Citrus Sinensis ID: 006224

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650------
MTINLPPFYCSICLDTRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
ccccccHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEccccccccccccccccccccccccccHHHHHHHccHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHccccccEEEEcccHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcEEEEEccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHccccEEEccccccccccccHHHHHHHHHHccEEEEEEEccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccEEccccccccccccccccccccccccccccccEEccccccccccEEEEEEEEEcccccccEEEEEEEEccccccccccEEccccEEEEccccEEEEEEEEcccccEEEEcccccEEEcccEEEEEEccccccEEEEEEEEEEEc
cccccHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEcccccEccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEEEEEccccccccccccccccEEcHHHHHHHcccHHHHHHHHcccHEEEHHHHccccccccccHHHHHHHHHHHccccEEEEEcHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccHHHHHHHHHHHHccEEEEEccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHcEcccccccccccHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccEEHHHHcccccccHEEEEcccccHHHHHHHHHHHcccccccccccccccHHHccccccccccccccccccccEEEEcccccEEccccccEEEEEEEEccccccccEcccccccccccccccccccEEcccHHcccccEEEEEEEEEEcccccccEEEEEEEcccccccccHHHHcccEEEEEccccEEEEEEEEccHHHHHEEcccccEEEccccEEEEEccccccEEEEEEEEEEEc
mtinlppfycsicldtrqlyvvSDEARAMYnggmagltywspnvnifrdprwgrgqetpgedpvltgkYAASYVrglqgntgsrlKVAACCKHytaydldnwngvdryhfnarvskqdledtynvpfkACVVEGKVASVMCSynqvngkptcadpdilkntihgqwrldgyivsdcdsvgvlyntqhytrtpeEAAADAIKAgldldcgpflaihtegavrggllrEEDVNLALAYTITVQMRlgmfdgepsaqpfgnlgprdvctpAHQQLALQAAHQGIVLLKNsartlplstlrhhtvavigpnsdvTVTMIGNYAgvacgyttplqgISRYAKTIHQAgcfgvacngnqLIGAAEVAARQADATVLVMGLDQSIEAEFIDRaglllpgrQQELVSRVAKASRGPVVLVLMCggpvdvsfakndprigailwvgypgqaggAAIADVLFgranpggklpmtwypqdyvsrlpmtdmrmraargypgrtyrfykgpvvfpfghgmsytTFAHTlskapnqfsvpiatslyafknttisSNAIRVAHTNCNDAMSLGLHvdikntgdmagtHTLLvfakppagnwspnkqligfkKVHVTAGALQSVRLDIHVckhlsvvdkfgirripmgehslhigdlkHSISLQANLEGIKF
MTINLPPFYCSICLDTRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGlqgntgsrLKVAACCKHYTAYDLDNWNGVDRYHFNARVskqdledtynVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTvavigpnsdVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGehslhigdlkhsislqanlegikf
MTINLPPFYCSICLDTRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPahqqlalqaahqGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
***NLPPFYCSICLDTRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRG*******PVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGE****PFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSI***********
MTINLPPFYCSICLDTRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
MTINLPPFYCSICLDTRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
MTINLPPFYCSICLDTRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQ********RAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
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MTINLPPFYCSICLDTRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query656 2.2.26 [Sep-21-2011]
Q9FGY1774 Beta-D-xylosidase 1 OS=Ar yes no 0.958 0.812 0.75 0.0
Q94KD8768 Probable beta-D-xylosidas no no 0.957 0.817 0.701 0.0
Q9FLG1784 Beta-D-xylosidase 4 OS=Ar no no 0.949 0.794 0.598 0.0
A5JTQ2774 Beta-xylosidase/alpha-L-a N/A no 0.949 0.804 0.582 0.0
A5JTQ3774 Beta-xylosidase/alpha-L-a N/A no 0.948 0.803 0.582 0.0
Q9LXD6773 Beta-D-xylosidase 3 OS=Ar no no 0.948 0.804 0.575 0.0
Q9LJN4781 Probable beta-D-xylosidas no no 0.932 0.783 0.540 0.0
P83344461 Putative beta-D-xylosidas N/A no 0.698 0.993 0.757 0.0
Q9SGZ5767 Probable beta-D-xylosidas no no 0.935 0.800 0.486 0.0
Q9LXA8792 Probable beta-D-xylosidas no no 0.952 0.789 0.455 1e-175
>sp|Q9FGY1|BXL1_ARATH Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/636 (75%), Positives = 543/636 (85%), Gaps = 7/636 (1%)

Query: 21  VVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGN 80
           VVSDEARAMYNGG+AGLTYWSPNVNI RDPRWGRGQETPGEDP++  KYAASYVRGLQG 
Sbjct: 141 VVSDEARAMYNGGVAGLTYWSPNVNILRDPRWGRGQETPGEDPIVAAKYAASYVRGLQGT 200

Query: 81  T-GSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASV 139
             G+RLKVAACCKHYTAYDLDNWNGVDR+HFNA+V++QDLEDTYNVPFK+CV EGKVASV
Sbjct: 201 AAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVTQQDLEDTYNVPFKSCVYEGKVASV 260

Query: 140 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADA 199
           MCSYNQVNGKPTCAD ++LKNTI GQWRL+GYIVSDCDSV V +N QHYT TPEEAAA +
Sbjct: 261 MCSYNQVNGKPTCADENLLKNTIRGQWRLNGYIVSDCDSVDVFFNQQHYTSTPEEAAARS 320

Query: 200 IKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNL 259
           IKAGLDLDCGPFLAI TEGAV+ GLL E D+NLALA T+TVQMRLGMFDG  +  P+ NL
Sbjct: 321 IKAGLDLDCGPFLAIFTEGAVKKGLLTENDINLALANTLTVQMRLGMFDG--NLGPYANL 378

Query: 260 GPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA 319
           GPRDVCTPAH+ LAL+AAHQGIVLLKNSAR+LPLS  RH TVAVIGPNSDVT TMIGNYA
Sbjct: 379 GPRDVCTPAHKHLALEAAHQGIVLLKNSARSLPLSPRRHRTVAVIGPNSDVTETMIGNYA 438

Query: 320 GVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIE 379
           G AC YT+PLQGISRYA+T+HQAGC GVAC GNQ  GAAE AAR+ADATVLVMGLDQSIE
Sbjct: 439 GKACAYTSPLQGISRYARTLHQAGCAGVACKGNQGFGAAEAAAREADATVLVMGLDQSIE 498

Query: 380 AEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYP 439
           AE  DR GLLLPG QQ+LV+RVA+ASRGPV+LVLM GGP+DV+FAKNDPR+ AI+W GYP
Sbjct: 499 AETRDRTGLLLPGYQQDLVTRVAQASRGPVILVLMSGGPIDVTFAKNDPRVAAIIWAGYP 558

Query: 440 GQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPV 499
           GQAGGAAIA+++FG ANPGGKLPMTWYPQDYV+++PMT M MRA+  YPGRTYRFYKGPV
Sbjct: 559 GQAGGAAIANIIFGAANPGGKLPMTWYPQDYVAKVPMTVMAMRASGNYPGRTYRFYKGPV 618

Query: 500 VFPFGHGMSYTTFAHTLSKAP-NQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLG 558
           VFPFG G+SYTTF H+L+K+P  Q SV ++    A      SS++I+V+HTNCN    + 
Sbjct: 619 VFPFGFGLSYTTFTHSLAKSPLAQLSVSLSNLNSANTILNSSSHSIKVSHTNCNSFPKMP 678

Query: 559 LHVDIKNTGDMAGTHTLLVFAKPPAG---NWSPNKQLIGFKKVHVTAGALQSVRLDIHVC 615
           LHV++ NTG+  GTHT+ VFA+PP         NKQLI F+KVHV AGA Q+V++D+  C
Sbjct: 679 LHVEVSNTGEFDGTHTVFVFAEPPINGIKGLGVNKQLIAFEKVHVMAGAKQTVQVDVDAC 738

Query: 616 KHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANL 651
           KHL VVD++G RRIPMGEH LHIGDLKH+I +Q  L
Sbjct: 739 KHLGVVDEYGKRRIPMGEHKLHIGDLKHTILVQPQL 774
Involved in pectic arabinan modification in mucilage secretory cells. Acts also as a beta-D-xylosidase during the remodeling of xylans in vascular development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 5
>sp|Q94KD8|BXL2_ARATH Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FLG1|BXL4_ARATH Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1 Back     alignment and function description
>sp|A5JTQ2|XYL1_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment) OS=Medicago sativa subsp. varia GN=Xyl1 PE=1 SV=1 Back     alignment and function description
>sp|A5JTQ3|XYL2_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXD6|BXL3_ARATH Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LJN4|BXL5_ARATH Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2 Back     alignment and function description
>sp|P83344|XYNB_PRUPE Putative beta-D-xylosidase (Fragment) OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2 Back     alignment and function description
>sp|Q9LXA8|BXL6_ARATH Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query656
183579871 769 arabinofuranosidase [Citrus unshiu] 0.948 0.808 0.963 0.0
224111912 768 predicted protein [Populus trichocarpa] 0.961 0.821 0.827 0.0
224099193755 predicted protein [Populus trichocarpa] 0.957 0.831 0.818 0.0
255556320 782 Periplasmic beta-glucosidase precursor, 0.961 0.806 0.802 0.0
408354266 775 alpha-L-arabinofuranosidase/beta-D-xylos 0.966 0.818 0.793 0.0
408354264 775 alpha-L-arabinofuranosidase/beta-D-xylos 0.964 0.816 0.792 0.0
298364130 774 alpha-L-arabinofuranosidase/beta-D-xylos 0.966 0.819 0.773 0.0
157041199 774 beta-D-xylosidase [Pyrus pyrifolia] 0.966 0.819 0.779 0.0
86553064 772 beta xylosidase [Fragaria x ananassa] 0.964 0.819 0.787 0.0
65736613 774 alpha-L-arabinofuranosidase / beta-D-xyl 0.966 0.819 0.778 0.0
>gi|183579871|dbj|BAG28345.1| arabinofuranosidase [Citrus unshiu] Back     alignment and taxonomy information
 Score = 1253 bits (3242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/629 (96%), Positives = 611/629 (97%), Gaps = 7/629 (1%)

Query: 21  VVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGN 80
           VVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVL GKYAASYVR LQGN
Sbjct: 134 VVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGKYAASYVRRLQGN 193

Query: 81  TGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVM 140
           TGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVM
Sbjct: 194 TGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVM 253

Query: 141 CSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAI 200
           CSYNQVNGKPTCADPDILKNTI GQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAI
Sbjct: 254 CSYNQVNGKPTCADPDILKNTIRGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAI 313

Query: 201 KAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLG 260
           KAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLA AYTITVQMRLGMFDGEPSAQPFGNLG
Sbjct: 314 KAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLASAYTITVQMRLGMFDGEPSAQPFGNLG 373

Query: 261 PRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAG 320
           PRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAG
Sbjct: 374 PRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAG 433

Query: 321 VACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEA 380
           VACGYTTPLQGISRYAKTIHQAGC GVACNGNQLIGAAEVAARQADATVLVMGLDQSIEA
Sbjct: 434 VACGYTTPLQGISRYAKTIHQAGCLGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEA 493

Query: 381 EFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPG 440
           EFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPG
Sbjct: 494 EFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPG 553

Query: 441 QAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVV 500
           QAGGAAIADVLFGRANPGGKLPMTWYPQDYV+RLPMTDMRMRA RGYPGRTYRFYKGPVV
Sbjct: 554 QAGGAAIADVLFGRANPGGKLPMTWYPQDYVARLPMTDMRMRAGRGYPGRTYRFYKGPVV 613

Query: 501 FPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLH 560
           FPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLH
Sbjct: 614 FPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLH 673

Query: 561 VDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSV 620
           VD+KNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSV
Sbjct: 674 VDVKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSV 733

Query: 621 VDKFGIRRIP-------MGEHSLHIGDLK 642
           VDKFGIRRIP       +G  S+H+   K
Sbjct: 734 VDKFGIRRIPWVNIVSILGISSIHLSSSK 762

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111912|ref|XP_002316021.1| predicted protein [Populus trichocarpa] gi|222865061|gb|EEF02192.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224099193|ref|XP_002311398.1| predicted protein [Populus trichocarpa] gi|222851218|gb|EEE88765.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556320|ref|XP_002519194.1| Periplasmic beta-glucosidase precursor, putative [Ricinus communis] gi|223541509|gb|EEF43058.1| Periplasmic beta-glucosidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|408354266|gb|AFU54452.1| alpha-L-arabinofuranosidase/beta-D-xylosidase [Prunus salicina] Back     alignment and taxonomy information
>gi|408354264|gb|AFU54451.1| alpha-L-arabinofuranosidase/beta-D-xylosidase [Prunus salicina] Back     alignment and taxonomy information
>gi|298364130|gb|ADI79208.1| alpha-L-arabinofuranosidase/beta-D-xylosidase [Malus x domestica] Back     alignment and taxonomy information
>gi|157041199|dbj|BAF79669.1| beta-D-xylosidase [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|86553064|gb|AAS17751.2| beta xylosidase [Fragaria x ananassa] Back     alignment and taxonomy information
>gi|65736613|dbj|BAD98523.1| alpha-L-arabinofuranosidase / beta-D-xylosidase [Pyrus pyrifolia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query656
TAIR|locus:2157994774 BXL1 "beta-xylosidase 1" [Arab 0.958 0.812 0.735 8e-259
TAIR|locus:2196060768 BXL2 "beta-xylosidase 2" [Arab 0.957 0.817 0.690 8.6e-246
TAIR|locus:2174809784 XYL4 "beta-D-xylosidase 4" [Ar 0.949 0.794 0.589 7.3e-201
TAIR|locus:2144756773 BXL3 "AT5G09730" [Arabidopsis 0.948 0.804 0.569 5.9e-192
UNIPROTKB|P83344461 P83344 "Putative beta-D-xylosi 0.698 0.993 0.735 5.2e-184
TAIR|locus:2091236781 AT3G19620 [Arabidopsis thalian 0.932 0.783 0.533 1e-178
TAIR|locus:2029391767 AT1G78060 [Arabidopsis thalian 0.929 0.795 0.475 1.5e-168
TAIR|locus:2142434792 AT5G10560 [Arabidopsis thalian 0.858 0.710 0.443 8.8e-158
ASPGD|ASPL0000029139763 bxlB [Emericella nidulans (tax 0.798 0.686 0.420 9.9e-114
UNIPROTKB|Q5ATH9763 bxlB "Exo-1,4-beta-xylosidase 0.798 0.686 0.420 9.9e-114
TAIR|locus:2157994 BXL1 "beta-xylosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2491 (881.9 bits), Expect = 8.0e-259, P = 8.0e-259
 Identities = 468/636 (73%), Positives = 532/636 (83%)

Query:    21 VVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGN 80
             VVSDEARAMYNGG+AGLTYWSPNVNI RDPRWGRGQETPGEDP++  KYAASYVRGLQG 
Sbjct:   141 VVSDEARAMYNGGVAGLTYWSPNVNILRDPRWGRGQETPGEDPIVAAKYAASYVRGLQGT 200

Query:    81 T-GSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASV 139
               G+RLKVAACCKHYTAYDLDNWNGVDR+HFNA+V++QDLEDTYNVPFK+CV EGKVASV
Sbjct:   201 AAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVTQQDLEDTYNVPFKSCVYEGKVASV 260

Query:   140 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADA 199
             MCSYNQVNGKPTCAD ++LKNTI GQWRL+GYIVSDCDSV V +N QHYT TPEEAAA +
Sbjct:   261 MCSYNQVNGKPTCADENLLKNTIRGQWRLNGYIVSDCDSVDVFFNQQHYTSTPEEAAARS 320

Query:   200 IKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNL 259
             IKAGLDLDCGPFLAI TEGAV+ GLL E D+NLALA T+TVQMRLGMFDG  +  P+ NL
Sbjct:   321 IKAGLDLDCGPFLAIFTEGAVKKGLLTENDINLALANTLTVQMRLGMFDG--NLGPYANL 378

Query:   260 GPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA 319
             GPRDVCTP            GIVLLKNSAR+LPLS  RH TVAVIGPNSDVT TMIGNYA
Sbjct:   379 GPRDVCTPAHKHLALEAAHQGIVLLKNSARSLPLSPRRHRTVAVIGPNSDVTETMIGNYA 438

Query:   320 GVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIE 379
             G AC YT+PLQGISRYA+T+HQAGC GVAC GNQ  GAAE AAR+ADATVLVMGLDQSIE
Sbjct:   439 GKACAYTSPLQGISRYARTLHQAGCAGVACKGNQGFGAAEAAAREADATVLVMGLDQSIE 498

Query:   380 AEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYP 439
             AE  DR GLLLPG QQ+LV+RVA+ASRGPV+LVLM GGP+DV+FAKNDPR+ AI+W GYP
Sbjct:   499 AETRDRTGLLLPGYQQDLVTRVAQASRGPVILVLMSGGPIDVTFAKNDPRVAAIIWAGYP 558

Query:   440 GQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPV 499
             GQAGGAAIA+++FG ANPGGKLPMTWYPQDYV+++PMT M MRA+  YPGRTYRFYKGPV
Sbjct:   559 GQAGGAAIANIIFGAANPGGKLPMTWYPQDYVAKVPMTVMAMRASGNYPGRTYRFYKGPV 618

Query:   500 VFPFGHGMSYTTFAHTLSKAP-NQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLG 558
             VFPFG G+SYTTF H+L+K+P  Q SV ++    A      SS++I+V+HTNCN    + 
Sbjct:   619 VFPFGFGLSYTTFTHSLAKSPLAQLSVSLSNLNSANTILNSSSHSIKVSHTNCNSFPKMP 678

Query:   559 LHVDIKNTGDMAGTHTLLVFAKPPAGN---WSPNKQLIGFKKVHVTAGALQSVRLDIHVC 615
             LHV++ NTG+  GTHT+ VFA+PP         NKQLI F+KVHV AGA Q+V++D+  C
Sbjct:   679 LHVEVSNTGEFDGTHTVFVFAEPPINGIKGLGVNKQLIAFEKVHVMAGAKQTVQVDVDAC 738

Query:   616 KHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANL 651
             KHL VVD++G RRIPMGEH LHIGDLKH+I +Q  L
Sbjct:   739 KHLGVVDEYGKRRIPMGEHKLHIGDLKHTILVQPQL 774
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0010214 "seed coat development" evidence=IMP
GO:0046556 "alpha-N-arabinofuranosidase activity" evidence=IDA
TAIR|locus:2196060 BXL2 "beta-xylosidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174809 XYL4 "beta-D-xylosidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144756 BXL3 "AT5G09730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P83344 P83344 "Putative beta-D-xylosidase" [Prunus persica (taxid:3760)] Back     alignment and assigned GO terms
TAIR|locus:2091236 AT3G19620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029391 AT1G78060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142434 AT5G10560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000029139 bxlB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ATH9 bxlB "Exo-1,4-beta-xylosidase bxlB" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94KD8BXL2_ARATH3, ., 2, ., 1, ., -0.70120.95730.8177nono
A5JTQ3XYL2_MEDSV3, ., 2, ., 1, ., 5, 50.58220.94810.8036N/Ano
A5JTQ2XYL1_MEDSV3, ., 2, ., 1, ., 5, 50.58290.94960.8049N/Ano
P83344XYNB_PRUPE3, ., 2, ., 1, ., -0.75700.69810.9934N/Ano
Q9FGY1BXL1_ARATH3, ., 2, ., 1, ., 5, 50.750.95880.8126yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.370.914
3rd Layer3.2.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query656
PLN03080779 PLN03080, PLN03080, Probable beta-xylosidase; Prov 0.0
PRK15098765 PRK15098, PRK15098, beta-D-glucoside glucohydrolas 3e-78
pfam01915221 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase fam 2e-63
pfam00933296 pfam00933, Glyco_hydro_3, Glycosyl hydrolase famil 6e-49
COG1472397 COG1472, BglX, Beta-glucosidase-related glycosidas 6e-46
pfam1431071 pfam14310, Fn3-like, Fibronectin type III-like dom 4e-10
>gnl|CDD|178629 PLN03080, PLN03080, Probable beta-xylosidase; Provisional Back     alignment and domain information 
 Score =  745 bits (1924), Expect = 0.0
 Identities = 311/647 (48%), Positives = 433/647 (66%), Gaps = 22/647 (3%)

Query: 22  VSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT 81
           ++ EARAMYN G AGLT+W+PN+NIFRDPRWGRGQETPGEDP +   Y+  +V+G QG  
Sbjct: 136 IAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKGFQGGK 195

Query: 82  ---------GSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVV 132
                      +L ++ACCKHYTAYDL+ W    RY FNA V++QD+EDTY  PFK+C+ 
Sbjct: 196 WKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQ 255

Query: 133 EGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTP 192
           EGK + +MCSYNQVNG P CA  D+L+     +W   GYI SDCD+V  ++  Q YT++P
Sbjct: 256 EGKASCLMCSYNQVNGVPACARKDLLQKA-RDEWGFQGYITSDCDAVATIFEYQTYTKSP 314

Query: 193 EEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPS 252
           E+A AD +KAG+D++CG ++  HT+ A+  G ++EED++ AL    +VQ+RLG+FDG+P 
Sbjct: 315 EDAVADVLKAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPR 374

Query: 253 AQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTV 312
              +G LGP +VCT  H++LAL+AA QGIVLLKN  + LPL+     ++A+IGP ++   
Sbjct: 375 NGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPMANDPY 434

Query: 313 TMIGNYAGVACGYTTPLQGISRYA-KTIHQAGCFGVACNGNQLIGAAEVAARQADATVLV 371
            + G+Y GV C  TT  +G+  Y  KT   AGC  V+CN +   G A   A++AD  V+V
Sbjct: 435 NLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVV 494

Query: 372 MGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIG 431
            GLD S E E  DR  LLLPG+Q +L+S VA  S+ PVVLVL  GGPVDVSFAK DPRI 
Sbjct: 495 AGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIA 554

Query: 432 AILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA--ARGYPG 489
           +ILW+GYPG+ GG A+A+++FG  NPGG+LPMTWYP+ + + +PMTDM MRA  +RGYPG
Sbjct: 555 SILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPG 613

Query: 490 RTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVP--IATSLYAFKNTTISSNAIRVA 547
           RTYRFY G VV+ FG+G+SYT F++ +  AP + S+         + K      + +   
Sbjct: 614 RTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSISRKPLLQRRDELDYV 673

Query: 548 HTN----CNDAMSLGLHVDIKNTGDMAGTHTLLVFAK-PPAGNWSPNKQLIGFKKVHVTA 602
                  C +++   +H+ + N G+M G+H +++F++ PP     P KQL+GF +VH  +
Sbjct: 674 QIEDIASC-ESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTAS 732

Query: 603 GALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA 649
           G      + +  CKHLSV ++ G R +P+G+H L +GDL+HS+S++ 
Sbjct: 733 GRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779

Length = 779
>gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|216783 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal domain Back     alignment and domain information
>gnl|CDD|216204 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain Back     alignment and domain information
>gnl|CDD|224389 COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|222669 pfam14310, Fn3-like, Fibronectin type III-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 656
PLN03080779 Probable beta-xylosidase; Provisional 100.0
PRK15098765 beta-D-glucoside glucohydrolase; Provisional 100.0
COG1472397 BglX Beta-glucosidase-related glycosidases [Carboh 100.0
PF00933299 Glyco_hydro_3: Glycosyl hydrolase family 3 N termi 100.0
PRK05337337 beta-hexosaminidase; Provisional 100.0
PF01915227 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-ter 100.0
PF1431071 Fn3-like: Fibronectin type III-like domain; PDB: 3 99.82
PF07705101 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic 96.21
PF1269082 BsuPI: Intracellular proteinase inhibitor; InterPr 95.43
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 94.28
PF14874102 PapD-like: Flagellar-associated PapD-like 90.58
cd00407101 Urease_beta Urease beta-subunit; Urease is a nicke 89.81
TIGR00192101 urease_beta urease, beta subunit. In a number of s 88.81
PRK13203102 ureB urease subunit beta; Reviewed 87.85
PRK13202104 ureB urease subunit beta; Reviewed 86.71
PF00699100 Urease_beta: Urease beta subunit CAUTION: The Pros 86.0
COG1470 513 Predicted membrane protein [Function unknown] 83.97
PRK13198158 ureB urease subunit beta; Reviewed 83.65
PRK13201136 ureB urease subunit beta; Reviewed 83.55
PRK13204159 ureB urease subunit beta; Reviewed 83.41
COG0486454 ThdF Predicted GTPase [General function prediction 83.15
PRK13205162 ureB urease subunit beta; Reviewed 81.21
>PLN03080 Probable beta-xylosidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.5e-148  Score=1283.67  Aligned_cols=641  Identities=49%  Similarity=0.928  Sum_probs=556.8

Q ss_pred             CCCCCChHHHH--------HHHHHHHHHHHHhhhcCCCccceeeCccccccCCCCCCccccccCCCHHHHHHHHHHHHHH
Q 006224            5 LPPFYCSICLD--------TRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRG   76 (656)
Q Consensus         5 ~~~~P~~~~la--------~~~g~~~a~E~ra~~~~Gi~~~~~laP~vdi~r~p~~gr~~e~fgeDP~l~~~~a~a~v~G   76 (656)
                      .|.||+++++|        +++|+++|+|+|++++.|.+|+++|+|++||+|||||||++|||||||+|+++|++|||+|
T Consensus       111 aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~a~V~G  190 (779)
T PLN03080        111 ATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKG  190 (779)
T ss_pred             ceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHHHHHHHH
Confidence            58899999987        9999999999999965543356668999999999999999999999999999999999999


Q ss_pred             HccCC---------CCCCceEEeeccccccCCCCCCCCCccccccccCHHHHHhhccHHHHHHHHcCCcceEeeccccCC
Q 006224           77 LQGNT---------GSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVN  147 (656)
Q Consensus        77 ~Q~~~---------~~~~gV~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~L~e~~l~pF~~ai~~g~~~~vM~sy~~vn  147 (656)
                      +|+.+         .++.+|+||+||||||+++.+.+.+|...++.+++++|+|+||+||+++|++|.+.+||||||++|
T Consensus       191 lQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~vn  270 (779)
T PLN03080        191 FQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQVN  270 (779)
T ss_pred             hcCCCcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcCcC
Confidence            99852         133459999999999999877777888889999999999999999999999998889999999999


Q ss_pred             CcccccCHHHHHHhhhhcCCCCcEEEcChhhhhhhhccccccCChHHHHHHHHHcCCCcCCchhhHHHHHHHHHCCCCCH
Q 006224          148 GKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLRE  227 (656)
Q Consensus       148 g~pa~~s~~ll~~lLR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~e~~~~al~AG~D~~~~~~~~~~l~~av~~g~v~~  227 (656)
                      |+|||.|++||++ ||+||||+|+|||||++|..+...|++..+.+|++++||+||+||+|...+.+.|.+||++|+|++
T Consensus       271 G~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~av~~G~i~e  349 (779)
T PLN03080        271 GVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEKGKVQE  349 (779)
T ss_pred             CccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHcCCCCH
Confidence            9999999999986 999999999999999999999988888778999999999999999998877889999999999999


Q ss_pred             HHHHHHhhhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcceecccCCCCCCCcCCCCcEEEEEccC
Q 006224          228 EDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPN  307 (656)
Q Consensus       228 ~~ld~av~Ril~~k~~~Glf~~~p~~~~~~~~~~~~~~~~~~~~la~~~A~eSiVLLKN~~~~LPL~~~~~~kIaviGp~  307 (656)
                      ++||+||+|||++|+++|+|+.+|...++.+.....+++++|+++|+++|++|||||||++++|||++.+.++|+||||+
T Consensus       350 ~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~IaViGp~  429 (779)
T PLN03080        350 EDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPM  429 (779)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEEEECCC
Confidence            99999999999999999999944433334444456678999999999999999999999999999987656799999999


Q ss_pred             CccccccccccCCCCCccCCHHHHHHHHh-chhhcccCCccccCCcccHHHHHHHhhcCCEEEEEEeCCCccccccCCCC
Q 006224          308 SDVTVTMIGNYAGVACGYTTPLQGISRYA-KTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRA  386 (656)
Q Consensus       308 a~~~~~~~G~~~g~~~~~~t~le~l~~~~-~~~y~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~  386 (656)
                      |+....++|+|.+.+++.++++++|+++. .+.|..||....+.+...+++|+++|++||+||||+|.+...++|+.||.
T Consensus       430 A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~  509 (779)
T PLN03080        430 ANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRV  509 (779)
T ss_pred             CCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcc
Confidence            99988888889888888999999999975 46788888655444456788999999999999999999988999999999


Q ss_pred             CccCChhHHHHHHHHHHhcCCCEEEEEecCcceeccccccCCCccEEEEecCCCchhHHHHHHHHhCCCCCCcccCcccC
Q 006224          387 GLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWY  466 (656)
Q Consensus       387 ~l~Lp~~Q~~Li~~v~~~~~kpvVvVl~~g~P~~l~~~~~~~~v~AiL~a~~~G~~~g~AlAdVL~G~~nPsGkLPvT~~  466 (656)
                      +|.||+.|.+||++|++++++|||||+++|+|++|+|+.+.++++|||++|||||++|+||||||||++|||||||+|||
T Consensus       510 ~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~~  589 (779)
T PLN03080        510 SLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWY  589 (779)
T ss_pred             cccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeeec
Confidence            99999999999999998777799999999999999998766789999999999999999999999999999999999998


Q ss_pred             CccccCCCCCccccccc--cCCCCCCcccccCCCcccccCcCCCCCCceecCCccCCCcccccccccccccccccc----
Q 006224          467 PQDYVSRLPMTDMRMRA--ARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTIS----  540 (656)
Q Consensus       467 p~~~~~~~p~~~~~~~~--~~~~~~~~Yr~~~~~~~ypFG~GLSYTtF~ys~l~~~~~~~~~~~~~~~~~~~~~~~----  540 (656)
                      |+++ .++|++|+++++  ..+|++++||||+.+|+||||||||||||+||+++++...+....... +.......    
T Consensus       590 p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  667 (779)
T PLN03080        590 PESF-TAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQ-DSISRKPLLQRR  667 (779)
T ss_pred             cccc-ccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEeccccccccccccccccc-cccccccccccc
Confidence            9988 789998887754  356899999999999999999999999999999975431111100000 00000000    


Q ss_pred             --cccccccc-ccCCCCccEEEEEEEEeCCCCCcceEEEEEEeCCCCC-CCchhhhhcccccccCCCCeEEEEEEecCCC
Q 006224          541 --SNAIRVAH-TNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCK  616 (656)
Q Consensus       541 --~~~~~~~~-~~~~~~~~~~v~v~VtNtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~  616 (656)
                        ....++.. ..|+.. .++|+|+|||||+++|+||||||+++|.+. .+|+|||+||+||+|+||||++|+|+|++++
T Consensus       668 ~~~~~~~~~~~~~~~~~-~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~  746 (779)
T PLN03080        668 DELDYVQIEDIASCESL-RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCK  746 (779)
T ss_pred             cccccccccccccCCCc-eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchH
Confidence              00000000 112222 489999999999999999999999999875 8999999999999999999999999999657


Q ss_pred             CceEEeCCCCEEecCeEEEEEEecCCceeEEEE
Q 006224          617 HLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA  649 (656)
Q Consensus       617 ~ls~~d~~~~~~~~~G~y~i~vG~ss~~~~~~~  649 (656)
                      +|++||++++|++|+|+|+|+||.++|++++++
T Consensus       747 ~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~  779 (779)
T PLN03080        747 HLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI  779 (779)
T ss_pred             HceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence            999999999999999999999999999998864

>PRK15098 beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK05337 beta-hexosaminidase; Provisional Back     alignment and domain information
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3 Back     alignment and domain information
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A Back     alignment and domain information
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins Back     alignment and domain information
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide Back     alignment and domain information
>TIGR00192 urease_beta urease, beta subunit Back     alignment and domain information
>PRK13203 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13202 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3 Back     alignment and domain information
>COG1470 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PRK13198 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13201 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13204 ureB urease subunit beta; Reviewed Back     alignment and domain information
>COG0486 ThdF Predicted GTPase [General function prediction only] Back     alignment and domain information
>PRK13205 ureB urease subunit beta; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query656
2x40_A721 Structure Of Beta-Glucosidase 3b From Thermotoga Ne 5e-32
4i8d_A714 Crystal Structure Of Beta-D-Glucoside Glucohydrolas 5e-31
2x42_A721 Structure Of Beta-Glucosidase 3b From Thermotoga Ne 5e-31
3zyz_A713 Crystal Structure Of A Glycoside Hydrolase Family 3 6e-31
3rrx_A822 Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Bet 2e-26
3usz_A822 Crystal Structure Of Truncated Exo-1,31,4-Beta-Gluc 2e-26
3ac0_A845 Crystal Structure Of Beta-Glucosidase From Kluyvero 4e-26
3abz_A845 Crystal Structure Of Se-Met Labeled Beta-Glucosidas 7e-26
4i3g_A829 Crystal Structure Of Desr, A Beta-glucosidase From 5e-24
4i3g_A829 Crystal Structure Of Desr, A Beta-glucosidase From 3e-15
1ex1_A605 Beta-D-Glucan Exohydrolase From Barley Length = 605 7e-18
1lq2_A602 Crystal Structure Of Barley Beta-D-Glucan Glucohydr 8e-18
3tev_A351 The Crystal Structure Of Glycosyl Hydrolase From De 5e-04
3bmx_A642 Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis 8e-04
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Glycerol Length = 721 Back     alignment and structure 
Iteration: 1

 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 175/682 (25%), Positives = 275/682 (40%), Gaps = 158/682 (23%)
Query: 41  SPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLD 100
           +P +NI R+P  GR  E   EDPVL+G+ A+S+V+G+Q        V AC KH+ A    
Sbjct: 117 APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG-----VGACIKHFVA---- 167
Query: 101 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKN 160
           N    +R   +  VS++ L + Y   F+  V + K  SVM +YN++NGK    +  +LK 
Sbjct: 168 NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKK 227
Query: 161 TIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDC-GPFLAIHTE-- 217
            +  +W  +G+++SD           +    P     + +KAG DL   G    ++TE  
Sbjct: 228 VLREEWGFEGFVMSDW----------YAGDNP----VEQLKAGNDLIMPGKAYQVNTERR 273
Query: 218 -------GAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXX 270
                   A++ G L EE ++  +   + V +        PS + +      D+      
Sbjct: 274 DEIEEIMEALKEGKLSEEVLDECVRNILKVLVNA------PSFKNYRYSNKPDL--EKHA 325
Query: 271 XXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP-- 328
                    G+VLL+N    LPLS   +  +A+ G     T+       G   G T P  
Sbjct: 326 KVAYEAGAEGVVLLRNE-EALPLS--ENSKIALFGTGQIETIK-----GGTGSGDTHPRY 377
Query: 329 ----LQGISR---------------YAKTIHQAGCFGVACNG----------NQLIGAAE 359
               L+GI                 Y K + +   +    +              +   E
Sbjct: 378 AISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKE 437
Query: 360 V--AARQADATVLVMGLDQSIEAEFIDR----AGLLLPGRQQELVSRVAKA--SRGPVVL 411
           +   A++ D  V+V+     I  E  DR        L   + +L+  V++    +G  V+
Sbjct: 438 IHKLAKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVI 494
Query: 412 VLM-CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDY 470
           VL+  G PV+V   ++   +  IL V   GQ  G  +ADVL GR NP GKLP T +P+DY
Sbjct: 495 VLLNIGSPVEVVSWRD--LVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDY 551
Query: 471 VSRLPMTDMRMRAARGYPGRT----------------YRFYKGPVVFP---FGHGMSYTT 511
            S +P        +  +PG                  YR+Y    V P   FG+G+SYTT
Sbjct: 552 -SDVP--------SWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTT 602
Query: 512 FAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAG 571
           F                   Y+  N +     +RV +              I+NTG  AG
Sbjct: 603 FE------------------YSDLNVSFDGETLRVQYR-------------IENTGGRAG 631
Query: 572 THTLLVFAKPPAGNW-SPNKQLIGFKKVH-VTAGALQSVRLDIHVCKHLSVVDKFGIRRI 629
                V+ K P G    P ++L  F K   +  G  + V L+I V    S   +  +  +
Sbjct: 632 KEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEEWV--V 689
Query: 630 PMGEHSLHIGDLKHSISLQANL 651
             GE+ + +G    +I L+   
Sbjct: 690 EAGEYEVRVGASSRNIKLKGTF 711
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From Trichoderma Reesei Length = 714 Back     alignment and structure
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose Length = 721 Back     alignment and structure
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3 Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a Resolution. Length = 713 Back     alignment and structure
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 Back     alignment and structure
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 Back     alignment and structure
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces Marxianus In Complex With Glucose Length = 845 Back     alignment and structure
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From Kluyveromyces Marxianus Length = 845 Back     alignment and structure
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 Back     alignment and structure
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 Back     alignment and structure
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley Length = 605 Back     alignment and structure
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole Length = 602 Back     alignment and structure
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From Deinococcus Radiodurans R1 Length = 351 Back     alignment and structure
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis Length = 642 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query656
2x41_A721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 1e-138
3rrx_A822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 1e-120
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 1e-114
3abz_A 845 Beta-glucosidase I; glycoside hydrolase family3 be 4e-73
3abz_A845 Beta-glucosidase I; glycoside hydrolase family3 be 8e-55
3bmx_A642 Uncharacterized lipoprotein YBBD; beta-N-hexosamin 3e-36
3sql_A535 Glycosyl hydrolase family 3; structural genomics, 1e-17
2oxn_A340 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: O 2e-11
4g6c_A342 Beta-hexosaminidase 1; ssgcid, niaid, structural g 9e-09
3tev_A351 Glycosyl hyrolase, family 3; PSI-biology, midwest 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Length = 721 Back     alignment and structure
 Score =  419 bits (1079), Expect = e-138
 Identities = 154/669 (23%), Positives = 251/669 (37%), Gaps = 128/669 (19%)

Query: 40  WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDL 99
            +P +NI R+P  GR  E   EDPVL+G+ A+S+V+G+Q        V AC KH+ A + 
Sbjct: 116 LAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQ-----GVGACIKHFVANNQ 170

Query: 100 DNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILK 159
           +      R   +  VS++ L + Y   F+  V + K  SVM +YN++NGK    +  +LK
Sbjct: 171 ETN----RMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLK 226

Query: 160 NTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG---------- 209
             +  +W  +G+++SD  +               +   + +KAG DL             
Sbjct: 227 KVLREEWGFEGFVMSDWYAG--------------DNPVEQLKAGNDLIMPGKAYQVNTER 272

Query: 210 PFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAH 269
                    A++ G L EE ++  +   + V +    F     +               H
Sbjct: 273 RDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFKNYRYSNKPD--------LEKH 324

Query: 270 QQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYT-TP 328
            ++A +A  +G+VLL+N    LPLS      +A+ G     T+            Y  + 
Sbjct: 325 AKVAYEAGAEGVVLLRNE-EALPLSENS--KIALFGTGQIETIKGGTGSGDTHPRYAISI 381

Query: 329 LQGISRYAKTIHQAGCFGVACNGN---------------------------QLIGAAEVA 361
           L+GI        +                                               
Sbjct: 382 LEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEIHKL 441

Query: 362 ARQADATVLVMGLDQSIEAEFIDRAG----LLLPGRQQELVSRVAKASRG---PVVLVLM 414
           A++ D  V+V+        E  DR        L   + +L+  V++        V+++L 
Sbjct: 442 AKKNDVAVIVISRISG---EGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLN 498

Query: 415 CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW------YPQ 468
            G PV+V   ++      IL V   GQ  G  +ADVL GR NP GKLP T+       P 
Sbjct: 499 IGSPVEVVSWRDLV--DGILLVWQAGQETGRIVADVLTGRINPSGKLPTTFPRDYSDVPS 556

Query: 469 DYVSRLPMTDMRMRAARGYPGRTYRFY---KGPVVFPFGHGMSYTTFAHTLSKAPNQFSV 525
                 P  + +           YR+Y        + FG+G+SYTTF             
Sbjct: 557 WTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFE------------ 604

Query: 526 PIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN 585
                   + +  +S            D  +L +   I+NTG  AG     V+ K P G 
Sbjct: 605 --------YSDLNVSF-----------DGETLRVQYRIENTGGRAGKEVSQVYIKAPKGK 645

Query: 586 WS-PNKQLIGFKKVHV-TAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKH 643
              P ++L  F K  +   G  + V L+I V + L+  +      +  GE+ + +G    
Sbjct: 646 IDKPFQELKAFHKTRLLNPGESEEVVLEIPV-RDLASFNG-EEWVVEAGEYEVRVGASSR 703

Query: 644 SISLQANLE 652
           +I L+    
Sbjct: 704 NIKLKGTFS 712
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Length = 822 Back     alignment and structure
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Length = 602 Back     alignment and structure
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Back     alignment and structure
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Back     alignment and structure
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Length = 642 Back     alignment and structure
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Length = 535 Back     alignment and structure
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Length = 340 Back     alignment and structure
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} Length = 351 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query656
3abz_A845 Beta-glucosidase I; glycoside hydrolase family3 be 100.0
3zyz_A713 Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.1 100.0
2x41_A721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 100.0
3rrx_A822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 100.0
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 100.0
3bmx_A642 Uncharacterized lipoprotein YBBD; beta-N-hexosamin 100.0
3sql_A535 Glycosyl hydrolase family 3; structural genomics, 100.0
3tev_A351 Glycosyl hyrolase, family 3; PSI-biology, midwest 100.0
4gvf_A349 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: N 100.0
2oxn_A340 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: O 100.0
4g6c_A348 Beta-hexosaminidase 1; ssgcid, niaid, structural g 100.0
3idu_A127 Uncharacterized protein; all beta-protein, structu 96.68
2kut_A122 Uncharacterized protein; structural genomics, PSI- 96.12
2l0d_A114 Cell surface protein; structural genomics, northea 95.76
3isy_A120 Bsupi, intracellular proteinase inhibitor; intrace 93.02
1w8o_A 601 Bacterial sialidase; 3D-structure, glycosidase, hy 86.89
4ep8_B101 Urease subunit beta; alpha-beta barrel, nickel met 86.27
1yew_A382 Particulate methane monooxygenase, B subunit; memb 86.04
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 84.89
2x3c_A 343 Toxic extracellular endopeptidase; hydrolase; 1.99 84.75
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, 83.72
4ac7_B126 Urease subunit beta; hydrolase, bacillus pasteurii 82.25
4ubp_B126 Protein (urease (chain B)); bacillus pasteurii, ni 82.25
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Back     alignment and structure
Probab=100.00  E-value=5.1e-138  Score=1210.26  Aligned_cols=572  Identities=30%  Similarity=0.447  Sum_probs=499.7

Q ss_pred             cCCCCCChHHHH--------HHHHHHHHHHHHhhhcCCCccceeeCccccccCCCCCCccccccCCCHHHHHHHHHHHHH
Q 006224            4 NLPPFYCSICLD--------TRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVR   75 (656)
Q Consensus         4 ~~~~~P~~~~la--------~~~g~~~a~E~ra~~~~Gi~~~~~laP~vdi~r~p~~gr~~e~fgeDP~l~~~~a~a~v~   75 (656)
                      ++|.||++++||        +++|+++|+|+|++   |+ +++| ||++||.|||+|||++|||||||+|+++||.|+|+
T Consensus        60 ~~t~fP~~~~laat~d~~l~~~~g~~~g~E~ra~---Gi-~~~l-aP~vdi~r~P~~gR~~EsfgeDP~lv~~~a~a~v~  134 (845)
T 3abz_A           60 PSGCFPNGTGLASTFDRDLLETAGKLMAKESIAK---NA-AVIL-GPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVK  134 (845)
T ss_dssp             CBCCCCCHHHHHHTCCHHHHHHHHHHHHHHHHHT---TC-SEEE-CCBCCCCSSTTCTTGGGSCCSSHHHHHHHHHHHHH
T ss_pred             CcCcCcCHHHHHhcCCHHHHHHHHHHHHHHHHHc---CC-CEEe-cceECCCcCCCCCcccccCCCCHHHHHHHHHHHHH
Confidence            479999999987        89999999999999   77 6665 99999999999999999999999999999999999


Q ss_pred             HHccCCCCCCceEEeeccccccCCCCCCCCCccccccccCHHHHHhhccHHHHHHHHcCCcceEeeccccCCCcccccCH
Q 006224           76 GLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADP  155 (656)
Q Consensus        76 G~Q~~~~~~~gV~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~L~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~  155 (656)
                      |||+.     ||+||+|||||||++    .+|+..++.+++++|+|+||+||+++|+++++.+||||||++||+|||+|+
T Consensus       135 GlQ~~-----gV~a~~KHFpg~g~e----~~r~~~~~~v~~~~L~e~~L~PF~~ai~~ag~~~VM~syn~ing~pa~~s~  205 (845)
T 3abz_A          135 GMQGE-----GIAATVKHFVCNDLE----DQRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSK  205 (845)
T ss_dssp             HHHHT-----TCBCEEEEETTCCCC----TTTTTCEEECCHHHHHHTTSHHHHHHHHHHCCSEEEECSSEETTEEGGGCH
T ss_pred             HHhhC-----CeeEEeeccccCCcc----cCCccccCCCCHHHHHHhhHHHHHHHHHhcCCCEEEecCCCcCCEeccCCH
Confidence            99998     899999999999975    357777889999999999999999999755599999999999999999999


Q ss_pred             HHHHHhhhhcCCCCcEEEcChhhhhhhhccccccCChHHHHHHHHHcCCCcCCch---hhH-HHHHHHHHCCC-CCHHHH
Q 006224          156 DILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGP---FLA-IHTEGAVRGGL-LREEDV  230 (656)
Q Consensus       156 ~ll~~lLR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~e~~~~al~AG~D~~~~~---~~~-~~l~~av~~g~-v~~~~l  230 (656)
                      +||++|||+||||+|+|||||+++.              ++++|++||+||+|+.   ++. +.|.+||++|+ +++++|
T Consensus       206 ~ll~~lLR~e~GF~G~VvSD~~~~~--------------~~~~Al~AG~D~~m~~~~~~~~~~~l~~av~~G~~i~~~~i  271 (845)
T 3abz_A          206 KLLIDILRDEWKWDGMLMSDWFGTY--------------TTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDV  271 (845)
T ss_dssp             HHHTCCCCCCTCCCSEEECCTTCCC--------------CSHHHHHHTCCBBCSSSCSSCCHHHHHHHHHTTCSCCHHHH
T ss_pred             HHHHHHHhhccCCCeEEEcccccHH--------------HHHHHHHcCCCcccCCchhhhHHHHHHHHHHcCccchHHHH
Confidence            9999999999999999999998762              2478999999999962   223 38999999999 999999


Q ss_pred             HHHhhhhHHHHHHhc----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcceecccCCCCCCCcCCCCcEEEEEcc
Q 006224          231 NLALAYTITVQMRLG----MFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGP  306 (656)
Q Consensus       231 d~av~Ril~~k~~~G----lf~~~p~~~~~~~~~~~~~~~~~~~~la~~~A~eSiVLLKN~~~~LPL~~~~~~kIaviGp  306 (656)
                      |+||+|||++|+++|    +|+ +|+..+    ....+++++|+++|+++|++|||||||++++|||++  .+||+||||
T Consensus       272 d~av~RIL~~k~~~g~l~~~~~-~p~~~~----~~~~~~~~~~~~la~~~a~~sivLLKN~~~~LPL~~--~~~iaviGp  344 (845)
T 3abz_A          272 DDRVRQVLKMIKFVVDNLEKTG-IVENGP----ESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKK--EDNIIVIGP  344 (845)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHC-CCTTCC----CCCTTCSHHHHHHHHHHHHHHCEEEEECTTCCSCCT--TSCEEEEST
T ss_pred             HHHHHHHHHHHHHhCCcccccc-CCccCc----cccccCCHHHHHHHHHHHHhCcEEeccCCcccCCCC--CCEEEEEcC
Confidence            999999999999999    898 554221    122377999999999999999999999999999975  479999999


Q ss_pred             CCccccccccccC-CCCCccCCHHHHHHHHh--chhhcccCCcc------------------------------------
Q 006224          307 NSDVTVTMIGNYA-GVACGYTTPLQGISRYA--KTIHQAGCFGV------------------------------------  347 (656)
Q Consensus       307 ~a~~~~~~~G~~~-g~~~~~~t~le~l~~~~--~~~y~~g~~~~------------------------------------  347 (656)
                      +|+....++|++. ..+.+.++++++|+++.  .+.|..||...                                    
T Consensus       345 ~A~~~~~~Gggs~~~~~~~~vtpl~gi~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~~~~~~~~~  424 (845)
T 3abz_A          345 NAKAKTSSGGGSASMNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEE  424 (845)
T ss_dssp             TTSCCCCSCBSTTCCCBSCCCCHHHHHHHHHTSCCEEECCCCCCSSCCBSGGGEESSTTSCSCTTTBSEEEEEESSCTTT
T ss_pred             CcchhhccCCCccCcccCCcCCHHHHHHHhhcCceeeccccccccccccccccccccccccccCCCCceEEEEeccCccc
Confidence            9999876665554 35788999999999874  24455544200                                    


Q ss_pred             c-------------------------------------------------------------------------------
Q 006224          348 A-------------------------------------------------------------------------------  348 (656)
Q Consensus       348 ~-------------------------------------------------------------------------------  348 (656)
                      .                                                                               
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~l~idg~~v~~~~~~~~~~  504 (845)
T 3abz_A          425 RSDDEEPFHVTKVNRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSGLFYLNDELIIDQKHNQERG  504 (845)
T ss_dssp             SCTTCCCSEEEEECSSEEECTTCCCTTSBTTBCCCEEEEEEEECCSSSEEEEEEEEEESEEEEEETTEEEEEESSSCCBC
T ss_pred             CcccccceeeeeccccceeecccccccccccccceeEEEEEEEecCCCccEEEEEeecCceEEEECCEEEeecccccccc
Confidence            0                                                                               


Q ss_pred             ----------------------------c------------------------CC-cccHHHHHHHhhcCCEEEEEEeCC
Q 006224          349 ----------------------------C------------------------NG-NQLIGAAEVAARQADATVLVMGLD  375 (656)
Q Consensus       349 ----------------------------~------------------------~~-~~~~~~a~~~a~~aD~vIv~~G~~  375 (656)
                                                  .                        .+ ...+++|+++|++||++|||+|.+
T Consensus       505 ~~~~~~~~~~~~~~~~l~~g~~y~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Av~~A~~ADvvVv~vG~~  584 (845)
T 3abz_A          505 SFCFGAGTKERTKKLTLKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLN  584 (845)
T ss_dssp             STTTTTSBCCEEEEEEECTTCCEEEEEEEECTTTSCCSSCCCCCEEEEEEEECCCHHHHHHHHHHHHHTSSEEEEEEECC
T ss_pred             ccccccCcccceeEEEecCCceeeEEEEeccCCcccccccccccceeecccccccchhhHHHHHHHHhcCCEEEEEEecC
Confidence                                        0                        00 123678899999999999999999


Q ss_pred             CccccccCCCCCccCChhHHHHHHHHHHhcCCCEEEEEecCcceeccccccCCCccEEEEecCCCchhHHHHHHHHhCCC
Q 006224          376 QSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRA  455 (656)
Q Consensus       376 ~~~~~Eg~Dr~~l~Lp~~Q~~Li~~v~~~~~kpvVvVl~~g~P~~l~~~~~~~~v~AiL~a~~~G~~~g~AlAdVL~G~~  455 (656)
                      +..++||.||++|.||+.|.+||++|+++ +||||||+++|+|++|+|+   ++++|||++|||||++|+||||||||++
T Consensus       585 ~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a~-~~~tVVVl~sG~pv~m~w~---~~v~AIL~aw~pGqegG~AiAdVLfG~v  660 (845)
T 3abz_A          585 GEWETEGYDRENMDLPKRTNELVRAVLKA-NPNTVIVNQSGTPVEFPWL---EDANALVQAWYGGNELGNAIADVLYGDV  660 (845)
T ss_dssp             TTTSBTTBCCSSSCCCTTHHHHHHHHHHH-CSCEEEEEECSSCCCCTTG---GGCSEEEECCCCCTTHHHHHHHHHTTSS
T ss_pred             CccccccCCcccccCCHHHHHHHHHHHHh-CCCEEEEEeCCCcccCcch---hccCeEEEcCCCcHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999986 5799999999999999997   3799999999999999999999999999


Q ss_pred             CCCcccCcccCCccccCCCCCccccccc---cCCCCC---CcccccC---CCcccccCcCCCCCCceec--CCccCCCcc
Q 006224          456 NPGGKLPMTWYPQDYVSRLPMTDMRMRA---ARGYPG---RTYRFYK---GPVVFPFGHGMSYTTFAHT--LSKAPNQFS  524 (656)
Q Consensus       456 nPsGkLPvT~~p~~~~~~~p~~~~~~~~---~~~~~~---~~Yr~~~---~~~~ypFG~GLSYTtF~ys--~l~~~~~~~  524 (656)
                      |||||||+|| |++. +|+|.++ ++..   ...|.+   .+||||+   .+|+||||||||||||+||  ++++.    
T Consensus       661 NPSGkLP~T~-p~~~-~d~P~~~-~~~~~~g~~~y~eg~~vgYR~y~~~~~~plfPFG~GLSYTtF~ys~~~l~v~----  733 (845)
T 3abz_A          661 VPNGKLSLSW-PFKL-QDNPAFL-NFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVT----  733 (845)
T ss_dssp             CCCCCCSSCB-CSSG-GGSTTTT-SCSCBTTEEECTTTTCCTHHHHHHHTCCCSBCTTCCBCSSCEEEEEEEEEEC----
T ss_pred             CCCCCCceee-eCch-hhCCccc-cCCCCCCceeccCCccCCCcchhcCCCceeecccCCCcceeEEEeccccccc----
Confidence            9999999997 8887 7788643 2211   111222   4699997   6899999999999999999  98741    


Q ss_pred             ccccccccccccccccccccccccccCCCCccEEEEEEEEeCC-CCCcceEEEEEEeCCCCC-CCchhhhhcccccccCC
Q 006224          525 VPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTG-DMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTA  602 (656)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG-~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~p  602 (656)
                                                  +. .++|+|+||||| +++|+||||||+++|.++ .+|+||||||+||+|+|
T Consensus       734 ----------------------------~~-~~~v~v~V~NtG~~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~p  784 (845)
T 3abz_A          734 ----------------------------DD-KIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEP  784 (845)
T ss_dssp             ----------------------------SS-EEEEEEEEEECCSSCCEEEEEEEEEEESSCSSCCCSCEEEEEEEEEECT
T ss_pred             ----------------------------CC-eEEEEEEEEECCcCCCcceeeeeeEeCCCCCcchhhheeccceeEEECC
Confidence                                        11 689999999999 999999999999999876 89999999999999999


Q ss_pred             CCeEEEEEEec-CCCCceEEeCC-CCEEecCeEEEEEEecCCceeEEEEEe
Q 006224          603 GALQSVRLDIH-VCKHLSVVDKF-GIRRIPMGEHSLHIGDLKHSISLQANL  651 (656)
Q Consensus       603 Ges~~V~~~l~-~~~~ls~~d~~-~~~~~~~G~y~i~vG~ss~~~~~~~~~  651 (656)
                      |||++|+|+|+ . ++|++||+. +.|++|+|+|+|+||.||+|++++.++
T Consensus       785 Ges~~V~~~l~~~-~~l~~~d~~~~~~~~e~G~y~v~vG~ss~di~l~~~~  834 (845)
T 3abz_A          785 GEKKTVNIDLELK-DAISYFNEELGKWHVEAGEYLVSVGTSSDDILSVKEF  834 (845)
T ss_dssp             TCEEEEEEEEEHH-HHHCEEETTTTEEEECSEEEEEEEESSTTCEEEEEEE
T ss_pred             CCEEEEEEEeCCh-HHeeEEecCCCeEEEcCCEEEEEEECCCCCceeEEEE
Confidence            99999999999 8 899999996 789999999999999999999877654
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A* Back     alignment and structure
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Back     alignment and structure
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Back     alignment and structure
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Back     alignment and structure
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Back     alignment and structure
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Back     alignment and structure
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A* Back     alignment and structure
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Back     alignment and structure
>4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A* Back     alignment and structure
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A Back     alignment and structure
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens} Back     alignment and structure
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans} Back     alignment and structure
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis} Back     alignment and structure
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Back     alignment and structure
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ... Back     alignment and structure
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B* Back     alignment and structure
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 656
d1x38a1388 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-te 8e-31
d1x38a2214 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, 3e-24
d1tr9a_330 c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio chol 3e-11
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 388 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: NagZ-like
domain: Beta-D-glucan exohydrolase, N-terminal domain
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  122 bits (306), Expect = 8e-31
 Identities = 56/257 (21%), Positives = 107/257 (41%), Gaps = 28/257 (10%)

Query: 39  YWSPNVNIFRDPRWGRGQETPGEDPVLTGKY-----------AASYVRGLQGNTGSRLKV 87
            ++P + + RDPRWGR  E+  ED  +                  +  G+    G   KV
Sbjct: 143 AFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGKN-KV 201

Query: 88  AACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVN 147
           AAC KH+      +   VD  + N  +  ++     ++P     ++  V++VM SY+  N
Sbjct: 202 AACAKHFVG----DGGTVDGINENNTIINREGLMNIHMPAYKNAMDKGVSTVMISYSSWN 257

Query: 148 GKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDL- 206
           G    A+ D++   +    +  G+++SD + +     T         +   +I AGLD+ 
Sbjct: 258 GVKMHANQDLVTGYLKDTLKFKGFVISDWEGID--RITTPAGSDYSYSVKASILAGLDMI 315

Query: 207 ---DCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLG-PR 262
              +          G V GG++    ++ A+   + V+  +G+F+      P+ +     
Sbjct: 316 MVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFE-----NPYADPAMAE 370

Query: 263 DVCTPAHQQLALQAAHQ 279
            +    H+ LA +AA +
Sbjct: 371 QLGKQEHRDLAREAARK 387
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 214 Back     information, alignment and structure
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Length = 330 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query656
d1x38a1388 Beta-D-glucan exohydrolase, N-terminal domain {Bar 100.0
d1tr9a_330 Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 100.0
d1x38a2214 Beta-D-glucan exohydrolase, C-terminal domain {Bar 100.0
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 95.78
d1ejxb_101 Urease, beta-subunit {Klebsiella aerogenes [TaxId: 90.98
d4ubpb_122 Urease, beta-subunit {Bacillus pasteurii [TaxId: 1 89.13
d2q3za2114 Transglutaminase, two C-terminal domains {Human (H 87.65
d1e9ya1133 Urease, beta-subunit {Helicobacter pylori [TaxId: 85.61
d1ex0a2112 Transglutaminase, two C-terminal domains {Human (H 82.9
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: NagZ-like
domain: Beta-D-glucan exohydrolase, N-terminal domain
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=5.7e-57  Score=487.46  Aligned_cols=261  Identities=26%  Similarity=0.428  Sum_probs=227.7

Q ss_pred             cCCCCCChHHHH--------HHHHHHHHHHHHhhhcCCCccceeeCccccccCCCCCCccccccCCCHHHHHHHHHHHHH
Q 006224            4 NLPPFYCSICLD--------TRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVR   75 (656)
Q Consensus         4 ~~~~~P~~~~la--------~~~g~~~a~E~ra~~~~Gi~~~~~laP~vdi~r~p~~gr~~e~fgeDP~l~~~~a~a~v~   75 (656)
                      +.|.||++++++        +++|+++|+|+|++   |+ +++| ||++||.|||+|||++|+|||||+|+++|+. +|.
T Consensus       105 ~~t~~p~~~~~aat~d~~l~~~~g~~~g~E~ra~---Gi-n~~~-aPv~Dv~~~p~~gr~~et~geDp~l~~~~~~-~v~  178 (388)
T d1x38a1         105 GATIFPHNVGLGATRDPYLVKRIGEATALEVRAT---GI-QYAF-APCIAVCRDPRWGRCYESYSEDRRIVQSMTE-LIP  178 (388)
T ss_dssp             TCCCCCCHHHHHHHTCHHHHHHHHHHHHHHHHHT---TC-CEEC-CCBCCCCSCTTSTTGGGSSCSSHHHHHHGGG-HHH
T ss_pred             ccccchhhhhccccCCHHHHHHHHHHhhHHHHhc---CC-cccc-CCcccccccccccccccCccCCHHHHHHHHh-hhh
Confidence            468899999987        89999999999999   76 6665 9999999999999999999999999999965 788


Q ss_pred             HHccCCC-----------CCCceEEeeccccccCCCCCCCCCccccccccCHHHHHhhccHHHHHHHHcCCcceEeeccc
Q 006224           76 GLQGNTG-----------SRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYN  144 (656)
Q Consensus        76 G~Q~~~~-----------~~~gV~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~L~e~~l~pF~~ai~~g~~~~vM~sy~  144 (656)
                      ++|+...           +..||+||+|||||||...   .+++...+.+++++|+|+||+||+.+|++| +.+|||+||
T Consensus       179 ~~~g~~~~~~~~G~~~~~~~~gV~a~~KHFpG~g~~~---~~~~~~~~~i~~~~l~~~~l~pf~~~i~~g-~~~vM~s~~  254 (388)
T d1x38a1         179 GLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTV---DGINENNTIINREGLMNIHMPAYKNAMDKG-VSTVMISYS  254 (388)
T ss_dssp             HHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCG---GGCTTCEECCCHHHHHHHTSHHHHHHHHTT-CCEEEECSS
T ss_pred             hhhchhhhhhcccccccccccCcceeeeeeecCCccc---cCccccccchhHHHHHHHhhhhhHHHHhhc-ccccccccc
Confidence            8887531           2348999999999999643   234455677899999999999999999877 899999999


Q ss_pred             cCCCcccccCHHHHHHhhhhcCCCCcEEEcChhhhhhhhccccccCChHHHHHHHHHcCCCcCCch----hhHHHHHHHH
Q 006224          145 QVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGP----FLAIHTEGAV  220 (656)
Q Consensus       145 ~vng~pa~~s~~ll~~lLR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~e~~~~al~AG~D~~~~~----~~~~~l~~av  220 (656)
                      .+||+|+|.|+++|+++||++|||+|+|||||++|+++...+  .....++.+.++.||+||.|.+    .+.+.|.+||
T Consensus       255 ~~~g~pa~~s~~~l~~lLR~~~gF~G~VvSD~~~m~~~~~~~--~~~~~~~~~~a~~ag~d~~~~~~~~~~~~~~l~~av  332 (388)
T d1x38a1         255 SWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPA--GSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHV  332 (388)
T ss_dssp             EETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGGSSST--TTTHHHHHHHHHHHTCCBEECCSCHHHHHHHHHHHH
T ss_pred             ccCCccccCCHHHHHHHHHhccCCCceeecchhhcccccccc--CCcHHHHHHHHHhcCCCeecCCccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999986532  3466788899999999998742    4567899999


Q ss_pred             HCCCCCHHHHHHHhhhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhc
Q 006224          221 RGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQG  280 (656)
Q Consensus       221 ~~g~v~~~~ld~av~Ril~~k~~~Glf~~~p~~~~~~~~~~~~~~~~~~~~la~~~A~eS  280 (656)
                      ++|+|+++|||+||+|||++|+++|||| +|+..+.   ....+++++|+++|+++|+||
T Consensus       333 ~~G~i~~~rid~sv~Ril~~k~~lGlfd-~p~~~~~---~~~~i~~~~h~~~a~~aA~~S  388 (388)
T d1x38a1         333 NGGVIPMSRIDDAVTRILRVKFTMGLFE-NPYADPA---MAEQLGKQEHRDLAREAARKS  388 (388)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHHHTTTTT-CCSCCGG---GGGGTTCHHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHhCCCC-CCCCChh---hhhhcCCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999 7775432   124578999999999999997
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]} Back     information, alignment and structure
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]} Back     information, alignment and structure
>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]} Back     information, alignment and structure