 65/277 (23%), Gaps = 14/277 (5%)

Query: 359 ISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
           ++  G    A      SL   D+              E               K      
Sbjct: 41  VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100

Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---------KGHNYPVWD 468
                 +      P    +  +   +  + +       ++ +          G +  V D
Sbjct: 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMD 160

Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
            +           S +              +  +  +          + +     +    
Sbjct: 161 PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220

Query: 529 VRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587
           +   D+ +GE              S A++P             +  +DL     +  +  
Sbjct: 221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF--GAYNVLESFDLEKNASIKRV-P 277

Query: 588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
                +++  S +GS +  G A   +  +D  T  K 
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 78.7 bits (192), Expect = 2e-16
 Identities = 19/281 (6%), Positives = 57/281 (20%), Gaps = 33/281 (11%)

Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405
             I+   G     I              +    D   L        L+  +       + 
Sbjct: 59  VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118

Query: 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP 465
             +    S          +   +++  G  +     D  +          +      ++ 
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEA--GTLVEDKPIQSWE 176

Query: 466 -----------------------VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-M 501
                                                 +++        ++  +     +
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236

Query: 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY 561
                       +          +   +  +D+     ++  +       S+ +S DG  
Sbjct: 237 RIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKNASIKR-VPLPHSYYSVNVSTDGST 293

Query: 562 MASGDEDGTIMMWDLASGRCV----TPLMGHTSCVWTLAYS 598
           +  G   G +  +D  +         P     S      ++
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFT 334

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 69.4 bits (168), Expect = 2e-13
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 8/111 (7%)

Query: 518 NYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYM-ASGDEDGTIMMW 574
           +YI   +    + + D       ++          +   ++P GR   A+ ++  +++  
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 575 DLASGRCVTPLMGHTSCVWT-----LAYSCEGSLLASGSADCTVKLWDVTT 620
           DL +G  +  +   T           A S +G  LA   +   ++L     
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 26/227 (11%), Positives = 59/227 (25%), Gaps = 21/227 (9%)

Query: 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYP--VWDVQFNPQGHY-FASSSHDRTARIW 490
           D+IL+ +    + +  T+  A        +           P G   +A+ +   +    
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 491 SMDRIQPLRIMAGHLSDVDCVRWHI-----NCNYIATGSSDKTVRLWDVSSGEC------ 539
            +   + L  +     +             +   +A   S   + L              
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 540 -----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT 594
                 R        I  LA + DG  +     D  +M  +  +G  V      +    T
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE--AGTLVEDKPIQSWEAET 179

Query: 595 LAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT 641
            A     ++     +   +     T    +   +  +    L ++  
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.7 bits (202), Expect = 5e-18
 Identities = 41/281 (14%), Positives = 83/281 (29%), Gaps = 19/281 (6%)

Query: 351 HNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409
           HN  +   +++    L++G   D  +  W  +    Q  S+ +   +++  +E       
Sbjct: 12  HNKGITALTVN---PLISGS-YDGRIMEWSSSS-MHQDHSNLIVSLDNSKAQEYSSISWD 66

Query: 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDV 469
                     H         S   D   +   +    L       +++     N P   V
Sbjct: 67  DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126

Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
             +           +        D      +     +    +    +  YIA G     +
Sbjct: 127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186

Query: 530 RLWDVSSGECVRIFIGHRSMI-----------LSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            L+D+ S E        R+              +     +   +A+G  D  I ++ +  
Sbjct: 187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246

Query: 579 -GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
             + +  L  H   V  L +    +L  S  AD  +K W+V
Sbjct: 247 PMKIIKALNAHKDGVNNLLWETPSTL-VSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.0 bits (169), Expect = 9e-14
 Identities = 40/262 (15%), Positives = 76/262 (29%), Gaps = 52/262 (19%)

Query: 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD 468
           G         GH+  + + + +PL    +S S D  I  WS+        ++ H+  +  
Sbjct: 1   GHDEVLKTISGHNKGITALTVNPL----ISGSYDGRIMEWSSS-----SMHQDHSNLIVS 51

Query: 469 VQFNPQGHYFASSSHDRTAR--------------------------------IWSMDRIQ 496
           +  +    Y + S  D                                    +       
Sbjct: 52  LDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG 111

Query: 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556
            +       S    V    N   +     +               +    R+    +++S
Sbjct: 112 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS 171

Query: 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW-----------TLAYSCEGSLLA 605
           P   Y+A+GD  G I+++DL S    T      +                    E  L+A
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231

Query: 606 SGSADCTVKLWDVTTSTKVLKT 627
           +GS D  + ++ V    K++K 
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKA 253

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 77.5 bits (189), Expect = 7e-16
 Identities = 31/337 (9%), Positives = 76/337 (22%), Gaps = 69/337 (20%)

Query: 333 HLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL 392
            +    LP+          +G   A  S   S +A G     ++V+D   L   A     
Sbjct: 43  MIDGGFLPNPVV-----ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP 97

Query: 393 QGENDTT---PREDIIGPNGRKRSYTLYQG---------------------------HSG 422
                     P    + P+G+   +  +                              + 
Sbjct: 98  DAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA 157

Query: 423 PVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS 481
           P         G     +   + T  +  T++           + +    ++ +       
Sbjct: 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWP 212

Query: 482 SHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           ++        +     + L  +           W                          
Sbjct: 213 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL------ 266

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
                                          +++ D  +G  +         + ++  S 
Sbjct: 267 ----------------VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQ 309

Query: 600 EGS--LLASGSADCTVKLWDVTTSTKVLKTEEKSGTN 634
           +    L A  + D T+ + D  +  + L++  + G  
Sbjct: 310 DEKPLLYALSTGDKTLYIHDAESG-EELRSVNQLGHG 345

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.5 bits (150), Expect = 5e-11
 Identities = 15/124 (12%), Positives = 38/124 (30%), Gaps = 21/124 (16%)

Query: 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA----------SGDEDG 569
            A  ++     + D  +G  + +  G      +  ++ DG ++A           G+   
Sbjct: 21  PAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTD 78

Query: 570 TIMMWDLASGRCVTPLMGHTSC-------VWTLAYSCEGSLL--ASGSADCTVKLWDVTT 620
            + ++D  +      +    +         W  + + +G  L     S    V + D+  
Sbjct: 79  YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG 138

Query: 621 STKV 624
               
Sbjct: 139 KAFK 142

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 16/169 (9%), Positives = 38/169 (22%), Gaps = 25/169 (14%)

Query: 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDV--- 469
             +      +   ++S     ++  +    I                +            
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 247

Query: 470 -----------------QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
                                Q   +   +  R   +      + L        ++D + 
Sbjct: 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSIN 306

Query: 513 WHINCNY--IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559
              +      A  + DKT+ + D  SGE +R           +  +  G
Sbjct: 307 VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 22/221 (9%), Positives = 46/221 (20%), Gaps = 56/221 (25%)

Query: 422 GPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
            P    + +P    +  +     +A T   +   +    +    G   P  +      G 
Sbjct: 2   EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGS 59

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           + A +S   +                                 IA G     V ++D  +
Sbjct: 60  FIAHASTVFS--------------------------------RIARGERTDYVEVFDPVT 87

Query: 537 GECVRIFIGHRSMILSLAMSPDG---------RYMASGDEDGTIMMWDLASGRCVTPLMG 587
                      +    +   P                      + + DL        L  
Sbjct: 88  LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 147

Query: 588 HTSC-------VWTLAYSCEGSLLASGSA-DCTVKLWDVTT 620
                           +  +GSL       + T ++     
Sbjct: 148 PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 188

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 75.4 bits (184), Expect = 4e-15
 Identities = 30/323 (9%), Positives = 73/323 (22%), Gaps = 59/323 (18%)

Query: 333 HLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL 392
           H   A L           H+G + A  S   +  A G     ++V+D             
Sbjct: 61  HSLGAFLSLAVA-----GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------- 106

Query: 393 QGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTK 451
                  P  DI  P+  +            V+          +L      +     S  
Sbjct: 107 ------LPIADIELPDAPR------FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVP 154

Query: 452 LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA------GHL 505
             ++    K  +                  S   +     +        +          
Sbjct: 155 GASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211

Query: 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565
                 + +     +   +S         +         G+ S   +      G  M + 
Sbjct: 212 CSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271

Query: 566 DEDG-------------------TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS--LL 604
            ++                           + G+   P+  +      +  + +G+    
Sbjct: 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNY 330

Query: 605 ASGSADCTVKLWDVTTSTKVLKT 627
           A+ +    + ++D  +  +   +
Sbjct: 331 ANSAGTEVLDIYDAASD-QDQSS 352

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 72.1 bits (176), Expect = 5e-14
 Identities = 24/250 (9%), Positives = 59/250 (23%), Gaps = 21/250 (8%)

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---- 459
           +I  +  +    L  G++  V+ +  S  G ++     D  + +    +           
Sbjct: 46  LIDGSTYEIKTVLDTGYA--VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI 103

Query: 460 -KGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVD-------- 509
                          +  Y  A +       I   + ++P +I +      D        
Sbjct: 104 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 163

Query: 510 ----CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMAS 564
                +  H    +I        + L D +    ++   I     +    +    RY  +
Sbjct: 164 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFIT 223

Query: 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
                  ++        +  +                     G    T  + D + +   
Sbjct: 224 AANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIG 283

Query: 625 LKTEEKSGTN 634
              E      
Sbjct: 284 TDPEGHPDNA 293

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 70.2 bits (171), Expect = 2e-13
 Identities = 22/153 (14%), Positives = 39/153 (25%), Gaps = 10/153 (6%)

Query: 490 WSMDRIQPLR---IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
           + M  ++      +            W +   +  T      + L D S+ E   +    
Sbjct: 2   FGMKEMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG 61

Query: 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC-----VTPLMGHTSCVWTLAYSCEG 601
              +    +S  GRY+     DG + M DL          +       S   +     E 
Sbjct: 62  -YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED 120

Query: 602 SLL-ASGSADCTVKLWDVTTSTKVLKTEEKSGT 633
               A         + D  T         +  T
Sbjct: 121 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.2 bits (132), Expect = 1e-08
 Identities = 40/330 (12%), Positives = 78/330 (23%), Gaps = 66/330 (20%)

Query: 346 TFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404
                 +         +     AG +      + D   L  + + S        T  E  
Sbjct: 103 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS----TRGMTYDEQE 158

Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY 464
             P  R  +  +   H  P           FI++      I L       NL   +    
Sbjct: 159 YHPEPRVAA--ILASHYRPE----------FIVNVKETGKILLVDYTDLNNLKTTEISAE 206

Query: 465 PV-WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
               D   +    YF ++++ R   +    +   L  +              N  +   G
Sbjct: 207 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG 266

Query: 524 SSDKTVRLWD--------------VSSGECVRIFIGHRSMILSLAMSPDGRYM------- 562
               T  + D               ++ + +  F       L +   P+ +Y+       
Sbjct: 267 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN 326

Query: 563 -----------------ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG---- 601
                                 D       +A       +      V    ++ +G    
Sbjct: 327 PEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVW 383

Query: 602 -SLLASGSADCTVKLWDVTTSTKVLKTEEK 630
            S+      +  + + D    T  LK   K
Sbjct: 384 FSVWNGKDQESALVVVD--DKTLELKHVIK 411

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 66.9 bits (162), Expect = 2e-12
 Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 9/153 (5%)

Query: 490 WSMDRIQP---LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
           W M  ++    + +              +   +  T      + L D  S + V++    
Sbjct: 2   WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG 61

Query: 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC-----VTPLMGHTSCVWTLAYSCEG 601
            + +    MS  GRY+     D  I M DL +        +   +   S   +     E 
Sbjct: 62  YA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED 120

Query: 602 SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTN 634
               +G+            + +  +     G  
Sbjct: 121 RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 61.1 bits (147), Expect = 2e-10
 Identities = 27/222 (12%), Positives = 56/222 (25%), Gaps = 8/222 (3%)

Query: 435 FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD- 493
           F ++      I L        +             + +  G Y      D    +  +  
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWA 92

Query: 494 ----RIQPLRIMAGHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFIGHRS 548
               ++  ++I     S            Y IA         + D  + E  +I      
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

Query: 549 MILSLAMSPDGR-YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG 607
            + +    P+ R        +    + ++     V  +        T+        LA G
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212

Query: 608 SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 649
             D + + +    +         S   RL +L  +     P 
Sbjct: 213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 254

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 58.8 bits (141), Expect = 9e-10
 Identities = 36/340 (10%), Positives = 90/340 (26%), Gaps = 67/340 (19%)

Query: 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN----------- 396
           I+T   ++ + +S  G  +     D+ + + D+       V+    G             
Sbjct: 58  IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG 117

Query: 397 ---------DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG------------DF 435
                       P +  I          +       V + ++ P              +F
Sbjct: 118 YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 177

Query: 436 ILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD- 493
           I++      + L + K   NL     G    + D  ++    YF +++++          
Sbjct: 178 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK 237

Query: 494 -----RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV-------RLWDVSSGECVR 541
                 +  +          + V       +  +   D ++       +     + + V 
Sbjct: 238 DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 297

Query: 542 IFIGHRSMILSLAMSPDGRYMA-------SGDEDGTIMMWDLASGRCVTPLMGHTSC--- 591
              G     L +   P   ++              ++ ++DL +      ++        
Sbjct: 298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL 357

Query: 592 ------VWTLAYSCEG-----SLLASGSADCTVKLWDVTT 620
                 V    Y+  G     S+    +    + + D  T
Sbjct: 358 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 397

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 64.5 bits (155), Expect = 7e-12
 Identities = 26/256 (10%), Positives = 60/256 (23%), Gaps = 19/256 (7%)

Query: 348 INTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406
           I   +    A IS DG+ +       + + + D A     A               D   
Sbjct: 28  IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQ 87

Query: 407 PNGRKRSYTLY-------------QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN 453
                 + +                         + SP G  +  ++           + 
Sbjct: 88  VYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147

Query: 454 ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV---DC 510
             ++           +   P G     ++ D  +          +       +       
Sbjct: 148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAV 207

Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDG 569
                            TV + D  + +              +A++PDG+ +  +     
Sbjct: 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCN 266

Query: 570 TIMMWDLASGRCVTPL 585
           T+ + D A+      +
Sbjct: 267 TVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 60.7 bits (145), Expect = 1e-10
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWDLA 577
           YI   S    + + DV+S +         S  +   +SPDG  +  +      + + D A
Sbjct: 5   YI-ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 578 SGRCVTPLMGHTSCVWTLAYSC 599
           +   +  +   +S         
Sbjct: 63  TNNVIATVPAGSSPQGVAVSPD 84

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 49.5 bits (116), Expect = 5e-07
 Identities = 29/270 (10%), Positives = 70/270 (25%), Gaps = 50/270 (18%)

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGH 462
           +I     K + T+    S P   A  SP G  +  +++    + +  T  N  +      
Sbjct: 16  VIDVTSNKVTATI-PVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG 73

Query: 463 NYPVWD-----------------------------------------VQFNPQGHYFASS 481
           + P                                            +  +P G     +
Sbjct: 74  SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVT 133

Query: 482 SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR 541
           ++            + +            +    +   +   + D        +    V 
Sbjct: 134 NNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193

Query: 542 IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW---DLASGRCVTPLMGHTSCVWTLAYS 598
             +   +    +A++P+G      + D         D  + +    +         +A +
Sbjct: 194 DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVT 252

Query: 599 CEGS-LLASGSADCTVKLWDVTTSTKVLKT 627
            +G  +  + S   TV + D  T+  +  T
Sbjct: 253 PDGKKVYVALSFCNTVSVIDTATN-TITAT 281

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 13/128 (10%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSS 536
           + ++S      +  +   +    +    S+        +   +    +    V + D ++
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596
              +       S           +   +     T+ + D  S       +        LA
Sbjct: 64  NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-VKTGKSPLGLA 122

Query: 597 YSCEGSLL 604
            S +G  L
Sbjct: 123 LSPDGKKL 130

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 59.5 bits (144), Expect = 6e-10
 Identities = 30/260 (11%), Positives = 59/260 (22%), Gaps = 54/260 (20%)

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK 411
           N         DG+  +   S +     D   +         Q   D           G+ 
Sbjct: 135 NAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM-----DVAWQVIVDGNLDNTDADYTGKY 189

Query: 412 RSYTLYQGHSGPV------------------YSASFSPLGDFILSSSADTTIRLWSTKLN 453
            + T Y                           A+    G+F           +     +
Sbjct: 190 ATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD-SKVPVVDGRGES 248

Query: 454 ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW 513
                      P          ++ A+     T  + ++D++  L      +   D +  
Sbjct: 249 EFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL--FEDKIELRDTIVA 306

Query: 514 HIN-------------CNYIATGSSDKTVRLWDVSSGEC---------------VRIFIG 545
                            N   T   D  V  W+++                   V+   G
Sbjct: 307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPG 366

Query: 546 HRSMILSLAMSPDGRYMASG 565
           H    L+ +   DG+++   
Sbjct: 367 HNHASLTESRDADGKWLVVL 386

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 23/238 (9%), Positives = 57/238 (23%), Gaps = 33/238 (13%)

Query: 409 GRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWST---KLNANLVCYKGHNY 464
           G  + Y     H   +        G ++  +  A+T +        K +           
Sbjct: 59  GGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQA- 117

Query: 465 PVWDVQFNPQGHY---FASSSH-----------DRTARIWSMDRIQP------LRIMAGH 504
            +  ++          F ++                        I         +++   
Sbjct: 118 -IHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD- 175

Query: 505 LSDVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM 562
             ++D         Y  +    S++ V L      +   + + +   I   A    G + 
Sbjct: 176 -GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIA--AAVKAGNFK 232

Query: 563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
             GD     ++           +    +             +A+G    TV +  +  
Sbjct: 233 TIGD-SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 11/82 (13%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 519 YIATGSSDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWD 575
           YIA     + + +W+++    + +   +     +  + +SPD RY+      +  ++ + 
Sbjct: 7   YIA-SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 576 LASGRCVTPLMGHTSCVWTLAY 597
           +A           ++   +L +
Sbjct: 66  IAPDDGALTFAAESALPGSLTH 87

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 10/122 (8%), Positives = 38/122 (31%), Gaps = 6/122 (4%)

Query: 478 FASSSHDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDV 534
           + +S   +   +W+++    L +         V  +    +  Y+      +  V  + +
Sbjct: 7   YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66

Query: 535 SSGECVRIFIGHRSMILS---LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC 591
           +  +    F    ++  S   ++    G+++  G  +   +            ++     
Sbjct: 67  APDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG 126

Query: 592 VW 593
           + 
Sbjct: 127 LD 128

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 27/282 (9%), Positives = 66/282 (23%), Gaps = 48/282 (17%)

Query: 346 TFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404
             ++    +    +S D   L  G   +  +  + +A     A++   +     +     
Sbjct: 31  QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP-DDGALTFAAESALPGSLTHIS 89

Query: 405 IGPNGRKRSYTLY---------------------QGHSGPVYSASFSPLGDFILSSSADT 443
               G+      Y                            +SA+ SP    +   +   
Sbjct: 90  TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ 149

Query: 444 TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503
                 T  +   +  +            P+   F  +             +    +   
Sbjct: 150 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 209

Query: 504 HLSDVDCVRWHINC-------------------NYIATGSSDKTVRLWDVSSGECVRIFI 544
           H +        +                     +  A   +   + ++ VS    V    
Sbjct: 210 HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE 269

Query: 545 GHRS---MILSLAMSPDGRYM-ASGDEDGTIMMW--DLASGR 580
           G +          +   G+Y+ A+G +   I ++      G 
Sbjct: 270 GFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 311

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 15/167 (8%), Positives = 40/167 (23%), Gaps = 10/167 (5%)

Query: 438 SSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDR 494
           +S     I +W+      L   +       V  +  +P   Y +     +     + +  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 495 IQPLRIMAGHLSDVDCVRW------HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS 548
                  A   +    +               +  + + +V   +      V   +    
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD 128

Query: 549 MILSLAMSPDGRYMASGDEDGTIMM-WDLASGRCVTPLMGHTSCVWT 594
              S  +SPD R +         +  + ++    +            
Sbjct: 129 GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE 175

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 12/121 (9%), Positives = 39/121 (32%), Gaps = 6/121 (4%)

Query: 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHI 515
               H      V  N +   F S +     ++++ +   ++ +         +       
Sbjct: 151 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSN 210

Query: 516 NCNYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
               IA   ++  + ++    G+ +         +    +A+  DG  + +  +D  + +
Sbjct: 211 GEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYI 268

Query: 574 W 574
           +
Sbjct: 269 Y 269

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 18/141 (12%), Positives = 41/141 (29%), Gaps = 12/141 (8%)

Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516
           V     + P + +  N      ++    R    + +D+     I  G    +       +
Sbjct: 316 VGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSD 375

Query: 517 CNYIATGSSDKT--------VRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMA---S 564
             Y  +              ++L D +   C+       R    S++ S + +Y     S
Sbjct: 376 YLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435

Query: 565 GDEDGTIMMWDLASGRCVTPL 585
           G       +    + + +  L
Sbjct: 436 GPGLPLYTLHSSVNDKGLRVL 456

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

 Score = 37.5 bits (86), Expect = 0.004
 Identities = 24/241 (9%), Positives = 57/241 (23%), Gaps = 18/241 (7%)

Query: 359 ISQDGSL--VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
              +      A     SS  V    ++  +A            PR +    N R      
Sbjct: 47  FDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPI-----GGHPRANDADTNTRAIFLLA 101

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
            +     VY+  F     +    S   T +L     N         N  +  + F+P   
Sbjct: 102 AKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE----YQENTGIHGMVFDPTET 157

Query: 477 Y-FASSSHDRTARIWSMDRIQPLRIMAG-HLSDVDCVRWHINCN-----YIATGSSDKTV 529
           Y +++                 + ++      D       +  +       A   +   +
Sbjct: 158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI 217

Query: 530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT 589
             + +     + ++  H   ++   +         G     +     +          + 
Sbjct: 218 CEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277

Query: 590 S 590
            
Sbjct: 278 F 278

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	656
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	100.0
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	100.0
d2j49a1	134	TAF5 subunit of TFIID {Saccharomyces cerevisiae [T	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.98
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.78
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.74
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.66
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.64
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.59
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.55
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.35
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.29
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.27
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.25
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.2
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.12
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.1
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.1
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.09
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.07
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.06
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.0
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.95
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.85
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.81
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.73
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.63
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.63
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.57
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.54
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.5
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.47
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.43
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.16
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.12
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.88
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.86
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.72
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.69
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.68
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.44
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.34
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.28
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.94
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.58
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.2
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.92
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.83
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.81
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.73
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.58
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.43
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.37
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.33
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.02
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.01
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.77
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.17
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.06
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.9
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.6
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	93.35
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.32
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.34
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.28
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.71
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	87.36
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	86.25
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	80.81

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-43  Score=318.43  Aligned_cols=149  Identities=29%  Similarity=0.559  Sum_probs=144.0

Q ss_pred             chhhcccccccccccCChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHH
Q 006220           47 DPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEM  126 (656)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~  126 (656)
                      +|++++.+.+|+ +++||+.|+++|.+||+||++|||+||+||.+|||||||||||+||++|+.++|+.||+||+++|..
T Consensus         1 ~~~~~~~l~~~~-~~~dp~~Ye~~y~~Lr~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~   79 (149)
T d2nxpa1           1 QPDVSAVLSAYN-QQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQEC   79 (149)
T ss_dssp             CCCHHHHHGGGS-SCCCTTSHHHHHHHHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCG
T ss_pred             CccHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhH
Confidence            357888888886 6799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEcC
Q 006220          127 MHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSP  196 (656)
Q Consensus       127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~  196 (656)
                      .|+++|++|++|++|+|+++|+++++||+|||+|+||++++++|++||+++++.+|++|||+||+|+|++
T Consensus        80 ~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s~~lLl~~L~~~~~~~il~Ii~~~l~i~v~d  149 (149)
T d2nxpa1          80 YYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFD  149 (149)
T ss_dssp             GGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHHHHTCEEEEEC
T ss_pred             HHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHHHHHHHHHHHhCCChHHHHHHHHHceeeeeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999974

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=100.00  E-value=1.5e-41  Score=297.59  Aligned_cols=131  Identities=32%  Similarity=0.726  Sum_probs=127.1

Q ss_pred             hHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcCCChhhhc
Q 006220           66 RYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLE  145 (656)
Q Consensus        66 ~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (656)
                      +|+++|.+||+||++|||+||+||.+|||||||||||+||++|+.++|++||+||+++|+ .|+++|++|++|++|+|++
T Consensus         1 q~e~~y~~Lr~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~   79 (131)
T d2j4ba1           1 QMETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIH   79 (131)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHh
Confidence            489999999999999999999999999999999999999999999999999999999997 5899999999999999999


Q ss_pred             cCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEcCC
Q 006220          146 EMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPG  197 (656)
Q Consensus       146 ~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~  197 (656)
                      +|+++++||+|||+|+||++++++|++||+++++++|++|||+|++|+|++|
T Consensus        80 ~n~~~~~~r~nKy~i~ms~~s~~lL~~fL~~~~~~~il~iin~~l~i~v~~g  131 (131)
T d2j4ba1          80 ENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHLDIKVYVG  131 (131)
T ss_dssp             HCHHHHHHHHSCEEEEEEHHHHHHHHHHHHHTTCHHHHHHHHHHEEEEEECC
T ss_pred             hhHHHHHHhcCceEEEeCHHHHHHHHHHHHhCCchHHHHHHHHheeEeeeCC
Confidence            9999999999999999999999999999999999999999999999999876

>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=6.9e-41  Score=294.15  Aligned_cols=131  Identities=34%  Similarity=0.628  Sum_probs=127.0

Q ss_pred             hhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcCCChhh
Q 006220           64 PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSH  143 (656)
Q Consensus        64 ~~~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~  143 (656)
                      |+.|+++|.+||+||++|||+||+||.+|||||||||||+||++|+ .+|++||++|+++|+..|+++|++|++|++|+|
T Consensus         1 P~~Ye~~y~~Lr~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~   79 (134)
T d2j49a1           1 PENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDH   79 (134)
T ss_dssp             CTTHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHH
T ss_pred             ChHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHH
Confidence            7899999999999999999999999999999999999999999985 689999999999999999999999999999999


Q ss_pred             hccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCc---chHhHhhcceeEEEEc
Q 006220          144 LEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGIINERINFQVS  195 (656)
Q Consensus       144 ~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~---~~~~~i~~~~~~~~~~  195 (656)
                      +++|+++++||+|||+|+||++++++|++||++++.   .+|++|||+||+|+|+
T Consensus        80 l~~n~~~~~~r~nKy~I~ms~~s~~lLl~fL~~~~~~g~~~il~ii~~~l~i~vv  134 (134)
T d2j49a1          80 IKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIV  134 (134)
T ss_dssp             HHHCHHHHHHHSSCEEEEECHHHHHHHHHHHHHTGGGTHHHHHHHHHHHEEEEEC
T ss_pred             HHhhHHHHHHHcCCeEEEEcHHHHHHHHHHHHhcccchHHHHHHHHHHhcceeeC
Confidence            999999999999999999999999999999999875   5899999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-36  Score=312.90  Aligned_cols=246  Identities=24%  Similarity=0.385  Sum_probs=220.9

Q ss_pred             EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      ..++.+|.+.|+|++|+|++++||+|+.||.|+|||+.+                            ......+.+|.++
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~----------------------------~~~~~~~~~~~~~   99 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT----------------------------TNKVHAIPLRSSW   99 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT----------------------------TEEEEEEECSCSC
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccc----------------------------ceeEEEEeccccc
Confidence            457889999999999999999999999999999999875                            3455667889999


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCce----eEE-----------------------------------------
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVC-----------------------------------------  458 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~----~~~-----------------------------------------  458 (656)
                      |.+++|+|++.++++|+.|+.+++|+......    ...                                         
T Consensus       100 v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (340)
T d1tbga_         100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT  179 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             EEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999998653211    111                                         


Q ss_pred             eeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 006220          459 YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE  538 (656)
Q Consensus       459 ~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~  538 (656)
                      ...+...+....+.+.+.++++|+.|+.+++||+++++++..+.+|...|++++|+|++++|++|+.||.|++||++...
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~  259 (340)
T d1tbga_         180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ  259 (340)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             ccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc
Confidence            12234556778888899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          539 CVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW  616 (656)
Q Consensus       539 ~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iW  616 (656)
                      .+..+.  .+...|++++|+|+|++|++|+.||.|++||+.+++++..+.+|.++|++++|+|++.+|+||+.||+|+||
T Consensus       260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            887664  456679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             e
Q 006220          617 D  617 (656)
Q Consensus       617 d  617 (656)
                      |
T Consensus       340 d  340 (340)
T d1tbga_         340 N  340 (340)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-36  Score=313.55  Aligned_cols=257  Identities=20%  Similarity=0.343  Sum_probs=228.4

Q ss_pred             EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      .....+|.+.|+|++|||+|++||+|+ ||.|+|||+......                       .........+|.+.
T Consensus        44 ~~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~-----------------------~~~~~~~~~~h~~~   99 (337)
T d1gxra_          44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK-----------------------SPVSQLDCLNRDNY   99 (337)
T ss_dssp             EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC-----------------------SCSEEEECSCTTSB
T ss_pred             EEEECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc-----------------------ceeEEeeecCCCCc
Confidence            334558899999999999999999996 899999998752211                       11223345689999


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCC--ceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      |.+++|+|++++|++|+.||+|++||+...  .....+.+|...+.+++|+|++.++++++.|+.+++|++.+.+.....
T Consensus       100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~  179 (337)
T d1gxra_         100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999998754  445667889999999999999999999999999999999999999999


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                      .+|...|.+++|++++..+++|+.|+.|++||+++++.+..+. |...|.+++|+|++++|++|+.||.|++||++++..
T Consensus       180 ~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~  258 (337)
T d1gxra_         180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             cccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccc
Confidence            9999999999999999999999999999999999999888764 888999999999999999999999999999988876


Q ss_pred             eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220          582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       582 ~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                      . ....|...|++++|+|++++|++|+.||.|++||+.+++.+..
T Consensus       259 ~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~  302 (337)
T d1gxra_         259 Y-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             E-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             c-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            5 4568999999999999999999999999999999998876644

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.7e-37  Score=315.63  Aligned_cols=261  Identities=20%  Similarity=0.261  Sum_probs=227.0

Q ss_pred             cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCC
Q 006220          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (656)
Q Consensus       330 ~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (656)
                      +.+.+|+...+... ..+.+|.+.|+|++|+|+|++||+|+.||.|+||++....                         
T Consensus        38 ~~v~i~~~~~~~~~-~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~-------------------------   91 (311)
T d1nr0a1          38 TSVYTVPVGSLTDT-EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT-------------------------   91 (311)
T ss_dssp             TEEEEEETTCSSCC-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT-------------------------
T ss_pred             CEEEEEECCCCcee-EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc-------------------------
Confidence            45667765444332 2457889999999999999999999999999999987521                         


Q ss_pred             CceeeEEeecCccCEEEEEEccCCCEEEEEeC--CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCE-EEEEECCCc
Q 006220          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRT  486 (656)
Q Consensus       410 ~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~sgs~Dg~  486 (656)
                       ......+.+|.++|.+++|+|++++|++++.  ++.+++|++++++....+.+|...|.+++|+|++.+ |++|+.||.
T Consensus        92 -~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~  170 (311)
T d1nr0a1          92 -HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT  170 (311)
T ss_dssp             -CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred             -cccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             1233457789999999999999999999886  456999999999999999999999999999999885 888999999


Q ss_pred             EEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-------cCCCCeEEEEEcCCC
Q 006220          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-------GHRSMILSLAMSPDG  559 (656)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-------~h~~~i~~l~~sp~g  559 (656)
                      |++||+++.+....+.+|...|.++.|+|+++++++|+.|+.|++||..++..+..+.       +|.+.|++++|+|+|
T Consensus       171 i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~  250 (311)
T d1nr0a1         171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG  250 (311)
T ss_dssp             EEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence            9999999999999999999999999999999999999999999999999998887764       588899999999999


Q ss_pred             CEEEEEECCCcEEEEeCCCCeeeEeeeCCC---ccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          560 RYMASGDEDGTIMMWDLASGRCVTPLMGHT---SCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       560 ~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~---~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      ++|++|+.||.|+|||+++++++..+..|.   ..+.++.|+  ++.|++++.||.|++||.+
T Consensus       251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~--~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC--SSCEEEEETTCCEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec--CCEEEEEECCCEEEEEeCC
Confidence            999999999999999999999999988765   345555555  5579999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-36  Score=305.80  Aligned_cols=277  Identities=28%  Similarity=0.476  Sum_probs=250.1

Q ss_pred             CCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceee
Q 006220          335 SSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY  414 (656)
Q Consensus       335 ~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (656)
                      |.+..|..  +++.+|.+.|+|++|+|++++||+|+.||+|+|||+.+                            ....
T Consensus         3 w~p~~~~~--~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~----------------------------~~~~   52 (317)
T d1vyhc1           3 WIPRPPEK--YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----------------------------GDFE   52 (317)
T ss_dssp             CCCCSSCS--CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT----------------------------CCCC
T ss_pred             cCCCCCcc--EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------CCEE
Confidence            44433433  46789999999999999999999999999999999875                            2344


Q ss_pred             EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC
Q 006220          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (656)
Q Consensus       415 ~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~  494 (656)
                      ..+.+|.++|.+++|+|++.++++++.++.+.+|+.........+.+|...+.++.|+|++..+++++.|+.+++||+++
T Consensus        53 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  132 (317)
T d1vyhc1          53 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT  132 (317)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             EEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeeccc
Confidence            56778999999999999999999999999999999998888888899999999999999999999999999999999999


Q ss_pred             CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC---------------
Q 006220          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---------------  559 (656)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g---------------  559 (656)
                      ++.+..+.+|...+.+++|+|++++|++|+.|+.|++|++.++.....+.+|...+.++.|+|++               
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  212 (317)
T d1vyhc1         133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK  212 (317)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred             ceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeee
Confidence            99999999999999999999999999999999999999999999999999999999999998753               


Q ss_pred             -----CEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCc
Q 006220          560 -----RYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTN  634 (656)
Q Consensus       560 -----~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~  634 (656)
                           .++++++.||.|++||+.+++++..+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+          
T Consensus       213 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------  282 (317)
T d1vyhc1         213 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM----------  282 (317)
T ss_dssp             ----CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC----------
T ss_pred             eccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEE----------
Confidence                 47899999999999999999999999999999999999999999999999999999999876543          


Q ss_pred             cccccccccCCCCCeEEEEEcC
Q 006220          635 RLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       635 ~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                           ..+..+..+|.+|+|++
T Consensus       283 -----~~~~~h~~~V~~~~~s~  299 (317)
T d1vyhc1         283 -----KTLNAHEHFVTSLDFHK  299 (317)
T ss_dssp             -----EEEECCSSCEEEEEECS
T ss_pred             -----EEEcCCCCCEEEEEEcC
Confidence                 34455667787777764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=308.52  Aligned_cols=261  Identities=20%  Similarity=0.329  Sum_probs=233.2

Q ss_pred             ccceecCCCCCC----ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220          329 RNRVHLSSAALP----SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (656)
Q Consensus       329 ~~~v~l~~~~~p----s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (656)
                      ...+++|+...+    ........+|.+.|+|++|+||+++|++|+.||.|++||+...                     
T Consensus        71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~---------------------  129 (337)
T d1gxra_          71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP---------------------  129 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------------
T ss_pred             CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccc---------------------
Confidence            456888865332    3344455678889999999999999999999999999998641                     


Q ss_pred             cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC
Q 006220          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (656)
Q Consensus       405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D  484 (656)
                           .......+.+|...|.+++|+|++.++++++.|+.|++|++.+++......+|..+|.+++|++++..+++|+.|
T Consensus       130 -----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d  204 (337)
T d1gxra_         130 -----TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             -------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             -----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                 123445677899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (656)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s  564 (656)
                      +.+++||+++++.+..+. |...|.+++|+|+++++++|+.|+.|++||++++.... ...|...|++++|+|+|++|++
T Consensus       205 ~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s  282 (337)
T d1gxra_         205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccccc-ccccccccceEEECCCCCEEEE
Confidence            999999999998887765 78899999999999999999999999999999888764 5679999999999999999999


Q ss_pred             EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      |+.||.|++||+.+++.+..+ .|.+.|++++|+|++++|++|+.||+|+|||+
T Consensus       283 ~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         283 TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            999999999999999988776 47789999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6e-36  Score=308.44  Aligned_cols=249  Identities=22%  Similarity=0.346  Sum_probs=223.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      .+...+++++|+|+.||.+. ++.|.+|++..                            ......+.+|.+.|++++|+
T Consensus        17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~----------------------------~~~~~~~~~H~~~v~~~~~s   67 (311)
T d1nr0a1          17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS----------------------------LTDTEIYTEHSHQTTVAKTS   67 (311)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTC----------------------------SSCCEEECCCSSCEEEEEEC
T ss_pred             CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC----------------------------CceeEEEcCCCCCEEEEEEe
Confidence            34567889999999999984 66799999875                            22344578999999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCcee--EEeeCCCccEEEEEEecCCCEEEEEEC--CCcEEEEECCCCceeEEecCCCC
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANL--VCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMAGHLS  506 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~--~~~~~h~~~V~~l~~sp~~~~l~sgs~--Dg~i~lwd~~~~~~~~~~~~~~~  506 (656)
                      |+|++|++|+.||+|++||+.++...  ..+.+|..+|.+++|+|++.++++++.  ++.+++|+++++++...+.+|..
T Consensus        68 p~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~  147 (311)
T d1nr0a1          68 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQAR  147 (311)
T ss_dssp             TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSS
T ss_pred             CCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999987654  457889999999999999999999985  46699999999999999999999


Q ss_pred             CeeEEEEcCCCCE-EEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220          507 DVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       507 ~V~~v~~~p~~~~-l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      .|.+++|+|++++ |++|+.||.|++||+++++....+.+|..+|+++.|+|++++|++++.||.|++||+.++..+..+
T Consensus       148 ~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~  227 (311)
T d1nr0a1         148 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF  227 (311)
T ss_dssp             CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred             ccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccc
Confidence            9999999999885 788999999999999999999999999999999999999999999999999999999998877765


Q ss_pred             e-------CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          586 M-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       586 ~-------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      .       +|.+.|++++|+|++++|++|+.||+|+|||+.+++......
T Consensus       228 ~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~  277 (311)
T d1nr0a1         228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP  277 (311)
T ss_dssp             BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE
Confidence            3       588999999999999999999999999999999887665443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.1e-35  Score=307.07  Aligned_cols=286  Identities=25%  Similarity=0.428  Sum_probs=226.5

Q ss_pred             ceecCCCCCCce---eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220          331 RVHLSSAALPSV---SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (656)
Q Consensus       331 ~v~l~~~~~ps~---~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (656)
                      ...+|+...+..   .+...++|.+.|+|++|||||++||+|+ |+.|+||++.+..............          .
T Consensus        39 ~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~----------~  107 (388)
T d1erja_          39 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN----------K  107 (388)
T ss_dssp             CEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------------
T ss_pred             cEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccc----------c
Confidence            445666655543   3345567999999999999999999996 8999999998654332211100000          0


Q ss_pred             CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcE
Q 006220          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (656)
Q Consensus       408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i  487 (656)
                      ...........+|...|++++|+|++++|++|+.||+|++|+...++.+....+|...|.++.|++++..+++|+.++.+
T Consensus       108 ~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i  187 (388)
T d1erja_         108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV  187 (388)
T ss_dssp             -----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceee
Confidence            00111223455788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-------ecCCCCeEEEEEcCCCC
Q 006220          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-------IGHRSMILSLAMSPDGR  560 (656)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-------~~h~~~i~~l~~sp~g~  560 (656)
                      ++||..+.........+...+....+.+++++|++|+.||.|++||.+++..+..+       .+|.++|++++|+|+++
T Consensus       188 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  267 (388)
T d1erja_         188 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ  267 (388)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred             eeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC
Confidence            99999998888777766554444444458899999999999999999998877654       36888999999999999


Q ss_pred             EEEEEECCCcEEEEeCCCCe------------eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          561 YMASGDEDGTIMMWDLASGR------------CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       561 ~L~s~~~dg~I~iwD~~~~~------------~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      +|++|+.||.|++||+.++.            +......|...|.+++|+|++++|++|+.||.|++||+.+++.+...
T Consensus       268 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l  346 (388)
T d1erja_         268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML  346 (388)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            99999999999999997653            34455678899999999999999999999999999999988765443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-35  Score=311.77  Aligned_cols=245  Identities=20%  Similarity=0.281  Sum_probs=213.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      .++|+|++|||||++||+|+.||.|+||++...                          .......+.+|.++|.+++|+
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~--------------------------~~~~~~~l~gH~~~V~~l~fs   60 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN--------------------------KWVQVHELKEHNGQVTGVDWA   60 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETT--------------------------EEEEEEEEECCSSCEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCC--------------------------CEEEEEEecCCCCCEEEEEEC
Confidence            367999999999999999999999999998641                          123456688999999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCce--eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee----EEecCC
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL----RIMAGH  504 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~----~~~~~~  504 (656)
                      |++++|++|+.|++|++||+.++..  ...+.+|..+|.+++|+|++++|++|+.|+++++|+++.....    ....+|
T Consensus        61 p~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~  140 (371)
T d1k8kc_          61 PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI  140 (371)
T ss_dssp             TTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC
T ss_pred             CCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccc
Confidence            9999999999999999999987654  4455678999999999999999999999999999998765533    334578


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC------------------CeeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------------------GECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~------------------~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~  566 (656)
                      ...|.+++|+|++++|++|+.|++|++||...                  +..+....+|...|.+++|+|+|++|++++
T Consensus       141 ~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  220 (371)
T d1k8kc_         141 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS  220 (371)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             ccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc
Confidence            89999999999999999999999999999854                  235566678999999999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (656)
Q Consensus       567 ~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~  622 (656)
                      .||.|++||+.++..+..+..|..+|.+++|+|++++|++| .|+.+++|......
T Consensus       221 ~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~  275 (371)
T d1k8kc_         221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAA  275 (371)
T ss_dssp             TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTT
T ss_pred             cCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCCC
Confidence            99999999999999999999999999999999999877755 57877777665543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.4e-34  Score=286.74  Aligned_cols=260  Identities=28%  Similarity=0.525  Sum_probs=239.7

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+.... .+..++..|.+.|++++|+|++.++++++.++.+.+|+...                          
T Consensus        38 Dg~i~iWd~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------   90 (317)
T d1vyhc1          38 DATIKVWDYETG-DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--------------------------   90 (317)
T ss_dssp             SSCEEEEETTTC-CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--------------------------
T ss_pred             CCeEEEEECCCC-CEEEEEeCCCCcEEEEeeecccccccccccccccccccccc--------------------------
Confidence            457888976543 33456778899999999999999999999999999999764                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~  488 (656)
                        ......+.+|...+.++.|+|++..+++++.|+.+++||+.++..+..+.+|...+.+++|+|++.+|++++.|+.++
T Consensus        91 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~  168 (317)
T d1vyhc1          91 --FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  168 (317)
T ss_dssp             --SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             --cccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence              223445667899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEecCCCCCeeEEEEcCCC--------------------CEEEEEECCCcEEEEeCCCCeeEEEEecCCC
Q 006220          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINC--------------------NYIATGSSDKTVRLWDVSSGECVRIFIGHRS  548 (656)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~--------------------~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~  548 (656)
                      +|++.+.+....+.+|...+.+++|+|++                    .++++|+.|+.|++||+++++++..+.+|..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  248 (317)
T d1vyhc1         169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  248 (317)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence            99999999999999999999999998754                    4689999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      +|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++++|++|+.||+|+|||
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-33  Score=294.67  Aligned_cols=245  Identities=27%  Similarity=0.550  Sum_probs=213.2

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      ...+...|+|++|+|++++|++|+.||.|++|+...                            ........+|...|.+
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~----------------------------~~~~~~~~~h~~~v~~  168 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN----------------------------RKIVMILQGHEQDIYS  168 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------TEEEEEECCCSSCEEE
T ss_pred             ccCCCCCEEEEEECCCCCcceecccccccccccccc----------------------------cccccccccccccccc
Confidence            345677899999999999999999999999999864                            3455667889999999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-----
Q 006220          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-----  501 (656)
Q Consensus       427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~-----  501 (656)
                      +.|++++..+++|+.++.|++||..+.........+...+....+.+++.+|++|+.||.|++|+..++.....+     
T Consensus       169 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~  248 (388)
T d1erja_         169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE  248 (388)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred             cccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccc
Confidence            999999999999999999999999988888777766655554444558899999999999999999988776654     


Q ss_pred             --cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCe------------eEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          502 --AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE------------CVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       502 --~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~------------~~~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                        .+|...|.+++|+|++++|++|+.||.|++||++++.            +......|...|.+++|+|+|++|++|+.
T Consensus       249 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~  328 (388)
T d1erja_         249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK  328 (388)
T ss_dssp             --CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence              3688899999999999999999999999999997653            34456678999999999999999999999


Q ss_pred             CCcEEEEeCCCCeeeEeeeCCCccEEEEEE------cCCCCEEEEEECCCcEEEEeCC
Q 006220          568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAY------SCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       568 dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~------s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      ||.|++||+.+++++..+.+|.+.|.++++      +|++.+|+||+.||+|+||+++
T Consensus       329 dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999999999999999999999999975      5689999999999999999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.4e-33  Score=291.43  Aligned_cols=265  Identities=17%  Similarity=0.172  Sum_probs=218.0

Q ss_pred             cceecCCCCCCc-eeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          330 NRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       330 ~~v~l~~~~~ps-~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ..+++|+..... .+...+.+|.+.|++++|+|++++|++|+.|+.|+||++...                         
T Consensus        29 ~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~-------------------------   83 (371)
T d1k8kc_          29 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-------------------------   83 (371)
T ss_dssp             SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT-------------------------
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc-------------------------
Confidence            468888765544 345667889999999999999999999999999999998741                         


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee----EEeeCCCccEEEEEEecCCCEEEEEECC
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL----VCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~----~~~~~h~~~V~~l~~sp~~~~l~sgs~D  484 (656)
                       .......+.+|...|++++|+|+++.|++|+.|++|++|++......    .....|...|.+++|+|++.+|++|+.|
T Consensus        84 -~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_          84 -TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             -EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             -ccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccC
Confidence             12234456689999999999999999999999999999998866543    3345688999999999999999999999


Q ss_pred             CcEEEEECCCC------------------ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC
Q 006220          485 RTARIWSMDRI------------------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH  546 (656)
Q Consensus       485 g~i~lwd~~~~------------------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h  546 (656)
                      +++++|+....                  ..+....+|...|.+++|+|++++|++++.|+.|++||+.++..+..+..|
T Consensus       163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  242 (371)
T d1k8kc_         163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE  242 (371)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred             cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecc
Confidence            99999997532                  245566789999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--CeeeE---------------------------------------ee
Q 006220          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLAS--GRCVT---------------------------------------PL  585 (656)
Q Consensus       547 ~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~--~~~~~---------------------------------------~~  585 (656)
                      ..+|.+++|+|+|++|++| .|+.+++|....  +....                                       ..
T Consensus       243 ~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (371)
T d1k8kc_         243 TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD  321 (371)
T ss_dssp             SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred             cccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceec
Confidence            9999999999999888765 477777665432  11100                                       00


Q ss_pred             eCCCccEEEEEEcCCC----CEEEEEECCCcEEEEeCCCC
Q 006220          586 MGHTSCVWTLAYSCEG----SLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       586 ~~h~~~V~~l~~s~~~----~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      ..|.+.|+++++.+.+    ..++|+|.||.|+|||+++.
T Consensus       322 ~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             ccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence            1388899999997744    46999999999999998653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.5e-32  Score=277.35  Aligned_cols=246  Identities=15%  Similarity=0.253  Sum_probs=190.2

Q ss_pred             EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      ..++.+|.+.|+|++|+||+++||+|+.||.|++||+.+.....                           ....+|.+.
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~---------------------------~~~~~h~~~   57 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR---------------------------VFPDVHATM   57 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---------------------------CSSCSCSSC
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---------------------------EEcCCCCCc
Confidence            34678999999999999999999999999999999987532211                           112346667


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCce-----------------------------------------eEEeeCC
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNAN-----------------------------------------LVCYKGH  462 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~-----------------------------------------~~~~~~h  462 (656)
                      |++++|+|++. +++++.|+++++|+......                                         ... ...
T Consensus        58 v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~-~~~  135 (299)
T d1nr0a2          58 ITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE-VPI  135 (299)
T ss_dssp             EEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE-EEC
T ss_pred             EEEEEeeccce-eecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            77777777665 34445566677776432100                                         000 012


Q ss_pred             CccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE-EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeE-
Q 006220          463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV-  540 (656)
Q Consensus       463 ~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~-~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~-  540 (656)
                      ...+.+++|+|++.++++|+.||.+++||+++.+... ....|...|.+++|+|++.+|++|+.|+.|++||+.++... 
T Consensus       136 ~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3457789999999999999999999999998776544 33468899999999999999999999999999999887654 


Q ss_pred             --EEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE--eeeCC-CccEEEEEEcCCCCEEEEEECCCcEEE
Q 006220          541 --RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT--PLMGH-TSCVWTLAYSCEGSLLASGSADCTVKL  615 (656)
Q Consensus       541 --~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~--~~~~h-~~~V~~l~~s~~~~~l~sgs~Dg~I~i  615 (656)
                        ..+.+|..+|++++|+|+|++|++|+.||.|++||+.++....  ....| ...|.++.| +++.+|++|+.||+|++
T Consensus       216 ~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~i  294 (299)
T d1nr0a2         216 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKF  294 (299)
T ss_dssp             CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEE
T ss_pred             ccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEE
Confidence              3456789999999999999999999999999999998765433  22334 456777655 56779999999999999


Q ss_pred             EeCC
Q 006220          616 WDVT  619 (656)
Q Consensus       616 Wd~~  619 (656)
                      ||+.
T Consensus       295 Wdl~  298 (299)
T d1nr0a2         295 WNVP  298 (299)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9984

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.2e-32  Score=278.67  Aligned_cols=255  Identities=15%  Similarity=0.171  Sum_probs=209.9

Q ss_pred             eEEEEeeCC-CCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec
Q 006220          343 SFYTFINTH-NGLNCASISQ--DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (656)
Q Consensus       343 ~~~~~~~~~-~~V~~l~fs~--dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  419 (656)
                      ....+.+|+ ..|+|++|+|  ++.+||+|+.||+|+|||+.........                    .......+..
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~--------------------~~~~~~~~~~  113 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV--------------------EVNVKSEFQV  113 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE--------------------EEEEEEEEEC
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeee--------------------eccccccccc
Confidence            344566665 5699999998  5789999999999999998753221110                    0122234667


Q ss_pred             CccCEEEEEEccCCCEEEEEeC--CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCE-EEEEECCCcEEEEECCCCc
Q 006220          420 HSGPVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQ  496 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~sgs~Dg~i~lwd~~~~~  496 (656)
                      |.++|.+++|+++++++++++.  ++.+++|+.++++.+..+.+|..+|.+++|+|++.+ +++++.|+.+++||....+
T Consensus       114 ~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  193 (325)
T d1pgua1         114 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK  193 (325)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred             ccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccc
Confidence            9999999999999999887764  678999999999999999999999999999998865 6789999999999998877


Q ss_pred             eeEEec---CCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEc---CCCCEEEEEECCC
Q 006220          497 PLRIMA---GHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS---PDGRYMASGDEDG  569 (656)
Q Consensus       497 ~~~~~~---~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~s---p~g~~L~s~~~dg  569 (656)
                      ....+.   +|...|.+++|+|+ +.++++|+.||.|++||+++++++..+.+|..++.++.|+   |+|++|++++.||
T Consensus       194 ~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~  273 (325)
T d1pgua1         194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA  273 (325)
T ss_dssp             EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS
T ss_pred             cceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCC
Confidence            665544   56778999999996 6889999999999999999999999999998887766666   7899999999999


Q ss_pred             cEEEEeCCCCeeeEeeeCCCc--cEE--EEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          570 TIMMWDLASGRCVTPLMGHTS--CVW--TLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       570 ~I~iwD~~~~~~~~~~~~h~~--~V~--~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      .|+|||+.+++++..+..|..  .+.  ++.|.++ .+|++|+.||.|+|||+
T Consensus       274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         274 TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             eEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            999999999999998876653  333  3444433 47899999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.3e-31  Score=271.17  Aligned_cols=230  Identities=23%  Similarity=0.440  Sum_probs=201.7

Q ss_pred             eeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEE
Q 006220          412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (656)
Q Consensus       412 ~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd  491 (656)
                      +..+++.||.++|++++|+|++++|++|+.||+|++||+.++..+..+..|..+|.+++|+|++.++++|+.|+.+++|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            45577999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCc----ee-----------------------------------------EEecCCCCCeeEEEEcCCCCEEEEEECC
Q 006220          492 MDRIQ----PL-----------------------------------------RIMAGHLSDVDCVRWHINCNYIATGSSD  526 (656)
Q Consensus       492 ~~~~~----~~-----------------------------------------~~~~~~~~~V~~v~~~p~~~~l~tgs~d  526 (656)
                      .....    ..                                         .....+...+.+..+.+.+.++++|+.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence            65321    11                                         1112344567788888999999999999


Q ss_pred             CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee--CCCccEEEEEEcCCCCEE
Q 006220          527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM--GHTSCVWTLAYSCEGSLL  604 (656)
Q Consensus       527 g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l  604 (656)
                      +.|++||+++++++..+.+|.++|++++|+|++++|++|+.||.|++||+.....+..+.  .|...|.+++|+|++++|
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEE
T ss_pred             ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEE
Confidence            999999999999999999999999999999999999999999999999999998877664  566789999999999999


Q ss_pred             EEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220          605 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR  656 (656)
Q Consensus       605 ~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr  656 (656)
                      ++|+.||.|++||+.+++.+               ..+..|..+|.+|+|++
T Consensus       286 ~~g~~dg~i~iwd~~~~~~~---------------~~~~~H~~~V~~l~~s~  322 (340)
T d1tbga_         286 LAGYDDFNCNVWDALKADRA---------------GVLAGHDNRVSCLGVTD  322 (340)
T ss_dssp             EEEETTSCEEEEETTTCCEE---------------EEECCCSSCEEEEEECT
T ss_pred             EEEECCCEEEEEECCCCcEE---------------EEEcCCCCCEEEEEEeC
Confidence            99999999999999876543               34556677788887764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=8.3e-31  Score=271.03  Aligned_cols=251  Identities=20%  Similarity=0.257  Sum_probs=207.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCc-EEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC-ccCEEEEEE
Q 006220          352 NGLNCASISQDGSLVAGGFSDSS-LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH-SGPVYSASF  429 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g~~dg~-I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~~  429 (656)
                      +.+++++|+|+++.||+++.++. |+.|+...                          ........+.+| ...|++++|
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~--------------------------~~~~~~~~~~gh~~~~v~~v~f   71 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGD--------------------------SKVPPVVQFTGHGSSVVTTVKF   71 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSC--------------------------CSSCSEEEECTTTTSCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCC--------------------------CCccceEEEeCCCCCCEEEEEE
Confidence            35789999999999999865543 45555332                          112234556677 578999999


Q ss_pred             cc--CCCEEEEEeCCCeEEEEeccCCcee--------EEeeCCCccEEEEEEecCCCEEEEEEC--CCcEEEEECCCCce
Q 006220          430 SP--LGDFILSSSADTTIRLWSTKLNANL--------VCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQP  497 (656)
Q Consensus       430 sp--d~~~L~s~s~Dg~I~lwd~~~~~~~--------~~~~~h~~~V~~l~~sp~~~~l~sgs~--Dg~i~lwd~~~~~~  497 (656)
                      +|  ++.+|++|+.||+|++||+..+...        ..+..|..+|.+++|++++.++++++.  ++.+++|+.++++.
T Consensus        72 sP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~  151 (325)
T d1pgua1          72 SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS  151 (325)
T ss_dssp             CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE
T ss_pred             eeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc
Confidence            98  5679999999999999998755432        234568899999999999999988764  67899999999999


Q ss_pred             eEEecCCCCCeeEEEEcCCCCE-EEEEECCCcEEEEeCCCCeeEEEEe---cCCCCeEEEEEcCC-CCEEEEEECCCcEE
Q 006220          498 LRIMAGHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFI---GHRSMILSLAMSPD-GRYMASGDEDGTIM  572 (656)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~-l~tgs~dg~V~iwd~~~~~~~~~~~---~h~~~i~~l~~sp~-g~~L~s~~~dg~I~  572 (656)
                      +..+.+|...|.+++|+|++.+ +++++.|+.|++||..+++....+.   +|...|++++|+|+ +.+|++|+.||.|+
T Consensus       152 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~  231 (325)
T d1pgua1         152 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS  231 (325)
T ss_dssp             EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred             ceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccccccee
Confidence            9999999999999999998875 6789999999999999887766654   56678999999996 68999999999999


Q ss_pred             EEeCCCCeeeEeeeCCCccEEEEEEc---CCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220          573 MWDLASGRCVTPLMGHTSCVWTLAYS---CEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       573 iwD~~~~~~~~~~~~h~~~V~~l~~s---~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      +||+++++++..+.+|..++.++.|+   ++|++|++++.|+.|+|||+.+++.+....
T Consensus       232 iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~  290 (325)
T d1pgua1         232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT  290 (325)
T ss_dssp             EEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE
Confidence            99999999999999888777655555   689999999999999999999988765543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.5e-30  Score=266.06  Aligned_cols=245  Identities=22%  Similarity=0.441  Sum_probs=192.7

Q ss_pred             EEEEeeCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          344 FYTFINTHNGL-NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       344 ~~~~~~~~~~V-~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      ..++.+|.+.| +|++|  ++++||+|+.||.|+|||+.+                            .+....+.+|.+
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~----------------------------~~~~~~l~~H~~   54 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN----------------------------KKFLLQLSGHDG   54 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTT----------------------------TEEEEEEECCSS
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCC----------------------------CcEEEEEECCCC
Confidence            45678898875 67665  578999999999999999875                            346677889999


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC--CccEEEEEEecCCCEEEEEECCCcEEEEECC-------
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQGHYFASSSHDRTARIWSMD-------  493 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~-------  493 (656)
                      +|++++|+|+ .+|++|+.||+|++|+............+  ...+....+++++.++++++.|+.|++||+.       
T Consensus        55 ~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~  133 (355)
T d1nexb2          55 GVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD  133 (355)
T ss_dssp             CEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------
T ss_pred             CEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecc
Confidence            9999999985 58999999999999999877665544332  2233444555566666666666666666654       


Q ss_pred             --------------------------------------------------------CCceeEEecCCCCCeeEEEEcCCC
Q 006220          494 --------------------------------------------------------RIQPLRIMAGHLSDVDCVRWHINC  517 (656)
Q Consensus       494 --------------------------------------------------------~~~~~~~~~~~~~~V~~v~~~p~~  517 (656)
                                                                              +.+.+....++...+.++.|+|++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (355)
T d1nexb2         134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER  213 (355)
T ss_dssp             -----CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred             ccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccc
Confidence                                                                    333444455677778899999999


Q ss_pred             CEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEE-E
Q 006220          518 NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTL-A  596 (656)
Q Consensus       518 ~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l-~  596 (656)
                      .++++++.|+.|++||++++.++..+.+|...|.+++++  +++|++|+.||.|++||++++....  ..|...+.++ .
T Consensus       214 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~  289 (355)
T d1nexb2         214 KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITT  289 (355)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCE
T ss_pred             eeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccceec--ccccCCceEEEE
Confidence            999999999999999999999999999999999999997  5799999999999999998876543  4455555555 4


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          597 YSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       597 ~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      +++++.++++| .||.|+|||+.+++.+
T Consensus       290 ~~~~~~~l~~g-~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         290 FYVSDNILVSG-SENQFNIYNLRSGKLV  316 (355)
T ss_dssp             EEECSSEEEEE-ETTEEEEEETTTCCBC
T ss_pred             EcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence            56777777666 4899999999987754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8e-29  Score=253.28  Aligned_cols=246  Identities=26%  Similarity=0.536  Sum_probs=199.5

Q ss_pred             EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      .++.+|.+.|.+ +++++|++||+|+.||.|+|||+.+                            .+....+.+|.++|
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~----------------------------~~~~~~~~~h~~~V   60 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT----------------------------GKCLRTLVGHTGGV   60 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT----------------------------CCEEEECCCCSSCE
T ss_pred             EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC----------------------------CCEEEEEeCCCCCE
Confidence            357789998865 3666899999999999999999875                            23556788999999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEE-------------------------------------
Q 006220          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-------------------------------------  467 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-------------------------------------  467 (656)
                      ++++|+|  .+|++|+.|+++++|+............+...+.                                     
T Consensus        61 ~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  138 (342)
T d2ovrb2          61 WSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA  138 (342)
T ss_dssp             EEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred             EEEEeCC--CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccc
Confidence            9999996  4999999999999999875544333222221111                                     


Q ss_pred             -EEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC
Q 006220          468 -DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH  546 (656)
Q Consensus       468 -~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h  546 (656)
                       ...+.+....+++++.|+.+++||......+..+.+|...+.++.  +++.++++|+.||.|++||++.++++..+.+|
T Consensus       139 ~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~  216 (342)
T d2ovrb2         139 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH  216 (342)
T ss_dssp             CEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             cceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccceeeeEeccc
Confidence             122334566788899999999999999999999988877666655  47889999999999999999999999999999


Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC---CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (656)
Q Consensus       547 ~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~---h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~  623 (656)
                      ...+.++.++  +++|++|+.||.|++||+...+....+..   |...+.++.++  ++++++|+.||+|++||+.+++.
T Consensus       217 ~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~  292 (342)
T d2ovrb2         217 QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF  292 (342)
T ss_dssp             CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred             ccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCE
Confidence            9999988876  56999999999999999999888777764   55677777775  56999999999999999999887


Q ss_pred             eeec
Q 006220          624 VLKT  627 (656)
Q Consensus       624 ~~~~  627 (656)
                      +...
T Consensus       293 i~~~  296 (342)
T d2ovrb2         293 IRNL  296 (342)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.1e-28  Score=250.30  Aligned_cols=212  Identities=19%  Similarity=0.301  Sum_probs=180.0

Q ss_pred             eeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee-CCCccEEEEEEecCCCEEEEEECCCcEEEE
Q 006220          412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIW  490 (656)
Q Consensus       412 ~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lw  490 (656)
                      ...+.+.||.++|++++|+|++++|++|+.||+|++||+.+++.+..+. +|..+|++++|+|++. +++++.|+.+++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEe
Confidence            4567899999999999999999999999999999999999998887774 6899999999999987 5567789999999


Q ss_pred             ECCCCce---------------------------------eEEec-------CCCCCeeEEEEcCCCCEEEEEECCCcEE
Q 006220          491 SMDRIQP---------------------------------LRIMA-------GHLSDVDCVRWHINCNYIATGSSDKTVR  530 (656)
Q Consensus       491 d~~~~~~---------------------------------~~~~~-------~~~~~V~~v~~~p~~~~l~tgs~dg~V~  530 (656)
                      +......                                 +..+.       .....+.+++|+|+++++++|+.||.|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  161 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVH  161 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             ccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8643210                                 00000       1234578899999999999999999999


Q ss_pred             EEeCCCCeeEE-EEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE---eeeCCCccEEEEEEcCCCCEEEE
Q 006220          531 LWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT---PLMGHTSCVWTLAYSCEGSLLAS  606 (656)
Q Consensus       531 iwd~~~~~~~~-~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~---~~~~h~~~V~~l~~s~~~~~l~s  606 (656)
                      +||++++.... ....|..+|++++|+|++++|++++.||.|++||+.++..+.   .+.+|...|++++|+|++.+|++
T Consensus       162 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  241 (299)
T d1nr0a2         162 VYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT  241 (299)
T ss_dssp             EEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEE
Confidence            99999887654 345789999999999999999999999999999998876553   45578999999999999999999


Q ss_pred             EECCCcEEEEeCCCCCce
Q 006220          607 GSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       607 gs~Dg~I~iWd~~~~~~~  624 (656)
                      |+.||.|++||+.++...
T Consensus       242 gs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         242 GSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             EETTSCEEEEETTCTTSC
T ss_pred             EcCCCEEEEEECCCCCcc
Confidence            999999999999886543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.8e-28  Score=260.08  Aligned_cols=257  Identities=19%  Similarity=0.270  Sum_probs=195.0

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      ..+|.+.|.++++++  +++++|+.|++|+||+........                      ..........|...+..
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~----------------------~~~~~~~~~~~~~~~~~   65 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN----------------------PKDKSYSHFVHKSGLHH   65 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC----------------------GGGGEEEEECCTTCEEE
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCc----------------------ccceeEeeeeccCCceE
Confidence            457889999999875  699999999999999976422110                      01112222334433322


Q ss_pred             E------EEcc-CCCEEEEEeCCCeEEEEeccCCceeEEe----------eCCCccEEEEEEecC-----CCEEEEEECC
Q 006220          427 A------SFSP-LGDFILSSSADTTIRLWSTKLNANLVCY----------KGHNYPVWDVQFNPQ-----GHYFASSSHD  484 (656)
Q Consensus       427 l------~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~----------~~h~~~V~~l~~sp~-----~~~l~sgs~D  484 (656)
                      +      ..+. ++.++++++.||.|++|++.........          ..+...++.++|.++     +.++++++.|
T Consensus        66 ~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  145 (393)
T d1sq9a_          66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK  145 (393)
T ss_dssp             EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred             eeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCC
Confidence            2      2222 2346789999999999997654332111          124556888888875     4689999999


Q ss_pred             CcEEEEECCCCc-----------e-------eEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE---
Q 006220          485 RTARIWSMDRIQ-----------P-------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF---  543 (656)
Q Consensus       485 g~i~lwd~~~~~-----------~-------~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~---  543 (656)
                      |++++|++....           .       ......+...+.+++|+|++ +|++|+.||+|++||+.+++++..+   
T Consensus       146 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~  224 (393)
T d1sq9a_         146 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ  224 (393)
T ss_dssp             SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred             CcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccc
Confidence            999999974221           0       11112455668999999997 8999999999999999999887654   


Q ss_pred             ---ecCCCCeEEEEEcCCCCEEEEEECCCc---EEEEeCCCCeeeEeee-------------CCCccEEEEEEcCCCCEE
Q 006220          544 ---IGHRSMILSLAMSPDGRYMASGDEDGT---IMMWDLASGRCVTPLM-------------GHTSCVWTLAYSCEGSLL  604 (656)
Q Consensus       544 ---~~h~~~i~~l~~sp~g~~L~s~~~dg~---I~iwD~~~~~~~~~~~-------------~h~~~V~~l~~s~~~~~l  604 (656)
                         .+|..+|.+++|+|+|++|++|+.|++   |++||+.+++++..+.             +|.+.|++++|+|++++|
T Consensus       225 ~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l  304 (393)
T d1sq9a_         225 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  304 (393)
T ss_dssp             C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             cccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee
Confidence               468899999999999999999999874   9999999998887763             799999999999999999


Q ss_pred             EEEECCCcEEEEeCCCCCceeecc
Q 006220          605 ASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       605 ~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      +|||.|++|+|||+.+++.+....
T Consensus       305 ~S~s~D~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         305 CSAGWDGKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCEEEEEECCCCCEEEEEC
Confidence            999999999999999998776653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.9e-29  Score=249.93  Aligned_cols=263  Identities=16%  Similarity=0.223  Sum_probs=181.6

Q ss_pred             eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc--cCCCCCCCCCCccccC--CCCCceee-EEe
Q 006220          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSS--GLQGENDTTPREDIIG--PNGRKRSY-TLY  417 (656)
Q Consensus       343 ~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~-~~l  417 (656)
                      ...++.+|.++|+|++|+|    |++|+.||.|++||+..........  ....    .....+..  .+...+.. ...
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~----~~~~~~~s~s~D~~v~~w~~~~   76 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDN----SKAQEYSSISWDDTLKVNGITK   76 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEEC----CSTTCCEEEETTTEEEETTEEE
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEe----cCCCeEEEEeeccccccccccc
Confidence            4567899999999999987    9999999999999976421100000  0000    00000000  00000000 000


Q ss_pred             ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC-cEEEEECCCCc
Q 006220          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-TARIWSMDRIQ  496 (656)
Q Consensus       418 ~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg-~i~lwd~~~~~  496 (656)
                      ..+...+.++++++++..+++++ ++.+.+|+..++..+..+..+ .+  ..++++++..+++++.++ .+++|++...+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~  152 (287)
T d1pgua2          77 HEFGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLN-SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLE  152 (287)
T ss_dssp             EECSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECS-SC--EEEEEECSSEEEEEETTTSCEEEEETTEEE
T ss_pred             cccccceeeeeeccCCceEEEee-cccceeeeccceeeeeecccc-ce--eeeeeccCcceeeeccccceeeeeeccccc
Confidence            11222344444444444333332 233445554444444444432 22  345677888888888775 79999998766


Q ss_pred             eeEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEE-EEecCCCCeEEEEEcCC----------CCEEEE
Q 006220          497 PLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPD----------GRYMAS  564 (656)
Q Consensus       497 ~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~-~~~~h~~~i~~l~~sp~----------g~~L~s  564 (656)
                      ....+. .|...+++++|+|++.+|++|+.||.|++||+.++.... .+.+|..+|.+++|+|.          +.+|++
T Consensus       153 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~s  232 (287)
T d1pgua2         153 VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT  232 (287)
T ss_dssp             EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEE
T ss_pred             eeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEe
Confidence            555544 577889999999999999999999999999999988765 46789999999999874          468999


Q ss_pred             EECCCcEEEEeCCC-CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          565 GDEDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       565 ~~~dg~I~iwD~~~-~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      |+.|+.|+|||+.+ ++.+..+.+|.+.|++++|+|++ .|++++.||+|++|++
T Consensus       233 gs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99999999999976 56677778999999999999986 6899999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-27  Score=235.16  Aligned_cols=263  Identities=28%  Similarity=0.527  Sum_probs=214.7

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      +..+..+|+|++|  ||++||+|+.||.|+|||+.+                            ......+.+|.++|++
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~----------------------------~~~~~~l~~H~~~V~~   60 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT----------------------------LECKRILTGHTGSVLC   60 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS----------------------------CCEEEEECCCSSCEEE
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCC----------------------------CcEEEEEecCCCCEee
Confidence            4567788999765  799999999999999999875                            3456678899999999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce---eEEecC
Q 006220          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAG  503 (656)
Q Consensus       427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~---~~~~~~  503 (656)
                      ++|  ++++|++|+.||+|++|++..+........+....  ..+.+....+++++.++.+.+|+......   ...+..
T Consensus        61 v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (293)
T d1p22a2          61 LQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG  136 (293)
T ss_dssp             EEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred             eec--ccceeeccccccccccccccccccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccc
Confidence            987  57899999999999999999888877766554443  44556677899999999999999886553   445567


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~  583 (656)
                      |...+.++.+.+  ..+++++.|+.|++||+++++++..+.++...+..+.++  +.++++++.||.|++||++++..+.
T Consensus       137 ~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~  212 (293)
T d1p22a2         137 HRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR  212 (293)
T ss_dssp             CSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cccccccceecc--cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeee
Confidence            888888877754  578899999999999999999999999999999888776  5789999999999999999999999


Q ss_pred             eeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEc
Q 006220          584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVL  655 (656)
Q Consensus       584 ~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ft  655 (656)
                      ...+|...+..  +++++.+|++|+.||.|++||+........      ......+..+..|..+|.+|+|.
T Consensus       213 ~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~------~~~~~~~~~~~~H~~~V~~v~~d  276 (293)
T d1p22a2         213 VLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRA------PAGTLCLRTLVEHSGRVFRLQFD  276 (293)
T ss_dssp             EECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTS------CTTTTEEEEECCCSSCCCCEEEC
T ss_pred             eecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccc------cCCceeeEEecCCCCCEEEEEEc
Confidence            99999888865  456788999999999999999865433211      11123455667788888888874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.3e-27  Score=242.44  Aligned_cols=280  Identities=19%  Similarity=0.341  Sum_probs=212.7

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCC-------------
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE-------------  395 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~-------------  395 (656)
                      ...+++|+... ..+..++.+|.+.|+|++|+|+ .+|++|+.||.|++|++...............             
T Consensus        32 Dg~i~vWd~~~-~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (355)
T d1nexb2          32 DKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK  109 (355)
T ss_dssp             TTEEEEEETTT-TEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEE
T ss_pred             CCeEEEEECCC-CcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccc
Confidence            45788997654 3456788899999999999986 58999999999999998764322111100000             


Q ss_pred             ------CCC-------CC-------------CccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEe
Q 006220          396 ------NDT-------TP-------------REDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWS  449 (656)
Q Consensus       396 ------~~~-------~~-------------~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd  449 (656)
                            .+.       ..             ...................|...|.+  +.++++.+++++.|+.|++||
T Consensus       110 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~d~~i~~~d  187 (355)
T d1nexb2         110 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWD  187 (355)
T ss_dssp             EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE--EEEETTEEEEEETTSCEEEEE
T ss_pred             eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc--cccccceeeeecccceeeeee
Confidence                  000       00             00000001111122333445555544  445688999999999999999


Q ss_pred             ccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcE
Q 006220          450 TKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV  529 (656)
Q Consensus       450 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V  529 (656)
                      +.+++.+....++...+.++.|+|++.++++++.|++|++||++++..+..+.+|...|.+++|++  ++|++|+.||.|
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i  265 (355)
T d1nexb2         188 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSI  265 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEE
T ss_pred             cccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeeccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999864  699999999999


Q ss_pred             EEEeCCCCeeEEEEecCCCCeEEE-EEcCCCCEEEEEECCCcEEEEeCCCCeeeE-eeeCCCccEEEEEEcCCCCEEEEE
Q 006220          530 RLWDVSSGECVRIFIGHRSMILSL-AMSPDGRYMASGDEDGTIMMWDLASGRCVT-PLMGHTSCVWTLAYSCEGSLLASG  607 (656)
Q Consensus       530 ~iwd~~~~~~~~~~~~h~~~i~~l-~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~sg  607 (656)
                      ++||++++...  +..|...+.++ .+++++.+|++| .||.|+|||+++++++. .+.+|.+.|++++|+|+ .+++++
T Consensus       266 ~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~  341 (355)
T d1nexb2         266 RGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAV  341 (355)
T ss_dssp             EEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEE
T ss_pred             cccccccccee--cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEE
Confidence            99999987654  44566666555 456777777666 48999999999999885 46789999999999987 478889


Q ss_pred             ECCCcEEEEeC
Q 006220          608 SADCTVKLWDV  618 (656)
Q Consensus       608 s~Dg~I~iWd~  618 (656)
                      +.||.++||.+
T Consensus       342 s~dg~~~l~~~  352 (355)
T d1nexb2         342 EKDGQSFLEIL  352 (355)
T ss_dssp             ESSSCEEEEEE
T ss_pred             ECCCcEEEEEE
Confidence            99998766543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.7e-27  Score=240.06  Aligned_cols=256  Identities=12%  Similarity=0.036  Sum_probs=197.0

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      ..+|.+.|++++|+|++++||+|+.||+|+|||+.....                         ........+|.++|.+
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-------------------------~~~~~~~~~h~~~V~~   61 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-------------------------NVDLLQSLRYKHPLLC   61 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-------------------------EEEEEEEEECSSCEEE
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc-------------------------ceEEEEecCCCCCEEE
Confidence            356788999999999999999999999999999874211                         2233445579999999


Q ss_pred             EEEccCC-CEEEEEeCCCeEEEEeccCCceeEEeeCCCc-cEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE----E
Q 006220          427 ASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR----I  500 (656)
Q Consensus       427 l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~----~  500 (656)
                      ++|+|++ .+|++|+.||+|++|++...........+.. ......+.+++..+++++.++++++||++......    .
T Consensus        62 v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~  141 (342)
T d1yfqa_          62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN  141 (342)
T ss_dssp             EEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred             EEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecc
Confidence            9999875 4789999999999999998877776665443 34455667788999999999999999986543322    2


Q ss_pred             ecCC--CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeE---EEEecCCCCeEEEEEcC-CCCEEEEEECCCcEEEE
Q 006220          501 MAGH--LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV---RIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMW  574 (656)
Q Consensus       501 ~~~~--~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~---~~~~~h~~~i~~l~~sp-~g~~L~s~~~dg~I~iw  574 (656)
                      ...+  ......+.+.+.+..+++++.|+.|++||++.+...   .....+...+.+..+.+ ++..+++++.||.+.+|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~  221 (342)
T d1yfqa_         142 LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             SCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred             cccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEE
Confidence            2222  233456677888999999999999999999876543   22334445566666555 67899999999999999


Q ss_pred             eCCCCeee---------E------eeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          575 DLASGRCV---------T------PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       575 D~~~~~~~---------~------~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      ++......         .      ...+|...|++++|+|++.+|+||+.||.|++||+.+++.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             EecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence            98643211         1      11356678999999999999999999999999999998766543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-26  Score=234.77  Aligned_cols=281  Identities=22%  Similarity=0.433  Sum_probs=212.1

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCC---CCC----
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDT---TPR----  401 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~---~~~----  401 (656)
                      ...+++|+.... .+..++.+|.+.|.+++|+++  +|++|+.|+.+++|+...................   ...    
T Consensus        36 Dg~i~vWd~~~~-~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (342)
T d2ovrb2          36 DNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS  112 (342)
T ss_dssp             TSCEEEEETTTC-CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCC-CEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccc
Confidence            457899986543 456678899999999999875  9999999999999998754322111100000000   000    


Q ss_pred             ----cc-ccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC
Q 006220          402 ----ED-IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH  476 (656)
Q Consensus       402 ----~~-~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~  476 (656)
                          .. .............+..+....  ..+.+....+++++.|+.|++||......+..+.+|...+..+.  +++.
T Consensus       113 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~  188 (342)
T d2ovrb2         113 GSRDATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGI  188 (342)
T ss_dssp             EETTSEEEEEESSSCCEEEEEECCSSCE--EEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSS
T ss_pred             cccceeEEEeecccccceeeeecccccc--eeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCC
Confidence                00 000000111122222222222  23445567899999999999999999999999999887766554  4788


Q ss_pred             EEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec---CCCCeEEE
Q 006220          477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSL  553 (656)
Q Consensus       477 ~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~---h~~~i~~l  553 (656)
                      ++++|+.||+|++||++..+++..+.+|...+.++++++  ++|++|+.||.|++||+...+....+.+   |...+.++
T Consensus       189 ~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  266 (342)
T d2ovrb2         189 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL  266 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE
T ss_pred             EEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeec
Confidence            999999999999999999999999999999999888765  6999999999999999999988888765   44566666


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-----CCCccEEEEEEcCCCCEEEEEECCCc----EEEEeCCC
Q 006220          554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-----GHTSCVWTLAYSCEGSLLASGSADCT----VKLWDVTT  620 (656)
Q Consensus       554 ~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-----~h~~~V~~l~~s~~~~~l~sgs~Dg~----I~iWd~~~  620 (656)
                      .++  ++++++|+.||.|++||+++++++..+.     +|.+.|++++|+|++.+|++|+.||+    |++||+..
T Consensus       267 ~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         267 QFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            665  6799999999999999999999988774     57788999999999999999999986    99999865

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.2e-26  Score=243.81  Aligned_cols=261  Identities=16%  Similarity=0.232  Sum_probs=190.9

Q ss_pred             ccceecCCCC-----CCceeEEEEeeCCCCeEEEEE------c-CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCC
Q 006220          329 RNRVHLSSAA-----LPSVSFYTFINTHNGLNCASI------S-QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN  396 (656)
Q Consensus       329 ~~~v~l~~~~-----~ps~~~~~~~~~~~~V~~l~f------s-~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~  396 (656)
                      ...+++|+..     .|.........+..++..+..      + .++.++++++.||.|++|++............    
T Consensus        33 D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~----  108 (393)
T d1sq9a_          33 DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE----  108 (393)
T ss_dssp             TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE----
T ss_pred             CCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeecc----
Confidence            3466777532     222233334444444433332      1 13457889999999999998653221110000    


Q ss_pred             CCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC-----CEEEEEeCCCeEEEEeccCCce----------------
Q 006220          397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG-----DFILSSSADTTIRLWSTKLNAN----------------  455 (656)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~-----~~L~s~s~Dg~I~lwd~~~~~~----------------  455 (656)
                                    .........+...+..++|.+++     .++++++.||+|++|++.....                
T Consensus       109 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  174 (393)
T d1sq9a_         109 --------------KLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ  174 (393)
T ss_dssp             --------------EECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEE
T ss_pred             --------------ccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecc
Confidence                          00001112355677888887753     5789999999999999753211                


Q ss_pred             --eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe------cCCCCCeeEEEEcCCCCEEEEEECCC
Q 006220          456 --LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM------AGHLSDVDCVRWHINCNYIATGSSDK  527 (656)
Q Consensus       456 --~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~------~~~~~~V~~v~~~p~~~~l~tgs~dg  527 (656)
                        ......+...+.+++|+|++ +|++|+.||+|++||+.+++++..+      .+|...|.+++|+|+|++|++|+.|+
T Consensus       175 ~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~  253 (393)
T d1sq9a_         175 GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN  253 (393)
T ss_dssp             EEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred             cceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCC
Confidence              11112345668899999987 8999999999999999998877654      46889999999999999999999987


Q ss_pred             c---EEEEeCCCCeeEEEEe-------------cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCcc
Q 006220          528 T---VRLWDVSSGECVRIFI-------------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC  591 (656)
Q Consensus       528 ~---V~iwd~~~~~~~~~~~-------------~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~  591 (656)
                      +   |++||+.+++++..+.             +|.+.|++++|+|+|++|++|+.||+|+|||+.+++++..+.+|.+.
T Consensus       254 t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~  333 (393)
T d1sq9a_         254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD  333 (393)
T ss_dssp             TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGG
T ss_pred             CcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCc
Confidence            5   9999999998887764             79999999999999999999999999999999999999999999877


Q ss_pred             EE----EEEEcCCCCEEEEEE
Q 006220          592 VW----TLAYSCEGSLLASGS  608 (656)
Q Consensus       592 V~----~l~~s~~~~~l~sgs  608 (656)
                      |.    .++|++++..+++++
T Consensus       334 v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         334 IEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             CSSGGGCCCBCTTSCBCSSCC
T ss_pred             ccCCccEEEECCCCCEEEEcc
Confidence            65    467788777666443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.8e-25  Score=218.06  Aligned_cols=248  Identities=26%  Similarity=0.528  Sum_probs=201.9

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+.... .+..++.+|.+.|+|++|  ++++|++|+.||.|++|++....                        
T Consensus        34 Dg~i~vWd~~~~-~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~------------------------   86 (293)
T d1p22a2          34 DNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE------------------------   86 (293)
T ss_dssp             SSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC------------------------
T ss_pred             CCeEEEEECCCC-cEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc------------------------
Confidence            457889976543 355678889999999987  67899999999999999987522                        


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce---eEEeeCCCccEEEEEEecCCCEEEEEECCC
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg  485 (656)
                          .......+...  ...+.+....++++..++.+++|+......   ...+..|...|..+.+.  ...+++++.|+
T Consensus        87 ----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~  158 (293)
T d1p22a2          87 ----MLNTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR  158 (293)
T ss_dssp             ----EEEEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred             ----ccccccccccc--cccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCC
Confidence                11112222222  234555677899999999999999887654   34456788888877776  45788999999


Q ss_pred             cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~  565 (656)
                      .+++||+++.+.+..+.++...+..+.++  +.++++++.||+|++||++++..+..+.+|...+.+  +++++.+|++|
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg  234 (293)
T d1p22a2         159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSG  234 (293)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEE
T ss_pred             ceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEE
Confidence            99999999999999999999888888775  568999999999999999999999999999888865  56678999999


Q ss_pred             ECCCcEEEEeCCC---------CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220          566 DEDGTIMMWDLAS---------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (656)
Q Consensus       566 ~~dg~I~iwD~~~---------~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd  617 (656)
                      +.||.|++||+..         ..++..+.+|.+.|++++|+  +.+|+|||.||+|+|||
T Consensus       235 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             cCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            9999999999743         34677888999999999995  56899999999999998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=2.5e-25  Score=230.06  Aligned_cols=260  Identities=9%  Similarity=0.049  Sum_probs=201.7

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDS--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg--~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (656)
                      +..+++|+.....+.   ...|...|.+++|||||++|++++.+.  .|++||+.+                        
T Consensus        23 ~g~v~v~d~~~~~~~---~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~------------------------   75 (360)
T d1k32a3          23 RGQAFIQDVSGTYVL---KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT------------------------   75 (360)
T ss_dssp             TTEEEEECTTSSBEE---ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT------------------------
T ss_pred             CCeEEEEECCCCcEE---EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC------------------------
Confidence            457788876544332   246888999999999999998766553  799999874                        


Q ss_pred             CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE----
Q 006220          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----  482 (656)
Q Consensus       407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs----  482 (656)
                           .....+..|.+.|.+++|+|++++|++++.++.+++|++.++.....+..|...+.+++|+|+|.+|+.++    
T Consensus        76 -----~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~  150 (360)
T d1k32a3          76 -----GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH  150 (360)
T ss_dssp             -----CCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECS
T ss_pred             -----CcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccc
Confidence                 13345678999999999999999999999999999999999999999999999999999999999998654    


Q ss_pred             ------CCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-------EEEEecC---
Q 006220          483 ------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-------VRIFIGH---  546 (656)
Q Consensus       483 ------~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-------~~~~~~h---  546 (656)
                            .++.+++|++.+++.... ..+...+.+++|+|+|++|++++.++.+++||......       ......|   
T Consensus       151 ~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  229 (360)
T d1k32a3         151 GETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS  229 (360)
T ss_dssp             STTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred             cceeeccccceeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCc
Confidence                  345699999988765544 45667889999999999999999999999998754321       1111111   


Q ss_pred             ---------------------------------CCCeEEEEEcCCCC-------------EEEEEECCCcEEEEeCCCCe
Q 006220          547 ---------------------------------RSMILSLAMSPDGR-------------YMASGDEDGTIMMWDLASGR  580 (656)
Q Consensus       547 ---------------------------------~~~i~~l~~sp~g~-------------~L~s~~~dg~I~iwD~~~~~  580 (656)
                                                       .+....+...+++.             ++++++.++.|++||+.+++
T Consensus       230 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  309 (360)
T d1k32a3         230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK  309 (360)
T ss_dssp             CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred             cccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe
Confidence                                             11222333333222             34555678899999998876


Q ss_pred             eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       581 ~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      ..    .|.+.|.+++|||||++|++++.||.|++||+.+++...
T Consensus       310 ~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~  350 (360)
T d1k32a3         310 VT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER  350 (360)
T ss_dssp             EE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCE
T ss_pred             EE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcce
Confidence            43    344569999999999999999999999999999876543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.5e-24  Score=218.24  Aligned_cols=221  Identities=22%  Similarity=0.319  Sum_probs=170.4

Q ss_pred             ceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEE
Q 006220          411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW  490 (656)
Q Consensus       411 ~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lw  490 (656)
                      .+.++.+.||.++|++++|+|    |+||+.||+|++||+.++     ..+|...|.++.++++ ..+++++.|+++++|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w   72 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVN   72 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEET
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeeccccccc
Confidence            456788999999999999987    999999999999998753     3579999999999865 467899999999999


Q ss_pred             ECCCCc-----------------------eeEEecCCC--------CCeeEEEEcCCCCEEEEEECCC-cEEEEeCCCCe
Q 006220          491 SMDRIQ-----------------------PLRIMAGHL--------SDVDCVRWHINCNYIATGSSDK-TVRLWDVSSGE  538 (656)
Q Consensus       491 d~~~~~-----------------------~~~~~~~~~--------~~V~~v~~~p~~~~l~tgs~dg-~V~iwd~~~~~  538 (656)
                      ++...+                       .+..+....        ....+.++++++..+++++.++ .|++|++....
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~  152 (287)
T d1pgua2          73 GITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE  152 (287)
T ss_dssp             TEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEE
T ss_pred             cccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccc
Confidence            764211                       001111111        1123456677888888888775 79999998766


Q ss_pred             eEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEe-eeCCCccEEEEEEcCC----------CCEEEE
Q 006220          539 CVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP-LMGHTSCVWTLAYSCE----------GSLLAS  606 (656)
Q Consensus       539 ~~~~~~-~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~-~~~h~~~V~~l~~s~~----------~~~l~s  606 (656)
                      ....+. .|.+++++++|+|+|.+|++|+.||.|++||+.++..... +.+|...|.+++|+|.          +.+|++
T Consensus       153 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~s  232 (287)
T d1pgua2         153 VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT  232 (287)
T ss_dssp             EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEE
T ss_pred             eeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEe
Confidence            655543 4778999999999999999999999999999999887654 6789999999999874          468999


Q ss_pred             EECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEc
Q 006220          607 GSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVL  655 (656)
Q Consensus       607 gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ft  655 (656)
                      |+.|++|+|||+.++...              +..+..|..+|.+|.|+
T Consensus       233 gs~D~~i~iw~~~~~~~~--------------~~~~~~h~~~V~~v~~~  267 (287)
T d1pgua2         233 GSLDTNIFIYSVKRPMKI--------------IKALNAHKDGVNNLLWE  267 (287)
T ss_dssp             EETTSCEEEEESSCTTCC--------------EEETTSSTTCEEEEEEE
T ss_pred             ecCCCeEEEEECCCCCeE--------------EEEeCCCCCCeEEEEEC
Confidence            999999999999764432              22334455566666654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.9e-23  Score=212.22  Aligned_cols=264  Identities=11%  Similarity=0.074  Sum_probs=196.2

Q ss_pred             ccceecCCCCC--CceeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220          329 RNRVHLSSAAL--PSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (656)
Q Consensus       329 ~~~v~l~~~~~--ps~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (656)
                      ...+++|+...  ....+....+|.+.|+|++|+|+ +.+|++|+.||.|++|++.....                    
T Consensus        32 Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~--------------------   91 (342)
T d1yfqa_          32 DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS--------------------   91 (342)
T ss_dssp             TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS--------------------
T ss_pred             CCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccc--------------------
Confidence            45788886533  34445566689999999999986 56899999999999999875221                    


Q ss_pred             CCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe----eCC--CccEEEEEEecCCCEEE
Q 006220          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY----KGH--NYPVWDVQFNPQGHYFA  479 (656)
Q Consensus       406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~----~~h--~~~V~~l~~sp~~~~l~  479 (656)
                             .......+........+.+++..+++++.++++++||++.+......    ..+  ......+.+.+.+..++
T Consensus        92 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (342)
T d1yfqa_          92 -------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI  164 (342)
T ss_dssp             -------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred             -------cccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence                   11112233344456667778889999999999999998755433222    222  33455677888999999


Q ss_pred             EEECCCcEEEEECCCCcee---EEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeE------EE-------
Q 006220          480 SSSHDRTARIWSMDRIQPL---RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECV------RI-------  542 (656)
Q Consensus       480 sgs~Dg~i~lwd~~~~~~~---~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~------~~-------  542 (656)
                      +++.||.|++|++......   .....+...+.+..+.+ ++..+++++.||.+.+|+.......      ..       
T Consensus       165 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
T d1yfqa_         165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN  244 (342)
T ss_dssp             EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred             eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec
Confidence            9999999999999765543   23334555666666654 6788999999999999998643211      11       


Q ss_pred             --EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          543 --FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       543 --~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                        ..+|...+++++|+|++++|++|+.||.|++||+.+++++..+..+. .+..++|+|+++++++++.|+++++|....
T Consensus       245 ~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred             cCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence              13566789999999999999999999999999999999998886432 345577888899999999999988887543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=8.3e-23  Score=210.87  Aligned_cols=190  Identities=10%  Similarity=0.034  Sum_probs=162.2

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCC
Q 006220          356 CASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (656)
Q Consensus       356 ~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~  434 (656)
                      .-.||| ||+++|+++ +|.|.+|++...                             .... .+|.+.|.+++|+|||+
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~-----------------------------~~~~-~~~~~~v~~~~~spDg~   55 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGT-----------------------------YVLK-VPEPLRIRYVRRGGDTK   55 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSS-----------------------------BEEE-CSCCSCEEEEEECSSSE
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCC-----------------------------cEEE-ccCCCCEEEEEECCCCC
Confidence            457999 999999985 689999998641                             1122 36999999999999999


Q ss_pred             EEEEEeCCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEE
Q 006220          435 FILSSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (656)
Q Consensus       435 ~L~s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~  512 (656)
                      +|++++.+.  .|++||..++.. ..+..|...|.+++|+|+|+++++++.++.+++|+..+++....+..|...+.+++
T Consensus        56 ~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (360)
T d1k32a3          56 VAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT  134 (360)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchh
Confidence            998776553  799999987654 45678999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEE----------CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          513 WHINCNYIATGS----------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (656)
Q Consensus       513 ~~p~~~~l~tgs----------~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~  578 (656)
                      |+|+|++|+.++          .++.+++||+.+++.... ..|...+.+++|+|+|++|++++.++.+.+||...
T Consensus       135 ~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         135 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             hccceeeeeeeccccccceeeccccceeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEcccccc
Confidence            999999998654          345699999998876654 45677889999999999999999999999998643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=1.3e-21  Score=209.18  Aligned_cols=274  Identities=10%  Similarity=0.049  Sum_probs=192.5

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+++|+...... ..++ ..+..+..++|||||++|++++.||.|++||+.+.....                     
T Consensus        41 dg~v~vwD~~t~~~-~~~l-~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~---------------------   97 (426)
T d1hzua2          41 AGQIALVDGDSKKI-VKVI-DTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK---------------------   97 (426)
T ss_dssp             TTEEEEEETTTCSE-EEEE-ECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE---------------------
T ss_pred             CCEEEEEECCCCcE-EEEE-eCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE---------------------
Confidence            46888898765433 3344 344679999999999999999999999999998632211                     


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEE-----------ecCCC
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF-----------NPQGH  476 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~-----------sp~~~  476 (656)
                        ...+....+|.+.+.+++|+|||++++ ++..++++++||..++..+.....|...+..+.+           ++++.
T Consensus        98 --~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~  175 (426)
T d1hzua2          98 --VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP  175 (426)
T ss_dssp             --EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred             --EEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCC
Confidence              112233446778888999999999875 5558899999999999988887766555544444           44444


Q ss_pred             EEEEEEC-CCcEEEEECCCCcee-EEecCCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCe---------------
Q 006220          477 YFASSSH-DRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGE---------------  538 (656)
Q Consensus       477 ~l~sgs~-Dg~i~lwd~~~~~~~-~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~~~---------------  538 (656)
                      .++.... .+.+.+++....... ....++...+..+.|+|++++++++.. +..+.+|+..+++               
T Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (426)
T d1hzua2         176 EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR  255 (426)
T ss_dssp             EEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSC
T ss_pred             EEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccc
Confidence            4443332 234444444433322 222356677888999999988777653 3445556554333               


Q ss_pred             ---------------------------------------eEEEEecCCCCeEEEEEcCCCCEEEE-------EECCCcEE
Q 006220          539 ---------------------------------------CVRIFIGHRSMILSLAMSPDGRYMAS-------GDEDGTIM  572 (656)
Q Consensus       539 ---------------------------------------~~~~~~~h~~~i~~l~~sp~g~~L~s-------~~~dg~I~  572 (656)
                                                             ....+.+|...+..++|+|+|++|++       ++.|++|+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~  335 (426)
T d1hzua2         256 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA  335 (426)
T ss_dssp             CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEE
T ss_pred             eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEE
Confidence                                                   33445577888899999999999995       45678999


Q ss_pred             EEeCCCCeeeEeee---------CCCccEEEEEEcCCCCEEEE-E----ECCCcEEEEeCCCCCceeec
Q 006220          573 MWDLASGRCVTPLM---------GHTSCVWTLAYSCEGSLLAS-G----SADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       573 iwD~~~~~~~~~~~---------~h~~~V~~l~~s~~~~~l~s-g----s~Dg~I~iWd~~~~~~~~~~  627 (656)
                      |||+.+++...++.         .|...|.+++|||||++++. +    +.+|.|+|||..+.+.....
T Consensus       336 vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i  404 (426)
T d1hzua2         336 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV  404 (426)
T ss_dssp             EEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEE
Confidence            99999988766542         45667999999999997743 3    35788999999998765443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=6.3e-20  Score=184.10  Aligned_cols=264  Identities=15%  Similarity=0.132  Sum_probs=205.1

Q ss_pred             cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       330 ~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      +.+.+|+.....+.  ........+..++|||||++|+ +++.++.|++||+.+                          
T Consensus        12 ~~v~v~D~~t~~~~--~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t--------------------------   63 (301)
T d1l0qa2          12 DNISVIDVTSNKVT--ATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT--------------------------   63 (301)
T ss_dssp             TEEEEEETTTTEEE--EEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT--------------------------
T ss_pred             CEEEEEECCCCeEE--EEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC--------------------------
Confidence            45677776554332  2334556789999999999875 666789999999875                          


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE-ECCCc
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRT  486 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~Dg~  486 (656)
                        ......+..|. .+..+.|++++..++ ++..++.+.+|+..+++....+..+. ...++.|+|++..++.+ ..++.
T Consensus        64 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~  139 (301)
T d1l0qa2          64 --NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKT  139 (301)
T ss_dssp             --TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred             --Cceeeeeeccc-cccccccccccccccccccccceeeecccccceeeeeccccc-cceEEEeecCCCeeeeeeccccc
Confidence              22334444454 468899999998654 56677899999999988888877554 56789999999987554 56888


Q ss_pred             EEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC-CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~  565 (656)
                      +.+|+..+...+..+..+ ..+.+++++|++.++++++.+ +.+.+|+............+ ..+..++|+++|..++.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~  217 (301)
T d1l0qa2         140 VSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVT  217 (301)
T ss_dssp             EEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEE
T ss_pred             eeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccc
Confidence            999999999888887754 568899999999999888765 56778888777777766644 557789999999988766


Q ss_pred             EC---CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEE-EEEECCCcEEEEeCCCCCceeecc
Q 006220          566 DE---DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL-ASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       566 ~~---dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      +.   ++.|.+||+.+++.+..+..+ ..+.+++|+|||++| ++++.|+.|++||+.+++.+...+
T Consensus       218 ~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         218 NVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            43   468999999999998887654 457999999999976 577789999999999987765543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=2.1e-20  Score=190.45  Aligned_cols=232  Identities=12%  Similarity=0.132  Sum_probs=183.3

Q ss_pred             CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee--cCccCEEEEEEccCCCEE-EEEe
Q 006220          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ--GHSGPVYSASFSPLGDFI-LSSS  440 (656)
Q Consensus       364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~spd~~~L-~s~s  440 (656)
                      .|+++++.|+.|+|||+.+.                            .....+.  .+...+.+++|+|||+++ ++++
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~----------------------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~   53 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM----------------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVN   53 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT----------------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEET
T ss_pred             eEEEEEcCCCEEEEEECCCC----------------------------eEEEEEECCCCCCCccEEEECCCCCEEEEEEC
Confidence            48999999999999999752                            2222232  344567889999999987 5677


Q ss_pred             CCCeEEEEeccCCceeEEeeCCC-----ccEEEEEEecCCCEEEEEE------------CCCcEEEEECCCCceeEEecC
Q 006220          441 ADTTIRLWSTKLNANLVCYKGHN-----YPVWDVQFNPQGHYFASSS------------HDRTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~-----~~V~~l~~sp~~~~l~sgs------------~Dg~i~lwd~~~~~~~~~~~~  503 (656)
                      .++.|.+||+.+++.+..+..+.     ..+..++|+|++.++++++            .++.+.+||..+......+..
T Consensus        54 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  133 (337)
T d1pbyb_          54 KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc
Confidence            89999999999999988877653     3356799999999998876            467899999999988888774


Q ss_pred             CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe---------------------------------------
Q 006220          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI---------------------------------------  544 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~---------------------------------------  544 (656)
                      + ..+.+++|+|+|.++++++.  .+.+||..+++....+.                                       
T Consensus       134 ~-~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (337)
T d1pbyb_         134 P-RQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID  210 (337)
T ss_dssp             C-SSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred             c-CCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccc
Confidence            4 66889999999999999864  46778877665443321                                       


Q ss_pred             ---------------------------cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEE
Q 006220          545 ---------------------------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY  597 (656)
Q Consensus       545 ---------------------------~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~  597 (656)
                                                 .+...+.++.++|++.+++++  ++.|++||+.+++.+..+. +...+.+++|
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~  287 (337)
T d1pbyb_         211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNV  287 (337)
T ss_dssp             TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEE
T ss_pred             eeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEE
Confidence                                       233345566777888887766  4789999999999998875 4567889999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220          598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       598 s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      +|||++|++++.||+|+|||+.+.+.+.....
T Consensus       288 s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             CTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            99999999999999999999999887765543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=1.2e-20  Score=201.53  Aligned_cols=234  Identities=12%  Similarity=0.072  Sum_probs=167.8

Q ss_pred             CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCC
Q 006220          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT  443 (656)
Q Consensus       364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg  443 (656)
                      -++++.+.||.|+|||+.+                            .+....+..| ..+.+++|||||++|++++.|+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t----------------------------~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~   83 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDS----------------------------KKIVKVIDTG-YAVHISRMSASGRYLLVIGRDA   83 (426)
T ss_dssp             EEEEEETTTTEEEEEETTT----------------------------CSEEEEEECC-SSEEEEEECTTSCEEEEEETTS
T ss_pred             EEEEEEcCCCEEEEEECCC----------------------------CcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCC
Confidence            3557788899999999875                            2344555555 4589999999999999999999


Q ss_pred             eEEEEeccCCceeEEe-----eCCCccEEEEEEecCCCEEEEE-ECCCcEEEEECCCCceeEEecCCCCCeeEEEE----
Q 006220          444 TIRLWSTKLNANLVCY-----KGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW----  513 (656)
Q Consensus       444 ~I~lwd~~~~~~~~~~-----~~h~~~V~~l~~sp~~~~l~sg-s~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~----  513 (656)
                      +|++||+.+++.....     .+|...+.+++|+|+|++++++ ..++++.+||..+..+.....+|...+..+.+    
T Consensus        84 ~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (426)
T d1hzua2          84 RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP  163 (426)
T ss_dssp             EEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred             CEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCC
Confidence            9999999988764332     2456667788889999987555 58899999999999988887766655544444    


Q ss_pred             -------cCCCCEEEEEEC-CCcEEEEeCCCCee-EEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCC----
Q 006220          514 -------HINCNYIATGSS-DKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG----  579 (656)
Q Consensus       514 -------~p~~~~l~tgs~-dg~V~iwd~~~~~~-~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~----  579 (656)
                             ++++..++.... .+.+.+++...+.. .....++...+..+.|+|+|++++++. .+..+.+|+..++    
T Consensus       164 ~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~  243 (426)
T d1hzua2         164 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA  243 (426)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEE
Confidence                   444444443332 23444454444332 223345677788999999999877765 3344555554432    


Q ss_pred             --------------------------------------------------eeeEeeeCCCccEEEEEEcCCCCEEEE---
Q 006220          580 --------------------------------------------------RCVTPLMGHTSCVWTLAYSCEGSLLAS---  606 (656)
Q Consensus       580 --------------------------------------------------~~~~~~~~h~~~V~~l~~s~~~~~l~s---  606 (656)
                                                                        +....+.+|...+.+++|+|++++|++   
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~  323 (426)
T d1hzua2         244 LVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT  323 (426)
T ss_dssp             EEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCT
T ss_pred             EeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeec
Confidence                                                              334455677888899999999999994   


Q ss_pred             ----EECCCcEEEEeCCCCCceee
Q 006220          607 ----GSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       607 ----gs~Dg~I~iWd~~~~~~~~~  626 (656)
                          ++.|++|+|||+.+++....
T Consensus       324 ~~~s~~~~~tv~vwd~~t~~~~~~  347 (426)
T d1hzua2         324 FNPDARISQSVAVFDLKNLDAKYQ  347 (426)
T ss_dssp             TCSSHHHHTCEEEEETTCTTSCCE
T ss_pred             CCCCcccCCEEEEEECCCCCcCeE
Confidence                55678999999999876544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=6.8e-20  Score=187.37  Aligned_cols=244  Identities=12%  Similarity=0.069  Sum_probs=174.2

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee-cCccCEEEEEEccCCCE
Q 006220          357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSGPVYSASFSPLGDF  435 (656)
Q Consensus       357 l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~spd~~~  435 (656)
                      ++|++++++|++++.++.|.|||+.+                            .+....+. .|...+.+++|+|||++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t----------------------------~~~~~t~~~~~~~~p~~l~~spDG~~   53 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVAS----------------------------DTVYKSCVMPDKFGPGTAMMAPDNRT   53 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTT----------------------------TEEEEEEECSSCCSSCEEEECTTSSE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCC----------------------------CCEEEEEEcCCCCCcceEEECCCCCE
Confidence            46899999999999999999999985                            23334443 45666789999999998


Q ss_pred             E-EEEeCCCeEEEEeccCCceeEEeeCCC------ccEEEEEEecCCCEEEEEE------------CCCcEEEEECCCCc
Q 006220          436 I-LSSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSS------------HDRTARIWSMDRIQ  496 (656)
Q Consensus       436 L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~l~~sp~~~~l~sgs------------~Dg~i~lwd~~~~~  496 (656)
                      + ++++.++.|.+||+.+++.+..+....      ..+..++|+|+|.++++++            .++.+.+|+..+++
T Consensus        54 l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~  133 (346)
T d1jmxb_          54 AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  133 (346)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             EEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccce
Confidence            6 566688999999999998877665422      2456899999999988775            46788999887654


Q ss_pred             eeEEecC--CCCCeeEEEEcCCCCEEEEE---------------------------------------------------
Q 006220          497 PLRIMAG--HLSDVDCVRWHINCNYIATG---------------------------------------------------  523 (656)
Q Consensus       497 ~~~~~~~--~~~~V~~v~~~p~~~~l~tg---------------------------------------------------  523 (656)
                      ....+..  ....+..+.+++++..++++                                                   
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (346)
T d1jmxb_         134 EAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI  213 (346)
T ss_dssp             GBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             eeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeee
Confidence            3322211  11223333444443333221                                                   


Q ss_pred             -------------ECCCcEEEEeCCCCeeEE-EEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC
Q 006220          524 -------------SSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT  589 (656)
Q Consensus       524 -------------s~dg~V~iwd~~~~~~~~-~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~  589 (656)
                                   ..++.+.+||..++.... .+..|...+.++.+++++.+++.+.. +.|.+||..+++.+..+. +.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~  291 (346)
T d1jmxb_         214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LD  291 (346)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CS
T ss_pred             eeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CC
Confidence                         122234445554444332 23345666778888888888777654 679999999999888775 34


Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccc
Q 006220          590 SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK  630 (656)
Q Consensus       590 ~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~  630 (656)
                      ..+.+++|+|||++|++++.||.|+|||+.+.+.+......
T Consensus       292 ~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         292 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            56899999999999999999999999999998887665544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=4.7e-19  Score=189.61  Aligned_cols=272  Identities=9%  Similarity=-0.022  Sum_probs=193.2

Q ss_pred             ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (656)
                      ...+.+|+.....+.. ++ .....+..++|||||+++++++.||.|++||+.+.....                     
T Consensus        41 ~g~v~v~D~~t~~v~~-~~-~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~---------------------   97 (432)
T d1qksa2          41 AGQIALIDGSTYEIKT-VL-DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT---------------------   97 (432)
T ss_dssp             TTEEEEEETTTCCEEE-EE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE---------------------
T ss_pred             CCEEEEEECCCCcEEE-EE-eCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE---------------------
Confidence            3467888765544332 33 334579999999999999999999999999987532111                     


Q ss_pred             CCceeeEEeecCccCEEEEEEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCC-----------CccEEEEEEecCCC
Q 006220          409 GRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGH-----------NYPVWDVQFNPQGH  476 (656)
Q Consensus       409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h-----------~~~V~~l~~sp~~~  476 (656)
                        ...+....+|.+.+.+..|+|||++| ++++.+++|++||..+++.+..+..|           ......+.++|+|.
T Consensus        98 --~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  175 (432)
T d1qksa2          98 --VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  175 (432)
T ss_dssp             --EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             --EEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC
Confidence              11223344677788888999999976 67888999999999999988776654           33456788999988


Q ss_pred             EEE-EEECCCcEEEEECCCCceeEEec-CCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeeEEEEe---------
Q 006220          477 YFA-SSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFI---------  544 (656)
Q Consensus       477 ~l~-sgs~Dg~i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~~~~~~~~~---------  544 (656)
                      .++ +.+.++.+.+|+..+.+...... .+...+.+++|+|+|+++++++. ++.+.++|..+++.+..+.         
T Consensus       176 ~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~  255 (432)
T d1qksa2         176 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG  255 (432)
T ss_dssp             EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred             EEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccC
Confidence            764 45567999999998877554433 34567889999999998888775 4578889987766554321         


Q ss_pred             -----------------------------------cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe---------
Q 006220          545 -----------------------------------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR---------  580 (656)
Q Consensus       545 -----------------------------------~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~---------  580 (656)
                                                         .|...+....++|++..+++++.++..++|+..+..         
T Consensus       256 ~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv  335 (432)
T d1qksa2         256 RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSV  335 (432)
T ss_dssp             TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCE
T ss_pred             cccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEE
Confidence                                               122245556677777777777666666666543210         


Q ss_pred             ---------------eeE--------eeeCCCccEEEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCCcee
Q 006220          581 ---------------CVT--------PLMGHTSCVWTLAYSCEGSLLASGS-----ADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       581 ---------------~~~--------~~~~h~~~V~~l~~s~~~~~l~sgs-----~Dg~I~iWd~~~~~~~~  625 (656)
                                     .++        .+..|...|.+++|||||++++.+.     .+|.|.|||..+.+...
T Consensus       336 ~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~  408 (432)
T d1qksa2         336 AVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH  408 (432)
T ss_dssp             EEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             EEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEe
Confidence                           111        1224667899999999999885554     46889999999987643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=2e-18  Score=184.60  Aligned_cols=230  Identities=10%  Similarity=0.022  Sum_probs=171.2

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCC
Q 006220          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD  442 (656)
Q Consensus       363 g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~D  442 (656)
                      .-++++.+.+|.|.|||..+                            .+....+..| ..+..++|||||+++++++.|
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t----------------------------~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~d   82 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGST----------------------------YEIKTVLDTG-YAVHISRLSASGRYLFVIGRD   82 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTT----------------------------CCEEEEEECS-SCEEEEEECTTSCEEEEEETT
T ss_pred             cEEEEEEcCCCEEEEEECCC----------------------------CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCC
Confidence            33457888899999999876                            2344455555 369999999999999999999


Q ss_pred             CeEEEEeccCCceeE--Ee---eCCCccEEEEEEecCCCEE-EEEECCCcEEEEECCCCceeEEecCC-----------C
Q 006220          443 TTIRLWSTKLNANLV--CY---KGHNYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDRIQPLRIMAGH-----------L  505 (656)
Q Consensus       443 g~I~lwd~~~~~~~~--~~---~~h~~~V~~l~~sp~~~~l-~sgs~Dg~i~lwd~~~~~~~~~~~~~-----------~  505 (656)
                      |+|++||+.+++...  .+   .+|.+.+++..|+|||+++ ++++.++++++||..+++++..+..|           .
T Consensus        83 g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~  162 (432)
T d1qksa2          83 GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE  162 (432)
T ss_dssp             SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred             CCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC
Confidence            999999998876432  22   2455667777888999986 67888999999999999988877644           3


Q ss_pred             CCeeEEEEcCCCCEEE-EEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeee
Q 006220          506 SDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLASGRCV  582 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~-tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~g~~L~s~~~-dg~I~iwD~~~~~~~  582 (656)
                      .....+.++|++..++ +...++.|.+||..+++...... .+...+..++|+|+|+++++++. ++.+.+||..+++.+
T Consensus       163 ~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~  242 (432)
T d1qksa2         163 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  242 (432)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEE
Confidence            4456788899888764 55667999999999887655433 35567889999999998877764 557888888766554


Q ss_pred             Eeee--------------------------------------------CCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          583 TPLM--------------------------------------------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       583 ~~~~--------------------------------------------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      ..+.                                            .|...|....+++++..+++++.+++.++|+.
T Consensus       243 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~  322 (432)
T d1qksa2         243 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVD  322 (432)
T ss_dssp             EEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEE
T ss_pred             EEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeec
Confidence            3321                                            11123555667777777888888888888876


Q ss_pred             CCC
Q 006220          619 TTS  621 (656)
Q Consensus       619 ~~~  621 (656)
                      .+.
T Consensus       323 ~~~  325 (432)
T d1qksa2         323 ATL  325 (432)
T ss_dssp             CTT
T ss_pred             ccC
Confidence            543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.81  E-value=5.7e-17  Score=162.11  Aligned_cols=228  Identities=13%  Similarity=0.105  Sum_probs=179.2

Q ss_pred             EEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEE-EEEeCCCeE
Q 006220          367 AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSADTTI  445 (656)
Q Consensus       367 a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L-~s~s~Dg~I  445 (656)
                      ++++.|+.|.|||+.+.                            +....+. ....+.+++|+|||++| ++++.++.|
T Consensus         6 V~~~~~~~v~v~D~~t~----------------------------~~~~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i   56 (301)
T d1l0qa2           6 IANSESDNISVIDVTSN----------------------------KVTATIP-VGSNPMGAVISPDGTKVYVANAHSNDV   56 (301)
T ss_dssp             EEETTTTEEEEEETTTT----------------------------EEEEEEE-CSSSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             EEECCCCEEEEEECCCC----------------------------eEEEEEE-CCCCceEEEEeCCCCEEEEEECCCCEE
Confidence            45678999999998752                            2222222 23457899999999987 567789999


Q ss_pred             EEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE-ECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEE-E
Q 006220          446 RLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-G  523 (656)
Q Consensus       446 ~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t-g  523 (656)
                      ++||+.+++.+..+..+.. +..+.|++++.+++++ ..++.+.+|+..+++....+..+ ..+.++.|+|++..++. +
T Consensus        57 ~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~  134 (301)
T d1l0qa2          57 SIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTN  134 (301)
T ss_dssp             EEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeee
Confidence            9999999999988887764 5789999999876554 56789999999999888887754 56789999999998765 4


Q ss_pred             ECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC-CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC
Q 006220          524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS  602 (656)
Q Consensus       524 s~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d-g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~  602 (656)
                      ..++.+.+|+..++..+..+..+ ..+.+++++|+++.+++++.+ +.+.+|+............+ ..+.+++|++++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~  212 (301)
T d1l0qa2         135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGT  212 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSS
T ss_pred             ccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeecccccc
Confidence            46788999999999999887755 457889999999988887755 66778887777766666544 4568899999999


Q ss_pred             EEEEEEC---CCcEEEEeCCCCCceeec
Q 006220          603 LLASGSA---DCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       603 ~l~sgs~---Dg~I~iWd~~~~~~~~~~  627 (656)
                      .++.++.   ++.|++||+.+++.....
T Consensus       213 ~~~v~~~~~~~~~v~v~D~~t~~~~~~~  240 (301)
T d1l0qa2         213 KAYVTNVDKYFNTVSMIDTGTNKITARI  240 (301)
T ss_dssp             EEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             ccccccccceeeeeeeeecCCCeEEEEE
Confidence            8876653   468999999988765443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=5e-17  Score=165.25  Aligned_cols=267  Identities=10%  Similarity=0.166  Sum_probs=186.5

Q ss_pred             ccceecCCCCCC-ceeEEEEeeCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220          329 RNRVHLSSAALP-SVSFYTFINTHNGLNCASISQDGSLVAGGF-SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (656)
Q Consensus       329 ~~~v~l~~~~~p-s~~~~~~~~~~~~V~~l~fs~dg~~La~g~-~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (656)
                      .+.+++|+.... ........++.+.+.+++|||||++|++++ .|+.|++|++.....                     
T Consensus        13 ~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~---------------------   71 (333)
T d1ri6a_          13 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG---------------------   71 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC---------------------
T ss_pred             CCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC---------------------
Confidence            457788875433 345566778889999999999999986554 589999999875211                     


Q ss_pred             CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeC-CCeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEE-
Q 006220          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSS-  482 (656)
Q Consensus       407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~-Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs-  482 (656)
                          .........+...+.+++|+|||++|++++. +++|.+|+.........  ...+...+.++.++|+++++++++ 
T Consensus        72 ----~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~  147 (333)
T d1ri6a_          72 ----ALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL  147 (333)
T ss_dssp             ----CEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred             ----cEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc
Confidence                1112222234455678999999999988875 67899999876654333  345666788999999999988887 


Q ss_pred             CCCcEEEEECCCCceeEE------ecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCe----eEEEEe------c
Q 006220          483 HDRTARIWSMDRIQPLRI------MAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGE----CVRIFI------G  545 (656)
Q Consensus       483 ~Dg~i~lwd~~~~~~~~~------~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~----~~~~~~------~  545 (656)
                      .+..+.+|+.........      ..........++|++++.+++... ..+...+|+.....    ......      .
T Consensus       148 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  227 (333)
T d1ri6a_         148 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS  227 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred             ccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCC
Confidence            456799999876543321      123445678899999999887665 45677888765322    112221      1


Q ss_pred             CCCCeEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCeeeEeee---CCCccEEEEEEcCCCCEEEEEEC-CCcEEEEeCCC
Q 006220          546 HRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSA-DCTVKLWDVTT  620 (656)
Q Consensus       546 h~~~i~~l~~sp~g~~L~s~-~~dg~I~iwD~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~sgs~-Dg~I~iWd~~~  620 (656)
                      .......+++++++++++.+ ..++.+.+|++..........   .+...+.+++|+|||++|++++. ++.|++|++..
T Consensus       228 ~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         228 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             ccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            23456778999999977665 467789999987654443332   33456788999999998877764 58899997654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=2.9e-17  Score=166.72  Aligned_cols=230  Identities=10%  Similarity=0.038  Sum_probs=167.3

Q ss_pred             ccceecCCCCCCceeE-EEEeeCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220          329 RNRVHLSSAALPSVSF-YTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~-~~~~~~~~~V~~l~fs~dg~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (656)
                      .+++++|+........ +....+...+.+++|+|||+++ ++++.++.|.+||+.+.........               
T Consensus        10 d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~---------------   74 (337)
T d1pbyb_          10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL---------------   74 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC---------------
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec---------------
Confidence            3577888776554322 2222334568899999999987 5667899999999886322111000               


Q ss_pred             CCCCceeeEEeecCccCEEEEEEccCCCEEEEEe------------CCCeEEEEeccCCceeEEeeCCCccEEEEEEecC
Q 006220          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS------------ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ  474 (656)
Q Consensus       407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s------------~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~  474 (656)
                              .....+...+..++|+|+++++++++            .++.+.+||..++.....+..+ ..+.+++|+|+
T Consensus        75 --------~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~d  145 (337)
T d1pbyb_          75 --------STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARD  145 (337)
T ss_dssp             --------CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTT
T ss_pred             --------CCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCC
Confidence                    00011223445789999999988776            3578999999999888877754 45788999999


Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEE------------------------------------------------------
Q 006220          475 GHYFASSSHDRTARIWSMDRIQPLRI------------------------------------------------------  500 (656)
Q Consensus       475 ~~~l~sgs~Dg~i~lwd~~~~~~~~~------------------------------------------------------  500 (656)
                      |.++++++.+  +.+||..+.+....                                                      
T Consensus       146 g~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (337)
T d1pbyb_         146 GSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT  223 (337)
T ss_dssp             SSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred             CCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEE
Confidence            9999998654  66787764432221                                                      


Q ss_pred             ------------ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220          501 ------------MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (656)
Q Consensus       501 ------------~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d  568 (656)
                                  +..+...+.++.++|++.+++.+  ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~  300 (337)
T d1pbyb_         224 MDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBS
T ss_pred             EEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCC
Confidence                        11233445566777888887765  5899999999999998875 56678999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEeeeC
Q 006220          569 GTIMMWDLASGRCVTPLMG  587 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~~  587 (656)
                      |.|.+||..+++.+.++..
T Consensus       301 ~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         301 GDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             SEEEEEETTTCCEEEEEEC
T ss_pred             CcEEEEECCCCcEEEEEEC
Confidence            9999999999999988864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.74  E-value=9.6e-16  Score=158.83  Aligned_cols=246  Identities=11%  Similarity=0.020  Sum_probs=173.9

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          348 INTHNGLNCASISQDGSLVAGGF-----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g~-----~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      ..+.+.+.+++++|||+.+++..     ..+.|.+||..+                            .+....+..+..
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t----------------------------g~~~~~~~~~~~   68 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS----------------------------GSILGHVNGGFL   68 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCC----------------------------CCEEEEEeCCCC
Confidence            35667899999999999987652     345688888664                            223333444444


Q ss_pred             CEEEEEEccCCCEEEEEe----------CCCeEEEEeccCCceeEEeeCCCccE-------EEEEEecCCCEEEEEE--C
Q 006220          423 PVYSASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGHNYPV-------WDVQFNPQGHYFASSS--H  483 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h~~~V-------~~l~~sp~~~~l~sgs--~  483 (656)
                      +  .++|+|||++|++++          .++.|.+||..+++.+..+..+....       ..+.|++++..++...  .
T Consensus        69 ~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          69 P--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             c--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence            3  689999999998875          45789999999999887776665443       4578888888766554  4


Q ss_pred             CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCeeEEEEec-----------------
Q 006220          484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIG-----------------  545 (656)
Q Consensus       484 Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l-~tgs~dg~V~iwd~~~~~~~~~~~~-----------------  545 (656)
                      ++.+.+|+....+.....    ....++.++|++..+ ++.+.|+.+.+||...+........                 
T Consensus       147 ~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (373)
T d2madh_         147 GPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             CCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC
Confidence            567888888776554433    345678888888755 5677889999998766544332110                 


Q ss_pred             --------------------------------CC----------CCeEEEEEcCCCCEEE----------EEECCCcEEE
Q 006220          546 --------------------------------HR----------SMILSLAMSPDGRYMA----------SGDEDGTIMM  573 (656)
Q Consensus       546 --------------------------------h~----------~~i~~l~~sp~g~~L~----------s~~~dg~I~i  573 (656)
                                                      +.          .....+++++++..++          +...++.|.+
T Consensus       223 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~  302 (373)
T d2madh_         223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             CCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence                                            00          0112245555555443          3455678999


Q ss_pred             EeCCCCeeeEeeeCCCccEEEEEEcCCCC--EEEEEECCCcEEEEeCCCCCceeecc
Q 006220          574 WDLASGRCVTPLMGHTSCVWTLAYSCEGS--LLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       574 wD~~~~~~~~~~~~h~~~V~~l~~s~~~~--~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      ||..+++.+..+. +...+.+++|+|||+  ++++++.|++|+|||+.+++.+....
T Consensus       303 ~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         303 VTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             EECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            9999999888774 556789999999998  45788999999999999998766553

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=7.4e-16  Score=158.22  Aligned_cols=241  Identities=12%  Similarity=0.058  Sum_probs=171.2

Q ss_pred             EEEcCCCCEEEEEe-----CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220          357 ASISQDGSLVAGGF-----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (656)
Q Consensus       357 l~fs~dg~~La~g~-----~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  431 (656)
                      .+.+||++.+++..     .++.|.+||..+.                            +....+..+..+  .++|||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg----------------------------~~~~~~~~g~~~--~~a~Sp   56 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG----------------------------RVIGMIDGGFLP--NPVVAD   56 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT----------------------------EEEEEEEECSSC--EEEECT
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCC----------------------------cEEEEEECCCCC--ceEEcC
Confidence            35689999987753     3557999998752                            233334444333  789999


Q ss_pred             CCCEEEEEe----------CCCeEEEEeccCCceeEEeeCCCc-------cEEEEEEecCCCEEEEEE--CCCcEEEEEC
Q 006220          432 LGDFILSSS----------ADTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNPQGHYFASSS--HDRTARIWSM  492 (656)
Q Consensus       432 d~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~l~~sp~~~~l~sgs--~Dg~i~lwd~  492 (656)
                      ||++|++++          .|+.|++||+.+++.+..+..+..       ....++|+|++.++++++  .+..+.+|+.
T Consensus        57 Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~  136 (355)
T d2bbkh_          57 DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL  136 (355)
T ss_dssp             TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred             CCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeec
Confidence            999887643          478999999999988776654322       235689999999888775  4578899999


Q ss_pred             CCCceeEEecCC---------------------------------------------CCCeeEEEEcCCCCEEEEEECCC
Q 006220          493 DRIQPLRIMAGH---------------------------------------------LSDVDCVRWHINCNYIATGSSDK  527 (656)
Q Consensus       493 ~~~~~~~~~~~~---------------------------------------------~~~V~~v~~~p~~~~l~tgs~dg  527 (656)
                      .+++.+..+..+                                             ...+....+.+++..++.++.++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (355)
T d2bbkh_         137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTG  216 (355)
T ss_dssp             TTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTS
T ss_pred             CCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCC
Confidence            877655433211                                             11123345566667788888899


Q ss_pred             cEEEEeCCCCeeEE--EEecCC----------CCeEEEEEcCCCCEEEEEECC----------CcEEEEeCCCCeeeEee
Q 006220          528 TVRLWDVSSGECVR--IFIGHR----------SMILSLAMSPDGRYMASGDED----------GTIMMWDLASGRCVTPL  585 (656)
Q Consensus       528 ~V~iwd~~~~~~~~--~~~~h~----------~~i~~l~~sp~g~~L~s~~~d----------g~I~iwD~~~~~~~~~~  585 (656)
                      .+++|++..+....  ....+.          .....+++++++..++....+          +.|.+||..+++.+..+
T Consensus       217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~  296 (355)
T d2bbkh_         217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF  296 (355)
T ss_dssp             EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred             eEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe
Confidence            99999998775432  122111          223458899999988776543          36999999999988877


Q ss_pred             eCCCccEEEEEEcCCCC--EEEEEECCCcEEEEeCCCCCceeecc
Q 006220          586 MGHTSCVWTLAYSCEGS--LLASGSADCTVKLWDVTTSTKVLKTE  628 (656)
Q Consensus       586 ~~h~~~V~~l~~s~~~~--~l~sgs~Dg~I~iWd~~~~~~~~~~~  628 (656)
                      .. ...+.+++|+|||+  ++++++.|++|+|||+.+++.+....
T Consensus       297 ~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         297 EM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             cC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            53 35678999999997  45677789999999999998766553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=4.4e-15  Score=150.89  Aligned_cols=237  Identities=10%  Similarity=0.033  Sum_probs=154.1

Q ss_pred             ccceecCCCCCCceeEEEE-eeCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220          329 RNRVHLSSAALPSVSFYTF-INTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (656)
Q Consensus       329 ~~~v~l~~~~~ps~~~~~~-~~~~~~V~~l~fs~dg~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (656)
                      .+.+++|+...... ..++ ..+...+.+++|+|||+++ +++..++.|.+||+.+..........              
T Consensus        17 ~~~v~v~D~~t~~~-~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~--------------   81 (346)
T d1jmxb_          17 PNNLHVVDVASDTV-YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS--------------   81 (346)
T ss_dssp             TTEEEEEETTTTEE-EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC--------------
T ss_pred             CCEEEEEECCCCCE-EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc--------------
Confidence            34677887765543 3333 3456678999999999987 55567899999998763222111000              


Q ss_pred             CCCCceeeEEeecCccCEEEEEEccCCCEEEEEe------------CCCeEEEEeccCCceeEEeeCC--CccEEEEEEe
Q 006220          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS------------ADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFN  472 (656)
Q Consensus       407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s------------~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~l~~s  472 (656)
                              .....+...+..++|+|||+++++++            .++.+.+|+..++.....+..+  ...+..+.++
T Consensus        82 --------~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (346)
T d1jmxb_          82 --------SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA  153 (346)
T ss_dssp             --------CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred             --------ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEec
Confidence                    00011223455788999999887665            4677888888766544322211  1223344444


Q ss_pred             cCCCEEEEE----------------------------------------------------------------ECCCcEE
Q 006220          473 PQGHYFASS----------------------------------------------------------------SHDRTAR  488 (656)
Q Consensus       473 p~~~~l~sg----------------------------------------------------------------s~Dg~i~  488 (656)
                      +++..++++                                                                ..++.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
T d1jmxb_         154 DDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  233 (346)
T ss_dssp             TTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             CCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEE
Confidence            444433321                                                                1122233


Q ss_pred             EEECCCCceeE-EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220          489 IWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       489 lwd~~~~~~~~-~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      +|+..++.... ....+...+.++.+++++.+++.+. ++.|++||..+++.++.+. +...+.+++|+|||++|++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~  311 (346)
T d1jmxb_         234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGT  311 (346)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESB
T ss_pred             EEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeC
Confidence            34443333222 2234555677788888887777665 4579999999999988776 4567899999999999999999


Q ss_pred             CCcEEEEeCCCCeeeEeeeCCCc
Q 006220          568 DGTIMMWDLASGRCVTPLMGHTS  590 (656)
Q Consensus       568 dg~I~iwD~~~~~~~~~~~~h~~  590 (656)
                      ||.|.+||..+++.+.++..+.+
T Consensus       312 d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         312 FNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             SSEEEEEETTTTEEEEEEECSSS
T ss_pred             CCcEEEEECccCCEEEEEECCCC
Confidence            99999999999999998875443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=7.1e-14  Score=141.44  Aligned_cols=235  Identities=12%  Similarity=0.210  Sum_probs=166.6

Q ss_pred             EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEE-eCCC
Q 006220          365 LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADT  443 (656)
Q Consensus       365 ~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~-s~Dg  443 (656)
                      .++++..|+.|+||++...+                          .........|.+.|.+++|+|||++|+++ ..|+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~--------------------------~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~   59 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG--------------------------ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF   59 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS--------------------------CEEEEEEEECSSCCCCEEECTTSSEEEEEETTTT
T ss_pred             EEEECCCCCcEEEEEEcCCC--------------------------CeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCC
Confidence            45777899999999987421                          11223345688999999999999988554 4589


Q ss_pred             eEEEEeccCCceeEEe---eCCCccEEEEEEecCCCEEEEEEC-CCcEEEEECCCCceeEE--ecCCCCCeeEEEEcCCC
Q 006220          444 TIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRI--MAGHLSDVDCVRWHINC  517 (656)
Q Consensus       444 ~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~lwd~~~~~~~~~--~~~~~~~V~~v~~~p~~  517 (656)
                      .|++|++.........   ..+...+..++|+|+|+++++++. ++.+.+|+.........  ...+...+.++.++|++
T Consensus        60 ~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~  139 (333)
T d1ri6a_          60 RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN  139 (333)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS
T ss_pred             eEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc
Confidence            9999999866543332   224455778999999999999885 67899998876654433  33566778999999999


Q ss_pred             CEEEEEEC-CCcEEEEeCCCCeeEEE------EecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCe----eeEee
Q 006220          518 NYIATGSS-DKTVRLWDVSSGECVRI------FIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGR----CVTPL  585 (656)
Q Consensus       518 ~~l~tgs~-dg~V~iwd~~~~~~~~~------~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~----~~~~~  585 (656)
                      +++++++. +..|.+|+.........      ..........++|++++.+++... ..+...+|++....    .....
T Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  219 (333)
T d1ri6a_         140 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL  219 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred             eeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeee
Confidence            99888775 45799999876543221      123345678899999999887655 55677888764432    11122


Q ss_pred             e------CCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCCcee
Q 006220          586 M------GHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       586 ~------~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~~~~~~  625 (656)
                      .      ........+++++++++++.+. .++.+.+|++.......
T Consensus       220 ~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (333)
T d1ri6a_         220 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL  266 (333)
T ss_dssp             ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred             eeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE
Confidence            1      1234567889999998766654 66889999998765443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=5.7e-14  Score=143.83  Aligned_cols=246  Identities=13%  Similarity=0.059  Sum_probs=155.6

Q ss_pred             cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEE----------eCCCcEEEEEcCCCCcccccccCCCCCCCC
Q 006220          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGG----------FSDSSLKVWDMAKLGQQAVSSGLQGENDTT  399 (656)
Q Consensus       330 ~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g----------~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~  399 (656)
                      ..+++|+....... -++..+  .+..++|||||++|++.          ..++.|++||+.+..............   
T Consensus        28 ~~v~v~D~~tg~~~-~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~---  101 (355)
T d2bbkh_          28 TQQFVIDGEAGRVI-GMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR---  101 (355)
T ss_dssp             EEEEEEETTTTEEE-EEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC---
T ss_pred             CeEEEEECCCCcEE-EEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce---
Confidence            45666665544332 233322  34479999999988764          347899999998644322111000000   


Q ss_pred             CCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe--CCCeEEEEeccCCceeEEeeC----------------
Q 006220          400 PREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYKG----------------  461 (656)
Q Consensus       400 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s--~Dg~I~lwd~~~~~~~~~~~~----------------  461 (656)
                                        .........++|+|++++++.++  .+..+.+|+..++..+..+..                
T Consensus       102 ------------------~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d2bbkh_         102 ------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  163 (355)
T ss_dssp             ------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             ------------------eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence                              00011223456677766655443  345566666665544332221                


Q ss_pred             -----------------------------CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE--ecCC------
Q 006220          462 -----------------------------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI--MAGH------  504 (656)
Q Consensus       462 -----------------------------h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~--~~~~------  504 (656)
                                                   +...+....+++++..++.++.++.+++|++..+.....  ...+      
T Consensus       164 ~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (355)
T d2bbkh_         164 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  243 (355)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             EcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEe
Confidence                                         112233456677777888888999999999887653221  1111      


Q ss_pred             ----CCCeeEEEEcCCCCEEEEEECC----------CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCC--EEEEEECC
Q 006220          505 ----LSDVDCVRWHINCNYIATGSSD----------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR--YMASGDED  568 (656)
Q Consensus       505 ----~~~V~~v~~~p~~~~l~tgs~d----------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~--~L~s~~~d  568 (656)
                          ......+++++++..++..+.+          ..|.+||..+++.+..+.. ...+.+++|+|||+  ++++++.|
T Consensus       244 ~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d  322 (355)
T d2bbkh_         244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGD  322 (355)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTT
T ss_pred             eeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCC
Confidence                1233568899999988876544          3699999999999887764 35588999999997  45667789


Q ss_pred             CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE  600 (656)
Q Consensus       569 g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~  600 (656)
                      +.|.+||+.+++.+.++.++......+.+..+
T Consensus       323 ~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         323 KTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             TEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             CEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence            99999999999999999877655555555443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.55  E-value=2.8e-12  Score=132.10  Aligned_cols=265  Identities=12%  Similarity=-0.038  Sum_probs=167.1

Q ss_pred             ceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCcccccccCCCCC---C
Q 006220          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGEN---D  397 (656)
Q Consensus       331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~---~  397 (656)
                      .+.+++....... .++..+  ....++|||||++|++++          .++.|.|||..+..............   .
T Consensus        48 ~v~v~D~~tg~~~-~~~~~~--~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~  124 (373)
T d2madh_          48 QQWVLDAGSGSIL-GHVNGG--FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG  124 (373)
T ss_pred             eEEEEECCCCCEE-EEEeCC--CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEec
Confidence            4555554444332 233322  234799999999999875          35789999998755432211110000   0


Q ss_pred             CCCCccccCCCCCcee---------e-------EEeecCccCEEEEEEccCCCE-EEEEeCCCeEEEEeccCCceeEEee
Q 006220          398 TTPREDIIGPNGRKRS---------Y-------TLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYK  460 (656)
Q Consensus       398 ~~~~~~~~~~~~~~~~---------~-------~~l~~h~~~V~~l~~spd~~~-L~s~s~Dg~I~lwd~~~~~~~~~~~  460 (656)
                      .......+.+++....         .       .....+.....++.++|+++. +++.+.|+++.+|+...+.......
T Consensus       125 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~  204 (373)
T d2madh_         125 PYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV  204 (373)
T ss_pred             cCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence            0000011111111100         0       112234455678899999875 4688899999999998877765544


Q ss_pred             CCC------ccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe--cCC----------CCCeeEEEEcCCCCEE--
Q 006220          461 GHN------YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM--AGH----------LSDVDCVRWHINCNYI--  520 (656)
Q Consensus       461 ~h~------~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~--~~~----------~~~V~~v~~~p~~~~l--  520 (656)
                      .+.      .....+.+++++ .++..+.++.+.+|+..........  ..+          ......+++++++..+  
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  283 (373)
T d2madh_         205 GAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL  283 (373)
T ss_pred             eeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEE
Confidence            321      223344555555 4556667899999998876533221  111          1223345566665544  


Q ss_pred             --------EEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCE--EEEEECCCcEEEEeCCCCeeeEeeeCCCc
Q 006220          521 --------ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY--MASGDEDGTIMMWDLASGRCVTPLMGHTS  590 (656)
Q Consensus       521 --------~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~--L~s~~~dg~I~iwD~~~~~~~~~~~~h~~  590 (656)
                              ++...++.+.+||..+++.+..+. +...+.+++|+|||+.  +++++.|+.|++||+.+++.+..+..+..
T Consensus       284 ~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~  362 (373)
T d2madh_         284 LTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGS  362 (373)
T ss_pred             ecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCC
Confidence                    345567789999999999988775 5677899999999984  46788999999999999999999988877


Q ss_pred             cEEEEEEcCC
Q 006220          591 CVWTLAYSCE  600 (656)
Q Consensus       591 ~V~~l~~s~~  600 (656)
                      ..+.+++..+
T Consensus       363 ~P~~l~~~~~  372 (373)
T d2madh_         363 GPQVLSVMNE  372 (373)
T ss_pred             CCcEEEEecC
Confidence            7778877543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=3.5e-13  Score=139.62  Aligned_cols=248  Identities=8%  Similarity=-0.054  Sum_probs=164.3

Q ss_pred             EEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220          355 NCASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (656)
Q Consensus       355 ~~l~fs~dg~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  424 (656)
                      ..++|+|||++|++.+          .|+.|++||..+............                 ..    .......
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~-----------------~~----~~~g~~p  126 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-----------------PR----FSVGPRV  126 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS-----------------CS----CCBSCCT
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc-----------------ce----ecccCCc
Confidence            3589999999998864          367799999876432221110000                 00    0001112


Q ss_pred             EEEEEccCCCEEEEEe-CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE---
Q 006220          425 YSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI---  500 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~---  500 (656)
                      ..++|+|||++|+++. .+++|.+||+.+++....+..+.....   +......++..+.||++.+|+.........   
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~  203 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeee
Confidence            3589999999988776 579999999999988887776554321   122345677778889888888765443322   


Q ss_pred             ---ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe--cC----------CCCeEEEEEcCCCCEEEEE
Q 006220          501 ---MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GH----------RSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       501 ---~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~--~h----------~~~i~~l~~sp~g~~L~s~  565 (656)
                         +..+...+..+.+++++..+.+.  .+.+++++...+.......  .+          .+....++++|++..++..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~  281 (368)
T d1mdah_         204 AQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             cccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEE
Confidence               22344556677888887666543  5667777776554443221  11          1123457889998877665


Q ss_pred             ECC---------CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC--EEEEEECCCcEEEEeCCCCCceeeccc
Q 006220          566 DED---------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS--LLASGSADCTVKLWDVTTSTKVLKTEE  629 (656)
Q Consensus       566 ~~d---------g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~--~l~sgs~Dg~I~iWd~~~~~~~~~~~~  629 (656)
                      ..+         ..|.+||..+++.+..+.. ...+.+++|+|||+  +++++..|+.|+|||..+++.+...+.
T Consensus       282 ~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         282 TVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             ecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            322         3599999999998887753 35788999999997  356677889999999999987765543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.35  E-value=1.6e-11  Score=131.25  Aligned_cols=125  Identities=17%  Similarity=0.195  Sum_probs=88.6

Q ss_pred             cceecCCCCCCceeEE----EEeeCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCCcccccccCCCCC
Q 006220          330 NRVHLSSAALPSVSFY----TFINTHNGLNCASISQDGSLVAGGFS---------DSSLKVWDMAKLGQQAVSSGLQGEN  396 (656)
Q Consensus       330 ~~v~l~~~~~ps~~~~----~~~~~~~~V~~l~fs~dg~~La~g~~---------dg~I~Iwdl~~~~~~~~~~~~~~~~  396 (656)
                      ..+.+++........+    ++..+...|.++.|||||++||.++.         ++.+.|||+.+.             
T Consensus        36 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~-------------  102 (470)
T d2bgra1          36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-------------  102 (470)
T ss_dssp             SCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-------------
T ss_pred             CcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC-------------
Confidence            3466666555443321    12233467999999999999998753         467889998752             


Q ss_pred             CCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC--------------
Q 006220          397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH--------------  462 (656)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h--------------  462 (656)
                                      ....+..|.+.+..+.|||||+.++... ++.+.+|+..++........+              
T Consensus       103 ----------------~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~  165 (470)
T d2bgra1         103 ----------------QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (470)
T ss_dssp             ----------------EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             ----------------cccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceee
Confidence                            2334566888999999999999999864 578999999888765433221              


Q ss_pred             ----CccEEEEEEecCCCEEEEEECC
Q 006220          463 ----NYPVWDVQFNPQGHYFASSSHD  484 (656)
Q Consensus       463 ----~~~V~~l~~sp~~~~l~sgs~D  484 (656)
                          .+....+.|||+|.++++...|
T Consensus       166 ~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         166 EEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             eeeecCCccccEECCCCCccceeEec
Confidence                1224567899999999998654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.29  E-value=2.6e-11  Score=126.74  Aligned_cols=276  Identities=10%  Similarity=0.043  Sum_probs=175.3

Q ss_pred             eCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220          349 NTHNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (656)
Q Consensus       349 ~~~~~V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  427 (656)
                      .|+-.+.+..++|||++|.+. ..++.|.+||+.+...                           .......+...+.++
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~---------------------------~~ii~iP~g~gphgi  121 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKT---------------------------DKITHIPNVQAIHGL  121 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE---------------------------EEEEECTTCCCEEEE
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcE---------------------------eeEEecCCCCCccce
Confidence            344556777788999998665 4688999999886221                           111123456788999


Q ss_pred             EEccCCC--EEEEEeCCC-----------------eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC----
Q 006220          428 SFSPLGD--FILSSSADT-----------------TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----  484 (656)
Q Consensus       428 ~~spd~~--~L~s~s~Dg-----------------~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D----  484 (656)
                      +|+|+++  +++..+.+.                 .+..+|..+......+.... ....+.|+|+|.++++++.+    
T Consensus       122 ~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~  200 (441)
T d1qnia2         122 RLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERA  200 (441)
T ss_dssp             EECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCC
T ss_pred             EEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEecCCCce
Confidence            9999998  444444432                 23557877777766655433 46789999999998887643    


Q ss_pred             -------------------------------------CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEE-EECC
Q 006220          485 -------------------------------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-GSSD  526 (656)
Q Consensus       485 -------------------------------------g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t-gs~d  526 (656)
                                                           +.+.+++....+.++.+....+ ...+.++|+|+++++ +..+
T Consensus       201 ~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~  279 (441)
T d1qnia2         201 VDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLS  279 (441)
T ss_dssp             SSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTS
T ss_pred             EEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcC
Confidence                                                 3445555555556666665533 578999999998865 5678


Q ss_pred             CcEEEEeCCCCe-----------eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC----------CeeeEee
Q 006220          527 KTVRLWDVSSGE-----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPL  585 (656)
Q Consensus       527 g~V~iwd~~~~~-----------~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~----------~~~~~~~  585 (656)
                      ++|.+||+.+..           ++.-.....-.....+|.++|..+.+.+.|..|..|++..          ...+..+
T Consensus       280 ~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~  359 (441)
T d1qnia2         280 PTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKL  359 (441)
T ss_dssp             SBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEE
T ss_pred             CcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEecc
Confidence            999999986422           1111111111244568999999889999999999999741          1223333


Q ss_pred             -----eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEE
Q 006220          586 -----MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ  653 (656)
Q Consensus       586 -----~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~  653 (656)
                           .+|...+.+.+++|||++|++++.-..=|++.+..........-.-....++++.-.|+...|-+++.
T Consensus       360 ~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~~~~~~~~~~eph~~~~  432 (441)
T d1qnia2         360 DVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMKLVHDGPTYAEPHDCIL  432 (441)
T ss_dssp             ECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEE
T ss_pred             ccccCCCCCccccccccCCCCcEEEecCccccccCcCCCCCCCccceeEEecCCeEEEEecCCCCCCCcceEE
Confidence                 46766677778999999999995433333333322221111000111233456666666666655543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.27  E-value=7.6e-11  Score=125.90  Aligned_cols=144  Identities=15%  Similarity=0.194  Sum_probs=108.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCE
Q 006220          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (656)
Q Consensus       356 ~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~  435 (656)
                      .+.|.+|+.++..  .++.|.+||+.+.......                       ....+..|...|.++.|||||++
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~-----------------------~~~~~~~~~~~i~~~~~SpDg~~   75 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFL-----------------------ENSTFDEFGHSINDYSISPDGQF   75 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEE-----------------------CTTTTTTSSSCCCEEEECTTSSE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEE-----------------------chhhhhhccCccceeEECCCCCE
Confidence            4678899987764  5888999998864322110                       00123456788999999999999


Q ss_pred             EEEEeC---------CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC--
Q 006220          436 ILSSSA---------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH--  504 (656)
Q Consensus       436 L~s~s~---------Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~--  504 (656)
                      |+.++.         ++.+.+||+.+++ +..+..|...+..+.|||+|+++|.. .++.+++|+..++...+....+  
T Consensus        76 i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~  153 (470)
T d2bgra1          76 ILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKE  153 (470)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBT
T ss_pred             EEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCC
Confidence            998753         5678999999776 45577788899999999999999986 4678999999888766544322  


Q ss_pred             ----------------CCCeeEEEEcCCCCEEEEEECC
Q 006220          505 ----------------LSDVDCVRWHINCNYIATGSSD  526 (656)
Q Consensus       505 ----------------~~~V~~v~~~p~~~~l~tgs~d  526 (656)
                                      .+....+.|+|+|++|+....|
T Consensus       154 ~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             CcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence                            2335678899999999987654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.25  E-value=2e-10  Score=119.95  Aligned_cols=249  Identities=11%  Similarity=0.113  Sum_probs=163.5

Q ss_pred             EEEEeCCCcEEEEEcCCCCcccccccCCCCC--CCCCC---ccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEE-
Q 006220          366 VAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN--DTTPR---EDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-  439 (656)
Q Consensus       366 La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~-  439 (656)
                      +++|+.+|.|+||++................  .....   ..+...   .........|........++|||++|++. 
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~---~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d   90 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGG---DQQYLNGDCHHPHISMTDGRYDGKYLFIND   90 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCS---SSCCSCCCBCCCEEEEETTEEEEEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEec---ccccccCcccCCCcceecccCCCCEEEEEc
Confidence            5678889999999997655433322111100  00000   000000   00111123355566677788999988655 


Q ss_pred             eCCCeEEEEeccCCceeEEee-CCCccEEEEEEecCCC--EEEEEECCC-----------------cEEEEECCCCceeE
Q 006220          440 SADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGH--YFASSSHDR-----------------TARIWSMDRIQPLR  499 (656)
Q Consensus       440 s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~--~l~sgs~Dg-----------------~i~lwd~~~~~~~~  499 (656)
                      ..+++|.+||+.+++....+. .+...+..++|+|+|+  |++..+.+.                 .+..+|..+.+...
T Consensus        91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            568899999999998877665 3567899999999988  555554432                 23557888877776


Q ss_pred             EecCCCCCeeEEEEcCCCCEEEEEECC-----------------------------------------CcEEEEeCCCCe
Q 006220          500 IMAGHLSDVDCVRWHINCNYIATGSSD-----------------------------------------KTVRLWDVSSGE  538 (656)
Q Consensus       500 ~~~~~~~~V~~v~~~p~~~~l~tgs~d-----------------------------------------g~V~iwd~~~~~  538 (656)
                      .+... .....++|+|+|+++++++.+                                         +.+.+++.....
T Consensus       171 qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         171 QVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             EEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            66543 457889999999999887643                                         344555555555


Q ss_pred             eEEEEecCCCCeEEEEEcCCCCEEEE-EECCCcEEEEeCCCCeee--------EeeeC---CCccEEEEEEcCCCCEEEE
Q 006220          539 CVRIFIGHRSMILSLAMSPDGRYMAS-GDEDGTIMMWDLASGRCV--------TPLMG---HTSCVWTLAYSCEGSLLAS  606 (656)
Q Consensus       539 ~~~~~~~h~~~i~~l~~sp~g~~L~s-~~~dg~I~iwD~~~~~~~--------~~~~~---h~~~V~~l~~s~~~~~l~s  606 (656)
                      .++.+....+ ...+.++|||+++++ +..+++|.+||+.+....        ..+.+   ..-.....+|+++|..+.+
T Consensus       250 v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts  328 (441)
T d1qnia2         250 FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT  328 (441)
T ss_dssp             SEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEE
T ss_pred             eEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEc
Confidence            6666665544 467899999998754 678999999998652211        11111   1123455689999999999


Q ss_pred             EECCCcEEEEeCC
Q 006220          607 GSADCTVKLWDVT  619 (656)
Q Consensus       607 gs~Dg~I~iWd~~  619 (656)
                      ...|..|.-|++.
T Consensus       329 ~~~ds~v~kw~~~  341 (441)
T d1qnia2         329 LFIDSQVCKWNIA  341 (441)
T ss_dssp             ETTTTEEEEEEHH
T ss_pred             ccccceEEEeccc
Confidence            9999999999984

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=2e-09  Score=105.32  Aligned_cols=237  Identities=11%  Similarity=0.068  Sum_probs=157.3

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          352 NGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      -.-..++++++|++.++. ...+.|..++......                           ......+ .....+++++
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~---------------------------~~~~~~~-~~~p~gvav~   65 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT---------------------------TVLPFNG-LYQPQGLAVD   65 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CE---------------------------EECCCCS-CCSCCCEEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE---------------------------EEeccCC-ccCceEEEEc
Confidence            346899999999976665 3456677666543111                           0111111 1234578899


Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeE
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC  510 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~  510 (656)
                      +++..+++....+.+++++..+...+....+ .....++++.++++++++-..+..+..++..................+
T Consensus        66 ~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  144 (260)
T d1rwia_          66 GAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDG  144 (260)
T ss_dssp             TTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCE
T ss_pred             CCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeeeeecccCCcce
Confidence            9999888777777777776554444433332 345689999999998887767777877776654433222233455688


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-CCC
Q 006220          511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHT  589 (656)
Q Consensus       511 v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-~h~  589 (656)
                      ++++++++.+++...++.|..+|...................|++.++|+++++....+.|..++...... ..+. ..-
T Consensus       145 i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~  223 (260)
T d1rwia_         145 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGL  223 (260)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSC
T ss_pred             eeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCC
Confidence            99999999888888888999999776544433334456678999999999888888888898888654432 2222 222


Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          590 SCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (656)
Q Consensus       590 ~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~  618 (656)
                      ....+|+++++|.++++-..++.|+..+.
T Consensus       224 ~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         224 NTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            45789999999998887666676654443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.12  E-value=1.9e-08  Score=103.39  Aligned_cols=265  Identities=11%  Similarity=0.071  Sum_probs=147.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  429 (656)
                      ....+.-++|++++++|.+.. .+.+..|.+..............  ..........+++....+.....+.+.|....+
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~--~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPI--GGHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEEC--CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecC--CCCcEEEEECCCCCEEEEEEecCCCCEEEEeEc
Confidence            344567799999999998774 46788888764322111100000  000001111111111112222233455555555


Q ss_pred             ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CCcEEEEECCCCceeE---Ee--cC
Q 006220          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLR---IM--AG  503 (656)
Q Consensus       430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~lwd~~~~~~~~---~~--~~  503 (656)
                      .+++........+...++...    ....-......++++.|+|+|+++++++. ...|.+|+......+.   ..  ..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~  190 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKN----VQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD  190 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEE----EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred             cCCCCcceeEeeeecceecCc----ccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecC
Confidence            544433322222211111110    00111122334789999999999888864 4578888765433221   11  12


Q ss_pred             CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEe-------------------cCCCCeEEEEEcCCCCEEE
Q 006220          504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFI-------------------GHRSMILSLAMSPDGRYMA  563 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~-------------------~h~~~i~~l~~sp~g~~L~  563 (656)
                      .......++|+|+++++++.. .+++|.+|++..+.......                   .+......+.++|+|++|+
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ly  270 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEE
Confidence            345688999999999987665 57899999987654322111                   1112356789999999998


Q ss_pred             EEEC------CCcEEEEeCCCCeeeEee------eCCCccEEEEEEcC-CCCEEEEEE-CCCcEEEEeCCCC
Q 006220          564 SGDE------DGTIMMWDLASGRCVTPL------MGHTSCVWTLAYSC-EGSLLASGS-ADCTVKLWDVTTS  621 (656)
Q Consensus       564 s~~~------dg~I~iwD~~~~~~~~~~------~~h~~~V~~l~~s~-~~~~l~sgs-~Dg~I~iWd~~~~  621 (656)
                      ++..      .+.|..|++.....+...      ........+++++| +|++|+++. .++.|.+|++...
T Consensus       271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            8642      223777877653222211      12234457799998 789776664 6789999998654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.10  E-value=3.8e-08  Score=98.17  Aligned_cols=226  Identities=9%  Similarity=0.048  Sum_probs=154.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  432 (656)
                      -+..++++|||+++++...++.|..|+-..                              ....+....+.+.+++|+++
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g------------------------------~~~~~~~~~~~~~gla~~~d   78 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG------------------------------NQQIHATVEGKVSGLAFTSN   78 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC------------------------------CEEEEEECSSEEEEEEECTT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC------------------------------CEEEEEcCCCCcceEEEcCC
Confidence            478899999999999998899887776432                              12233445677899999999


Q ss_pred             CCEEEEEeCCCeEEEEeccCCcee-EEe--eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-------
Q 006220          433 GDFILSSSADTTIRLWSTKLNANL-VCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-------  502 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~-~~~--~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-------  502 (656)
                      |+++++...++.+..|+....... ..+  .........+.+.++++++++.+.++.+..++...+.......       
T Consensus        79 G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  158 (302)
T d2p4oa1          79 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS  158 (302)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred             CCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcccee
Confidence            999898888888888887643321 111  2244567899999999999888888999888887664332221       


Q ss_pred             ---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeE---EEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          503 ---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV---RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       503 ---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~---~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                         ........+.+.. +..+++.+..+.|+.+++......   ..+. .......+++.++|++.++...++.|..++.
T Consensus       159 ~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p  236 (302)
T d2p4oa1         159 NSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAP  236 (302)
T ss_dssp             STTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             eccCcccccccccccC-CceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECC
Confidence               1122345566653 334555667888988887654322   2222 2334567999999998888888899999986


Q ss_pred             CCCe-eeEeeeCCCccEEEEEE---cCCCCEEEEEECC
Q 006220          577 ASGR-CVTPLMGHTSCVWTLAY---SCEGSLLASGSAD  610 (656)
Q Consensus       577 ~~~~-~~~~~~~h~~~V~~l~~---s~~~~~l~sgs~D  610 (656)
                      .... .+......-...++++|   ++|++.|..++..
T Consensus       237 ~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         237 DRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            4322 22233333456799999   6688877766544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.10  E-value=1.3e-09  Score=112.01  Aligned_cols=202  Identities=10%  Similarity=-0.028  Sum_probs=128.4

Q ss_pred             eEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220          354 LNCASISQDGSLVAGGF-SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~-~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  432 (656)
                      ..+++|||||++|+++. .++.|.+||+.....                            ......+.....   +...
T Consensus       126 p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~----------------------------~~~~~~~~~~~~---~~~~  174 (368)
T d1mdah_         126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----------------------------DQLTKSASCFHI---HPGA  174 (368)
T ss_dssp             TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----------------------------EEEEECSSCCCC---EEEE
T ss_pred             ccceEECCCCCEEEEEeCCCCeEEEEECCCCcE----------------------------eEEeeccCcceE---ccCC
Confidence            34689999999998875 579999999876321                            111222211110   1112


Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeEE------eeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--CC
Q 006220          433 GDFILSSSADTTIRLWSTKLNANLVC------YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GH  504 (656)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~------~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~~  504 (656)
                      ...+++.+.||++.+|+.........      ...+...+..+.+.+++..+.+.  .+.+++++...........  .+
T Consensus       175 ~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~  252 (368)
T d1mdah_         175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGN  252 (368)
T ss_dssp             TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSS
T ss_pred             CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccc
Confidence            23455556666666666554433221      12344455567777777666544  4566667665544333221  11


Q ss_pred             ----------CCCeeEEEEcCCCCEEEEEECC---------CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCC-E-EE
Q 006220          505 ----------LSDVDCVRWHINCNYIATGSSD---------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-Y-MA  563 (656)
Q Consensus       505 ----------~~~V~~v~~~p~~~~l~tgs~d---------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~-L~  563 (656)
                                ......++++|++..+++...+         ..|++||..+++.+..+.. ...+.+++|+|||+ + ++
T Consensus       253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~  331 (368)
T d1mdah_         253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEE
T ss_pred             cceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEE
Confidence                      1223467889998887665432         3599999999998887653 35688999999997 3 45


Q ss_pred             EEECCCcEEEEeCCCCeeeEeeeCCC
Q 006220          564 SGDEDGTIMMWDLASGRCVTPLMGHT  589 (656)
Q Consensus       564 s~~~dg~I~iwD~~~~~~~~~~~~h~  589 (656)
                      ++..|+.|.+||..+++.+.++....
T Consensus       332 s~~~~~~v~v~D~~tgk~~~~i~~g~  357 (368)
T d1mdah_         332 NSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             EETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             EeCCCCeEEEEECCCCCEEEEEECCC
Confidence            66778999999999999999887543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=1.1e-07  Score=92.34  Aligned_cols=221  Identities=13%  Similarity=0.092  Sum_probs=140.1

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCC-Cc--EEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSD-SS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~d-g~--I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      +......+...+|||||+.||..... +.  +.+.+...                             .....+..+.+.
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~   84 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-----------------------------GAVRQVASFPRH   84 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-----------------------------CCEEEEECCSSC
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeeccc-----------------------------CceeEEeeeecc
Confidence            34556778899999999999976543 33  33333321                             123345567788


Q ss_pred             EEEEEEccCCCEEEEEeC-CCeEEEEeccCC-ceeEEeeCCCccEEEEEEecCCCEEEEEE-CCC--cEEEEECCCCcee
Q 006220          424 VYSASFSPLGDFILSSSA-DTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDR--TARIWSMDRIQPL  498 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~-Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg--~i~lwd~~~~~~~  498 (656)
                      ..+..|+|+|+.++..+. ++...++..... .................+++++..++..+ .+|  .|.+.++..... 
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-  163 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-  163 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-
T ss_pred             cccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-
Confidence            899999999998876554 333333332222 22222233444455567777776655544 455  455556655433 


Q ss_pred             EEecCCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCcEE
Q 006220          499 RIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE---DGTIM  572 (656)
Q Consensus       499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~---dg~I~  572 (656)
                      .....+........|+|++..++..+.++   .+.+.|...+..  ....+........|||||++|+-.+.   ...|.
T Consensus       164 ~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~  241 (269)
T d2hqsa1         164 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLN  241 (269)
T ss_dssp             EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             eeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEE
Confidence            33444556677889999999988876554   455555555443  33345566788899999998876543   34688


Q ss_pred             EEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220          573 MWDLASGRCVTPLMGHTSCVWTLAYSCE  600 (656)
Q Consensus       573 iwD~~~~~~~~~~~~h~~~V~~l~~s~~  600 (656)
                      +|++..+. ...+....+.+...+|||-
T Consensus       242 ~~~~dg~~-~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         242 LVSTDGRF-KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEETTSCC-EEECCCSSSEEEEEEECCC
T ss_pred             EEECCCCC-EEEEeCCCCcEEeEEeCCC
Confidence            99997654 4556666778888999983

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.07  E-value=1.1e-07  Score=93.58  Aligned_cols=240  Identities=10%  Similarity=0.176  Sum_probs=163.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      -..++++++|+++++-..+..|++||.+..-.......  ..                     -.+....-..+++.++.
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~--~~---------------------~~~~~~~p~~~~~~~~~   81 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGEC--GK---------------------RDSQLLYPNRVAVVRNS   81 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCB--SS---------------------STTCBSSEEEEEEETTT
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEeccc--CC---------------------Ccccccccccccccccc
Confidence            57899999999988887889999998653111000000  00                     00111123344554443


Q ss_pred             C-EEEE-EeCCCeEEEEeccCCceeEEee-CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe--cCCCCCe
Q 006220          434 D-FILS-SSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM--AGHLSDV  508 (656)
Q Consensus       434 ~-~L~s-~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~--~~~~~~V  508 (656)
                      . .+++ .+.++.|..++.. +.....+. .......++++.++|.++++....+.+.+++.+. +.+..+  ..+....
T Consensus        82 ~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~  159 (279)
T d1q7fa_          82 GDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFP  159 (279)
T ss_dssp             TEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSE
T ss_pred             cccceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeeccccccccccc
Confidence            3 3333 3445677777764 44444443 2345677899999999888887778888888654 455554  3455678


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeeeEee
Q 006220          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~-dg~I~iwD~~~~~~~~~~  585 (656)
                      ..+++.++++.+++....+.|++||. +|+.+..+.  +.......|++.++|+++++-.. ++.|.+|+ .+|+.+..+
T Consensus       160 ~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~  237 (279)
T d1q7fa_         160 NGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISAL  237 (279)
T ss_dssp             EEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEE
T ss_pred             ceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEE
Confidence            88999999998888888899999995 567777663  23446789999999997776543 45799998 468877776


Q ss_pred             eCC--CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          586 MGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       586 ~~h--~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      ...  ....+.+++.++|.+++ ++.++.|++|.....
T Consensus       238 ~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         238 ESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             eCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence            432  34678999999997555 567899999998664

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.06  E-value=9e-08  Score=96.10  Aligned_cols=245  Identities=9%  Similarity=0.086  Sum_probs=156.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220          350 THNGLNCASISQDGSLVAGGFS-------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (656)
Q Consensus       350 ~~~~V~~l~fs~dg~~La~g~~-------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  422 (656)
                      .-...-.++|.++|++.++...       +|.|..|+..+.......                        ........+
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~------------------------~~~~~~~~g   71 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC------------------------KPEVNGYGG   71 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE------------------------CCEETTEEC
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEE------------------------CCccccCCC
Confidence            3445678899999998876533       355767765532110000                        000001113


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCC----ccEEEEEEecCCCEEEEEEC---------------
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN----YPVWDVQFNPQGHYFASSSH---------------  483 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~----~~V~~l~~sp~~~~l~sgs~---------------  483 (656)
                      .-..+.|.+++..++++...+.|..++.+............    ...+++++.++|++.++-..               
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence            35789999999988888777789888887543322211111    13578999999988777432               


Q ss_pred             CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCC----EE-EEEECCCcEEEEeCCCCeeEE---EEe---c-CCCCeE
Q 006220          484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN----YI-ATGSSDKTVRLWDVSSGECVR---IFI---G-HRSMIL  551 (656)
Q Consensus       484 Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~----~l-~tgs~dg~V~iwd~~~~~~~~---~~~---~-h~~~i~  551 (656)
                      .|.++.++.+ ++... +.......+.++|+|++.    +| ++-+..+.|+.||+.....+.   .+.   + +.....
T Consensus       152 ~G~v~~~~~d-g~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         152 FGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             CEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             CceEEEEeec-CceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence            2344444433 22222 223334457889988764    44 445677889999876432221   121   1 122356


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCC
Q 006220          552 SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTT  620 (656)
Q Consensus       552 ~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~  620 (656)
                      .|++.++|++.++....+.|.+||...+..+..+..+...+++++|.++++ ++++.+.+|.|...++..
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             eeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            799999999888888889999999888877777776667789999999987 456666778887777654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=3.9e-07  Score=88.22  Aligned_cols=203  Identities=18%  Similarity=0.192  Sum_probs=129.1

Q ss_pred             EeecCccCEEEEEEccCCCEEEEEeCCC---eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CCcEEE--
Q 006220          416 LYQGHSGPVYSASFSPLGDFILSSSADT---TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARI--  489 (656)
Q Consensus       416 ~l~~h~~~V~~l~~spd~~~L~s~s~Dg---~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~l--  489 (656)
                      .+..+...+.+.+|||||+.|+..+...   .+.+.+...+.. .....+........|+|+|..++.... ++...+  
T Consensus        33 ~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~  111 (269)
T d2hqsa1          33 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  111 (269)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceee
Confidence            3444567788999999999998665433   466666665544 344456778889999999999887663 333223  


Q ss_pred             EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCC--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~  566 (656)
                      +...... ...............+++.+..++..+ .+|  .|.+.++..+.... ...+........|+|+|+.++..+
T Consensus       112 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~  189 (269)
T d2hqsa1         112 MDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVS  189 (269)
T ss_dssp             EETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEEE
T ss_pred             ccccccc-ceeeeeccccccccccccccccceecccccCCceEeeeeccccccee-eecccccccccccccccceeEEEe
Confidence            3333222 222333444455566777776655444 455  45566666554433 344566777889999999888765


Q ss_pred             CCC-c--EEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCCc
Q 006220          567 EDG-T--IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA---DCTVKLWDVTTSTK  623 (656)
Q Consensus       567 ~dg-~--I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~---Dg~I~iWd~~~~~~  623 (656)
                      .++ .  |.+.|...+.  .....+........|||||+.|+-.+.   ...|++|++..+..
T Consensus       190 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         190 SNGGQQHIAKQDLATGG--VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             ECSSCEEEEEEETTTCC--EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             ecCCceeeeEeeccccc--ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            543 3  4444554443  334445566778899999998876553   34688999977553

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.95  E-value=1.6e-06  Score=86.89  Aligned_cols=233  Identities=9%  Similarity=0.068  Sum_probs=152.1

Q ss_pred             EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      .....-.+..++|.++|++.++-...+.|..|+....                            ...............
T Consensus        35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~----------------------------~~~~~~~~~~~~p~g   86 (319)
T d2dg1a1          35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK----------------------------EIKRPFVSHKANPAA   86 (319)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC----------------------------CEEEEEECSSSSEEE
T ss_pred             eccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCC----------------------------eEEEEEeCCCCCeeE
Confidence            3333445679999999998888878888888875531                            122223344556789


Q ss_pred             EEEccCCCEEEEEeCC----CeEEEEeccCCceeEEeeC--CCccEEEEEEecCCCEEEEEEC------CCcEEEEECCC
Q 006220          427 ASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSH------DRTARIWSMDR  494 (656)
Q Consensus       427 l~~spd~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~sgs~------Dg~i~lwd~~~  494 (656)
                      ++++++|+++++...+    +.|...+..+.........  -.....++.+.++|++.++...      .+.+..++.+.
T Consensus        87 la~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg  166 (319)
T d2dg1a1          87 IKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF  166 (319)
T ss_dssp             EEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             EEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc
Confidence            9999999877765432    3455555554443333322  1334778999999987666432      12355555443


Q ss_pred             CceeEEecCCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCC-eeEEE-------EecCCCCeEEEEEcCCCCEEEEE
Q 006220          495 IQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSG-ECVRI-------FIGHRSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~~-~~~~~-------~~~h~~~i~~l~~sp~g~~L~s~  565 (656)
                      . .+..+.......+.++|+|+++.|+.+ +..+.|+.||+... .....       ..........|++.++|++.++.
T Consensus       167 ~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         167 R-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             C-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             c-eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE
Confidence            3 333333334456789999999877554 56789999998632 21111       11112235679999999988888


Q ss_pred             ECCCcEEEEeCCCCeeeEeee------CCCccEEEEEEcCCCCEEEEEEC
Q 006220          566 DEDGTIMMWDLASGRCVTPLM------GHTSCVWTLAYSCEGSLLASGSA  609 (656)
Q Consensus       566 ~~dg~I~iwD~~~~~~~~~~~------~h~~~V~~l~~s~~~~~l~sgs~  609 (656)
                      ...+.|.+|| ..|+.+.++.      ++...+++++|.+++..+++...
T Consensus       246 ~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         246 YGQGRVLVFN-KRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             ETTTEEEEEC-TTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             cCCCEEEEEC-CCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            8899999999 4788888775      23446789999998877766554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.85  E-value=3.5e-07  Score=90.99  Aligned_cols=196  Identities=12%  Similarity=0.026  Sum_probs=139.8

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce-eEEe
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIM  501 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~-~~~~  501 (656)
                      .+..++++|||+++++...+++|..|+....  ...+......+.+++|+++|+++++...++.+..|+...... ...+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            5789999999999999999999988886633  333444566789999999999999988888888887654322 1222


Q ss_pred             --cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec----------CCCCeEEEEEcCCCCEEEEEECCC
Q 006220          502 --AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----------HRSMILSLAMSPDGRYMASGDEDG  569 (656)
Q Consensus       502 --~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~----------h~~~i~~l~~sp~g~~L~s~~~dg  569 (656)
                        .........+++.++++++++.+.++.+..+|...+........          .......+.++. +.++++.+..+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence              13445688999999999998888899999999887754433221          112345566653 34555666788


Q ss_pred             cEEEEeCCCCeeeEeee--CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          570 TIMMWDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       570 ~I~iwD~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      .|..+++..........  .......+++++++|+++++...++.|..|+....
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             eEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            88888876543322211  12234567999999998888888999999877543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.81  E-value=1.7e-07  Score=91.19  Aligned_cols=199  Identities=10%  Similarity=0.062  Sum_probs=134.5

Q ss_pred             cCEEEEEEccCCCEEEEE-eCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 006220          422 GPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~  500 (656)
                      ..-.+++++++|...++. +..+.|..++............-.....+++++++++++++....+.+++++..+...+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            345799999999966654 4557777777664433322222223457899999999887777767777665554443322


Q ss_pred             ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 006220          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (656)
Q Consensus       501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~  580 (656)
                      . .......++++.++++++++-..+..+..++...................++++++|+.+++...++.|..+|.....
T Consensus        94 ~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_          94 F-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             C-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             e-eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence            2 233567899999999988877777778888765543322222223456789999999988888888999999976554


Q ss_pred             eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220          581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       581 ~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      ........-.....++++++|.++++....+.|..++....
T Consensus       173 ~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         173 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            43332244456789999999998888888888888876544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.73  E-value=1.1e-05  Score=80.61  Aligned_cols=206  Identities=11%  Similarity=0.045  Sum_probs=137.2

Q ss_pred             CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC----CcEEEEECCCC
Q 006220          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRI  495 (656)
Q Consensus       420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D----g~i~lwd~~~~  495 (656)
                      ....+-+++|.++|++.++-...+.|..|+..+................++++++|+++++...+    +.+...+....
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            34456789999999987787788999999988776655555555667899999999887776432    33455555554


Q ss_pred             ceeEEecC--CCCCeeEEEEcCCCCEEEEEEC------CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-E
Q 006220          496 QPLRIMAG--HLSDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-D  566 (656)
Q Consensus       496 ~~~~~~~~--~~~~V~~v~~~p~~~~l~tgs~------dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~-~  566 (656)
                      ........  .....+.+++.++|++.++...      .+.+..++...+. +..+...-...+.|+|+|+++.|+.+ +
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecc
Confidence            44443332  2234678999999986666432      1345556554333 33332233456789999999876554 5


Q ss_pred             CCCcEEEEeCCCC-eeeEe-------eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          567 EDGTIMMWDLASG-RCVTP-------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       567 ~dg~I~iwD~~~~-~~~~~-------~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      ..+.|..||+... .....       ..........+++..+|++.++....+.|.+||- .++.+...
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i  264 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  264 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEE
Confidence            6789999998642 11111       1111234578999999999999889999999995 56655443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=3.8e-06  Score=88.70  Aligned_cols=239  Identities=13%  Similarity=0.145  Sum_probs=136.0

Q ss_pred             CeEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220          353 GLNCASISQDGSLVAGGFS---------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (656)
Q Consensus       353 ~V~~l~fs~dg~~La~g~~---------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  423 (656)
                      .+....||||+++++.++.         .+.+.|+|+.......                          +.......+.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~--------------------------l~~~~~~~~~  115 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS--------------------------LDPPEVSNAK  115 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE--------------------------CCCTTCCSCC
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee--------------------------ccCccCCccc
Confidence            4667789999999888743         4667888877532211                          1111112234


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee-CCCccE-----------------EEEEEecCCCEEEEEECC-
Q 006220          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPV-----------------WDVQFNPQGHYFASSSHD-  484 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V-----------------~~l~~sp~~~~l~sgs~D-  484 (656)
                      +....|||||+.++... ++.|.+.+..++..+.... +....|                 ..+.|||||.+||....| 
T Consensus       116 l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~  194 (465)
T d1xfda1         116 LQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND  194 (465)
T ss_dssp             CSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred             cceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecc
Confidence            55678999999988776 5679998887666544332 211111                 467799999999987532 


Q ss_pred             Cc---------------------------------EEEEECCCCceeEEec------CCCCCeeEEEEcCCCCEEEEEEC
Q 006220          485 RT---------------------------------ARIWSMDRIQPLRIMA------GHLSDVDCVRWHINCNYIATGSS  525 (656)
Q Consensus       485 g~---------------------------------i~lwd~~~~~~~~~~~------~~~~~V~~v~~~p~~~~l~tgs~  525 (656)
                      ..                                 +.++|+..+.......      ....-+..+.|+|+++.++....
T Consensus       195 s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~n  274 (465)
T d1xfda1         195 SRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN  274 (465)
T ss_dssp             TTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred             cccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEc
Confidence            22                                 3333433322211111      11112567899999886665432


Q ss_pred             -C---CcEEEEeCCCCeeEEEEecCC-CCe----EEEEEcCCCCEEE---EEECCC--cEEEEeCC------CCeeeEee
Q 006220          526 -D---KTVRLWDVSSGECVRIFIGHR-SMI----LSLAMSPDGRYMA---SGDEDG--TIMMWDLA------SGRCVTPL  585 (656)
Q Consensus       526 -d---g~V~iwd~~~~~~~~~~~~h~-~~i----~~l~~sp~g~~L~---s~~~dg--~I~iwD~~------~~~~~~~~  585 (656)
                       +   ..|.++|..+|++...+..+. +.|    ....|+|+|+.++   ....+|  .+...++.      .++.+..+
T Consensus       275 R~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~L  354 (465)
T d1xfda1         275 RAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI  354 (465)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS
T ss_pred             cccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEe
Confidence             2   258889999998876655322 222    3467999998432   222333  34433321      23334444


Q ss_pred             eCCCccEEEE-EEcCCCCEEE-EEECC--CcEEEEeC
Q 006220          586 MGHTSCVWTL-AYSCEGSLLA-SGSAD--CTVKLWDV  618 (656)
Q Consensus       586 ~~h~~~V~~l-~~s~~~~~l~-sgs~D--g~I~iWd~  618 (656)
                      ....-.|..+ .|+.+++.|. ++..+  +.-.+|.+
T Consensus       355 T~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v  391 (465)
T d1xfda1         355 TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA  391 (465)
T ss_dssp             CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred             ccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEE
Confidence            4444456664 6888776654 44433  23345554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.63  E-value=1.1e-05  Score=82.02  Aligned_cols=158  Identities=11%  Similarity=0.167  Sum_probs=105.2

Q ss_pred             cCEEEEEEccCCCEEEEEeC-CCeEEEEeccCCceeEE---e--eCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 006220          422 GPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVC---Y--KGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDR  494 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~-Dg~I~lwd~~~~~~~~~---~--~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~  494 (656)
                      ..+.++.|+|+|+++++++. ...|.+|+......+..   .  .........++|+|+++++++.. .+++|.+|+++.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            45789999999998887764 45788888664433221   1  12345678899999999886655 678999999876


Q ss_pred             CceeEEec-------------------CCCCCeeEEEEcCCCCEEEEEEC------CCcEEEEeCCCCeeEE-EE-----
Q 006220          495 IQPLRIMA-------------------GHLSDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVR-IF-----  543 (656)
Q Consensus       495 ~~~~~~~~-------------------~~~~~V~~v~~~p~~~~l~tgs~------dg~V~iwd~~~~~~~~-~~-----  543 (656)
                      .+......                   .+......+.++|+|++|+++..      .+.|..|++.....+. ..     
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            54322111                   11122457899999999988753      2237777775432221 11     


Q ss_pred             ecCCCCeEEEEEcC-CCCEEEEE-ECCCcEEEEeCCCC
Q 006220          544 IGHRSMILSLAMSP-DGRYMASG-DEDGTIMMWDLASG  579 (656)
Q Consensus       544 ~~h~~~i~~l~~sp-~g~~L~s~-~~dg~I~iwD~~~~  579 (656)
                      ........+++++| +|++|+++ ..++.|.+|++...
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            11234567799998 79988776 47789999987544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.57  E-value=2.4e-05  Score=76.20  Aligned_cols=195  Identities=11%  Similarity=0.159  Sum_probs=139.5

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC------CCccEEEEEEecCC-CEEEEE-ECCCcEEEEECCC
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG------HNYPVWDVQFNPQG-HYFASS-SHDRTARIWSMDR  494 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~------h~~~V~~l~~sp~~-~~l~sg-s~Dg~i~lwd~~~  494 (656)
                      ....++++++++.+++-..++.|++||.+ +..+..+..      ....-..+++.++. .++++. +.++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            45789999999988887788999999976 665555532      11234556666554 344433 345577777764 


Q ss_pred             CceeEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCcE
Q 006220          495 IQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTI  571 (656)
Q Consensus       495 ~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~dg~I  571 (656)
                      +.....+. ........+++.++++++++....+.+.+++. +++.+..+.  .+......+++.++|+.+++....+.|
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccce
Confidence            44555553 44566788999999998888887888988885 566666653  345678889999999998888888999


Q ss_pred             EEEeCCCCeeeEeee--CCCccEEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCC
Q 006220          572 MMWDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASGSA-DCTVKLWDVTTST  622 (656)
Q Consensus       572 ~iwD~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~sgs~-Dg~I~iWd~~~~~  622 (656)
                      .+||. .|+.+.++.  +......+++++++|+++++-+. ++.|.+|+- .++
T Consensus       181 ~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~  232 (279)
T d1q7fa_         181 KVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQ  232 (279)
T ss_dssp             EEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSC
T ss_pred             eeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCC
Confidence            99996 577776663  33456789999999998877554 456899884 344

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.54  E-value=8.7e-06  Score=81.09  Aligned_cols=197  Identities=9%  Similarity=0.098  Sum_probs=127.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC-ccCEEEEEEccC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH-SGPVYSASFSPL  432 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~~spd  432 (656)
                      -..++|+++++.|+++...+.|..++...........                 ..        .+. -.....+.+.++
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~-----------------~~--------~g~~~~~pndl~~d~~  127 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKK-----------------DS--------EGRRMQGCNDCAFDYE  127 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSB-----------------CT--------TSCBCBCCCEEEECTT
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEec-----------------cc--------cccccCCCcEEEECCC
Confidence            5679999999988888777778888865421110000                 00        000 113467888999


Q ss_pred             CCEEEEEeC---------------CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-----EEEEEECCCcEEEEEC
Q 006220          433 GDFILSSSA---------------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-----YFASSSHDRTARIWSM  492 (656)
Q Consensus       433 ~~~L~s~s~---------------Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-----~l~sgs~Dg~i~lwd~  492 (656)
                      |++.++-..               .|.|..++.+ ++..... ..-..-..++|+|++.     ++++-+..+.|..|++
T Consensus       128 G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~  205 (314)
T d1pjxa_         128 GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDI  205 (314)
T ss_dssp             SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEE
T ss_pred             CCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeec
Confidence            887776432               2344444443 3322222 2223346899999764     4445567788998887


Q ss_pred             CCCceeE------EecC-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEE-EE
Q 006220          493 DRIQPLR------IMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-AS  564 (656)
Q Consensus       493 ~~~~~~~------~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L-~s  564 (656)
                      .....+.      .+.+ +......+++..+|+..++....+.|.+||...+..+..+.......++++|.|+++.| ++
T Consensus       206 ~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt  285 (314)
T d1pjxa_         206 KGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             EETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             cCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEE
Confidence            6433222      1111 22345689999999988888888999999998888777777666778999999999754 55


Q ss_pred             EECCCcEEEEeCC
Q 006220          565 GDEDGTIMMWDLA  577 (656)
Q Consensus       565 ~~~dg~I~iwD~~  577 (656)
                      .+.+|.|.-.++.
T Consensus       286 ~~~~g~i~~~~~~  298 (314)
T d1pjxa_         286 EHENNAVWKFEWQ  298 (314)
T ss_dssp             ETTTTEEEEEECS
T ss_pred             ECCCCcEEEEECC
Confidence            5677888888764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.50  E-value=6.7e-05  Score=73.68  Aligned_cols=219  Identities=10%  Similarity=0.034  Sum_probs=146.8

Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          355 NCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       355 ~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      -+..|++ ++.+..+-...+.|.-||..+.                             .... ......+.++++.+++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g-----------------------------~~~~-~~~~~~~~~i~~~~dg   70 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASG-----------------------------RKTV-HALPFMGSALAKISDS   70 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTT-----------------------------EEEE-EECSSCEEEEEEEETT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCC-----------------------------eEEE-EECCCCcEEEEEecCC
Confidence            4556776 4555556556788888886641                             1111 1234567889999888


Q ss_pred             CEEEEEeCCCeEEEEeccCCceeEEeeC----CCccEEEEEEecCCCEEEEEEC----CCcEEEEECCCCceeEEecCCC
Q 006220          434 DFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSH----DRTARIWSMDRIQPLRIMAGHL  505 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~l~~sp~~~~l~sgs~----Dg~i~lwd~~~~~~~~~~~~~~  505 (656)
                      .++++ +.+ .|.++|..+++.......    ....++++.+.|+|++.++...    .+.-.+|.+..++...... ..
T Consensus        71 ~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~  147 (295)
T d2ghsa1          71 KQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DI  147 (295)
T ss_dssp             EEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EE
T ss_pred             CEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-cc
Confidence            76665 444 599999998865433321    1235789999999987666542    2345667666665544443 33


Q ss_pred             CCeeEEEEcCCCCEEEE-EECCCcEEEEeCCCC------ee--EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220          506 SDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSG------EC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (656)
Q Consensus       506 ~~V~~v~~~p~~~~l~t-gs~dg~V~iwd~~~~------~~--~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~  576 (656)
                      ...+.++|+++++.++. .+..+.|+.|++...      +.  ...+.+..+....+++..+|++.++.-..|.|..|| 
T Consensus       148 ~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-  226 (295)
T d2ghsa1         148 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-  226 (295)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-
T ss_pred             CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-
Confidence            45678999999987654 455778998887421      11  112223445678899999999888877888999999 


Q ss_pred             CCCeeeEeeeCCCccEEEEEEc-CCCCEEEEE
Q 006220          577 ASGRCVTPLMGHTSCVWTLAYS-CEGSLLASG  607 (656)
Q Consensus       577 ~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~sg  607 (656)
                      ..|+.+..+.-....+++++|- ++.+.|+..
T Consensus       227 p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         227 TDGNHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             TTCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             CCCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence            5789998887766789999995 565555443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3e-06  Score=89.48  Aligned_cols=219  Identities=11%  Similarity=0.061  Sum_probs=133.7

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEE
Q 006220          358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL  437 (656)
Q Consensus       358 ~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~  437 (656)
                      .|.+++.++.. ..+|.|.+|++.+........                         ...-..-.+....||||+++++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~-------------------------~~~~~~~~~~~~~~SpD~~~vl   76 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIE-------------------------GKKIESLRAIRYEISPDREYAL   76 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEEC-------------------------TTTTTTTTCSEEEECTTSSEEE
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEc-------------------------CccccccccceeEECCCCCeEE
Confidence            47777776643 367889999987532211100                         0000123456678999999887


Q ss_pred             EEe---------CCCeEEEEeccCCceeEEee--CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC-C
Q 006220          438 SSS---------ADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH-L  505 (656)
Q Consensus       438 s~s---------~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~-~  505 (656)
                      ...         ..+.+.++|+.++.......  .....+....|||+|+.+|... ++.|++.+...+..++..... .
T Consensus        77 ~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~  155 (465)
T d1xfda1          77 FSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKE  155 (465)
T ss_dssp             EEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBT
T ss_pred             EEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCc
Confidence            653         35788999999876543322  2334566688999999998876 578888888777666555422 1


Q ss_pred             CC-----------------eeEEEEcCCCCEEEEEEC-CCcE---------------------------------EEEeC
Q 006220          506 SD-----------------VDCVRWHINCNYIATGSS-DKTV---------------------------------RLWDV  534 (656)
Q Consensus       506 ~~-----------------V~~v~~~p~~~~l~tgs~-dg~V---------------------------------~iwd~  534 (656)
                      +.                 -.++.|+|+|++||.... +..|                                 .++|+
T Consensus       156 ~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~  235 (465)
T d1xfda1         156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL  235 (465)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred             ceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEec
Confidence            11                 246789999999998653 2223                                 33343


Q ss_pred             CCCeeEEEEe------cCCCCeEEEEEcCCCCEEEEEEC-C---CcEEEEeCCCCeeeEeeeCCC-cc----EEEEEEcC
Q 006220          535 SSGECVRIFI------GHRSMILSLAMSPDGRYMASGDE-D---GTIMMWDLASGRCVTPLMGHT-SC----VWTLAYSC  599 (656)
Q Consensus       535 ~~~~~~~~~~------~h~~~i~~l~~sp~g~~L~s~~~-d---g~I~iwD~~~~~~~~~~~~h~-~~----V~~l~~s~  599 (656)
                      .++.......      .....+..+.|+|++++++.... +   ..|.++|..+|++...+..+. +.    -....|++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~  315 (465)
T d1xfda1         236 NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK  315 (465)
T ss_dssp             SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT
T ss_pred             CCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc
Confidence            3332211110      11123677899999987666432 2   258889999987665543221 11    12356888


Q ss_pred             CCCE
Q 006220          600 EGSL  603 (656)
Q Consensus       600 ~~~~  603 (656)
                      +|+.
T Consensus       316 dg~~  319 (465)
T d1xfda1         316 DGRK  319 (465)
T ss_dssp             TSCS
T ss_pred             CCCe
Confidence            8874

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.43  E-value=6.7e-06  Score=79.35  Aligned_cols=229  Identities=14%  Similarity=0.093  Sum_probs=127.6

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCE
Q 006220          358 SISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (656)
Q Consensus       358 ~fs~d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~  435 (656)
                      ..|||  |+.+|.. .+|.|.+.++...                             ..+.+..+.+.+...+|||||+.
T Consensus         5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~g-----------------------------~~~~Lt~~~~~~~~p~~SPDG~~   54 (281)
T d1k32a2           5 LLNPDIHGDRIIFV-CCDDLWEHDLKSG-----------------------------STRKIVSNLGVINNARFFPDGRK   54 (281)
T ss_dssp             CEEEEEETTEEEEE-ETTEEEEEETTTC-----------------------------CEEEEECSSSEEEEEEECTTSSE
T ss_pred             ccCCCCCCCEEEEE-eCCcEEEEECCCC-----------------------------CEEEEecCCCcccCEEECCCCCE
Confidence            35788  9998866 4566777777641                             22345667778899999999998


Q ss_pred             EEEEeC-C-----CeEEEEeccCCceeEEee------CCCccEEEEEEecCCCEEEEEECC------CcEEEEECCCCce
Q 006220          436 ILSSSA-D-----TTIRLWSTKLNANLVCYK------GHNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQP  497 (656)
Q Consensus       436 L~s~s~-D-----g~I~lwd~~~~~~~~~~~------~h~~~V~~l~~sp~~~~l~sgs~D------g~i~lwd~~~~~~  497 (656)
                      |+..+. +     +.|.+++..++.......      ..........|+|+|+.++.....      ..+...+.+....
T Consensus        55 iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  134 (281)
T d1k32a2          55 IAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF  134 (281)
T ss_dssp             EEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred             EEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence            885532 2     247777777665443211      122345678999999998876432      2344555554433


Q ss_pred             eEEecCCCCCeeEEEEcCCCCEEEEEECCC-----------cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDK-----------TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg-----------~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~  566 (656)
                      ...   +........+.+.+..++......           ....+......... ...+........++++. .+....
T Consensus       135 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~  209 (281)
T d1k32a2         135 VPL---NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK-IVDMSTHVSSPVIVGHR-IYFITD  209 (281)
T ss_dssp             EEC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE-EECCSSCCEEEEEETTE-EEEEEC
T ss_pred             EEe---cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceee-ccCCccccceeeeeccc-cceecc
Confidence            222   223333444444444444332221           11222222222222 23333445555666553 223332


Q ss_pred             C--CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220          567 E--DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (656)
Q Consensus       567 ~--dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~  624 (656)
                      .  ...|.++|+..+.. ..+..+.. .....|+|||+.|+.. .++.|+++|+.+++..
T Consensus       210 ~~~~~~l~~~d~~g~~~-~~lt~~~~-~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         210 IDGFGQIYSTDLDGKDL-RKHTSFTD-YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             TTSSCEEEEEETTSCSC-EECCCCCS-SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred             cccccceEEEeCCCCce-EEeecCCC-cccccCcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence            2  33577788866543 33333321 1234689999987764 4688999999887654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=0.0023  Score=61.06  Aligned_cols=207  Identities=8%  Similarity=-0.035  Sum_probs=135.6

Q ss_pred             eecCccCEEEEEEccCCCEEEEE-eCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEE-EEECCCcEEEEECCC
Q 006220          417 YQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWSMDR  494 (656)
Q Consensus       417 l~~h~~~V~~l~~spd~~~L~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-sgs~Dg~i~lwd~~~  494 (656)
                      +..+...+.+++|.+.++.++-+ ..++.|+..+++..............+.++++..-+..+. +-...+.|.+.+++.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            33445568889999877766654 5568899988886655544444445678899987555555 445678999999987


Q ss_pred             CceeEEecCCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCc
Q 006220          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGT  570 (656)
Q Consensus       495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~  570 (656)
                      ......+......+..++.+|...+++..... +  .|.--++............-.....|++.+.++.|+.+ ...+.
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~  190 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR  190 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCE
Confidence            66555555555678999999988777755432 2  34444555444433333333567899999887777555 46778


Q ss_pred             EEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       571 I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      |...|+........+.+... ..++++. ++.+..+-...+.|...|..++....
T Consensus       191 I~~~~~~g~~~~~v~~~~~~-P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~  243 (263)
T d1npea_         191 AECLNPAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMD  243 (263)
T ss_dssp             EEEEETTEEEEEEEEECCCS-EEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCeEEEECCCCC-cEEEEEE-CCEEEEEECCCCEEEEEECCCCccce
Confidence            99999865544333444333 4578775 34444444466888888888776543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.12  E-value=0.0014  Score=63.89  Aligned_cols=196  Identities=11%  Similarity=0.053  Sum_probs=132.1

Q ss_pred             EEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC-
Q 006220          426 SASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG-  503 (656)
Q Consensus       426 ~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~-  503 (656)
                      +..|++... +..+--..+.|..||..++... .+. ....+.++++.++|.++++ +.+ -+.++|..+++....... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            456887554 4445446788999999877543 333 3456889999998876654 454 588999988875544331 


Q ss_pred             ---CCCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEe
Q 006220          504 ---HLSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWD  575 (656)
Q Consensus       504 ---~~~~V~~v~~~p~~~~l~tgs~----dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iwD  575 (656)
                         ....++.+.+.|+|++.++...    .+.-.+|.+..++....+... .....++|+++++.++.+ +..+.|..++
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~-~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI-SIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE-SSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc-CCcceeeecCCCceEEEeecccceeeEee
Confidence               1234788899999987766542    234566777777666555443 456789999999866554 5677888888


Q ss_pred             CCCC------e--eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          576 LASG------R--CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       576 ~~~~------~--~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                      +...      +  ......+..+....+++..+|++.++.-..+.|..||- .++.....
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i  235 (295)
T d2ghsa1         177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY  235 (295)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred             ecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEe
Confidence            7421      1  11222334466789999999998888778889999995 45554433

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=0.012  Score=55.89  Aligned_cols=218  Identities=9%  Similarity=0.051  Sum_probs=138.0

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220          352 NGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (656)
Q Consensus       352 ~~V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  430 (656)
                      ..+.+++|.+..+.|... ...+.|+..++.....                            ..........+.++++.
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~----------------------------~~v~~~~~~~p~~iAvD   87 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----------------------------TTIIRQDLGSPEGIALD   87 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----------------------------EEEECTTCCCEEEEEEE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc----------------------------EEEEEeccccccEEEEe
Confidence            347889998877766554 4567787777764211                            11122223467888988


Q ss_pred             cCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC-C--cEEEEECCCCceeEEecCCCC
Q 006220          431 PLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-R--TARIWSMDRIQPLRIMAGHLS  506 (656)
Q Consensus       431 pd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D-g--~i~lwd~~~~~~~~~~~~~~~  506 (656)
                      .-+..|. +-...+.|.+.+++...+.......-.....+++.|...+++..... +  .|..-+++.............
T Consensus        88 ~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~  167 (263)
T d1npea_          88 HLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG  167 (263)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred             ccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccc
Confidence            7666665 54567799999998665544444444568899999977666544322 2  355556666555555544456


Q ss_pred             CeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220          507 DVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (656)
Q Consensus       507 ~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~  585 (656)
                      ....+++.+.++.|+.+ ...+.|...|+........+.+... ...|++. ++.+..+-...+.|...|..+++.+..+
T Consensus       168 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEE
Confidence            67899999887777655 4567899999876555445554433 4577775 3334444446788999999888877665


Q ss_pred             eCC-CccEEEEEEcC
Q 006220          586 MGH-TSCVWTLAYSC  599 (656)
Q Consensus       586 ~~h-~~~V~~l~~s~  599 (656)
                      ..+ .....+++..+
T Consensus       246 ~~~~~~~~~gi~v~~  260 (263)
T d1npea_         246 HPHKQTRLYGITIAL  260 (263)
T ss_dssp             CCSSCCCCCCEEEEC
T ss_pred             CCCCCCCcceEEEeC
Confidence            432 23444555543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.86  E-value=0.00025  Score=67.71  Aligned_cols=209  Identities=13%  Similarity=0.072  Sum_probs=106.4

Q ss_pred             EEEEeeCCCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220          344 FYTFINTHNGLNCASISQDGSLVAGGFS-DS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (656)
Q Consensus       344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~-dg-----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  417 (656)
                      ...+..+.+.+...+|||||+.||.... ++     .|.+++...........                      .-...
T Consensus        33 ~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~----------------------~~~~~   90 (281)
T d1k32a2          33 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY----------------------FSGKS   90 (281)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC----------------------CCEEE
T ss_pred             EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee----------------------cCCCc
Confidence            3345566778899999999999986532 22     24444444321111000                      00011


Q ss_pred             ecCccCEEEEEEccCCCEEEEEeCC------CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC------
Q 006220          418 QGHSGPVYSASFSPLGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR------  485 (656)
Q Consensus       418 ~~h~~~V~~l~~spd~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg------  485 (656)
                      ...........|+|+|+.|+.....      ..+...+...+....   .+........+.+.+..++......      
T Consensus        91 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (281)
T d1k32a2          91 TGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP---LNLGPATHILFADGRRVIGRNTFELPHWKGY  167 (281)
T ss_dssp             ETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE---CCSCSCSEEEEETTEEEEEESCSCCTTSTTC
T ss_pred             cCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE---ecCCccceeeecCCCeEEEeeccccceeeee
Confidence            1223445678999999988865432      234555555443322   1222333333333333333332211      


Q ss_pred             -----cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC--CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC
Q 006220          486 -----TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSGECVRIFIGHRSMILSLAMSPD  558 (656)
Q Consensus       486 -----~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d--g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~  558 (656)
                           ....+.......... ..+........+.++. .+.....+  ..|.++|+.++...+ +..+.. .....||||
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~-~~~~~~SpD  243 (281)
T d1k32a2         168 RGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRK-HTSFTD-YYPRHLNTD  243 (281)
T ss_dssp             CSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEE-CCCCCS-SCEEEEEES
T ss_pred             ccCCcceeeeeccccceeec-cCCccccceeeeeccc-cceecccccccceEEEeCCCCceEE-eecCCC-cccccCcCC
Confidence                 112222222222222 2233444455555543 22333333  357788887766544 332222 233468999


Q ss_pred             CCEEEEEECCCcEEEEeCCCCeee
Q 006220          559 GRYMASGDEDGTIMMWDLASGRCV  582 (656)
Q Consensus       559 g~~L~s~~~dg~I~iwD~~~~~~~  582 (656)
                      |+.|+.. .+|.|+++|+.+++..
T Consensus       244 G~~I~f~-~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         244 GRRILFS-KGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             SSCEEEE-ETTEEEEECTTTCCEE
T ss_pred             CCEEEEE-eCCEEEEEECCCCCEE
Confidence            9988764 4688999999887654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=0.021  Score=54.12  Aligned_cols=206  Identities=8%  Similarity=-0.070  Sum_probs=130.2

Q ss_pred             cCccCEEEEEEccCCCEEEEE-eCCCeEEEEeccCCc----eeEEeeCCCccEEEEEEecCCCEEEEE-ECCCcEEEEEC
Q 006220          419 GHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSM  492 (656)
Q Consensus       419 ~h~~~V~~l~~spd~~~L~s~-s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~Dg~i~lwd~  492 (656)
                      .....+.++.|++..+.|+-. ...+.|.-.+++...    ...........+.++++.+.+..+..+ ...++|.+.++
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            344567789999887766654 456677777665321    112222233456678888755555444 56678999999


Q ss_pred             CCCceeEEecCCCCCeeEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-ECCC
Q 006220          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDG  569 (656)
Q Consensus       493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs--~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg  569 (656)
                      +.................++.+|...+|+...  ..+.|...++............-.....+++.+.++.|+.+ ...+
T Consensus       107 ~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~  186 (266)
T d1ijqa1         107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (266)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcC
Confidence            88776666666667789999999766666544  34467777765444444333334567899999987766665 5567


Q ss_pred             cEEEEeCCCCeeeEeeeCC--CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220          570 TIMMWDLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (656)
Q Consensus       570 ~I~iwD~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~  625 (656)
                      .|...|+............  .....++++. ++.+..+-..++.|...+..++....
T Consensus       187 ~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~  243 (266)
T d1ijqa1         187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN  243 (266)
T ss_dssp             EEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             EEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceE
Confidence            8998898654433333222  2345678776 34445554577888888877766543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.69  E-value=0.0035  Score=62.92  Aligned_cols=192  Identities=14%  Similarity=0.124  Sum_probs=124.6

Q ss_pred             EEEEcc---CCCEEEEEe-CCCeEEEEeccCCceeEEeeC-CCccEEEEEEe--cCCCEEEEEECCC-------------
Q 006220          426 SASFSP---LGDFILSSS-ADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFN--PQGHYFASSSHDR-------------  485 (656)
Q Consensus       426 ~l~~sp---d~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~s--p~~~~l~sgs~Dg-------------  485 (656)
                      .+++..   ||++|+... .+++|.+.|+++.++...... ....+..++..  |+..|++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455644   788877665 678999999999988654433 23456666664  4566787777632             


Q ss_pred             -----cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCC---------------------------------
Q 006220          486 -----TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK---------------------------------  527 (656)
Q Consensus       486 -----~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---------------------------------  527 (656)
                           .+.++|.++.+....+.. .+....+.++++|+++++.+.+.                                 
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 356788888776665553 24577899999999999887431                                 


Q ss_pred             -----cEEEEeCCC--C-eeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCe-----------eeEeeeC
Q 006220          528 -----TVRLWDVSS--G-ECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGR-----------CVTPLMG  587 (656)
Q Consensus       528 -----~V~iwd~~~--~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~-----------~~~~~~~  587 (656)
                           .+.+-|.+.  + ..++.+... .....+.++|||+++++++ .+.++.++|++.-.           .+..-..
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             cEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence                 223333332  1 112222211 2245689999999988765 78899999986321           1111111


Q ss_pred             CCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       588 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                      ..-....-+|+..|....|---|..|.-|++.
T Consensus       327 lglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             cCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            22334567899888777777799999999985

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.025  Score=53.66  Aligned_cols=216  Identities=10%  Similarity=0.045  Sum_probs=132.5

Q ss_pred             eeCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220          348 INTHNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (656)
Q Consensus       348 ~~~~~~V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  426 (656)
                      ......+..++|++..+.|.-. ...+.|.-.++.....                        ...........-..+.+
T Consensus        26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~------------------------~~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1          26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------------------------VSSYDTVISRDIQAPDG   81 (266)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCCCE
T ss_pred             eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCC------------------------CcceEEEEeCCCCCcce
Confidence            3445567889999877766554 3455566555543110                        00111122222345667


Q ss_pred             EEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE--CCCcEEEEECCCCceeEEecC
Q 006220          427 ASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       427 l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs--~Dg~i~lwd~~~~~~~~~~~~  503 (656)
                      +++.+.+..|. +-...+.|.+.+++.................+++.|...++....  ..+.|...+++..........
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~  161 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  161 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc
Confidence            88877666555 445667899999987666555555556678999998655554443  345677778876655555554


Q ss_pred             CCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCeeEEEEecCC--CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 006220          504 HLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (656)
Q Consensus       504 ~~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~~~~~~~~~~h~--~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~  580 (656)
                      .......+++.+.++.|+.+ ...+.|...|+.............  .....|++. ++....+-..++.|.-.+..++.
T Consensus       162 ~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCc
Confidence            55667899999887777665 456789999987655444443332  235567766 23344444466788887877776


Q ss_pred             eeEeeeCC
Q 006220          581 CVTPLMGH  588 (656)
Q Consensus       581 ~~~~~~~h  588 (656)
                      ....+...
T Consensus       241 ~~~~~~~~  248 (266)
T d1ijqa1         241 DVNLLAEN  248 (266)
T ss_dssp             CCEEEECS
T ss_pred             ceEEEEcC
Confidence            65555443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.44  E-value=0.0046  Score=62.02  Aligned_cols=145  Identities=12%  Similarity=0.118  Sum_probs=97.9

Q ss_pred             CCCEEEEEE-CCCcEEEEECCCCceeEEec-CCCCCeeEEEEc--CCCCEEEEEECCC------------------cEEE
Q 006220          474 QGHYFASSS-HDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWH--INCNYIATGSSDK------------------TVRL  531 (656)
Q Consensus       474 ~~~~l~sgs-~Dg~i~lwd~~~~~~~~~~~-~~~~~V~~v~~~--p~~~~l~tgs~dg------------------~V~i  531 (656)
                      ||+++++.. .+.+|.+.|+++.++..++. .....+..+...  |+..|+++++.+.                  .+..
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            688877766 77899999999998876554 234556666654  5777888877632                  3677


Q ss_pred             EeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC---------------cEEEEeC--------------------
Q 006220          532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---------------TIMMWDL--------------------  576 (656)
Q Consensus       532 wd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg---------------~I~iwD~--------------------  576 (656)
                      +|..+.+........ +....+.++++|+++++.+.+.               .+.++++                    
T Consensus       178 ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V  256 (459)
T d1fwxa2         178 VDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  256 (459)
T ss_dssp             EETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence            899888877665532 3566789999999999877431               1333333                    


Q ss_pred             ---CC--C-eeeEeeeCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 006220          577 ---AS--G-RCVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT  620 (656)
Q Consensus       577 ---~~--~-~~~~~~~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~  620 (656)
                         +.  + ..+..+... .....+.++|||+++++++ .+.++.|+|+..
T Consensus       257 VD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         257 VDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             EECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             ecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence               21  1 111111111 2235689999999987766 688999999965

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.34  E-value=0.018  Score=57.17  Aligned_cols=73  Identities=10%  Similarity=0.092  Sum_probs=48.6

Q ss_pred             EEEEEEccCCCEEEEEeCC-CeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECC------CcEEEEECCCC
Q 006220          424 VYSASFSPLGDFILSSSAD-TTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRI  495 (656)
Q Consensus       424 V~~l~~spd~~~L~s~s~D-g~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~D------g~i~lwd~~~~  495 (656)
                      ..+..+.+++.+++.|+.+ .++.+||..+..-...-.. ....-.+.+..++|.+++.|+.+      ..+.+||..+.
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            3456788999999888765 5799999887654321111 11112356777799999988743      36889998764


Q ss_pred             c
Q 006220          496 Q  496 (656)
Q Consensus       496 ~  496 (656)
                      +
T Consensus       158 ~  158 (387)
T d1k3ia3         158 T  158 (387)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.28  E-value=0.12  Score=52.41  Aligned_cols=240  Identities=13%  Similarity=0.172  Sum_probs=130.8

Q ss_pred             eEEEEEcCCCCEEEEEeC-CC----cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220          354 LNCASISQDGSLVAGGFS-DS----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~-dg----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  428 (656)
                      +...++|||++++|.+-. +|    .|+++|+.++...                          . ..+.  ......+.
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~--------------------------~-~~i~--~~~~~~~~  177 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL--------------------------P-DVLE--RVKFSCMA  177 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE--------------------------E-EEEE--EECSCCEE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceec--------------------------c-cccc--cccccceE
Confidence            345578999999997633 33    5899998862210                          0 0111  11124578


Q ss_pred             EccCCCEEEEEeCC----------------CeEEEEeccCCce--eEEeeCCC--ccEEEEEEecCCCEEEEEEC---CC
Q 006220          429 FSPLGDFILSSSAD----------------TTIRLWSTKLNAN--LVCYKGHN--YPVWDVQFNPQGHYFASSSH---DR  485 (656)
Q Consensus       429 ~spd~~~L~s~s~D----------------g~I~lwd~~~~~~--~~~~~~h~--~~V~~l~~sp~~~~l~sgs~---Dg  485 (656)
                      |++|++.|+....+                ..|..|.+.+...  ...+....  ..+..+..++++.+++....   ++
T Consensus       178 W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~  257 (430)
T d1qfma1         178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP  257 (430)
T ss_dssp             ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred             EcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCc
Confidence            99999987654432                2577777766533  34444433  34667778899998765432   33


Q ss_pred             cEEEE--ECCCCc--------eeEEecCCCCCeeEEEEcCCCCEEEEEE---CCCcEEEEeCCCCee--EEEEe-cCCCC
Q 006220          486 TARIW--SMDRIQ--------PLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSSGEC--VRIFI-GHRSM  549 (656)
Q Consensus       486 ~i~lw--d~~~~~--------~~~~~~~~~~~V~~v~~~p~~~~l~tgs---~dg~V~iwd~~~~~~--~~~~~-~h~~~  549 (656)
                      ...+|  ++....        ....+......+..+. +.++.+++...   .++.|...++.....  ...+. .+...
T Consensus       258 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~  336 (430)
T d1qfma1         258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD  336 (430)
T ss_dssp             CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSC
T ss_pred             cEEEEEeeCCCcccccccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcc
Confidence            44444  443211        1222332223333322 23333333332   235676777665432  23333 34444


Q ss_pred             eEEEEEcCCCCEEEEE-ECCC--cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEE-EEEE---CCCcEEEEeCCCCC
Q 006220          550 ILSLAMSPDGRYMASG-DEDG--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL-ASGS---ADCTVKLWDVTTST  622 (656)
Q Consensus       550 i~~l~~sp~g~~L~s~-~~dg--~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~sgs---~Dg~I~iWd~~~~~  622 (656)
                      +..-.++..+.+|+.. ..++  .|+++++..+..........+.|..+...+++..+ ++.+   .-.++.-+|+.+++
T Consensus       337 ~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         337 VLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             eeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            5444444445566554 4554  58899998887655544445667666666655543 3322   23678889998875


Q ss_pred             c
Q 006220          623 K  623 (656)
Q Consensus       623 ~  623 (656)
                      .
T Consensus       417 ~  417 (430)
T d1qfma1         417 L  417 (430)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.94  E-value=0.17  Score=47.74  Aligned_cols=227  Identities=11%  Similarity=0.170  Sum_probs=141.8

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCE
Q 006220          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (656)
Q Consensus       356 ~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~  435 (656)
                      +.-.+|..+.||.-+ ...++|+|++...                            ...... ...+|.--.|-.+ +.
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~----------------------------klks~~-~~e~VvfWkWis~-~~  115 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKS----------------------------KMKAHT-MTDDVTFWKWISL-NT  115 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTE----------------------------EEEEEE-CSSCCCEEEESSS-SE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhh----------------------------hhceEE-cCCCcEEEEecCC-CE
Confidence            344568888887765 5579999998622                            222222 2345666677643 44


Q ss_pred             EEEEeCCCeEEEEeccCC-ceeEEeeCC----CccEEEEEEecCCCEEEEEE-------CCCcEEEEECCCCceeEEecC
Q 006220          436 ILSSSADTTIRLWSTKLN-ANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAG  503 (656)
Q Consensus       436 L~s~s~Dg~I~lwd~~~~-~~~~~~~~h----~~~V~~l~~sp~~~~l~sgs-------~Dg~i~lwd~~~~~~~~~~~~  503 (656)
                      |+..+. ..|+-|+++.. .+...+..|    ...|-.-..+++.++++..|       -.|.+.+|+.+.. ..+.+.|
T Consensus       116 L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieG  193 (327)
T d1utca2         116 VALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG  193 (327)
T ss_dssp             EEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECC
T ss_pred             EEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccc
Confidence            554443 47999999643 345555544    34576777788888876654       2367889998864 4556777


Q ss_pred             CCCCeeEEEEcCCC---CEEEEE---ECCCcEEEEeCCCCe---e------EEEEecC---CCCeEEEEEcCCCCEEEEE
Q 006220          504 HLSDVDCVRWHINC---NYIATG---SSDKTVRLWDVSSGE---C------VRIFIGH---RSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       504 ~~~~V~~v~~~p~~---~~l~tg---s~dg~V~iwd~~~~~---~------~~~~~~h---~~~i~~l~~sp~g~~L~s~  565 (656)
                      |......+...-+.   ..++.+   ...+.+++.++....   .      +..+...   ..-..+|..|+....++.-
T Consensus       194 haa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi  273 (327)
T d1utca2         194 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  273 (327)
T ss_dssp             SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred             eeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence            75444443332111   233332   233678888885421   1      1111111   2345678899988899999


Q ss_pred             ECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEE
Q 006220          566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL  615 (656)
Q Consensus       566 ~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i  615 (656)
                      +.-|.|.+||+.++.++..-+-....|...+-+.+..-+++...+|.|.-
T Consensus       274 TK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         274 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             ecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence            99999999999999999877666666665555555455666667776643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.58  E-value=0.17  Score=53.24  Aligned_cols=188  Identities=13%  Similarity=0.078  Sum_probs=117.0

Q ss_pred             CCeEEEEeccCCceeEEeeCC-------------------------------------CccEE-EEEEecCCCEEEEEEC
Q 006220          442 DTTIRLWSTKLNANLVCYKGH-------------------------------------NYPVW-DVQFNPQGHYFASSSH  483 (656)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h-------------------------------------~~~V~-~l~~sp~~~~l~sgs~  483 (656)
                      .|.|+-+|+.+++.+..+...                                     ...+| ..++.+....++.+..
T Consensus       175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg  254 (571)
T d2ad6a1         175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence            678999999999988765422                                     11232 2456666666665543


Q ss_pred             ----------------CCcEEEEECCCCceeEEecCCCCCee---------EEEEcCCCC---EEEEEECCCcEEEEeCC
Q 006220          484 ----------------DRTARIWSMDRIQPLRIMAGHLSDVD---------CVRWHINCN---YIATGSSDKTVRLWDVS  535 (656)
Q Consensus       484 ----------------Dg~i~lwd~~~~~~~~~~~~~~~~V~---------~v~~~p~~~---~l~tgs~dg~V~iwd~~  535 (656)
                                      ...+...|.++++.+-.+.....++.         ......+++   .++.++.+|.+.++|..
T Consensus       255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~  334 (571)
T d2ad6a1         255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             cccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC
Confidence                            24577889999988877664332222         112222443   46778899999999999


Q ss_pred             CCeeEEEEecCC-------------------------------------CC--eEEEEEcCCCCEEEEEECC--------
Q 006220          536 SGECVRIFIGHR-------------------------------------SM--ILSLAMSPDGRYMASGDED--------  568 (656)
Q Consensus       536 ~~~~~~~~~~h~-------------------------------------~~--i~~l~~sp~g~~L~s~~~d--------  568 (656)
                      +|+.+.......                                     +.  -...+++|+...++....+        
T Consensus       335 tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~  414 (571)
T d2ad6a1         335 NGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF  414 (571)
T ss_dssp             TCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred             CCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccc
Confidence            998875432100                                     00  0125677776666654332        


Q ss_pred             -----------------------------CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220          569 -----------------------------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (656)
Q Consensus       569 -----------------------------g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~  619 (656)
                                                   |.|.-+|+.+|+.+-+...-. +..+-..+-.+.++++|+.||.++.+|..
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~  493 (571)
T d2ad6a1         415 MLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             CCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             cccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECC
Confidence                                         457777888887765543211 11110112246688889999999999999


Q ss_pred             CCCceeecccc
Q 006220          620 TSTKVLKTEEK  630 (656)
Q Consensus       620 ~~~~~~~~~~~  630 (656)
                      +++.+.+....
T Consensus       494 tGe~lW~~~l~  504 (571)
T d2ad6a1         494 DGKELWNFKMP  504 (571)
T ss_dssp             TCCEEEEEECS
T ss_pred             CCcEEEEEECC
Confidence            99999877543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.20  E-value=0.22  Score=52.68  Aligned_cols=188  Identities=14%  Similarity=0.083  Sum_probs=115.3

Q ss_pred             CCeEEEEeccCCceeEEeeCC-------------------------------------CccEE-EEEEecCCCEEEEEEC
Q 006220          442 DTTIRLWSTKLNANLVCYKGH-------------------------------------NYPVW-DVQFNPQGHYFASSSH  483 (656)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h-------------------------------------~~~V~-~l~~sp~~~~l~sgs~  483 (656)
                      .|.|+-+|..+++.+-.+...                                     ...+| .+++.+...++..+..
T Consensus       181 ~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg  260 (596)
T d1w6sa_         181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (596)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccc
Confidence            488999999999988765421                                     11122 3456666666655543


Q ss_pred             ----------------CCcEEEEECCCCceeEEecCCCCC---------eeEEEE-cCCC---CEEEEEECCCcEEEEeC
Q 006220          484 ----------------DRTARIWSMDRIQPLRIMAGHLSD---------VDCVRW-HINC---NYIATGSSDKTVRLWDV  534 (656)
Q Consensus       484 ----------------Dg~i~lwd~~~~~~~~~~~~~~~~---------V~~v~~-~p~~---~~l~tgs~dg~V~iwd~  534 (656)
                                      ...+...|.++++.+-.+.....+         ...+.. ..+|   ..++.++.+|.+.++|.
T Consensus       261 ~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr  340 (596)
T d1w6sa_         261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (596)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecC
Confidence                            234778899999887766532211         111221 2344   35777889999999999


Q ss_pred             CCCeeEEEEecCC-------------CCe--------------------------EEEEEcCCCCEEEEEECC-------
Q 006220          535 SSGECVRIFIGHR-------------SMI--------------------------LSLAMSPDGRYMASGDED-------  568 (656)
Q Consensus       535 ~~~~~~~~~~~h~-------------~~i--------------------------~~l~~sp~g~~L~s~~~d-------  568 (656)
                      .+|+.+.......             .++                          ..++++|+..+++....+       
T Consensus       341 ~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~  420 (596)
T d1w6sa_         341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420 (596)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccc
Confidence            9999876432100             000                          123566665555443211       


Q ss_pred             --------------------------------CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEE
Q 006220          569 --------------------------------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW  616 (656)
Q Consensus       569 --------------------------------g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iW  616 (656)
                                                      |.|.-||+.+|+.+-+.... .++.+-..+-.|.+++.|+.||.++.+
T Consensus       421 ~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~  499 (596)
T d1w6sa_         421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKAR  499 (596)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred             ccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCCC-CCCccceeEecCCEEEEECCCCeEEEE
Confidence                                            46777888888776554311 111111223356788889999999999


Q ss_pred             eCCCCCceeecccc
Q 006220          617 DVTTSTKVLKTEEK  630 (656)
Q Consensus       617 d~~~~~~~~~~~~~  630 (656)
                      |..+++.+.+....
T Consensus       500 Da~TGe~LW~~~~~  513 (596)
T d1w6sa_         500 DSDTGDLLWKFKIP  513 (596)
T ss_dssp             ETTTCCEEEEEECS
T ss_pred             ECCCCcEeeEEECC
Confidence            99999999877543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.92  E-value=0.13  Score=54.11  Aligned_cols=166  Identities=9%  Similarity=0.102  Sum_probs=103.1

Q ss_pred             CeEEEEeccCCceeEEeeCCCccEEE---------EEEecCC---CEEEEEECCCcEEEEECCCCceeEEecCCC-----
Q 006220          443 TTIRLWSTKLNANLVCYKGHNYPVWD---------VQFNPQG---HYFASSSHDRTARIWSMDRIQPLRIMAGHL-----  505 (656)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~---------l~~sp~~---~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~-----  505 (656)
                      ..|...|+++++....++.....+|.         +....++   ..++.++.+|.++++|..+++++.....-.     
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            35777788888887766654433332         2222234   356778899999999999888765432100     


Q ss_pred             -----------------------------CC--eeEEEEcCCCCEEEEEEC-----------------------------
Q 006220          506 -----------------------------SD--VDCVRWHINCNYIATGSS-----------------------------  525 (656)
Q Consensus       506 -----------------------------~~--V~~v~~~p~~~~l~tgs~-----------------------------  525 (656)
                                                   +.  -...+++|+...+++...                             
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                         00  013566777766665432                             


Q ss_pred             -------CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCcc-EEEEEE
Q 006220          526 -------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC-VWTLAY  597 (656)
Q Consensus       526 -------dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~-V~~l~~  597 (656)
                             .|.|.-||+.+|+.+...... .+...-.++-.|.++++|+.||.++.+|..+|+.+-++....+. -.-+.+
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty  508 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF  508 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEE
Confidence                   246778999999988766532 22222223445778889999999999999999999887642210 011445


Q ss_pred             cCCCC-EEEEEEC
Q 006220          598 SCEGS-LLASGSA  609 (656)
Q Consensus       598 s~~~~-~l~sgs~  609 (656)
                      ..+|+ +|+..+.
T Consensus       509 ~~dGkqyv~v~aG  521 (560)
T d1kv9a2         509 ELAGRQYVAIMAG  521 (560)
T ss_dssp             EETTEEEEEEEEC
T ss_pred             EECCEEEEEEEeC
Confidence            55775 5554443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.83  E-value=0.18  Score=53.14  Aligned_cols=165  Identities=12%  Similarity=0.085  Sum_probs=101.3

Q ss_pred             CeEEEEeccCCceeEEeeCCCccEEEE---------EEecCCC---EEEEEECCCcEEEEECCCCceeEEecCC------
Q 006220          443 TTIRLWSTKLNANLVCYKGHNYPVWDV---------QFNPQGH---YFASSSHDRTARIWSMDRIQPLRIMAGH------  504 (656)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~l---------~~sp~~~---~l~sgs~Dg~i~lwd~~~~~~~~~~~~~------  504 (656)
                      ..+...|.++++.+..++.+...+|+.         .+..++.   .++.++.+|.++++|..+++++......      
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            467778899998887777544333321         2222443   4677889999999999988876432110      


Q ss_pred             -------------------------------CCCe--eEEEEcCCCCEEEEEECC-------------------------
Q 006220          505 -------------------------------LSDV--DCVRWHINCNYIATGSSD-------------------------  526 (656)
Q Consensus       505 -------------------------------~~~V--~~v~~~p~~~~l~tgs~d-------------------------  526 (656)
                                                     .+..  ...+++|....+++...+                         
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence                                           0000  125677777766654332                         


Q ss_pred             ------------CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC-ccEE
Q 006220          527 ------------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-SCVW  593 (656)
Q Consensus       527 ------------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~-~~V~  593 (656)
                                  |.|.-+|+.+|+.+....... +..+-..+..+.++++|+.||.++.+|.++|+.+-++.-.. ..-.
T Consensus       432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~  510 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS  510 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             ccccCCcccCCcccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceec
Confidence                        457778888888876654221 11111122346788889999999999999999998876322 1111


Q ss_pred             EEEEcCCCC-EEEEEE
Q 006220          594 TLAYSCEGS-LLASGS  608 (656)
Q Consensus       594 ~l~~s~~~~-~l~sgs  608 (656)
                      -+.|..+|+ |+++..
T Consensus       511 P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         511 PMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             CEEEEETTEEEEEEEE
T ss_pred             ceEEEECCEEEEEEEe
Confidence            245555775 554443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.81  E-value=0.48  Score=49.46  Aligned_cols=188  Identities=11%  Similarity=0.102  Sum_probs=116.7

Q ss_pred             CCeEEEEeccCCceeEEeeCC------------------------------CccEE-EEEEecCCCEEEEEEC-------
Q 006220          442 DTTIRLWSTKLNANLVCYKGH------------------------------NYPVW-DVQFNPQGHYFASSSH-------  483 (656)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h------------------------------~~~V~-~l~~sp~~~~l~sgs~-------  483 (656)
                      .|.|.-+|..+++.+-.+..-                              ...+| .+++.+...+++.+..       
T Consensus       177 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~  256 (560)
T d1kv9a2         177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (560)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             cceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCccccc
Confidence            467999999999887765421                              11222 2456666666554331       


Q ss_pred             ------------CCcEEEEECCCCceeEEecCCCCCeeE---------EEEcCCC---CEEEEEECCCcEEEEeCCCCee
Q 006220          484 ------------DRTARIWSMDRIQPLRIMAGHLSDVDC---------VRWHINC---NYIATGSSDKTVRLWDVSSGEC  539 (656)
Q Consensus       484 ------------Dg~i~lwd~~~~~~~~~~~~~~~~V~~---------v~~~p~~---~~l~tgs~dg~V~iwd~~~~~~  539 (656)
                                  ...|...|.++++..-.+.....++..         +....++   ..++.++.+|.+.++|..+|+.
T Consensus       257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~  336 (560)
T d1kv9a2         257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (560)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence                        235677788888877666533333221         2222234   3567788999999999999998


Q ss_pred             EEEEecCC-CC-----------------------------------eEEEEEcCCCCEEEEEECC---------------
Q 006220          540 VRIFIGHR-SM-----------------------------------ILSLAMSPDGRYMASGDED---------------  568 (656)
Q Consensus       540 ~~~~~~h~-~~-----------------------------------i~~l~~sp~g~~L~s~~~d---------------  568 (656)
                      +.....-. ..                                   -...+++|+...++....+               
T Consensus       337 i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~  416 (560)
T d1kv9a2         337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (560)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             cccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccc
Confidence            75442110 00                                   0134667776666654322               


Q ss_pred             ---------------------CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220          569 ---------------------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (656)
Q Consensus       569 ---------------------g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  627 (656)
                                           |.|.-||+.+|+.+-+..... +..+-..+-.+.++++|+.||.++.+|..+++.+...
T Consensus       417 ~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~  495 (560)
T d1kv9a2         417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (560)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEE
Confidence                                 467788999998877654211 1111122334678889999999999999999999876


Q ss_pred             ccc
Q 006220          628 EEK  630 (656)
Q Consensus       628 ~~~  630 (656)
                      ...
T Consensus       496 ~l~  498 (560)
T d1kv9a2         496 EAQ  498 (560)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.43  Score=47.03  Aligned_cols=177  Identities=9%  Similarity=-0.024  Sum_probs=106.8

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccC-----------CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEE
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKL-----------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~-----------~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd  491 (656)
                      ...-+++++...+++.|+.++ +.|-.+..           ........  -..|..++|+.+  .++.. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            345678888777888888775 66766321           11111111  225888999744  45554 456688888


Q ss_pred             CCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec-----CCCCeEEEEEcCCCCEEEEEE
Q 006220          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-----HRSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~-----h~~~i~~l~~sp~g~~L~s~~  566 (656)
                      +...........-..++..+.++|+  .++....+|.+.++++..++......+     -.+.+.+++|++.|..++++.
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            8765555554444566778887775  567777899999999998865432211     135688888888888888774


Q ss_pred             CCCcEEEE-eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEE
Q 006220          567 EDGTIMMW-DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS  608 (656)
Q Consensus       567 ~dg~I~iw-D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs  608 (656)
                      .++ ..+- ++.....+.........|.++.|-.+..++++-+
T Consensus       190 g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         190 NGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             TTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence            332 2211 2221111111112345688999987766666553

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.21  Score=49.33  Aligned_cols=186  Identities=10%  Similarity=-0.014  Sum_probs=105.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (656)
Q Consensus       354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~  433 (656)
                      .+.+++++...++++|+.++ ++|-.+..........  ...             .......    .-..|..++|+.+ 
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~--~~~-------------~~~~~~~----~ip~v~~vafs~d-   97 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD--STP-------------LTFKWEK----EIPDVIFVCFHGD-   97 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS--SCC-------------CCCSEEE----ECTTEEEEEEETT-
T ss_pred             cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhcc--CCC-------------Ccceecc----CCCCeEEEEeeCC-
Confidence            55778888888888887775 6677765321110000  000             0000101    1125888999744 


Q ss_pred             CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-----CCCCCe
Q 006220          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-----GHLSDV  508 (656)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-----~~~~~V  508 (656)
                       .|+.. .++.+..++...-........-..++..+.++|.  .++....++.+.++++...+......     .-.+.+
T Consensus        98 -~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~  173 (381)
T d1xipa_          98 -QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ  173 (381)
T ss_dssp             -EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE
T ss_pred             -EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCc
Confidence             45544 4456888887765555444445567888888764  57777789999999998876443321     122557


Q ss_pred             eEEEEcCCCCEEEEEECCCcEEEE-eCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220          509 DCVRWHINCNYIATGSSDKTVRLW-DVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (656)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~V~iw-d~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~  565 (656)
                      .|++|++.|..++++..++ ..+- ++.....+.........+.+|.|-.+..++++-
T Consensus       174 ~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         174 LAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            7788887777777764322 1111 111110000001123467888888776666654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.43  E-value=0.16  Score=53.42  Aligned_cols=159  Identities=10%  Similarity=0.100  Sum_probs=96.8

Q ss_pred             eEEEEeccCCceeEEeeCCCccEEE---------EEEecCC---CEEEEEECCCcEEEEECCCCceeEEecCCCC-----
Q 006220          444 TIRLWSTKLNANLVCYKGHNYPVWD---------VQFNPQG---HYFASSSHDRTARIWSMDRIQPLRIMAGHLS-----  506 (656)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~h~~~V~~---------l~~sp~~---~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~-----  506 (656)
                      .|...|.++++....++.....+|.         .....++   ..++.++.+|.++++|..+++.+........     
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence            4556666777666555443222222         2222233   3577788999999999999887654321100     


Q ss_pred             ------------------------------CeeEEEEcCCCCEEEEEECC------------------------------
Q 006220          507 ------------------------------DVDCVRWHINCNYIATGSSD------------------------------  526 (656)
Q Consensus       507 ------------------------------~V~~v~~~p~~~~l~tgs~d------------------------------  526 (656)
                                                    .-...+++|+...+++...+                              
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  443 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccc
Confidence                                          01124677777666654322                              


Q ss_pred             -------------CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC----
Q 006220          527 -------------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT----  589 (656)
Q Consensus       527 -------------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~----  589 (656)
                                   |.+.-||+.+|+.+....... +...=..+-.|.++++|+.||.++.+|..+|+.+-++....    
T Consensus       444 ~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~  522 (573)
T d1kb0a2         444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVA  522 (573)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             cccccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccc
Confidence                         356778888888877665332 22111233457888899999999999999999998876322    


Q ss_pred             ccEEEEEEcCCCC-EEEE
Q 006220          590 SCVWTLAYSCEGS-LLAS  606 (656)
Q Consensus       590 ~~V~~l~~s~~~~-~l~s  606 (656)
                      .+   +.|..+|+ +|+.
T Consensus       523 ~P---~ty~~~GkQYv~v  537 (573)
T d1kb0a2         523 AP---STYMVDGRQYVSV  537 (573)
T ss_dssp             CC---EEEEETTEEEEEE
T ss_pred             cC---EEEEECCEEEEEE
Confidence            33   44555776 4443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.37  E-value=1  Score=43.71  Aligned_cols=187  Identities=17%  Similarity=0.256  Sum_probs=114.5

Q ss_pred             cCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEe------cCCCEEEEEEC--C--CcEEEEECCC-CceeE
Q 006220          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN------PQGHYFASSSH--D--RTARIWSMDR-IQPLR  499 (656)
Q Consensus       431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s------p~~~~l~sgs~--D--g~i~lwd~~~-~~~~~  499 (656)
                      |...+++.....+-|.+||+. |+.+..+.  .+.+..|..-      .....+++++.  +  .+|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            445677777777779999996 77776654  2345544433      12223555552  2  3577887753 22333


Q ss_pred             EecCC-------CCCeeEEEE--cCC-CC-EEEEEECCCcEEEEeCC---CC----eeEEEEecCCCCeEEEEEcCCCCE
Q 006220          500 IMAGH-------LSDVDCVRW--HIN-CN-YIATGSSDKTVRLWDVS---SG----ECVRIFIGHRSMILSLAMSPDGRY  561 (656)
Q Consensus       500 ~~~~~-------~~~V~~v~~--~p~-~~-~l~tgs~dg~V~iwd~~---~~----~~~~~~~~h~~~i~~l~~sp~g~~  561 (656)
                      .+...       ...+..+|+  ++. +. ++++...+|.+..|.+.   .+    ..++.|.. ...+..|.+.+..+.
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCc
Confidence            33321       234667776  554 44 56677788999888663   23    45566653 457888999999899


Q ss_pred             EEEEECCCcEEEEeCCC-----CeeeEeeeC--CCccEEEEEEcC--C--CCEEEEEECCCcEEEEeCCCC
Q 006220          562 MASGDEDGTIMMWDLAS-----GRCVTPLMG--HTSCVWTLAYSC--E--GSLLASGSADCTVKLWDVTTS  621 (656)
Q Consensus       562 L~s~~~dg~I~iwD~~~-----~~~~~~~~~--h~~~V~~l~~s~--~--~~~l~sgs~Dg~I~iWd~~~~  621 (656)
                      |+.+-++.-|+.++...     +..+....+  ..+-+-.|+.-.  +  |-+|+|.-.+++..|||....
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            99998877666665531     233333222  346677777532  3  334455557789999998775

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.33  E-value=0.78  Score=47.92  Aligned_cols=144  Identities=11%  Similarity=0.090  Sum_probs=87.6

Q ss_pred             cEEEEECCCCceeEEecCCCCC---------eeEEEEcCCC---CEEEEEECCCcEEEEeCCCCeeEEEEecCCCC----
Q 006220          486 TARIWSMDRIQPLRIMAGHLSD---------VDCVRWHINC---NYIATGSSDKTVRLWDVSSGECVRIFIGHRSM----  549 (656)
Q Consensus       486 ~i~lwd~~~~~~~~~~~~~~~~---------V~~v~~~p~~---~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~----  549 (656)
                      .+...|.++++....+.....+         ........++   ..++.++.+|.+.++|..+|+.+.........    
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence            4556677777766555422221         1222222233   35677889999999999999987654311100    


Q ss_pred             -------------------------------eEEEEEcCCCCEEEEEECC------------------------------
Q 006220          550 -------------------------------ILSLAMSPDGRYMASGDED------------------------------  568 (656)
Q Consensus       550 -------------------------------i~~l~~sp~g~~L~s~~~d------------------------------  568 (656)
                                                     -..++++|+...++....+                              
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  443 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccc
Confidence                                           0124677776666654332                              


Q ss_pred             -------------CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccc
Q 006220          569 -------------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK  630 (656)
Q Consensus       569 -------------g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~  630 (656)
                                   |.|.-||+.+|+.+-+..... +..+=..+-.+.++++|+.||.++.+|..+++.+.+....
T Consensus       444 ~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cccccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence                         346667777777766554321 1111112235778889999999999999999999877553

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.02  E-value=0.34  Score=50.93  Aligned_cols=80  Identities=19%  Similarity=0.260  Sum_probs=54.4

Q ss_pred             CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCcc-EEEEEEcCCCC-EE
Q 006220          527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC-VWTLAYSCEGS-LL  604 (656)
Q Consensus       527 g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~-V~~l~~s~~~~-~l  604 (656)
                      |.|.-+|+.+|+.+.....+. ++..-..+..|.++++|+.||.++-+|..+|+.+-++...... -.-+.|..+|+ |+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            568888999998887776443 2222223456778889999999999999999999888632211 11145667775 45


Q ss_pred             EEE
Q 006220          605 ASG  607 (656)
Q Consensus       605 ~sg  607 (656)
                      +..
T Consensus       545 ~i~  547 (582)
T d1flga_         545 GVT  547 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.01  E-value=0.34  Score=47.15  Aligned_cols=182  Identities=16%  Similarity=0.182  Sum_probs=101.4

Q ss_pred             EEEEEccCCCEEEEEeC------------CCeEEEEeccCCceeE-Ee--eCC-----CccEEEEEE--ecCCC-EEEEE
Q 006220          425 YSASFSPLGDFILSSSA------------DTTIRLWSTKLNANLV-CY--KGH-----NYPVWDVQF--NPQGH-YFASS  481 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~------------Dg~I~lwd~~~~~~~~-~~--~~h-----~~~V~~l~~--sp~~~-~l~sg  481 (656)
                      -.+...|+|..+++++.            .|.|.++|+.+..... .+  .+.     ......+..  .++|. +|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            35777788877766542            4889999987654322 11  111     112234443  33454 35554


Q ss_pred             EC---CCcEEEEECCCCce-e---EEec-CCCCCeeEEEEcCCCCEEEEEEC---------------CCcEEEEeCCCCe
Q 006220          482 SH---DRTARIWSMDRIQP-L---RIMA-GHLSDVDCVRWHINCNYIATGSS---------------DKTVRLWDVSSGE  538 (656)
Q Consensus       482 s~---Dg~i~lwd~~~~~~-~---~~~~-~~~~~V~~v~~~p~~~~l~tgs~---------------dg~V~iwd~~~~~  538 (656)
                      .+   ..+|-+|++..... +   ..+. ......+.+++..++..++|-..               -++..+|....+.
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence            43   45677777654332 1   2222 22344678888888887777311               1233444444444


Q ss_pred             eEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCeeeEee--eCCCccEEEEEEcC-CCCEEEEE
Q 006220          539 CVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRCVTPL--MGHTSCVWTLAYSC-EGSLLASG  607 (656)
Q Consensus       539 ~~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iwD~~~~~~~~~~--~~h~~~V~~l~~s~-~~~~l~sg  607 (656)
                      .. .....-...+.|+++|++++|+.+ +..+.|+.|++.....+...  ..-.+..-.+.+.+ +|.+.+.+
T Consensus       198 ~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         198 VR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             eE-EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            33 222233567899999999877665 46788999998754322221  12335567788876 45554444

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.77  E-value=2  Score=41.53  Aligned_cols=142  Identities=13%  Similarity=0.209  Sum_probs=86.1

Q ss_pred             eEEEEeccCC-ceeEEeeCC-------CccEEEEEE--ecC-CC-EEEEEECCCcEEEEECC---CC----ceeEEecCC
Q 006220          444 TIRLWSTKLN-ANLVCYKGH-------NYPVWDVQF--NPQ-GH-YFASSSHDRTARIWSMD---RI----QPLRIMAGH  504 (656)
Q Consensus       444 ~I~lwd~~~~-~~~~~~~~h-------~~~V~~l~~--sp~-~~-~l~sgs~Dg~i~lwd~~---~~----~~~~~~~~~  504 (656)
                      +|.+|.+... ..+..+...       ...+..+|+  ++. |. ++++...+|.+..|.+.   .+    +.++.+. -
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~  178 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-M  178 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-C
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-C
Confidence            6888887632 223333221       123667777  553 44 56666788999888763   22    3445554 3


Q ss_pred             CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-----CeeEEEEec--CCCCeEEEEEcC--C--CCEEEEEECCCcEEE
Q 006220          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-----GECVRIFIG--HRSMILSLAMSP--D--GRYMASGDEDGTIMM  573 (656)
Q Consensus       505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-----~~~~~~~~~--h~~~i~~l~~sp--~--g~~L~s~~~dg~I~i  573 (656)
                      .+.+..|.+......|+.+-.+.-|+.++...     +..+....+  ..+.+-.|+.-.  +  |-+|+|.-.+++..|
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v  258 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI  258 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence            46789999999999999998887776666541     222222212  245666676543  3  334555557789999


Q ss_pred             EeCCC-CeeeEeee
Q 006220          574 WDLAS-GRCVTPLM  586 (656)
Q Consensus       574 wD~~~-~~~~~~~~  586 (656)
                      ||... .+.+..+.
T Consensus       259 ydr~~~~~~~g~F~  272 (353)
T d1h6la_         259 YERQGQNKYVADFQ  272 (353)
T ss_dssp             EESSTTCCEEEEEE
T ss_pred             EecCCCccccceEE
Confidence            99876 35555543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.17  E-value=0.58  Score=45.55  Aligned_cols=157  Identities=11%  Similarity=0.057  Sum_probs=95.9

Q ss_pred             EEEEEccCCCEEEEEeCCC-----------eEEEEeccCCcee--EEe-eCCCccEEEEEEecCCCEEEEEECC-CcEEE
Q 006220          425 YSASFSPLGDFILSSSADT-----------TIRLWSTKLNANL--VCY-KGHNYPVWDVQFNPQGHYFASSSHD-RTARI  489 (656)
Q Consensus       425 ~~l~~spd~~~L~s~s~Dg-----------~I~lwd~~~~~~~--~~~-~~h~~~V~~l~~sp~~~~l~sgs~D-g~i~l  489 (656)
                      .......+|+.++.|+.+.           .+.+||..+++-.  ... ..|.......++.++|.+++.|+.+ ..+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            3344456788777777421           3779999876532  222 2233334567788999999988755 58999


Q ss_pred             EECCCCceeEEecC-CCCCeeEEEEcCCCCEEEEEECC------CcEEEEeCCCCeeEEEEe---------cCC-----C
Q 006220          490 WSMDRIQPLRIMAG-HLSDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFI---------GHR-----S  548 (656)
Q Consensus       490 wd~~~~~~~~~~~~-~~~~V~~v~~~p~~~~l~tgs~d------g~V~iwd~~~~~~~~~~~---------~h~-----~  548 (656)
                      ||..+..-...-.. ....-.+++..++|.+++.|+.+      ..+.+||..+.+-...-.         .+.     .
T Consensus       103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  182 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  182 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeecc
Confidence            99887654322111 11123456667899999988753      368999998775432110         000     0


Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                      .-..+...++|+.+..++.++.+.++|..+...
T Consensus       183 ~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         183 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            111233345677777777777788888776643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.06  E-value=2.1  Score=44.64  Aligned_cols=190  Identities=15%  Similarity=0.070  Sum_probs=114.3

Q ss_pred             EEEeCCCeEEEEec-cCCceeEEeeCCC-----------ccEEEEEEecC----CCEEEEEECCCcEEEEECCCCceeEE
Q 006220          437 LSSSADTTIRLWST-KLNANLVCYKGHN-----------YPVWDVQFNPQ----GHYFASSSHDRTARIWSMDRIQPLRI  500 (656)
Q Consensus       437 ~s~s~Dg~I~lwd~-~~~~~~~~~~~h~-----------~~V~~l~~sp~----~~~l~sgs~Dg~i~lwd~~~~~~~~~  500 (656)
                      ++++.++.|...|. .+++.+-.+....           ..-..+++.++    +..++.++.|+.+.-.|.++++.+..
T Consensus        67 ~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~  146 (596)
T d1w6sa_          67 IHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWK  146 (596)
T ss_dssp             EECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCceecc
Confidence            33444455666665 4666666553211           01133555443    34688899999999999999998887


Q ss_pred             ecCCCCCe-eEEEEcC--CCCEEEEEEC------CCcEEEEeCCCCeeEEEEecCC------------------------
Q 006220          501 MAGHLSDV-DCVRWHI--NCNYIATGSS------DKTVRLWDVSSGECVRIFIGHR------------------------  547 (656)
Q Consensus       501 ~~~~~~~V-~~v~~~p--~~~~l~tgs~------dg~V~iwd~~~~~~~~~~~~h~------------------------  547 (656)
                      +....... ..+.-.|  -+..+++|+.      .|.|+-+|+++|+.+..+....                        
T Consensus       147 ~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~  226 (596)
T d1w6sa_         147 VENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLG  226 (596)
T ss_dssp             EECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHH
T ss_pred             ccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccc
Confidence            75221111 0111111  2345666543      4899999999999998765221                        


Q ss_pred             -------------C-CeEEEEEcCCCCEEEEEEC----------------CCcEEEEeCCCCeeeEeeeC--CC------
Q 006220          548 -------------S-MILSLAMSPDGRYMASGDE----------------DGTIMMWDLASGRCVTPLMG--HT------  589 (656)
Q Consensus       548 -------------~-~i~~l~~sp~g~~L~s~~~----------------dg~I~iwD~~~~~~~~~~~~--h~------  589 (656)
                                   . .-..+++.+...+++.+..                ..+|.-.|+.+|+.+-.++.  |.      
T Consensus       227 ~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~  306 (596)
T d1w6sa_         227 TGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAG  306 (596)
T ss_dssp             HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred             cccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCcc
Confidence                         0 1123455666666665533                23577889999998876653  21      


Q ss_pred             -ccEEEEE-EcCCC---CEEEEEECCCcEEEEeCCCCCceee
Q 006220          590 -SCVWTLA-YSCEG---SLLASGSADCTVKLWDVTTSTKVLK  626 (656)
Q Consensus       590 -~~V~~l~-~s~~~---~~l~sgs~Dg~I~iWd~~~~~~~~~  626 (656)
                       ....-+. -..+|   ..++.++.+|.+.++|-.+++.+..
T Consensus       307 ~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         307 VNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (596)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence             1111122 12344   3678888999999999999987754

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.90  E-value=2.6  Score=39.44  Aligned_cols=197  Identities=11%  Similarity=0.116  Sum_probs=116.1

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC----c
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH----S  421 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h----~  421 (656)
                      .-+.....|.==.|-.+. .|+.- .+..|.=|+++....                           +...+..|    .
T Consensus        97 ks~~~~e~VvfWkWis~~-~L~lV-T~taVYHW~~~g~s~---------------------------P~k~fdR~~~L~~  147 (327)
T d1utca2          97 KAHTMTDDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQ---------------------------PVKMFDRHSSLAG  147 (327)
T ss_dssp             EEEECSSCCCEEEESSSS-EEEEE-CSSEEEEEESSSSCC---------------------------CEEEEECCGGGTT
T ss_pred             ceEEcCCCcEEEEecCCC-EEEEE-cCCceEEEcccCCCC---------------------------chhhhhhcccccC
Confidence            334445556555664443 45444 456799999864111                           11222222    2


Q ss_pred             cCEEEEEEccCCCEEEEEeC-------CCeEEEEeccCCceeEEeeCCCccEEEEEEecCC---CEEEEEE---CCCcEE
Q 006220          422 GPVYSASFSPLGDFILSSSA-------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG---HYFASSS---HDRTAR  488 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~-------Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~---~~l~sgs---~Dg~i~  488 (656)
                      ..|..-..+++.++++..+-       .|.+.+|+.+.+ .-+.+.||......+.+..+.   ..|+.+.   ..+.++
T Consensus       148 ~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLh  226 (327)
T d1utca2         148 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  226 (327)
T ss_dssp             CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEE
T ss_pred             ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEE
Confidence            45667777788887664432       367899998844 445567776544444332211   2333332   336788


Q ss_pred             EEECCCCc---e------eEEecC---CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEc
Q 006220          489 IWSMDRIQ---P------LRIMAG---HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS  556 (656)
Q Consensus       489 lwd~~~~~---~------~~~~~~---~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~s  556 (656)
                      +.++.+..   +      +..+..   ...-..++..++....++.-+.-|.|.+||+.++.++..-+-...+|...+-.
T Consensus       227 IiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~  306 (327)
T d1utca2         227 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH  306 (327)
T ss_dssp             EEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred             EEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccC
Confidence            88886521   1      111111   12335577888888899999999999999999999987766556666655555


Q ss_pred             CCCCEEEEEECCCcEE
Q 006220          557 PDGRYMASGDEDGTIM  572 (656)
Q Consensus       557 p~g~~L~s~~~dg~I~  572 (656)
                      .+..-+++...+|.|.
T Consensus       307 ~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         307 EATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTTTEEEEEETTSEEE
T ss_pred             CCCceEEEECCCCeEE
Confidence            5544455555666654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.60  E-value=0.46  Score=49.92  Aligned_cols=80  Identities=18%  Similarity=0.174  Sum_probs=53.8

Q ss_pred             CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC-eEEEEEcCCCC-EE
Q 006220          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGR-YM  562 (656)
Q Consensus       485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~-i~~l~~sp~g~-~L  562 (656)
                      |.+.-+|+.+++.+-....+. ++..-.....+..+++|+.||.++-+|..+|+.+..+....+. -.-+.|..+|+ |+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            567778888887776655332 2222222346678889999999999999999999888743321 12256777885 55


Q ss_pred             EEE
Q 006220          563 ASG  565 (656)
Q Consensus       563 ~s~  565 (656)
                      +..
T Consensus       545 ~i~  547 (582)
T d1flga_         545 GVT  547 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.35  E-value=0.033  Score=40.89  Aligned_cols=30  Identities=23%  Similarity=0.427  Sum_probs=27.5

Q ss_pred             hHHHHHHHHHHHHhcCccHHHHHHHHHHhc
Q 006220            3 ELQVVEFVATYLKKKGFSEAENALQAEIQR   32 (656)
Q Consensus         3 ~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~   32 (656)
                      .++|++++++||.++||..+-++|+.|+..
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l   36 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAEL   36 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCC
Confidence            478999999999999999999999999754

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.32  E-value=4.5  Score=40.34  Aligned_cols=37  Identities=5%  Similarity=-0.022  Sum_probs=28.1

Q ss_pred             EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 006220          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK  382 (656)
Q Consensus       346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~  382 (656)
                      .+...-..-++|+|.|||++|++--..|.|++++...
T Consensus        21 ~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~   57 (450)
T d1crua_          21 VILSNLNKPHALLWGPDNQIWLTERATGKILRVNPES   57 (450)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             EEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCC
Confidence            3444445788999999999988774579998887654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.34  E-value=1.4  Score=40.52  Aligned_cols=105  Identities=16%  Similarity=0.131  Sum_probs=51.8

Q ss_pred             CCCEEEEEECC-----CcEEEEeCCCCeeEEEEecCCC-CeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeeEe
Q 006220          516 NCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDED-----GTIMMWDLASGRCVTP  584 (656)
Q Consensus       516 ~~~~l~tgs~d-----g~V~iwd~~~~~~~~~~~~h~~-~i~~l~~sp~g~~L~s~~~d-----g~I~iwD~~~~~~~~~  584 (656)
                      ++..++.|+.+     ..+..||..+++....-..... ...++.. .++..++.|+.+     .....+|..+.+....
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~  226 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV  226 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecc
Confidence            34455555543     4578888877654432111111 1112222 235556665543     3567778766543322


Q ss_pred             eeCCCccE-EEEEEcCCCCEEEEEECCC-----cEEEEeCCCCC
Q 006220          585 LMGHTSCV-WTLAYSCEGSLLASGSADC-----TVKLWDVTTST  622 (656)
Q Consensus       585 ~~~h~~~V-~~l~~s~~~~~l~sgs~Dg-----~I~iWd~~~~~  622 (656)
                      -....... .+++. .++++++.|+.++     .|.+||+.+.+
T Consensus       227 ~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         227 APMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             cCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            11111111 12222 3677888877554     37888888754

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.28  E-value=3.7  Score=41.02  Aligned_cols=104  Identities=10%  Similarity=0.133  Sum_probs=60.9

Q ss_pred             ccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--------CCCCCeeEEEEcCC---CCEEEEEEC-------
Q 006220          464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--------GHLSDVDCVRWHIN---CNYIATGSS-------  525 (656)
Q Consensus       464 ~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~--------~~~~~V~~v~~~p~---~~~l~tgs~-------  525 (656)
                      ..-|+|+|.|+|++|++--..|.|++++..++.......        .-......|+|||+   ..+++....       
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            356799999999988776557999999877765433221        11245678999984   345544211       


Q ss_pred             C----C--cEEEEeCCCCee-----EEEEe----cCCCCeEEEEEcCCCCEEEEEEC
Q 006220          526 D----K--TVRLWDVSSGEC-----VRIFI----GHRSMILSLAMSPDGRYMASGDE  567 (656)
Q Consensus       526 d----g--~V~iwd~~~~~~-----~~~~~----~h~~~i~~l~~sp~g~~L~s~~~  567 (656)
                      +    .  .++.+.......     ...+.    ........|.|.|||.+.++.++
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            1    1  133333322211     11111    11234578999999987777653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.71  E-value=10  Score=37.14  Aligned_cols=159  Identities=16%  Similarity=0.134  Sum_probs=84.2

Q ss_pred             cCEEEEEEccCCCEEEEEeC---CCeEEEE--eccCCce--------eEEeeCCCccEEEEEEecCCCEEEEEE---CCC
Q 006220          422 GPVYSASFSPLGDFILSSSA---DTTIRLW--STKLNAN--------LVCYKGHNYPVWDVQFNPQGHYFASSS---HDR  485 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~---Dg~I~lw--d~~~~~~--------~~~~~~h~~~V~~l~~sp~~~~l~sgs---~Dg  485 (656)
                      ..+..+..++++++++....   ++...+|  ++.....        ............ ..-+..+.+++...   .++
T Consensus       233 ~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Tn~~a~~~  311 (430)
T d1qfma1         233 KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNY  311 (430)
T ss_dssp             TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTC
T ss_pred             ceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceE-EEecCCceeecccCcccccc
Confidence            34667888999998764322   3334444  4432211        112222222222 22222333333332   346


Q ss_pred             cEEEEECCCCce---eEEecCCCCCeeEEEEcCCCCEEEEEE-CCC--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC
Q 006220          486 TARIWSMDRIQP---LRIMAGHLSDVDCVRWHINCNYIATGS-SDK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDG  559 (656)
Q Consensus       486 ~i~lwd~~~~~~---~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g  559 (656)
                      .|...++.....   ...+..+...+..-.+...+.+|+... .++  .|++++..++.....+....+.|..+...++.
T Consensus       312 ~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~  391 (430)
T d1qfma1         312 RLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKD  391 (430)
T ss_dssp             EEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTC
T ss_pred             eeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCC
Confidence            677777765432   233444555555444445555666554 454  58899998888776665555556655555555


Q ss_pred             CEEEEEECC----CcEEEEeCCCCee
Q 006220          560 RYMASGDED----GTIMMWDLASGRC  581 (656)
Q Consensus       560 ~~L~s~~~d----g~I~iwD~~~~~~  581 (656)
                      ..+...-.+    .++.-+|+.+++.
T Consensus       392 ~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         392 TEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             SEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             CEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            544433222    6788888887753

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=87.36  E-value=7  Score=35.59  Aligned_cols=168  Identities=15%  Similarity=0.038  Sum_probs=79.7

Q ss_pred             CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEE
Q 006220          441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI  520 (656)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l  520 (656)
                      .||.+..|.................+..+.... . ..+. -.|+.+..|.................|..++-.  ... 
T Consensus        81 ~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~-~-~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~-  154 (273)
T d1jtdb_          81 KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA-W-ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYT-  154 (273)
T ss_dssp             ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEET-T-EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSE-
T ss_pred             eeeeeeccCCCcceeeccccccccceeEEeeec-c-cccc-cccccceecccCCCCceeeeccCCceEEEEecc--cee-
Confidence            478888887543222111111122344444332 2 2222 248899999754322221111222334444332  222 


Q ss_pred             EEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220          521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE  600 (656)
Q Consensus       521 ~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~  600 (656)
                      .....++.++.|-................|..|+....  +.+.-. ||.|+.|=......+..-......|..|+-...
T Consensus       155 ~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~  231 (273)
T d1jtdb_         155 ALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW  231 (273)
T ss_dssp             EEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS
T ss_pred             eeeecccceeEeecccCCcccccccccCCccceeccce--eeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcc
Confidence            33335788888876543222222233456777766432  333233 799999954322111111111234666665433


Q ss_pred             CCEEEEEECCCcEEEEeCCC
Q 006220          601 GSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       601 ~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      . .++. . ||.|..|=-..
T Consensus       232 ~-~~~l-~-~g~v~~WG~~~  248 (273)
T d1jtdb_         232 Y-SLAL-K-NGKVIAWGSSR  248 (273)
T ss_dssp             C-EEEE-E-TTEEEEESTTC
T ss_pred             e-EEEE-E-CCEEEEECCCC
Confidence            3 3333 3 89999996443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=86.25  E-value=5.6  Score=36.34  Aligned_cols=184  Identities=17%  Similarity=0.071  Sum_probs=89.2

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (656)
Q Consensus       422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~  501 (656)
                      ..|..|+-.  ..+.+... ||.|..|-......+-.-......|..++-. +.+.++.  .|+.+..|.....-.....
T Consensus        26 ~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G-~~~~~al--~dg~v~~wG~~~~gq~~~~   99 (273)
T d1jtdb_          26 SGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG-NYHSLAL--KDGEVIAWGGNEDGQTTVP   99 (273)
T ss_dssp             SSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC-SSEEEEE--ETTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC-CCceeee--eeeeeeccCCCcceeeccc
Confidence            346666653  23333334 7999999766543332212223345555442 2223332  4899999976432221111


Q ss_pred             cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (656)
Q Consensus       502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~  581 (656)
                      ......+..++....  ..+. -.|+.+..|.-...............|..++-.   .+......++.+..|-......
T Consensus       100 ~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~g~~~~~G~~~~g~  173 (273)
T d1jtdb_         100 AEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG---VYTALAVKNGGVIAWGDNYFGQ  173 (273)
T ss_dssp             GGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC---SSEEEEEETTEEEEEECCTTST
T ss_pred             cccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEecc---ceeeeeecccceeEeecccCCc
Confidence            112233445544332  2222 248899999754322211111122345444432   2223334578888886644322


Q ss_pred             eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220          582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (656)
Q Consensus       582 ~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~  620 (656)
                      ...-......|..++.....  .+.-. ||.|+.|=...
T Consensus       174 ~~~~~~~~~~v~~Is~G~~h--~~~l~-dG~v~~WG~n~  209 (273)
T d1jtdb_         174 TTVPAEAQSGVDDVAGGIFH--SLALK-DGKVIAWGDNR  209 (273)
T ss_dssp             TSCCGGGSSSEEEEEECSSE--EEEEE-TTEEEEEECCT
T ss_pred             ccccccccCCccceecccee--eEEEe-cCcEEEcCCCC
Confidence            22112234567777765432  22223 89999996543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=80.81  E-value=17  Score=31.75  Aligned_cols=187  Identities=13%  Similarity=0.131  Sum_probs=97.9

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee--EEeeCCCccEEEEEEecCCCEEEEEE----CCCcEEEEECCCCc
Q 006220          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANL--VCYKGHNYPVWDVQFNPQGHYFASSS----HDRTARIWSMDRIQ  496 (656)
Q Consensus       423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~--~~~~~h~~~V~~l~~sp~~~~l~sgs----~Dg~i~lwd~~~~~  496 (656)
                      .|.++++. +.+..++|+....+.+|-++.+...  ..+.+ -+-|+++    .+++++-.+    ......+-|+.++ 
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPp-FsFVtDI----~~d~I~G~g~~~g~~~sfF~adl~SG-  177 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLSSG-  177 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEE----ETTEEEEEEEEETTEEEEEEEETTTE-
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCC-cceEEec----cCCeEEEEeeecCCcceEEEEecccC-
Confidence            45555554 3456677877777899988866543  22222 2234333    233332211    1112222233222 


Q ss_pred             eeEEecCCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCCeeEEEEec-------CCCCeEEEEEcCCCCEEEEEE
Q 006220          497 PLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSGECVRIFIG-------HRSMILSLAMSPDGRYMASGD  566 (656)
Q Consensus       497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~V~iwd~~~~~~~~~~~~-------h~~~i~~l~~sp~g~~L~s~~  566 (656)
                      .++++....+.++...+.+..+. +++-.   .....-+|+++++.-+.-..       ....|+-+-+.|++++++.+-
T Consensus       178 ~lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiak  256 (313)
T d2hu7a1         178 GLRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR  256 (313)
T ss_dssp             EEEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred             CEEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEe
Confidence            34444445555666666654443 43321   12222458887766553221       123567778999999999999


Q ss_pred             CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEE-EECCCcEEEEeCCCCCc
Q 006220          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS-GSADCTVKLWDVTTSTK  623 (656)
Q Consensus       567 ~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-gs~Dg~I~iWd~~~~~~  623 (656)
                      .||.-.+|+  +|+.+..-.   +.+.....-. +.+..+ .+-..--+|-.+.+++.
T Consensus       257 rdG~s~lF~--nGk~in~p~---G~~~gat~i~-~~iyfshsSL~tP~kI~~~~~~~~  308 (313)
T d2hu7a1         257 REGRSAVFI--DGERVEAPQ---GNHGRVVLWR-GKLVTSHTSLSTPPRIVSLPSGEP  308 (313)
T ss_dssp             ETTEEEEEE--TTEEECCCS---SEEEEEEEET-TEEEEEEEETTEEEEEEEETTCCE
T ss_pred             cCCchheee--cceEecCCC---CcccceEEEC-CEEEEeecccCCCceeEEcCCCCc
Confidence            999999997  677665443   3333333222 223322 33333345555555544